Citrus Sinensis ID: 027594
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 221 | 2.2.26 [Sep-21-2011] | |||||||
| Q9H867 | 229 | Protein-lysine methyltran | yes | no | 0.796 | 0.768 | 0.333 | 1e-20 | |
| Q8C436 | 228 | Protein-lysine methyltran | yes | no | 0.769 | 0.745 | 0.352 | 1e-20 | |
| A4IGU3 | 215 | Protein-lysine methyltran | no | no | 0.837 | 0.860 | 0.304 | 2e-17 | |
| Q8WXB1 | 218 | Protein-lysine methyltran | no | no | 0.755 | 0.766 | 0.333 | 1e-16 | |
| A4FV98 | 226 | Protein-lysine methyltran | yes | no | 0.791 | 0.774 | 0.306 | 3e-15 | |
| Q5BLD8 | 218 | Protein-lysine methyltran | yes | no | 0.601 | 0.610 | 0.391 | 5e-15 | |
| Q28IN4 | 224 | Protein-lysine methyltran | no | no | 0.710 | 0.700 | 0.322 | 1e-14 | |
| Q8BLU2 | 248 | Protein-lysine methyltran | no | no | 0.760 | 0.677 | 0.293 | 1e-14 | |
| A6NDL7 | 271 | Putative methyltransferas | no | no | 0.723 | 0.590 | 0.322 | 2e-14 | |
| A6QP81 | 257 | Protein-lysine methyltran | no | no | 0.746 | 0.642 | 0.287 | 2e-14 |
| >sp|Q9H867|MT21D_HUMAN Protein-lysine methyltransferase METTL21D OS=Homo sapiens GN=METTL21D PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 16/192 (8%)
Query: 27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
Q +S +G VWDA++V KYLE G + L + V+ELG+G G G A LG
Sbjct: 31 QQYSSGGVGCVVWDAAIVLSKYLETPEFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89
Query: 87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
+V+ TD E+ LLK N+ N ++ GS+QA L WG E I+ P D
Sbjct: 90 ADVVVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWGEE--IEGFPSPPD 138
Query: 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWKSNFNV 202
+I+ D +Y E LEPLL+T+ +SG +T I+ YE R+ + ++ ++ + +F+
Sbjct: 139 FILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKKYFELLQLDFDF 198
Query: 203 KLVPKAKESTMW 214
+ +P K +
Sbjct: 199 EKIPLEKHDEEY 210
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8C436|MT21D_MOUSE Protein-lysine methyltransferase METTL21D OS=Mus musculus GN=Mettl21d PE=2 SV=2 | Back alignment and function description |
|---|
Score = 100 bits (248), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 100/187 (53%), Gaps = 17/187 (9%)
Query: 27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
Q S +G VWDA++V KYLE G + L + V+ELG+G G G A LG
Sbjct: 31 QQYGSGGVGCVVWDAAIVLSKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89
Query: 87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
+VI TD E+ LLK N++ N ++ GS+QA L WG + I+ + P D
Sbjct: 90 ADVIVTDLEELQDLLKMNIDMNKHLVT---------GSVQAKVLKWGED--IEDLMSP-D 137
Query: 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWKSNFNV 202
YI+ D +Y E LEPLL+T+ LSG +T I+ YE R+ + ++ ++ + +F+
Sbjct: 138 YILMADCIYYEESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFDF 197
Query: 203 KLVPKAK 209
+ +P K
Sbjct: 198 EEIPLDK 204
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Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 92/207 (44%), Gaps = 22/207 (10%)
Query: 5 RLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLK 64
R + S S + + H ++ QD + VWDA++V YLE L+
Sbjct: 16 RFHDSSAS---FKFVNHNIEIKQDWKQLGVAAVVWDAALVLCMYLESE-------GIHLQ 65
Query: 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGS 124
VIELGAG G+ G ALLG V TD+ + L+ NV N + D L
Sbjct: 66 NSSVIELGAGTGLVGIVAALLGAQVTITDRDLAMEFLRMNVRDNIPK--------DSLHR 117
Query: 125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184
+ L+WG +D+I+G D++Y E LLQT LS ++ ILL +R
Sbjct: 118 VSVRALNWGKS---LEEFSTYDFILGADIIYLEETFPDLLQTFLHLSSQQSVILLSSRLR 174
Query: 185 STSVHEQMLQMWKSNFNVKLVPKAKES 211
H+ L+M K +F + V K +
Sbjct: 175 YQRDHD-FLEMMKLHFTIADVYYDKNT 200
|
Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
H +Q QD + VWDA++V YLE +L+G+ +ELGAG G+ G
Sbjct: 29 HTIQIRQDWRHLGVAAVVWDAAIVLSTYLEMGA-------VELRGRSAVELGAGTGLVGI 81
Query: 81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140
ALLG +V TD+ L LK NV Q N + EL WG ++ +
Sbjct: 82 VAALLGAHVTITDRKVALEFLKSNV--------QANLPPHIQTKTVVKELTWGQ--NLGS 131
Query: 141 VAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSN 199
+P FD I+G D++Y E LLQT+ L + ILL IR L M +
Sbjct: 132 FSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRIRYER-DNNFLAMLERQ 190
Query: 200 FNVKLV 205
F V+ V
Sbjct: 191 FTVRKV 196
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 91/196 (46%), Gaps = 21/196 (10%)
Query: 20 GHQLQFSQDPNSK-HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVA 78
GH L +++ S+ + VWDA++ Y E +GK+VIELGAG G+
Sbjct: 37 GHVLNITENFGSRLGVAARVWDAALSLCNYFESQN-------VDFRGKKVIELGAGTGIV 89
Query: 79 GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138
G AL G +V TD VL ++ NV+ N PG G Q L WG + H+
Sbjct: 90 GILAALQGGDVTITDLPLVLEQIQGNVQANVP------PG----GRAQVRALSWGIDQHV 139
Query: 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ-MWK 197
+D ++G D+VY E LL T+ L GP TI L ++R E Q +
Sbjct: 140 --FPGDYDLVLGADIVYLEPTFPLLLGTLRHLCGPHGTIYLASKMREEHGTESFFQHLLP 197
Query: 198 SNFNVKLVPKAKESTM 213
+F ++L + ++ +
Sbjct: 198 QHFQLELAQRDEDENV 213
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Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5BLD8|MT21A_DANRE Protein-lysine methyltransferase METTL21A OS=Danio rerio GN=mettl21a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 81.3 bits (199), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 71/143 (49%), Gaps = 10/143 (6%)
Query: 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 122
LKGKRVIELGAG G+ G ALLG NV TD+ L L NV N + Q
Sbjct: 64 LKGKRVIELGAGTGLVGIVAALLGANVTITDREPALEFLTANVHENIPQGRQ-------- 115
Query: 123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182
++Q EL WG + +D I+G D+VY E LLQT+ LS T +LL
Sbjct: 116 KAVQVSELTWGENLDLYPQG-GYDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCR 174
Query: 183 IRSTSVHEQMLQMWKSNFNVKLV 205
IR E+ L + F+V+ V
Sbjct: 175 IRYER-DERFLTELRQRFSVQEV 196
|
Probable methyltransferase. Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 88/177 (49%), Gaps = 20/177 (11%)
Query: 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEV 97
VWDA++ Y E+ +K F KGK+VIELGAG G+ G ++LLG +V TD
Sbjct: 57 VWDAALFLCGYFEE--QKLDF-----KGKKVIELGAGTGIVGILVSLLGGHVTLTDLPHA 109
Query: 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE 157
L +++NV N +S NP Q L WG + + +D+++G D+VY
Sbjct: 110 LSQIQKNVSAN---VSSNNPP-------QVCALSWGLDQ--EKFPQDYDFVLGADIVYLH 157
Query: 158 HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ-MWKSNFNVKLVPKAKESTM 213
L+QT+ L GP+T+I L ++R Q + F +LV + K+ +
Sbjct: 158 DTYPLLIQTLQYLCGPQTSIFLSSKMRQEHGTMHFFQDILPQYFASELVKRNKDEEI 214
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Probable methyltransferase. Xenopus tropicalis (taxid: 8364) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8BLU2|MT21C_MOUSE Protein-lysine methyltransferase METTL21C OS=Mus musculus GN=Mettl21c PE=2 SV=1 | Back alignment and function description |
|---|
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 16/184 (8%)
Query: 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVIT 91
++ GT VW + +YLE + + L+ +++E+GAG G+ +LLG V
Sbjct: 69 ENYGTVVWPGATALCQYLEDHTEE-----LNLQDAKILEIGAGAGLVSIVSSLLGAQVTA 123
Query: 92 TDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--EDHIKAVAPPFDYII 149
TD +VL L+ N+ NT + P + EL WG E +DY++
Sbjct: 124 TDLPDVLGNLQYNILKNTLECTAHLP--------EVRELVWGEDLEQSFPKSTCCYDYVL 175
Query: 150 GTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 209
+DVVY + L+ LL T+ LS P T +L + R ++ +E L +K F+ L+ +
Sbjct: 176 ASDVVYHHYFLDKLLATMVYLSQPGTVVLWANKFRFSADYE-FLGKFKQAFDTTLLAEYS 234
Query: 210 ESTM 213
ES++
Sbjct: 235 ESSV 238
|
Probable methyltransferase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A6NDL7|MT21E_HUMAN Putative methyltransferase-like protein 21E pseudogene OS=Homo sapiens GN=METTL21EP PE=5 SV=2 | Back alignment and function description |
|---|
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 86/177 (48%), Gaps = 17/177 (9%)
Query: 10 STSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVI 69
+TS + +GH+++ ++ + G VW +++V +LE N ++ + K VI
Sbjct: 69 TTSWESFHFIGHEIRITEAMDC--YGAVVWPSALVLCYFLETNAKQ-----YNMVDKNVI 121
Query: 70 ELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE 129
E+GAG G+ +LLG +V TD E+L L+ N+ NT S+ P Q E
Sbjct: 122 EIGAGTGLVSIVASLLGAHVTATDLPELLGNLQYNISRNTKMKSKHLP--------QVKE 173
Query: 130 LDWGN--EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184
L WG + + + FDYI+ DVVYA LE LL T L T IL + R
Sbjct: 174 LSWGVALDTNFPRSSNNFDYILAADVVYAHPFLEELLITFDHLCKETTIILWAMKFR 230
|
Probable methyltransferase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A6QP81|MT21C_BOVIN Protein-lysine methyltransferase METTL21C OS=Bos taurus GN=METTL21C PE=2 SV=1 | Back alignment and function description |
|---|
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 16/181 (8%)
Query: 35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ 94
G VW ++ +YLE++ + L+G +++E+GAG G+ ++LG V TD
Sbjct: 81 GAVVWPGAMALCQYLEEHTEE-----LNLRGAKILEIGAGPGLVSIVASILGAQVTATDL 135
Query: 95 IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--EDHIKAVAPPFDYIIGTD 152
+VL L+ N+ NT + P + EL WG E +DY++ +D
Sbjct: 136 PDVLGNLQYNLLKNTLNCTTYLP--------EVKELVWGEGLEQSFPKSTLYYDYVLASD 187
Query: 153 VVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKEST 212
VVY + L+ LL T+ L P T +L + R ++ +E L +K F+ L+ +++ES+
Sbjct: 188 VVYHHYFLDKLLATMVYLCQPGTVLLWANKFRFSTDYE-FLDKFKQVFDTTLLAESQESS 246
Query: 213 M 213
+
Sbjct: 247 I 247
|
Probable methyltransferase. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 221 | ||||||
| 296087474 | 364 | unnamed protein product [Vitis vinifera] | 0.981 | 0.596 | 0.824 | 1e-104 | |
| 225465726 | 314 | PREDICTED: methyltransferase-like protei | 0.981 | 0.691 | 0.824 | 1e-104 | |
| 225436496 | 314 | PREDICTED: methyltransferase-like protei | 0.981 | 0.691 | 0.820 | 1e-104 | |
| 255565427 | 314 | conserved hypothetical protein [Ricinus | 0.981 | 0.691 | 0.792 | 6e-99 | |
| 449496188 | 309 | PREDICTED: methyltransferase-like protei | 0.977 | 0.699 | 0.764 | 1e-96 | |
| 449456044 | 309 | PREDICTED: methyltransferase-like protei | 0.977 | 0.699 | 0.764 | 2e-96 | |
| 297849112 | 322 | hypothetical protein ARALYDRAFT_888039 [ | 0.981 | 0.673 | 0.741 | 9e-96 | |
| 42571401 | 315 | S-adenosylmethionine-dependent methyltra | 0.977 | 0.685 | 0.746 | 1e-94 | |
| 334182376 | 322 | S-adenosylmethionine-dependent methyltra | 0.959 | 0.658 | 0.751 | 3e-93 | |
| 356539362 | 304 | PREDICTED: methyltransferase-like protei | 0.972 | 0.707 | 0.755 | 4e-93 |
| >gi|296087474|emb|CBI34063.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/217 (82%), Positives = 195/217 (89%)
Query: 1 MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
ME DRLNSP+TS I EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 51 MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 110
Query: 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 111 SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 170
Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180
GS+Q ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILLG
Sbjct: 171 SFGSVQVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 230
Query: 181 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 217
YEIRST+VHEQML MWK NF VK++PKAK + +P
Sbjct: 231 YEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 267
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225465726|ref|XP_002263990.1| PREDICTED: methyltransferase-like protein 21D-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/217 (82%), Positives = 195/217 (89%)
Query: 1 MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
ME DRLNSP+TS I EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 1 MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 60
Query: 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 61 SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 120
Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180
GS+Q ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILLG
Sbjct: 121 SFGSVQVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 180
Query: 181 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 217
YEIRST+VHEQML MWK NF VK++PKAK + +P
Sbjct: 181 YEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 217
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225436496|ref|XP_002273361.1| PREDICTED: methyltransferase-like protein 21D [Vitis vinifera] gi|297734922|emb|CBI17156.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust.
Identities = 178/217 (82%), Positives = 195/217 (89%)
Query: 1 MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
ME DRLNSP+TS I EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 1 MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 60
Query: 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 61 SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 120
Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180
GS++ ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLL+PLL+TIFALSGPKTTILLG
Sbjct: 121 SFGSVEVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 180
Query: 181 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 217
YEIRST+VHEQML MWK NF VK++PKAK + +P
Sbjct: 181 YEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 217
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255565427|ref|XP_002523704.1| conserved hypothetical protein [Ricinus communis] gi|223537008|gb|EEF38644.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 172/217 (79%), Positives = 188/217 (86%)
Query: 1 MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
ME DRLNSPS+ VI LEV+ HQLQF QDPNSKHLGTTVWDAS+VF K+LEKNCRKGRF P
Sbjct: 1 MEHDRLNSPSSCVITLEVMSHQLQFCQDPNSKHLGTTVWDASMVFAKFLEKNCRKGRFSP 60
Query: 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
SKLKGKRVIELGAGCGVAGFGMALLGC+V+ TDQ EVLPLL RNVE NTSRI QM+ S
Sbjct: 61 SKLKGKRVIELGAGCGVAGFGMALLGCDVVATDQKEVLPLLMRNVERNTSRIMQMDTNSV 120
Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180
SI+ ELDWGNEDHI+AV PPFDYIIGTDVVY EHLLEPLLQTIFALSGPKTTI++G
Sbjct: 121 SFRSIKVEELDWGNEDHIRAVDPPFDYIIGTDVVYTEHLLEPLLQTIFALSGPKTTIMMG 180
Query: 181 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 217
YEIRSTSVHEQML MWK NF VK++PKAK + + +P
Sbjct: 181 YEIRSTSVHEQMLDMWKKNFEVKVIPKAKMDSKYQHP 217
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449496188|ref|XP_004160067.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 166/217 (76%), Positives = 191/217 (88%), Gaps = 1/217 (0%)
Query: 1 MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
MEADRLNSPST + +EVLGH+L+F QDPNSKHLGTTVWDAS+VFVK+LE+NCRKG+F P
Sbjct: 1 MEADRLNSPSTFTMTMEVLGHELRFYQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60
Query: 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
SKLKGKRVIELGAGCG+AGFGMALLGC+V+ TDQ EVLP+L RN+E NT ++QMNP SD
Sbjct: 61 SKLKGKRVIELGAGCGLAGFGMALLGCDVVATDQREVLPILSRNIERNTPSLAQMNP-SD 119
Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180
GSI+A ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLLEPLL TI ALSGPKTTI+LG
Sbjct: 120 SFGSIRAAELDWGNEDHIKAVGPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIMLG 179
Query: 181 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 217
YEIRST+VHEQML+MWK NF VK V ++K + + +P
Sbjct: 180 YEIRSTNVHEQMLEMWKKNFEVKTVSQSKMDSQYQHP 216
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449456044|ref|XP_004145760.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 166/217 (76%), Positives = 191/217 (88%), Gaps = 1/217 (0%)
Query: 1 MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
MEADRLNSPST + +EVLGH+L+F QDPNSKHLGTTVWDAS+VFVK+LE+NCRKG+F P
Sbjct: 1 MEADRLNSPSTFTMTMEVLGHELRFYQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60
Query: 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
SKLKGKRVIELGAGCG+AGFGMALLGC+V+ TDQ EVLP+L RN+E NT ++QMNP SD
Sbjct: 61 SKLKGKRVIELGAGCGLAGFGMALLGCDVVATDQREVLPILSRNIERNTPSLAQMNP-SD 119
Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180
GSI+A ELDWGNEDHIKAV PPFD+IIGTDVVYAEHLLEPLL TI ALSGPKTTI+LG
Sbjct: 120 SFGSIRAAELDWGNEDHIKAVGPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIMLG 179
Query: 181 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 217
YEIRST+VHEQML+MWK NF VK V ++K + + +P
Sbjct: 180 YEIRSTNVHEQMLEMWKKNFEVKTVSQSKMDSQYQHP 216
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849112|ref|XP_002892437.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata] gi|297338279|gb|EFH68696.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 355 bits (910), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 161/217 (74%), Positives = 186/217 (85%)
Query: 1 MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
M+ DRLNSPST + +EVLGH+L F+QDPNSKHLGTTVWDAS+VF KYL KNCRKGRF P
Sbjct: 1 MDPDRLNSPSTCTVTIEVLGHELNFAQDPNSKHLGTTVWDASMVFAKYLGKNCRKGRFSP 60
Query: 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
SKLKGKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTS I QM PGS
Sbjct: 61 SKLKGKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSTILQMTPGSA 120
Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180
GS++ ELDWGNEDHI+AV PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++LG
Sbjct: 121 SFGSLRVAELDWGNEDHIRAVGPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLG 180
Query: 181 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 217
YEIRST VH++MLQMWK NF VK +P++K + +P
Sbjct: 181 YEIRSTVVHDKMLQMWKDNFEVKTIPRSKMDGEYQDP 217
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42571401|ref|NP_973791.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332190127|gb|AEE28248.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 162/217 (74%), Positives = 185/217 (85%), Gaps = 1/217 (0%)
Query: 1 MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
M+ DRLNSPST + +EVLGH+L F+QDPNSKHLGTTVWDAS+VF KYL KN RKGRF
Sbjct: 1 MDPDRLNSPSTCTVTIEVLGHELDFAQDPNSKHLGTTVWDASMVFAKYLGKNSRKGRFSS 60
Query: 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
SKLKGKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS
Sbjct: 61 SKLKGKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGS- 119
Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180
GS++ ELDWGNEDHI AV PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++LG
Sbjct: 120 AFGSLRVAELDWGNEDHITAVEPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLG 179
Query: 181 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 217
YEIRST VHE+MLQMWK NF VK +P++K + +P
Sbjct: 180 YEIRSTVVHEKMLQMWKDNFEVKTIPRSKMDGEYQDP 216
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182376|ref|NP_001184933.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332190128|gb|AEE28249.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 347 bits (889), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 160/213 (75%), Positives = 182/213 (85%), Gaps = 1/213 (0%)
Query: 5 RLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLK 64
RLNSPST + +EVLGH+L F+QDPNSKHLGTTVWDAS+VF KYL KN RKGRF SKLK
Sbjct: 12 RLNSPSTCTVTIEVLGHELDFAQDPNSKHLGTTVWDASMVFAKYLGKNSRKGRFSSSKLK 71
Query: 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGS 124
GKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS GS
Sbjct: 72 GKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGS-AFGS 130
Query: 125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184
++ ELDWGNEDHI AV PPFDY+IGTDVVY+E LLEPLL+TI ALSGPKTT++LGYEIR
Sbjct: 131 LRVAELDWGNEDHITAVEPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLGYEIR 190
Query: 185 STSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 217
ST VHE+MLQMWK NF VK +P++K + +P
Sbjct: 191 STVVHEKMLQMWKDNFEVKTIPRSKMDGEYQDP 223
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356539362|ref|XP_003538167.1| PREDICTED: methyltransferase-like protein 21D-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 164/217 (75%), Positives = 184/217 (84%), Gaps = 2/217 (0%)
Query: 1 MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
ME DRLNSP+T + LEV+GH+LQFSQDPNSKHLGTTVWDAS+VF K+LE+NCRKGRF P
Sbjct: 1 MEPDRLNSPTTFEMPLEVMGHELQFSQDPNSKHLGTTVWDASLVFAKFLERNCRKGRFSP 60
Query: 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
+KLKGKRVIELGAGCGV+G GMALLGC+VI TDQ EVLPLL+RNVE N SRI Q NP D
Sbjct: 61 AKLKGKRVIELGAGCGVSGIGMALLGCDVIVTDQKEVLPLLQRNVERNISRIMQKNP--D 118
Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180
GSI+ EL WG+E HIKAV PPFDYIIGTDVVY EHLLEPLLQTI ALSGP+TT +LG
Sbjct: 119 SFGSIKVAELQWGDESHIKAVGPPFDYIIGTDVVYVEHLLEPLLQTILALSGPRTTTMLG 178
Query: 181 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 217
YEIRSTSVHE+MLQMWK NF+VK V K+K + +P
Sbjct: 179 YEIRSTSVHEKMLQMWKRNFDVKTVAKSKMDETFQHP 215
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 221 | ||||||
| TAIR|locus:2197234 | 316 | AT1G73320 "AT1G73320" [Arabido | 0.882 | 0.617 | 0.338 | 5.9e-25 | |
| TAIR|locus:2167618 | 234 | AT5G44170 "AT5G44170" [Arabido | 0.837 | 0.790 | 0.346 | 8.7e-24 | |
| RGD|1306228 | 274 | Mettl21d "methyltransferase li | 0.769 | 0.620 | 0.358 | 3.9e-21 | |
| MGI|MGI:2684917 | 228 | Mettl21d "methyltransferase li | 0.769 | 0.745 | 0.363 | 1e-20 | |
| UNIPROTKB|Q9H867 | 229 | METTL21D "Protein-lysine methy | 0.773 | 0.746 | 0.342 | 2.7e-20 | |
| ZFIN|ZDB-GENE-050320-145 | 218 | mettl21a "methyltransferase li | 0.760 | 0.770 | 0.372 | 7.2e-20 | |
| ZFIN|ZDB-GENE-060825-19 | 223 | mettl21d "methyltransferase li | 0.782 | 0.775 | 0.331 | 9.2e-20 | |
| UNIPROTKB|Q8WXB1 | 218 | METTL21A "Protein-lysine methy | 0.746 | 0.756 | 0.345 | 2.5e-17 | |
| MGI|MGI:1914349 | 218 | Mettl21a "methyltransferase li | 0.755 | 0.766 | 0.349 | 4.1e-17 | |
| RGD|1311824 | 218 | Mettl21a "methyltransferase li | 0.755 | 0.766 | 0.338 | 4.1e-17 |
| TAIR|locus:2197234 AT1G73320 "AT1G73320" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 72/213 (33%), Positives = 113/213 (53%)
Query: 6 LNSPSTSVINLEVLGHQLQFSQDPNSKHL----GTTVWDASVVFVKYLEKNCRKGRFCPS 61
L + S+ + L+ GH L Q P S + G+ +WD+ VV K+LE +
Sbjct: 86 LVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVLGKFLEHSVDSKVL--- 142
Query: 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDL 121
L+GK+++ELG+GCG+ G ALLG N + TD + L LLK+N++ N R +
Sbjct: 143 SLEGKKIVELGSGCGLVGCIAALLGGNAVLTDLPDRLRLLKKNIQTNLHR-------GNT 195
Query: 122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181
GS EL WG++ + P DY++G+DV+Y+E + L++T+ L +TTI L
Sbjct: 196 RGSAIVQELVWGDDPDPDLIEPFPDYVLGSDVIYSEEAVHHLVKTLLQLCSDQTTIFLSG 255
Query: 182 EIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMW 214
E+R+ +V E L+ +F + V E T W
Sbjct: 256 ELRNDAVLEYFLETALKDFAIGRV----EQTQW 284
|
|
| TAIR|locus:2167618 AT5G44170 "AT5G44170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
Identities = 71/205 (34%), Positives = 103/205 (50%)
Query: 13 VINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEK----NCRKGRFCPSK------ 62
VI+L V G +L QD S H+GT+VW S++ K+ E+ + P+
Sbjct: 8 VIDLTVNGTKLSIQQDNGSMHVGTSVWPCSLILSKFAERWSTLDSSSSTTSPNPYAELFD 67
Query: 63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDL 121
+ +R IELG GCGVAG LLG ++ TD V+P LK N++ N + + G L
Sbjct: 68 FRRRRGIELGTGCGVAGMAFYLLGLTEIVLTDIAPVMPALKHNLKRNKTAL-----GKSL 122
Query: 122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181
SI + W N D I A+ PPFD +I DVVY E + L+ + L +LLGY
Sbjct: 123 KTSI----VYWNNRDQISALKPPFDLVIAADVVYIEESVGQLVTAMELLVADDGAVLLGY 178
Query: 182 EIRSTSVHEQMLQMWKSNFNVKLVP 206
+IRS + ++ F ++ VP
Sbjct: 179 QIRSPEADKLFWELCDIVFKIEKVP 203
|
|
| RGD|1306228 Mettl21d "methyltransferase like 21D" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 67/187 (35%), Positives = 100/187 (53%)
Query: 27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
Q S +G VWDA++V KYLE G + L + V+ELG+G G G A LG
Sbjct: 77 QQYGSGGVGCVVWDAAIVLAKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 135
Query: 87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
+VI TD E+ LLK N+ N ++ GS+QA L WG D I+ + P D
Sbjct: 136 ADVIVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWG--DDIEDLMSP-D 183
Query: 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKSNFNV 202
YI+ D +Y E LEPLL+T+ LSG +T+I+ YE R+ + ++ ++ + +F+
Sbjct: 184 YILMADCIYYEESLEPLLKTLKDLSGSETSIICCYEQRTMGKNPEIEKKYFELLQLDFDF 243
Query: 203 KLVPKAK 209
+ +P K
Sbjct: 244 EKIPLDK 250
|
|
| MGI|MGI:2684917 Mettl21d "methyltransferase like 21D" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
Identities = 68/187 (36%), Positives = 101/187 (54%)
Query: 27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
Q S +G VWDA++V KYLE G + L + V+ELG+G G G A LG
Sbjct: 31 QQYGSGGVGCVVWDAAIVLSKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89
Query: 87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
+VI TD E+ LLK N++ N ++ GS+QA L WG ED I+ + P D
Sbjct: 90 ADVIVTDLEELQDLLKMNIDMNKHLVT---------GSVQAKVLKWG-ED-IEDLMSP-D 137
Query: 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKSNFNV 202
YI+ D +Y E LEPLL+T+ LSG +T I+ YE R+ + ++ ++ + +F+
Sbjct: 138 YILMADCIYYEESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFDF 197
Query: 203 KLVPKAK 209
+ +P K
Sbjct: 198 EEIPLDK 204
|
|
| UNIPROTKB|Q9H867 METTL21D "Protein-lysine methyltransferase METTL21D" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 64/187 (34%), Positives = 99/187 (52%)
Query: 27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
Q +S +G VWDA++V KYLE G + L + V+ELG+G G G A LG
Sbjct: 31 QQYSSGGVGCVVWDAAIVLSKYLETPEFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89
Query: 87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
+V+ TD E+ LLK N+ N ++ GS+QA L WG E I+ P D
Sbjct: 90 ADVVVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWGEE--IEGFPSPPD 138
Query: 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKSNFNV 202
+I+ D +Y E LEPLL+T+ +SG +T I+ YE R+ + ++ ++ + +F+
Sbjct: 139 FILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKKYFELLQLDFDF 198
Query: 203 KLVPKAK 209
+ +P K
Sbjct: 199 EKIPLEK 205
|
|
| ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 69/185 (37%), Positives = 91/185 (49%)
Query: 21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
H+++ SQD + VWDA+VV +LE G+ LKGKRVIELGAG G+ G
Sbjct: 29 HRIRLSQDWKRLGVAAVVWDAAVVLCMFLEM----GKV---DLKGKRVIELGAGTGLVGI 81
Query: 81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140
ALLG NV TD+ L L NV N + Q ++Q EL WG +
Sbjct: 82 VAALLGANVTITDREPALEFLTANVHENIPQGRQK--------AVQVSELTWGENLDLYP 133
Query: 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF 200
+D I+G D+VY E LLQT+ LS T +LL IR E+ L + F
Sbjct: 134 QGG-YDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCRIRYER-DERFLTELRQRF 191
Query: 201 NVKLV 205
+V+ V
Sbjct: 192 SVQEV 196
|
|
| ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 63/190 (33%), Positives = 97/190 (51%)
Query: 34 LGTTVWDASVVFVKYLEKN--CRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVIT 91
+G VWDA++V KYLE C G S K +IELGAG G+ G A LG NV
Sbjct: 33 VGCVVWDAAIVLSKYLETEQFCSIGSGV-SMWSSKNIIELGAGTGLVGLVAASLGANVTL 91
Query: 92 TDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 151
TD ++ PLL+ N++ N I GS+ A L WG ++ P YI+
Sbjct: 92 TDLEDLQPLLQLNIKKNQQLIHT--------GSVTAKVLKWGA--NVDDFLPHPHYILMA 141
Query: 152 DVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQM----LQMWKSNFNVKLVPK 207
D +Y E +EPL++T+ L+GP+T I+ YE R+ V+ ++ ++ +F + +
Sbjct: 142 DCIYYEQSVEPLVETLKLLAGPETCIICCYEQRTVGVNPEIEKRFFELLLQDFQSEEISS 201
Query: 208 AKESTMWGNP 217
K+ + +P
Sbjct: 202 EKQDPEFNSP 211
|
|
| UNIPROTKB|Q8WXB1 METTL21A "Protein-lysine methyltransferase METTL21A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 65/188 (34%), Positives = 91/188 (48%)
Query: 21 HQLQFSQDPNSKHLGTT--VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVA 78
H +Q QD +HLG VWDA++V YLE +L+G+ +ELGAG G+
Sbjct: 29 HTIQIRQD--WRHLGVAAVVWDAAIVLSTYLEMGA-------VELRGRSAVELGAGTGLV 79
Query: 79 GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138
G ALLG +V TD+ L LK NV+ N + P ++ EL WG ++
Sbjct: 80 GIVAALLGAHVTITDRKVALEFLKSNVQAN------LPPHIQTKTVVK--ELTWGQ--NL 129
Query: 139 KAVAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK 197
+ +P FD I+G D++Y E LLQT+ L + ILL IR L M +
Sbjct: 130 GSFSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRIRYER-DNNFLAMLE 188
Query: 198 SNFNVKLV 205
F V+ V
Sbjct: 189 RQFTVRKV 196
|
|
| MGI|MGI:1914349 Mettl21a "methyltransferase like 21A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 65/186 (34%), Positives = 86/186 (46%)
Query: 21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
H +Q QD + VWDA+VV YLE +L+G +ELGAG G+ G
Sbjct: 29 HTIQIRQDWRQLGVAAVVWDAAVVLSMYLEMGA-------VELRGCSAVELGAGTGLVGI 81
Query: 81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140
ALLG V TD+ L LK NVE N + P + + EL WG ++++
Sbjct: 82 VAALLGAQVTITDRKVALEFLKSNVEANLP--PHIQPKAVVK------ELTWGQ--NLES 131
Query: 141 VAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSN 199
+P FD I+G DV+Y E LLQT+ L + ILL IR L M +
Sbjct: 132 FSPGEFDLILGADVIYLEDTFTDLLQTLGHLCSNNSVILLACRIRYER-DSNFLTMLERQ 190
Query: 200 FNVKLV 205
F V V
Sbjct: 191 FTVSKV 196
|
|
| RGD|1311824 Mettl21a "methyltransferase like 21A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
Identities = 63/186 (33%), Positives = 85/186 (45%)
Query: 21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
H +Q QD + VWDA++V YLE +L+G +ELGAG G+ G
Sbjct: 29 HTIQIRQDWGRLGVAAVVWDAAIVLSTYLEMGA-------VELRGCSAVELGAGTGLVGI 81
Query: 81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140
ALLG +V TD+ L LK NVE N + P + EL WG ++ +
Sbjct: 82 VAALLGAHVTITDRKVALEFLKSNVEANLP--PHIQP------KVVVKELTWGQ--NLDS 131
Query: 141 VAP-PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSN 199
+P FD I+G D++Y E LLQT+ L + ILL IR L M +
Sbjct: 132 FSPGEFDLILGADIIYLEDTFTDLLQTLGHLCSNNSVILLACRIRYER-DNNFLTMLERQ 190
Query: 200 FNVKLV 205
F V V
Sbjct: 191 FTVSKV 196
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 221 | |||
| pfam10294 | 170 | pfam10294, Methyltransf_16, Putative methyltransfe | 2e-35 | |
| COG3897 | 218 | COG3897, COG3897, Predicted methyltransferase [Gen | 5e-07 | |
| COG2263 | 198 | COG2263, COG2263, Predicted RNA methylase [Transla | 4e-04 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 5e-04 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 0.002 |
| >gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-35
Identities = 57/154 (37%), Positives = 76/154 (49%), Gaps = 17/154 (11%)
Query: 35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITT 92
G VWDA+VV KYLE K + L G V+ELG+G G+ G +ALL G +V T
Sbjct: 18 GGHVWDAAVVLSKYLEM---KITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTIT 74
Query: 93 DQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP-PFDYIIGT 151
D E + L+K+N+E N L + A LDWG + P P D I+
Sbjct: 75 DLEEAIELMKKNIELNG-----------LSSKVTAKVLDWGEDLPDDVFDPHPVDLILAA 123
Query: 152 DVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185
D VY E L +T+ L G +T IL+ Y+ R
Sbjct: 124 DCVYNEDSFPLLEKTLNDLLGKETVILVAYKKRR 157
|
Length = 170 |
| >gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-07
Identities = 34/144 (23%), Positives = 56/144 (38%), Gaps = 28/144 (19%)
Query: 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEV 97
W V +Y++ + P ++GKRV++LGAG G+ A G V+ D
Sbjct: 61 WAGGQVLARYIDDH-------PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW 113
Query: 98 L-PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA 156
L ++ N N I +DL+GS P FD ++ D+ Y
Sbjct: 114 LEQAIRLNAAANGVSILFT--HADLIGS-----------------PPAFDLLLAGDLFYN 154
Query: 157 EHLLEPLLQTIFALSGPKTTILLG 180
+ L+ L+ +L+G
Sbjct: 155 HTEADRLIPWKDRLAEAGAAVLVG 178
|
Length = 218 |
| >gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 4e-04
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 18/73 (24%)
Query: 63 LKGKRVIELGAGCGVAGFGMALLG-CNVITTD-QIEVLPLLKRN-------VEWNTSRIS 113
L+GK V++LGAG G+ G ALLG V+ D E L + + N VE+ + +S
Sbjct: 44 LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVS 103
Query: 114 Q---------MNP 117
MNP
Sbjct: 104 DFRGKFDTVIMNP 116
|
Length = 198 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 5e-04
Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 21/119 (17%)
Query: 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120
G RV+++G G G +A L G V D E+L L + N +
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK------------LA 48
Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179
L I V+ D + + FD + + L LL + +L P ++L
Sbjct: 49 LGPRITFVQGDAPDAL---DLLEGFDAVF---IGGGGGDLLELLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.002
Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 32/125 (25%)
Query: 57 RFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116
R P G RV+++G G G+ + G +V D
Sbjct: 15 RLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVD----------------------- 51
Query: 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEP--LLQTIFALSGPK 174
+ + +A +D I +V+ EHL +P LLQ + L P
Sbjct: 52 -----PSPAAVLIFSLFDAPDPAVLAGKYDLITAFEVL--EHLPDPPALLQQLRELLKPG 104
Query: 175 TTILL 179
+L+
Sbjct: 105 GVLLI 109
|
This family appears to be a methyltransferase domain. Length = 154 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 221 | |||
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.97 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.83 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.82 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.82 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.82 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 99.8 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 99.78 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.76 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.74 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.74 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.73 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.72 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.72 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.69 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.69 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.69 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.66 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.66 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.64 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.64 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.63 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.62 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.62 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.62 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.62 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.62 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.6 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.6 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.6 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.57 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.57 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.56 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.56 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.56 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.56 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.55 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.55 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.55 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.55 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.54 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.53 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.53 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.53 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.52 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.51 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.51 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.51 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.51 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.5 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.5 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.5 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.5 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.49 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.48 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.48 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.47 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.47 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.47 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 99.47 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.46 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.46 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.46 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.46 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.45 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.45 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.45 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.45 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.45 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.44 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.44 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.44 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.43 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.43 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.43 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.41 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.41 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.41 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.4 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.4 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.39 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.39 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.39 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.39 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.39 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.39 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.38 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.38 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.38 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 99.38 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.37 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.36 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.36 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.36 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.36 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.36 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.35 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.35 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.32 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.32 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.32 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.31 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.31 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.3 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.3 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 99.3 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.29 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.29 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.29 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 99.29 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.28 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 99.28 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.27 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 99.27 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 99.27 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.26 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.25 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.25 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.25 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.24 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.24 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.24 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.24 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.23 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.22 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.21 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.21 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.21 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 99.19 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.19 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.19 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.17 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.17 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.16 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.16 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 99.16 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.15 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.14 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.14 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.14 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 99.13 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.13 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.13 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.13 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.07 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.07 | |
| PLN02476 | 278 | O-methyltransferase | 99.06 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.06 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.03 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 99.01 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.01 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 99.01 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.0 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.97 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.97 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.94 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.94 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.91 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.89 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.89 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.88 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.87 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.87 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.87 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.87 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.86 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.86 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.85 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.84 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.84 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.84 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.83 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.83 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.8 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.79 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.73 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.72 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.7 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.69 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.68 | |
| PLN02366 | 308 | spermidine synthase | 98.68 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.68 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.66 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.66 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.63 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 98.6 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.6 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 98.57 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.53 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.5 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.49 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.49 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.49 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.47 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 98.43 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.4 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.4 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.37 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.35 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.33 | |
| PLN02823 | 336 | spermine synthase | 98.32 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.28 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.27 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.21 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.21 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.19 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.19 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.19 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.17 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.17 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.16 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.15 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 98.14 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.13 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.11 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.11 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.1 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.08 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.05 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.02 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.01 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.97 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.95 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.89 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.87 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.86 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.85 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.84 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.83 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.81 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.79 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.79 | |
| PHA01634 | 156 | hypothetical protein | 97.77 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.72 | |
| KOG2497 | 262 | consensus Predicted methyltransferase [General fun | 97.7 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 97.65 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.64 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.6 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.59 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 97.46 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 97.41 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.37 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.37 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.36 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.36 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.28 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.28 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.15 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.14 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 97.05 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.04 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 97.04 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.03 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.01 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 96.66 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 96.6 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 96.6 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 96.58 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.5 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.41 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 96.39 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.37 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 96.26 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 96.16 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.1 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.05 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 95.95 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.93 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 95.86 | |
| COG2961 | 279 | ComJ Protein involved in catabolism of external DN | 95.82 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 95.79 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 95.76 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 95.66 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 95.65 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 95.56 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.54 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 95.32 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 95.31 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.29 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.08 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.87 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 94.81 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.7 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.68 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 94.68 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 94.66 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.57 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 94.43 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 94.43 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.41 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 94.33 | |
| KOG3350 | 217 | consensus Uncharacterized conserved protein [Funct | 94.29 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 94.02 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 93.67 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.61 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 93.49 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 92.83 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 92.81 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 92.48 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 92.45 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 92.42 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 92.41 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 92.4 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 92.13 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 92.03 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 92.0 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 91.84 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 91.55 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.36 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.26 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 90.84 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 90.58 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.3 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 89.98 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 89.9 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 89.86 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 89.81 | |
| PRK13699 | 227 | putative methylase; Provisional | 89.81 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 89.73 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 88.96 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 88.9 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 88.51 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 88.46 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 88.43 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 88.16 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 88.02 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 87.93 | |
| PF04378 | 245 | RsmJ: Ribosomal RNA small subunit methyltransferas | 87.82 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 87.73 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 87.62 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 87.43 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 87.21 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 87.05 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 86.82 | |
| PF06460 | 299 | NSP13: Coronavirus NSP13; InterPro: IPR009461 This | 86.59 | |
| COG3392 | 330 | Adenine-specific DNA methylase [DNA replication, r | 86.39 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 86.26 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 86.17 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 85.9 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 85.87 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 85.8 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 85.41 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 85.33 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 85.06 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 84.83 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 84.77 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 84.76 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 84.7 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 84.67 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 84.67 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 84.23 | |
| PF08468 | 155 | MTS_N: Methyltransferase small domain N-terminal; | 84.15 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 84.09 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 83.99 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 83.67 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 83.61 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 83.54 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 83.52 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 83.15 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 83.15 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 83.1 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 82.9 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 82.85 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 82.49 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 82.39 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 82.37 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 82.28 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 82.04 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 82.01 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 81.66 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 81.59 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 81.57 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 81.35 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 81.16 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 81.15 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 81.14 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 80.94 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 80.86 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 80.86 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 80.6 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 80.59 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 80.49 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 80.43 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 80.24 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 80.21 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 80.09 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 80.07 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 80.03 |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=206.85 Aligned_cols=167 Identities=39% Similarity=0.649 Sum_probs=103.6
Q ss_pred CeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhh
Q 027594 20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEV 97 (221)
Q Consensus 20 ~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~ 97 (221)
+..+.|.++. ..++|.++|+++.+|++||.++.... +.+...++++|||||||+|++|++++++ +++|++||++++
T Consensus 3 ~~~l~i~e~~-~~~~G~~vW~aa~~La~~l~~~~~~~-~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~ 80 (173)
T PF10294_consen 3 NKTLQIEEDW-GDGTGGKVWPAALVLARYLLSHSESE-FNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEV 80 (173)
T ss_dssp ---------------------HHHHHHHHHHH--------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-H
T ss_pred cccccccccc-ccCCcEEEechHHHHHHHHHHhcccc-cchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchh
Confidence 4567788877 44899999999999999999853110 1145778999999999999999999998 568999999779
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeE
Q 027594 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~-~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~ 176 (221)
++.++.|++.|+.. ...++.+..++|++..... ....+||+|+++|++|+.+.+++|++++.+++++++.
T Consensus 81 l~~l~~Ni~~N~~~---------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~ 151 (173)
T PF10294_consen 81 LELLRRNIELNGSL---------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK 151 (173)
T ss_dssp HHHHHHHHHTT-----------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred hHHHHHHHHhcccc---------ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence 99999999999731 1468999999999853221 2246899999999999999999999999999999999
Q ss_pred EEEEEEecChhHHHHHHHHHhc
Q 027594 177 ILLGYEIRSTSVHEQMLQMWKS 198 (221)
Q Consensus 177 ~~i~~~~r~~~~~~~~~~~~~~ 198 (221)
++++++.|... .+.|++++++
T Consensus 152 vl~~~~~R~~~-~~~F~~~~~k 172 (173)
T PF10294_consen 152 VLLAYKRRRKS-EQEFFDRLKK 172 (173)
T ss_dssp EEEEEE-S-TG-GCHHHHHH--
T ss_pred EEEEeCEecHH-HHHHHHHhhh
Confidence 99999988654 4678888764
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-19 Score=150.74 Aligned_cols=154 Identities=21% Similarity=0.338 Sum_probs=115.5
Q ss_pred cCeEEEEeeCCC-CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-h
Q 027594 19 LGHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-I 95 (221)
Q Consensus 19 ~~~~~~i~~~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~ 95 (221)
.+.++.|..+|+ +|++|.+ +++.+..++|.+. ..++++|||+|||||+++++++++||+ |+++|+ +
T Consensus 126 ~~~~~~I~idPg~AFGTG~H--~TT~lcl~~l~~~---------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp 194 (295)
T PF06325_consen 126 PPDEIVIEIDPGMAFGTGHH--PTTRLCLELLEKY---------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDP 194 (295)
T ss_dssp STTSEEEEESTTSSS-SSHC--HHHHHHHHHHHHH---------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSC
T ss_pred CCCcEEEEECCCCcccCCCC--HHHHHHHHHHHHh---------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCH
Confidence 456778888885 5777766 8899999999866 457889999999999999999999995 999998 5
Q ss_pred hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCe
Q 027594 96 EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKT 175 (221)
Q Consensus 96 ~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g 175 (221)
.+++.+++|++.|++ ..++.+. .... ....+||+|++| -..+.+..++..+.++++|||
T Consensus 195 ~Av~~a~~N~~~N~~-----------~~~~~v~-----~~~~--~~~~~~dlvvAN---I~~~vL~~l~~~~~~~l~~~G 253 (295)
T PF06325_consen 195 LAVEAARENAELNGV-----------EDRIEVS-----LSED--LVEGKFDLVVAN---ILADVLLELAPDIASLLKPGG 253 (295)
T ss_dssp HHHHHHHHHHHHTT------------TTCEEES-----CTSC--TCCS-EEEEEEE---S-HHHHHHHHHHCHHHEEEEE
T ss_pred HHHHHHHHHHHHcCC-----------CeeEEEE-----Eecc--cccccCCEEEEC---CCHHHHHHHHHHHHHhhCCCC
Confidence 699999999999997 3445432 1111 124799999998 333446678888888999999
Q ss_pred EEEEEEEecChhHHHHHHHHHhcCCeEEEec
Q 027594 176 TILLGYEIRSTSVHEQMLQMWKSNFNVKLVP 206 (221)
Q Consensus 176 ~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~ 206 (221)
.++++....... +.+.+.++++|++.+..
T Consensus 254 ~lIlSGIl~~~~--~~v~~a~~~g~~~~~~~ 282 (295)
T PF06325_consen 254 YLILSGILEEQE--DEVIEAYKQGFELVEER 282 (295)
T ss_dssp EEEEEEEEGGGH--HHHHHHHHTTEEEEEEE
T ss_pred EEEEccccHHHH--HHHHHHHHCCCEEEEEE
Confidence 999988776653 55666666688875544
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-19 Score=144.63 Aligned_cols=158 Identities=23% Similarity=0.286 Sum_probs=125.7
Q ss_pred EcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-
Q 027594 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ- 94 (221)
Q Consensus 18 ~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~- 94 (221)
..++.+.|.|++....+|.. +++|++|.... ..++|||||||+|++++++|++ . ++++++|+
T Consensus 13 ~~~~~~~I~q~~~~~~~~~D----aiLL~~~~~~~-----------~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq 77 (248)
T COG4123 13 FTFKQFFIIQDRCGFRYGTD----AILLAAFAPVP-----------KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQ 77 (248)
T ss_pred ccccceEEEeCCCccccccH----HHHHHhhcccc-----------cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeC
Confidence 35788999999987777766 99999999632 3679999999999999999976 4 78999997
Q ss_pred hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc----------------
Q 027594 95 IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------- 158 (221)
Q Consensus 95 ~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~---------------- 158 (221)
+++.+.|++|++.|.+ .+++++.+.|..+..... ...+||+|++|||+|...
T Consensus 78 ~~~a~~A~~nv~ln~l-----------~~ri~v~~~Di~~~~~~~-~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~ 145 (248)
T COG4123 78 EEAAEMAQRNVALNPL-----------EERIQVIEADIKEFLKAL-VFASFDLIICNPPYFKQGSRLNENPLRAIARHEI 145 (248)
T ss_pred HHHHHHHHHHHHhCcc-----------hhceeEehhhHHHhhhcc-cccccCEEEeCCCCCCCccccCcChhhhhhhhhh
Confidence 5699999999999987 688999997776554332 234799999999998522
Q ss_pred --CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc-CCeEEEe
Q 027594 159 --LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV 205 (221)
Q Consensus 159 --~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~-~f~v~~v 205 (221)
.++.+++...++|+|+|.++++++.. -...+++.++. +|.+.++
T Consensus 146 ~~~le~~i~~a~~~lk~~G~l~~V~r~e---rl~ei~~~l~~~~~~~k~i 192 (248)
T COG4123 146 TLDLEDLIRAAAKLLKPGGRLAFVHRPE---RLAEIIELLKSYNLEPKRI 192 (248)
T ss_pred cCCHHHHHHHHHHHccCCCEEEEEecHH---HHHHHHHHHHhcCCCceEE
Confidence 47889999999999999999987642 24566676665 6665433
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-19 Score=136.44 Aligned_cols=136 Identities=26% Similarity=0.335 Sum_probs=105.6
Q ss_pred EEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhH
Q 027594 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVL 98 (221)
Q Consensus 22 ~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~--v~~~D~-~~~l 98 (221)
++++.+.|+.+..+ .+=.++.+|++++..+ ++++|||||||+|.+|+.+++.+.. |+++|. ++++
T Consensus 1 ~~~~~~~~gvFs~~-~~d~~t~lL~~~l~~~-----------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~ 68 (170)
T PF05175_consen 1 ELEFITHPGVFSPP-RLDAGTRLLLDNLPKH-----------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL 68 (170)
T ss_dssp EEEEEEETTSTTTT-SHHHHHHHHHHHHHHH-----------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH
T ss_pred CEEEEECCCeeCCC-CCCHHHHHHHHHHhhc-----------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence 47888889877632 3345688999999865 5679999999999999999998765 999998 6699
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc-----CHHHHHHHHHHhcCC
Q 027594 99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGP 173 (221)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~-----~~~~l~~~~~~ll~~ 173 (221)
+.+++|++.|+. +++++...|+.+.. ...+||+|++|+|++... ....++....++|+|
T Consensus 69 ~~a~~n~~~n~~------------~~v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~ 132 (170)
T PF05175_consen 69 ELAKRNAERNGL------------ENVEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP 132 (170)
T ss_dssp HHHHHHHHHTTC------------TTEEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE
T ss_pred HHHHHHHHhcCc------------cccccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccC
Confidence 999999999986 23777776654332 257999999999987643 378889999999999
Q ss_pred CeEEEEEEEecC
Q 027594 174 KTTILLGYEIRS 185 (221)
Q Consensus 174 ~g~~~i~~~~r~ 185 (221)
||.++++.....
T Consensus 133 ~G~l~lv~~~~~ 144 (170)
T PF05175_consen 133 GGRLFLVINSHL 144 (170)
T ss_dssp EEEEEEEEETTS
T ss_pred CCEEEEEeecCC
Confidence 999998776433
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-19 Score=146.89 Aligned_cols=157 Identities=24% Similarity=0.320 Sum_probs=117.8
Q ss_pred eEEEEeeCCC-CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhh
Q 027594 21 HQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV 97 (221)
Q Consensus 21 ~~~~i~~~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~ 97 (221)
.++.|..+|| .+++|++ +.+.+..++|.+. ..++++|||+|||+|+++++++++||+ |+++|+ |.+
T Consensus 129 ~~~~i~lDPGlAFGTG~H--pTT~lcL~~Le~~---------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~A 197 (300)
T COG2264 129 DELNIELDPGLAFGTGTH--PTTSLCLEALEKL---------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQA 197 (300)
T ss_pred CceEEEEccccccCCCCC--hhHHHHHHHHHHh---------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHH
Confidence 5778888985 4666655 8888999999865 448899999999999999999999996 999998 559
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
++.++.|+++|+.. ..++... ...... ....+||+|++|= --+-+..|...+.++++|||.+
T Consensus 198 V~aa~eNa~~N~v~-----------~~~~~~~---~~~~~~-~~~~~~DvIVANI---LA~vl~~La~~~~~~lkpgg~l 259 (300)
T COG2264 198 VEAARENARLNGVE-----------LLVQAKG---FLLLEV-PENGPFDVIVANI---LAEVLVELAPDIKRLLKPGGRL 259 (300)
T ss_pred HHHHHHHHHHcCCc-----------hhhhccc---ccchhh-cccCcccEEEehh---hHHHHHHHHHHHHHHcCCCceE
Confidence 99999999999862 1111111 111111 1246999999982 2344668888899999999999
Q ss_pred EEEEEecChhHHHHHHHHH-hcCCeEEEecCC
Q 027594 178 LLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA 208 (221)
Q Consensus 178 ~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~ 208 (221)
+++....... +...+.+ +.+|.+.++...
T Consensus 260 IlSGIl~~q~--~~V~~a~~~~gf~v~~~~~~ 289 (300)
T COG2264 260 ILSGILEDQA--ESVAEAYEQAGFEVVEVLER 289 (300)
T ss_pred EEEeehHhHH--HHHHHHHHhCCCeEeEEEec
Confidence 9988766553 5666666 569988766554
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.9e-19 Score=140.76 Aligned_cols=168 Identities=32% Similarity=0.480 Sum_probs=128.7
Q ss_pred CCcccceecchHHHHHHHHhhcccCCCCCCCCC-----CCCeEEEeCCCccHHHHHHHH-hCCEEEEecchhhHHHHHHH
Q 027594 31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKL-----KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRN 104 (221)
Q Consensus 31 ~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~-----~~~~vLelGcG~G~~~l~~a~-~ga~v~~~D~~~~l~~~~~n 104 (221)
.-.....+|+++..++.++..+...... .... +.++|||||+|||++|+.+|. .++.|+.+|.++.+..++.|
T Consensus 49 ~~~~~~~~w~~~~~la~~~~~~~~~~~~-~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~ 127 (248)
T KOG2793|consen 49 EQGISAYLWSCATTLAQPLWERRRDSEL-TATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFN 127 (248)
T ss_pred ccceeeEEeehhhccchhhhhhhcCchh-hhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHh
Confidence 3567889999999999999877431000 0011 345699999999999999998 57899999999988888888
Q ss_pred HHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC-ccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 105 VEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 105 ~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~-fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...|+....+. ...+.+..++|+.........+. ||+|+++|++|.++..+.++.+++.++..++.++++++.
T Consensus 128 ~~~~~~~l~~~------g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~l 201 (248)
T KOG2793|consen 128 RDKNNIALNQL------GGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPL 201 (248)
T ss_pred hhhhhhhhhhc------CCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEec
Confidence 77776543211 24789999999998876554555 999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHh---cCCeEEEe
Q 027594 184 RSTSVHEQMLQMWK---SNFNVKLV 205 (221)
Q Consensus 184 r~~~~~~~~~~~~~---~~f~v~~v 205 (221)
|.....+.+.-.++ ..|++...
T Consensus 202 r~~~~~~~~~~~~~~~~~~~~v~~~ 226 (248)
T KOG2793|consen 202 RRDAAWEIEVLLFKKDLKIFDVVQE 226 (248)
T ss_pred ccchHHHHHHHHhhhhhccceeeeE
Confidence 98754444333332 35555433
|
|
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-19 Score=136.39 Aligned_cols=157 Identities=23% Similarity=0.375 Sum_probs=121.5
Q ss_pred CCCCCCCcceEEEEEcCeEEEEeeCCC--------CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCc
Q 027594 4 DRLNSPSTSVINLEVLGHQLQFSQDPN--------SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC 75 (221)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~ 75 (221)
++...|.-.++.+...+..-...+... ...++...|.++..+|+|+..+ |...+||+|||+|+|+
T Consensus 18 ~~~p~p~~Pe~rl~la~~~~~l~~~~~e~l~~ig~pPpfwa~~WagG~~lAR~i~~~-------PetVrgkrVLd~gags 90 (218)
T COG3897 18 GLLPPPHVPEIRLHLADEAHELWDRAKEELRLIGLPPPFWAFAWAGGQVLARYIDDH-------PETVRGKRVLDLGAGS 90 (218)
T ss_pred ccCCCCCCchhheeecccccchHhHhHHHHHhcCCCchHHHHHHhhhHHHHHHHhcC-------ccccccceeeeccccc
Confidence 344455555566655443322222211 2347889999999999999999 8899999999999999
Q ss_pred cHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEccc
Q 027594 76 GVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV 153 (221)
Q Consensus 76 G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~ 153 (221)
|++++++++.|++ |+++|+ +..++.++.|++.|+. .+.+...|... .+..||+|+++|+
T Consensus 91 gLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-------------~i~~~~~d~~g------~~~~~Dl~LagDl 151 (218)
T COG3897 91 GLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-------------SILFTHADLIG------SPPAFDLLLAGDL 151 (218)
T ss_pred ChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-------------eeEEeeccccC------CCcceeEEEeece
Confidence 9999999999996 999998 6689999999999985 45555533322 3678999999999
Q ss_pred ccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 154 VYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 154 ~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
+|+......++.+..++...|-.+++..+.|..
T Consensus 152 fy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 152 FYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred ecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 999999999999777777777778777777664
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-19 Score=131.99 Aligned_cols=154 Identities=26% Similarity=0.370 Sum_probs=118.1
Q ss_pred cccc-eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCC-ccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHH
Q 027594 33 HLGT-TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAG-CGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 33 ~~g~-~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG-~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~ 107 (221)
++|. .+||++.+||.++.++ +..++|++|||||.| ||+.|+.+|... ..|..||. .++++..++-.-.
T Consensus 4 ntgnvciwpseeala~~~l~~-------~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~ 76 (201)
T KOG3201|consen 4 NTGNVCIWPSEEALAWTILRD-------PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS 76 (201)
T ss_pred CCCcEEecccHHHHHHHHHhc-------hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc
Confidence 3454 5999999999999988 678899999999999 499999998654 46999997 5589888887777
Q ss_pred hhhccccCCCCCCCCCceEEEEEEecCCCC-ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 108 NTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 108 n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
|... ....+. .+.|..... .......||+|+++||+|..+..+.|++++.++|+|.|..++..+.|..
T Consensus 77 n~~s---------~~tsc~--vlrw~~~~aqsq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 77 NMAS---------SLTSCC--VLRWLIWGAQSQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred cccc---------ccceeh--hhHHHHhhhHHHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 6431 012232 333332221 2233568999999999999999999999999999999998887776655
Q ss_pred hHHHHHHHHHh-cCCeEEEe
Q 027594 187 SVHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 187 ~~~~~~~~~~~-~~f~v~~v 205 (221)
..++|.+..+ .+|.+..-
T Consensus 146 -sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201|consen 146 -SLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred -hHHHHHHHHHhceeEEEec
Confidence 5788998886 48888643
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-18 Score=137.62 Aligned_cols=109 Identities=21% Similarity=0.265 Sum_probs=92.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++|++|||+|||-|+++..+|++|++||++|. +++++.++..+.++++ .+.+... ..+++...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv-------------~i~y~~~---~~edl~~~ 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV-------------NIDYRQA---TVEDLASA 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc-------------cccchhh---hHHHHHhc
Confidence 68999999999999999999999999999998 5599999999998876 2333331 11222223
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
.++||+|++.+++.|.++.+.+++.|.+++||||.++++..+|+..
T Consensus 122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 4799999999999999999999999999999999999999998853
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=136.64 Aligned_cols=150 Identities=13% Similarity=0.103 Sum_probs=109.4
Q ss_pred ceEEEEEcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEE
Q 027594 12 SVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNV 89 (221)
Q Consensus 12 ~~~~~~~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v 89 (221)
..++..+.+..+++...++.+..+ .+=.++.+|.+++.. . .+.+|||||||+|.+++.+++.+ ++|
T Consensus 188 ~~~~~~~~~~~~~~~~~~gVFs~~-~LD~GtrllL~~lp~----------~-~~~~VLDLGCGtGvi~i~la~~~P~~~V 255 (378)
T PRK15001 188 QTVSWKLEGTDWTIHNHANVFSRT-GLDIGARFFMQHLPE----------N-LEGEIVDLGCGNGVIGLTLLDKNPQAKV 255 (378)
T ss_pred ceeEEEEcCceEEEEecCCccCCC-CcChHHHHHHHhCCc----------c-cCCeEEEEeccccHHHHHHHHhCCCCEE
Confidence 356777889999999999877633 455666666666632 2 23599999999999999999874 689
Q ss_pred EEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC-----cCHHHH
Q 027594 90 ITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLEPL 163 (221)
Q Consensus 90 ~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~-----~~~~~l 163 (221)
+++|.+ .+++.+++|++.|+.. ...++++...|. ... ....+||+|++|++++.. .....+
T Consensus 256 ~~vD~S~~Av~~A~~N~~~n~~~---------~~~~v~~~~~D~---l~~-~~~~~fDlIlsNPPfh~~~~~~~~ia~~l 322 (378)
T PRK15001 256 VFVDESPMAVASSRLNVETNMPE---------ALDRCEFMINNA---LSG-VEPFRFNAVLCNPPFHQQHALTDNVAWEM 322 (378)
T ss_pred EEEECCHHHHHHHHHHHHHcCcc---------cCceEEEEEccc---ccc-CCCCCEEEEEECcCcccCccCCHHHHHHH
Confidence 999985 5999999999988641 012455554332 111 123589999999997653 235678
Q ss_pred HHHHHHhcCCCeEEEEEEEecChh
Q 027594 164 LQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 164 ~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
+..+.++|+|||.++++. .|...
T Consensus 323 ~~~a~~~LkpGG~L~iV~-nr~l~ 345 (378)
T PRK15001 323 FHHARRCLKINGELYIVA-NRHLD 345 (378)
T ss_pred HHHHHHhcccCCEEEEEE-ecCcC
Confidence 888999999999999985 44443
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-16 Score=123.92 Aligned_cols=138 Identities=20% Similarity=0.224 Sum_probs=103.3
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
+.+|.+++.. .++++|||+|||+|..++.++..+.+|+++|. +++++.+++|++.++.
T Consensus 8 ~~~l~~~l~~-----------~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------- 66 (179)
T TIGR00537 8 SLLLEANLRE-----------LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV---------- 66 (179)
T ss_pred HHHHHHHHHh-----------cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence 4566666642 35678999999999999999998889999998 6699999999988763
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC---------------------HHHHHHHHHHhcCCCeEEEE
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------LEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~---------------------~~~l~~~~~~ll~~~g~~~i 179 (221)
++.+...|+.+. ...+||+|+++++++.... ...+++.+.++|+|||.+++
T Consensus 67 ---~~~~~~~d~~~~-----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 67 ---GLDVVMTDLFKG-----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred ---ceEEEEcccccc-----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence 466666665432 2358999999988764321 46688899999999999988
Q ss_pred EEEecChhHHHHHHHHHh-cCCeEEEecCCCC
Q 027594 180 GYEIRSTSVHEQMLQMWK-SNFNVKLVPKAKE 210 (221)
Q Consensus 180 ~~~~r~~~~~~~~~~~~~-~~f~v~~v~~~~~ 210 (221)
........ ..+++.++ .+|.++.+....+
T Consensus 139 ~~~~~~~~--~~~~~~l~~~gf~~~~~~~~~~ 168 (179)
T TIGR00537 139 IQSSLNGE--PDTFDKLDERGFRYEIVAERGL 168 (179)
T ss_pred EEeccCCh--HHHHHHHHhCCCeEEEEEEeec
Confidence 77654422 44555554 5898887766554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-16 Score=129.49 Aligned_cols=158 Identities=22% Similarity=0.278 Sum_probs=111.7
Q ss_pred EcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecch
Q 027594 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQI 95 (221)
Q Consensus 18 ~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~~ 95 (221)
..+.++++...|+.+..+ .+-.++.+|.+-+. ....+ +|||||||.|.+|+.+++... ++|++|.+
T Consensus 124 ~~~~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~----------~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn 191 (300)
T COG2813 124 LLGHELTFKTLPGVFSRD-KLDKGSRLLLETLP----------PDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVN 191 (300)
T ss_pred hccCceEEEeCCCCCcCC-CcChHHHHHHHhCC----------ccCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEecC
Confidence 348899999999877644 44455666666553 33344 999999999999999999864 79999986
Q ss_pred h-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC-----HHHHHHHHHH
Q 027594 96 E-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----LEPLLQTIFA 169 (221)
Q Consensus 96 ~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~-----~~~l~~~~~~ 169 (221)
. +++.+++|+..|+. ++..+... +.. .. ...+||.||+|||++.-.. ...++....+
T Consensus 192 ~~Av~~ar~Nl~~N~~------------~~~~v~~s---~~~-~~-v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~ 254 (300)
T COG2813 192 ARAVESARKNLAANGV------------ENTEVWAS---NLY-EP-VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAAR 254 (300)
T ss_pred HHHHHHHHHhHHHcCC------------CccEEEEe---ccc-cc-ccccccEEEeCCCccCCcchhHHHHHHHHHHHHH
Confidence 5 99999999999986 22222221 111 11 2348999999999996322 3368888899
Q ss_pred hcCCCeEEEEEEEecChhHHHHHHHHHhcCC-eEEEecCCC
Q 027594 170 LSGPKTTILLGYEIRSTSVHEQMLQMWKSNF-NVKLVPKAK 209 (221)
Q Consensus 170 ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f-~v~~v~~~~ 209 (221)
.|++||.++|+.. +...... .+++.| .++.+....
T Consensus 255 ~L~~gGeL~iVan-~~l~y~~----~L~~~Fg~v~~la~~~ 290 (300)
T COG2813 255 HLKPGGELWIVAN-RHLPYEK----KLKELFGNVEVLAKNG 290 (300)
T ss_pred hhccCCEEEEEEc-CCCChHH----HHHHhcCCEEEEEeCC
Confidence 9999999999876 5544333 334444 356555544
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=131.50 Aligned_cols=156 Identities=20% Similarity=0.301 Sum_probs=111.7
Q ss_pred CeEEEEeeCCC-CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hh
Q 027594 20 GHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IE 96 (221)
Q Consensus 20 ~~~~~i~~~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~ 96 (221)
...+.|..+|+ .+++|.+ +.+.+..+++... ..++++|||+|||+|.+++.++++|+ +|+++|+ +.
T Consensus 125 ~~~~~i~ldpg~aFgtG~h--~tt~l~l~~l~~~---------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~ 193 (288)
T TIGR00406 125 EDALIIMLDPGLAFGTGTH--PTTSLCLEWLEDL---------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPL 193 (288)
T ss_pred CCcEEEEECCCCcccCCCC--HHHHHHHHHHHhh---------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHH
Confidence 45567777884 3556544 7777777777643 33678999999999999999999887 6999998 56
Q ss_pred hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeE
Q 027594 97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~ 176 (221)
+++.+++|+..|+. ..++.+...+ . ......+||+|+++-+ ...+..++..+.++|+|||.
T Consensus 194 al~~a~~n~~~n~~-----------~~~~~~~~~~---~--~~~~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~ 254 (288)
T TIGR00406 194 AVESARKNAELNQV-----------SDRLQVKLIY---L--EQPIEGKADVIVANIL---AEVIKELYPQFSRLVKPGGW 254 (288)
T ss_pred HHHHHHHHHHHcCC-----------CcceEEEecc---c--ccccCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcE
Confidence 99999999999875 2344444322 1 1123568999998743 34456788999999999999
Q ss_pred EEEEEEecChhHHHHHHHHHhcCCeEEEecC
Q 027594 177 ILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK 207 (221)
Q Consensus 177 ~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~ 207 (221)
++++...... ...+.+.++++|++..+..
T Consensus 255 li~sgi~~~~--~~~v~~~~~~~f~~~~~~~ 283 (288)
T TIGR00406 255 LILSGILETQ--AQSVCDAYEQGFTVVEIRQ 283 (288)
T ss_pred EEEEeCcHhH--HHHHHHHHHccCceeeEec
Confidence 9997765443 3555666665687765543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-17 Score=117.04 Aligned_cols=104 Identities=23% Similarity=0.286 Sum_probs=83.5
Q ss_pred CCCeEEEeCCCccHHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~--~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||||||+|..++.+++ .+++|+++|+ +++++.+++++..... .+++++...|+ .. ...
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~i~~~~~d~-~~--~~~ 66 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----------SDRITFVQGDA-EF--DPD 66 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----------TTTEEEEESCC-HG--GTT
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECcc-cc--Ccc
Confidence 468999999999999999998 6889999998 6699999999966554 57899999777 11 112
Q ss_pred cCCCccEEEEcc-cccC---CcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGTD-VVYA---EHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~d-~~y~---~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
...+||+|+++. +..+ .+....+++.+.++|+|||++++..
T Consensus 67 ~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 67 FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 356799999988 3321 2456788999999999999998864
|
... |
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.2e-16 Score=132.23 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=89.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||||||+|.++..+++.|++|+++|. +++++.+++++..+.. ..++.+...+. ..+...
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----------~~~i~~~~~da---e~l~~~ 195 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV-----------TSTIEYLCTTA---EKLADE 195 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-----------ccceeEEecCH---HHhhhc
Confidence 46789999999999999999999999999998 6699999988765442 24567766433 233334
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.++||+|++.+++++..+...+++.+.++|+|||.+++....+.
T Consensus 196 ~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 57899999999999999999999999999999999999876543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.9e-15 Score=120.71 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=107.7
Q ss_pred EEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHH
Q 027594 23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL 100 (221)
Q Consensus 23 ~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~ 100 (221)
+++.+.++.+.... .+.++++++... ...++.+|||+|||+|..++.+++.++ +|+++|. +.+++.
T Consensus 7 ~~~~~~~g~~~p~~----ds~~l~~~l~~~--------~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~ 74 (223)
T PRK14967 7 DALLRAPGVYRPQE----DTQLLADALAAE--------GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS 74 (223)
T ss_pred ceeecCCCCcCCCC----cHHHHHHHHHhc--------ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence 34555554333222 367788887643 234578999999999999999998876 8999998 569999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC---------------------
Q 027594 101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------- 159 (221)
Q Consensus 101 ~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~--------------------- 159 (221)
+++|++.++. ++.+...|+.+. ....+||+|+++++++....
T Consensus 75 a~~n~~~~~~-------------~~~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (223)
T PRK14967 75 ARLNALLAGV-------------DVDVRRGDWARA----VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAV 137 (223)
T ss_pred HHHHHHHhCC-------------eeEEEECchhhh----ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHH
Confidence 9999988764 356666665432 12468999999987654321
Q ss_pred HHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEecCC
Q 027594 160 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKA 208 (221)
Q Consensus 160 ~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~~ 208 (221)
+..+++.+.++|+|||++++....... ...+++.++ .+|.++.+...
T Consensus 138 ~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~~~~~~~l~~~g~~~~~~~~~ 185 (223)
T PRK14967 138 LDRLCDAAPALLAPGGSLLLVQSELSG--VERTLTRLSEAGLDAEVVASQ 185 (223)
T ss_pred HHHHHHHHHHhcCCCcEEEEEEecccC--HHHHHHHHHHCCCCeEEEEee
Confidence 456778888999999999887655432 234555554 46776665443
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.3e-16 Score=117.30 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=91.8
Q ss_pred CCCeEEEeCCCccHHHHHHH-Hh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMA-LL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a-~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||||||+|..+..++ .. +++++++|+ +++++.++++++.++. +++++...|+.+....
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------------~ni~~~~~d~~~l~~~- 69 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------------DNIEFIQGDIEDLPQE- 69 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------------TTEEEEESBTTCGCGC-
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------------cccceEEeehhccccc-
Confidence 56899999999999999999 44 678999998 6699999999998875 4899999777652211
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
. ..+||+|+++.++++......+++.+.++|+++|.+++........
T Consensus 70 ~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~ 116 (152)
T PF13847_consen 70 L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE 116 (152)
T ss_dssp S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence 2 2799999999999999999999999999999999999988774433
|
... |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-16 Score=126.17 Aligned_cols=111 Identities=19% Similarity=0.300 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEE-EEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-ELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~-~~dw~~~~~~~~ 140 (221)
+.|++|||+|||+|+++..+|++|+.|+++|. ++|++.|++....+-.. ...+.+. ..+-...+ .
T Consensus 88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~----------~~~~~y~l~~~~~~~E---~ 154 (282)
T KOG1270|consen 88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVL----------EGAIAYRLEYEDTDVE---G 154 (282)
T ss_pred cCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchh----------ccccceeeehhhcchh---h
Confidence 45789999999999999999999999999998 66999999874332210 1122111 11111212 1
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
..++||.|++++++.|..+...++..+.++|+|+|.++++...|.-
T Consensus 155 ~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~ 200 (282)
T KOG1270|consen 155 LTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI 200 (282)
T ss_pred cccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence 2456999999999999999999999999999999999999887763
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.2e-15 Score=121.80 Aligned_cols=150 Identities=22% Similarity=0.338 Sum_probs=107.2
Q ss_pred CeEEEEeeCCC-CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hh
Q 027594 20 GHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IE 96 (221)
Q Consensus 20 ~~~~~i~~~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~ 96 (221)
...+.|..+|+ ++++|. ++.+..+.+++... ..++++|||+|||+|.+++.+++.|+. |+++|+ +.
T Consensus 85 ~~~~~i~i~p~~afgtg~--h~tt~~~l~~l~~~---------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~ 153 (250)
T PRK00517 85 PDEINIELDPGMAFGTGT--HPTTRLCLEALEKL---------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQ 153 (250)
T ss_pred CCeEEEEECCCCccCCCC--CHHHHHHHHHHHhh---------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHH
Confidence 44556777774 455554 67777877777643 346789999999999999999988875 999998 56
Q ss_pred hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeE
Q 027594 97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~ 176 (221)
+++.+++|++.|++ ...+.+.. + +.+||+|+++-. .+.+..++..+.++|+|||.
T Consensus 154 ~l~~A~~n~~~~~~-----------~~~~~~~~---~--------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~ 208 (250)
T PRK00517 154 AVEAARENAELNGV-----------ELNVYLPQ---G--------DLKADVIVANIL---ANPLLELAPDLARLLKPGGR 208 (250)
T ss_pred HHHHHHHHHHHcCC-----------CceEEEcc---C--------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcE
Confidence 99999999998875 12232221 0 127999998732 34467788899999999999
Q ss_pred EEEEEEecChhHHHHHHHHHh-cCCeEEEecC
Q 027594 177 ILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 207 (221)
Q Consensus 177 ~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~ 207 (221)
++++...... ...+.+.++ .+|.+..+..
T Consensus 209 lilsgi~~~~--~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 209 LILSGILEEQ--ADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred EEEEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence 9987654433 244555554 4788766544
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-14 Score=113.67 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=92.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++++|||+|||+|..++.++..+ ++|+++|. +++++.+++|++.++. +++++...|+.+. .
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------------~~i~~i~~d~~~~---~- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------------NNVEIVNGRAEDF---Q- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------------CCeEEEecchhhc---c-
Confidence 57899999999999999988764 57999998 5699999999988764 4588888776543 1
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-hcCCeEEEecCCCC
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE 210 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~~~ 210 (221)
..++||+|+++. ...++.+++.+.++|+|||.+++..............+.+ ..+|+......-..
T Consensus 106 ~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 106 HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 256899999865 2457788899999999999988865433332222333332 24777666554443
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=123.56 Aligned_cols=108 Identities=22% Similarity=0.263 Sum_probs=89.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..++.+++.|.+|+++|. +++++.+++++...+. .+++++...+..+... ...
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~~~v~~~~~d~~~l~~--~~~ 110 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV-----------SDNMQFIHCAAQDIAQ--HLE 110 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccceEEEEcCHHHHhh--hcC
Confidence 4579999999999999999999999999998 6699999999887764 3567777765544321 235
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
++||+|+++.++++..+...+++.+.++|+|||.+++.....
T Consensus 111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence 689999999999998888999999999999999998876543
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=113.26 Aligned_cols=143 Identities=20% Similarity=0.261 Sum_probs=102.5
Q ss_pred cchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCC
Q 027594 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
++.+.++++++.. .++++|||+|||+|..++.++..+++|+++|. +++++.+++|+..++..
T Consensus 9 ~~~~~~l~~~~~~-----------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------ 71 (188)
T PRK14968 9 AEDSFLLAENAVD-----------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR------ 71 (188)
T ss_pred chhHHHHHHhhhc-----------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC------
Confidence 4567777777753 36789999999999999999988999999998 56999999999887641
Q ss_pred CCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC---------------------cCHHHHHHHHHHhcCCCeE
Q 027594 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~---------------------~~~~~l~~~~~~ll~~~g~ 176 (221)
...+.+...|+.+.. ...+||+|+++++++.. .....+++.+.++|+|+|.
T Consensus 72 ----~~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~ 143 (188)
T PRK14968 72 ----NNGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR 143 (188)
T ss_pred ----CcceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence 111666666664422 23489999999886641 1245688999999999999
Q ss_pred EEEEEEecChhHHHHHHHHHh-cCCeEEEecCC
Q 027594 177 ILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKA 208 (221)
Q Consensus 177 ~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~~ 208 (221)
+++....... .+.+.+.+. .+|++..+...
T Consensus 144 ~~~~~~~~~~--~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 144 ILLLQSSLTG--EDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred EEEEEcccCC--HHHHHHHHHHCCCeeeeeeec
Confidence 8876653322 234455554 47877665443
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-15 Score=117.83 Aligned_cols=107 Identities=14% Similarity=0.202 Sum_probs=92.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+|.+|||+|||||-.++.+++.. ++|+++|+ +.|++.+++.+..-+. ..+.++. ++.+.++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------------~~i~fv~---~dAe~LPf 115 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------------QNVEFVV---GDAENLPF 115 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------------cceEEEE---echhhCCC
Confidence 78999999999999999999875 68999998 5599999998876543 2377777 56677788
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
++++||+|.++-.+.+..+.+..++++.|+|||||++++....+.
T Consensus 116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence 899999999999999999999999999999999999887665543
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=117.94 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=82.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+|.+|||+|||||..+..+++. + .+|+++|. ++|++.+++++...+. .+|++.. ++.+.+
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------------~~i~~v~---~da~~l 110 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------------QNIEFVQ---GDAEDL 110 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE----BTTB-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------------CCeeEEE---cCHHHh
Confidence 36789999999999999999875 3 47999998 5699999999987664 4788887 555566
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
+..+++||+|+++-.+.+..+....++++.++|||||++.+....+..
T Consensus 111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 667899999999999999899999999999999999999887766554
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-15 Score=116.81 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=82.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..++.+|+.|.+|+++|. +++++.++++++.++. .++++...|+... .. .
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~---~~-~ 93 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL------------DNLHTAVVDLNNL---TF-D 93 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CcceEEecChhhC---Cc-C
Confidence 5679999999999999999999999999998 5699999999887764 3466666555432 12 4
Q ss_pred CCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEE
Q 027594 143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.+||+|+++.++++. .....+++.+.++|+|||.+++.
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 579999999998763 36789999999999999996543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=123.75 Aligned_cols=105 Identities=15% Similarity=0.073 Sum_probs=88.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||||||+|..+..+++. |++|+++|+ +.+++.++++++.++. .+++.+...|..+ .+.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----------~~~v~~~~~D~~~---~~~ 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----------SDKVSFQVADALN---QPF 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcCccc---CCC
Confidence 46789999999999999999875 889999998 5599999999887764 3568887765533 334
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..++||+|++..++++..+...+++.+.++|+|||.++++.
T Consensus 183 ~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 183 EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 46799999999999998889999999999999999998865
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-14 Score=112.07 Aligned_cols=120 Identities=19% Similarity=0.206 Sum_probs=89.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|..++.+++. +++|+++|. +++++.+++|++.++. +++++...+..+. ..
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------------~~i~~~~~d~~~~---~~ 109 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------------KNVTVVHGRAEEF---GQ 109 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------------CCEEEEeccHhhC---CC
Confidence 3789999999999999998864 568999998 5699999999999875 3488887665442 22
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~ 206 (221)
.++||+|+++. ...++.+++.+.++|+|||++++....... ..+.+..+ .++.++.+.
T Consensus 110 -~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~~~~---~~l~~~~~~~~~~~~~~~ 168 (187)
T PRK00107 110 -EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGRDPE---EEIAELPKALGGKVEEVI 168 (187)
T ss_pred -CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCCChH---HHHHHHHHhcCceEeeeE
Confidence 56899999874 256789999999999999999887654332 23333322 367665443
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=114.63 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=79.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..++.+++.|.+|+++|. +.+++.++++++.+++ ++.....|.... . ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~---~-~~ 92 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL-------------PLRTDAYDINAA---A-LN 92 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC-------------CceeEeccchhc---c-cc
Confidence 4579999999999999999999999999998 5699999998887664 244444443221 1 13
Q ss_pred CCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEE
Q 027594 143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
++||+|+++.++++. +....+++.+.++|+|||.+++.
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 579999999988764 46788999999999999996654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-15 Score=102.70 Aligned_cols=93 Identities=17% Similarity=0.287 Sum_probs=76.1
Q ss_pred EEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCcc
Q 027594 69 IELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146 (221)
Q Consensus 69 LelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD 146 (221)
||+|||+|..+..+++. +.+|+++|. +++++.++++....+ +.+... +....+.++++||
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~---------------~~~~~~---d~~~l~~~~~sfD 62 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG---------------VSFRQG---DAEDLPFPDNSFD 62 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST---------------EEEEES---BTTSSSS-TT-EE
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC---------------chheee---hHHhCcccccccc
Confidence 89999999999999998 789999998 558999888766543 345553 3444556688999
Q ss_pred EEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 147 ~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
+|+++.++++.++...+++.+.++|||||.+++
T Consensus 63 ~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 63 VVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 999999999999999999999999999999875
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-14 Score=120.42 Aligned_cols=131 Identities=14% Similarity=0.098 Sum_probs=94.5
Q ss_pred EEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecch-hhH
Q 027594 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQI-EVL 98 (221)
Q Consensus 22 ~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~~-~~l 98 (221)
.+++...|+.+..+ .+-.++.+|.+.+.. . ...+|||||||+|.+++.+++.+ .+|+++|.+ .++
T Consensus 166 ~l~i~~~pgvFs~~-~lD~gt~lLl~~l~~----------~-~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al 233 (342)
T PRK09489 166 GLTVKTLPGVFSRD-GLDVGSQLLLSTLTP----------H-TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL 233 (342)
T ss_pred CEEEEeCCCCCCCC-CCCHHHHHHHHhccc----------c-CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 46777778765532 233445555555532 1 23489999999999999999875 479999984 599
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC-----CcCHHHHHHHHHHhcCC
Q 027594 99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGP 173 (221)
Q Consensus 99 ~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~-----~~~~~~l~~~~~~ll~~ 173 (221)
+.+++|++.|++ ...+...|. .. ...++||+|+++++++. ......+++.+.++|+|
T Consensus 234 ~~A~~nl~~n~l-------------~~~~~~~D~---~~--~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp 295 (342)
T PRK09489 234 ESSRATLAANGL-------------EGEVFASNV---FS--DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS 295 (342)
T ss_pred HHHHHHHHHcCC-------------CCEEEEccc---cc--ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc
Confidence 999999999875 123333222 11 12568999999999875 23468899999999999
Q ss_pred CeEEEEEEE
Q 027594 174 KTTILLGYE 182 (221)
Q Consensus 174 ~g~~~i~~~ 182 (221)
||.++++..
T Consensus 296 gG~L~iVan 304 (342)
T PRK09489 296 GGELRIVAN 304 (342)
T ss_pred CCEEEEEEe
Confidence 999998764
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-13 Score=118.78 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=97.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-ccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~ 140 (221)
++++|||+|||||.+++.++..|+ +|+++|. +.+++.+++|++.|++. .+++++...|..+... ...
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----------~~~v~~i~~D~~~~l~~~~~ 289 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CCcEEEEEccHHHHHHHHHh
Confidence 678999999999999998887776 7999998 56999999999999861 1367888766543211 111
Q ss_pred cCCCccEEEEcccccCCc---------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-----hcCCeEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLVP 206 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~---------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-----~~~f~v~~v~ 206 (221)
...+||+|++++|.+..+ .+..++....++|+|||.++.+.....-. .+.|.+.. +.+-++..+.
T Consensus 290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~-~~~f~~~v~~aa~~~~~~~~~l~ 368 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT-SDLFQKIIADAAIDAGRDVQFIE 368 (396)
T ss_pred cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC-HHHHHHHHHHHHHHcCCeEEEEE
Confidence 245899999998876543 35566667788999999988765433222 23333333 2355666665
Q ss_pred CCCCCcccC
Q 027594 207 KAKESTMWG 215 (221)
Q Consensus 207 ~~~~~~~~~ 215 (221)
.....+.+.
T Consensus 369 ~~~~~~DhP 377 (396)
T PRK15128 369 QFRQAADHP 377 (396)
T ss_pred EcCCCCCCC
Confidence 555555544
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-14 Score=118.69 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=86.7
Q ss_pred ecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecch-hhHHHHHHHHHHhhhccccC
Q 027594 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQM 115 (221)
Q Consensus 38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~ 115 (221)
-|.+.....+.+..- ...+|++|||+|||+|..+..++..|+ +|+++|.+ .++..++........
T Consensus 103 e~~s~~~~~~~l~~l--------~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~----- 169 (314)
T TIGR00452 103 EWRSDIKWDRVLPHL--------SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN----- 169 (314)
T ss_pred HHHHHHHHHHHHHhc--------CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-----
Confidence 466555545444321 456789999999999999999988887 59999974 477654332221110
Q ss_pred CCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 116 ~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..++.+..++..+. +. ..+||+|+++.++|+..+...+++.+.++|+|||.+++..
T Consensus 170 ------~~~v~~~~~~ie~l---p~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 170 ------DKRAILEPLGIEQL---HE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred ------CCCeEEEECCHHHC---CC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 23456665444332 22 3489999999999999999999999999999999998753
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-13 Score=112.46 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=99.8
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
.+..|.+++..... ....+.+|||+|||+|.+++.+++. +.+|+++|. +.+++.+++|+..|+
T Consensus 69 ~Te~Lv~~~l~~~~------~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~-------- 134 (251)
T TIGR03704 69 RTEFLVDEAAALAR------PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG-------- 134 (251)
T ss_pred cHHHHHHHHHHhhc------ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence 35666666654321 1113458999999999999999865 458999998 669999999998775
Q ss_pred CCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc--------------------------CHHHHHHHHHHhc
Q 027594 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALS 171 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~--------------------------~~~~l~~~~~~ll 171 (221)
+++...|+.+.... ....+||+|++++|+.... .+..++..+.++|
T Consensus 135 -------~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L 206 (251)
T TIGR03704 135 -------GTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL 206 (251)
T ss_pred -------CEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 25566666432211 1135799999999865321 1346777788999
Q ss_pred CCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEecCCCC
Q 027594 172 GPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAKE 210 (221)
Q Consensus 172 ~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~~~~ 210 (221)
+|||.+++.+..... ......++ .+|....+..+++
T Consensus 207 ~~gG~l~l~~~~~~~---~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 207 APGGHLLVETSERQA---PLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred CCCCEEEEEECcchH---HHHHHHHHHCCCCceeeEcccc
Confidence 999999987654332 34555554 5788877776665
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-14 Score=105.40 Aligned_cols=106 Identities=21% Similarity=0.230 Sum_probs=84.1
Q ss_pred CCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 65 GKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
|.+|||+|||+|..++.+++.+ .+++++|+ +.+++.+++|+..++. .+++++...|+.+... ....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----------~~~~~~~~~D~~~~~~-~~~~ 68 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----------DDRVEVIVGDARDLPE-PLPD 68 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----------TTTEEEEESHHHHHHH-TCTT
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----------CceEEEEECchhhchh-hccC
Confidence 4689999999999999999998 78999998 6699999999999875 4678888877654431 1346
Q ss_pred CCccEEEEcccccCCc--------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~--------~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+||+|++++++.... ....+++.+.++|+|+|.+++..+
T Consensus 69 ~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 69 GKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp T-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8999999999987531 356789999999999999988654
|
... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=113.48 Aligned_cols=103 Identities=22% Similarity=0.316 Sum_probs=79.9
Q ss_pred eEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
+|||||||||.+++.+++.+. +|+++|+ +++++.|++|+..|++ .++.+...||-... .+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------------~~~~~~~~dlf~~~-----~~ 175 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------------VRVLVVQSDLFEPL-----RG 175 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------------ccEEEEeeeccccc-----CC
Confidence 899999999999999998875 8999998 6799999999999985 34555555775432 34
Q ss_pred CccEEEEcccccCCc-------------------------CHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 144 PFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~-------------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
+||+|++|+|+-..+ ....++..+...|+|+|.+++-......
T Consensus 176 ~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~~q~ 243 (280)
T COG2890 176 KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQG 243 (280)
T ss_pred ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECCCcH
Confidence 999999999965432 2455777778889999988775554443
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.5e-14 Score=117.93 Aligned_cols=105 Identities=20% Similarity=0.219 Sum_probs=80.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++++|||||||+|..++.++..|++ |+++|.+ .++...+......+. ..++.+...+..+. +
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-----------~~~i~~~~~d~e~l---p 185 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-----------DQRAHLLPLGIEQL---P 185 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCCHHHC---C
Confidence 457899999999999999999998874 9999974 365443322211111 23577777555333 3
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. .++||+|++..++|+..+...+++.+.+.|+|||.+++..
T Consensus 186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 3 5789999999999999999999999999999999998753
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-14 Score=117.51 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=81.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++++|||+|||+|..++.+++.|.+|+++|. +.+++.++++++.+++ ++.+...|.... . ..
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-------------~v~~~~~D~~~~---~-~~ 182 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-------------NIRTGLYDINSA---S-IQ 182 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEechhcc---c-cc
Confidence 4569999999999999999999999999998 5699999999887764 455555444322 1 25
Q ss_pred CCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
++||+|+++.++++. +....+++.+.++|+|||.+++..
T Consensus 183 ~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 183 EEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 689999999988763 468889999999999999966643
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=108.21 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=84.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|.+++.+++.+ .+|+++|. +++++.+++|++.++. .++++...+.. . .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------------~~i~~~~~d~~---~--~ 93 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------------GNIDIIPGEAP---I--E 93 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CCeEEEecCch---h--h
Confidence 67799999999999999999874 57999998 6699999999998764 35666654321 1 1
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCe
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN 201 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~ 201 (221)
...+||+|+++... ..+..+++.+.+.|+|||.+++....... ...+.+.++ .+|.
T Consensus 94 ~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~~~~~l~~~g~~ 150 (187)
T PRK08287 94 LPGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFILLEN--LHSALAHLEKCGVS 150 (187)
T ss_pred cCcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEecHhh--HHHHHHHHHHCCCC
Confidence 23579999987542 34678899999999999999875533222 244444453 3553
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-13 Score=112.33 Aligned_cols=110 Identities=19% Similarity=0.134 Sum_probs=85.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+|||+|||||..+..+++. + .+|+++|. ++|++.++++...... ....++++...|. ..+
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---------~~~~~i~~~~~d~---~~l 139 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---------SCYKNIEWIEGDA---TDL 139 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---------ccCCCeEEEEccc---ccC
Confidence 35789999999999999988865 4 48999998 5699999876542110 0024677777554 334
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
+..+++||+|+++.++++..+...+++.+.++|+|||.+++....+
T Consensus 140 p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 140 PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence 4456789999999999998899999999999999999998876544
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=105.42 Aligned_cols=77 Identities=34% Similarity=0.483 Sum_probs=66.1
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+.+|++|+|||||||.+|+.++.+|++ |+++|. +++++.+++|+.+.. .++.+...|..+.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-------------g~v~f~~~dv~~~--- 105 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-------------GDVEFVVADVSDF--- 105 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-------------CceEEEEcchhhc---
Confidence 6789999999999999999999999985 999998 789999999999843 5788888655433
Q ss_pred cccCCCccEEEEcccccC
Q 027594 139 KAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~ 156 (221)
..++|.++.|+|+-.
T Consensus 106 ---~~~~dtvimNPPFG~ 120 (198)
T COG2263 106 ---RGKFDTVIMNPPFGS 120 (198)
T ss_pred ---CCccceEEECCCCcc
Confidence 678999999999754
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.7e-14 Score=115.10 Aligned_cols=104 Identities=18% Similarity=0.241 Sum_probs=81.7
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
...+|.+|||||||.|.+++.+|+. |++|+++.. ++-.+.+++.++..++ .+++++...||.+.
T Consensus 59 ~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl-----------~~~v~v~~~D~~~~--- 124 (273)
T PF02353_consen 59 GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL-----------EDRVEVRLQDYRDL--- 124 (273)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS-----------SSTEEEEES-GGG----
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEeecccc---
Confidence 5668999999999999999999987 999999998 4588999999998876 56788888777544
Q ss_pred cccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..+||.|++-+++.+. ...+.+++.+.++|+|||.+++-.
T Consensus 125 ---~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 125 ---PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp -----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred ---CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3399999999999885 678999999999999999998643
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=107.95 Aligned_cols=103 Identities=24% Similarity=0.293 Sum_probs=79.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.++||||||.|..++.+|++|.+|+++|.+ .+++.+++-++..++ .|+....|.....
T Consensus 28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l-------------~i~~~~~Dl~~~~---- 90 (192)
T PF03848_consen 28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL-------------DIRTRVADLNDFD---- 90 (192)
T ss_dssp TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT--------------TEEEEE-BGCCBS----
T ss_pred hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc-------------eeEEEEecchhcc----
Confidence 3466799999999999999999999999999985 499998887777765 3677776654432
Q ss_pred cCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
....||+|++.-++++ .+..+.+++.+++.++|||+.++..
T Consensus 91 ~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 91 FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp -TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence 2468999998655554 6778899999999999999987744
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=113.04 Aligned_cols=105 Identities=16% Similarity=0.153 Sum_probs=82.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||||||+|..+..++. .+++|+++|. +.+++.++++.... +++.+...|.. ..+
T Consensus 50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~--------------~~i~~~~~D~~---~~~ 112 (263)
T PTZ00098 50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK--------------NKIEFEANDIL---KKD 112 (263)
T ss_pred CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcC--------------CceEEEECCcc---cCC
Confidence 45778999999999999988875 4779999998 56999888765431 35677765543 223
Q ss_pred ccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.+.++||+|++.+++++.. +...+++.+.++|+|||.+++....
T Consensus 113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~ 158 (263)
T PTZ00098 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC 158 (263)
T ss_pred CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 3467899999999887753 7889999999999999999987653
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-13 Score=112.91 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=91.1
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
...+|++|||||||.|.+++.+|+. |++|++++.+ +..+.+++.++..++ ..++++...||.+.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----------~~~v~v~l~d~rd~--- 134 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----------EDNVEVRLQDYRDF--- 134 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----------CcccEEEecccccc---
Confidence 5678999999999999999999976 8999999984 599999999998887 46899999899766
Q ss_pred cccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.++||-|++-+.+.+.. ..+.+++.+.++|+|||.+++-..
T Consensus 135 ---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I 177 (283)
T COG2230 135 ---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSI 177 (283)
T ss_pred ---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEe
Confidence 34599999999998754 499999999999999999887443
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.5e-13 Score=123.16 Aligned_cols=139 Identities=19% Similarity=0.145 Sum_probs=104.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++++|||||||||..++.+++.|+ +|+++|. +.+++.+++|++.|++. ..++++...|..+.. ...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----------~~~v~~i~~D~~~~l--~~~ 605 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----------GRQHRLIQADCLAWL--KEA 605 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----------ccceEEEEccHHHHH--HHc
Confidence 578999999999999999999888 4999998 55999999999999861 146888887653321 112
Q ss_pred CCCccEEEEcccccCCc-----------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-hcCCeEEEecCCC
Q 027594 142 APPFDYIIGTDVVYAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAK 209 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~-----------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~~ 209 (221)
..+||+|++++|.+... ....++..+.++|+|||.++++...+..... .+.+ +.++.+..+....
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~~ 682 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAKT 682 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecCC
Confidence 46899999998876421 3467888889999999999887655443322 2333 4589999998888
Q ss_pred CCcccCCC
Q 027594 210 ESTMWGNP 217 (221)
Q Consensus 210 ~~~~~~~~ 217 (221)
.+..|...
T Consensus 683 ~~~Dhp~~ 690 (702)
T PRK11783 683 LPPDFARN 690 (702)
T ss_pred CCCCCCCC
Confidence 87777543
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.51 E-value=3e-13 Score=109.38 Aligned_cols=105 Identities=14% Similarity=0.124 Sum_probs=84.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++++|||+|||+|..+..++.. + .+|+++|. +++++.+++++..++. +++.+...|... .
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~---~ 108 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------------HNVELVHGNAME---L 108 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------------CceEEEEechhc---C
Confidence 35789999999999999998865 3 58999998 5699999999876653 457776655433 2
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+...++||+|+++.++.+.+....+++.+.++|+|||.+++...
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 109 PFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred CCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence 23457899999998888888899999999999999999887653
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=104.05 Aligned_cols=99 Identities=24% Similarity=0.264 Sum_probs=79.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++++|||+|||+|..+..+++.|.+|+++|. +.+++. .+ +.....+ ......
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~~----------------~~~~~~~---~~~~~~ 74 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------RN----------------VVFDNFD---AQDPPF 74 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------TT----------------SEEEEEE---CHTHHC
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------hh----------------hhhhhhh---hhhhhc
Confidence 457889999999999999999999999999998 456665 11 1111211 112223
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
..++||+|++++++++..+...+++.+.++|+|||.+++....+.
T Consensus 75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 467999999999999999999999999999999999999998765
|
... |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-13 Score=108.05 Aligned_cols=125 Identities=17% Similarity=0.148 Sum_probs=95.3
Q ss_pred CeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++|||+|||+|..+..+++. +.+|+++|. +++++.+++++...+. .+++++...|..... ..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----------~~~i~~~~~d~~~~~----~~ 65 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----------QGRIRIFYRDSAKDP----FP 65 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC----CC
Confidence 47999999999999998876 368999998 5699999999887765 457788776654331 13
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC-------------hhHHHHHHHHHh-cCCeEEEe
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS-------------TSVHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~-------------~~~~~~~~~~~~-~~f~v~~v 205 (221)
.+||+|++..++++..+...+++.+.++|+|||.+++...... ......+.+.++ .+|++...
T Consensus 66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEe
Confidence 5899999999999988899999999999999999998754211 001244555554 47887544
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.5e-13 Score=113.97 Aligned_cols=136 Identities=16% Similarity=0.154 Sum_probs=94.9
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
+.+..+.+.+.+.. .++.+|||+|||+|.+++.+++. +++|+++|+ +++++.+++|++.++.
T Consensus 236 peTE~LVe~aL~~l---------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~------ 300 (423)
T PRK14966 236 PETEHLVEAVLARL---------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA------ 300 (423)
T ss_pred ccHHHHHHHhhhcc---------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------
Confidence 34667777776542 14569999999999999998865 568999998 5699999999988752
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc-------------------------CHHHHHHHHHHhc
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALS 171 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~-------------------------~~~~l~~~~~~ll 171 (221)
++++...||..... + ...+||+|++|+|+.... ....+++.+.++|
T Consensus 301 -------rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L 371 (423)
T PRK14966 301 -------RVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL 371 (423)
T ss_pred -------cEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence 67888877754321 1 135799999999854211 1346777778899
Q ss_pred CCCeEEEEEEEecChhHHHHHHHHHh-cCCeE
Q 027594 172 GPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV 202 (221)
Q Consensus 172 ~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v 202 (221)
+|+|.+++....... +...+.++ .+|..
T Consensus 372 kpgG~lilEiG~~Q~---e~V~~ll~~~Gf~~ 400 (423)
T PRK14966 372 AEGGFLLLEHGFDQG---AAVRGVLAENGFSG 400 (423)
T ss_pred CCCcEEEEEECccHH---HHHHHHHHHCCCcE
Confidence 999998775544333 33334443 46644
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.8e-13 Score=109.09 Aligned_cols=100 Identities=16% Similarity=0.118 Sum_probs=80.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..+..++..|.+|+++|. +++++.++++... ..+...|+.. .+...
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~-----------------~~~~~~d~~~---~~~~~ 101 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAA-----------------DHYLAGDIES---LPLAT 101 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCC-----------------CCEEEcCccc---CcCCC
Confidence 4679999999999999999988999999998 5699888875321 2334444432 33345
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|+++.++++..+...++..+.++|+|||.++++...
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 68999999999998889999999999999999999987543
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-13 Score=110.57 Aligned_cols=106 Identities=21% Similarity=0.210 Sum_probs=85.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.+++. +. +|+++|. +++++.+++|.+.++. +++++...++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------------~~v~~~~~d~~~--- 139 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------------TNVEFRLGEIEA--- 139 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------------CCEEEEEcchhh---
Confidence 347889999999999988877754 54 6999998 6699999999887664 467777655533
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
++...++||+|+++.++++..+...+++.+.++|+|||++++...
T Consensus 140 l~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 140 LPVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred CCCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence 233456899999998888888889999999999999999998643
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.6e-13 Score=110.69 Aligned_cols=104 Identities=15% Similarity=0.212 Sum_probs=81.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|.+++.+++. +++|+++|+ +.+++.+++|++.++. .+++.+...|+... .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----------~~~i~~~~~D~~~~--~-- 185 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIQSDLFAA--L-- 185 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhc--c--
Confidence 3468999999999999999986 468999998 5699999999999875 35688888776432 1
Q ss_pred cCCCccEEEEcccccCCc-------------------------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~-------------------------~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
...+||+|++++|+.... ....++..+.++|+|||.+++-..
T Consensus 186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g 252 (284)
T TIGR03533 186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG 252 (284)
T ss_pred CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 235799999998854321 135677888889999999887554
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.2e-13 Score=118.46 Aligned_cols=106 Identities=20% Similarity=0.271 Sum_probs=86.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||+|||+|..++.+++. +++|+++|+ +++++.+++|.... ..++.+...|+... +.
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------------~~~v~~~~~d~~~~---~~ 328 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------------KCSVEFEVADCTKK---TY 328 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------------CCceEEEEcCcccC---CC
Confidence 35779999999999999988864 789999998 56999998876532 24677777666443 22
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
+.++||+|++.+++++..+...+++.+.++|+|||.+++....+
T Consensus 329 ~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 329 PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 35689999999999999999999999999999999999876543
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=106.88 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=97.7
Q ss_pred cchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccC
Q 027594 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM 115 (221)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~ 115 (221)
++.+..+.+.+.+.. ...+++|||+|||+|..++.++.. +.+++++|. +.+++.+++|+..++.
T Consensus 70 ~~~~~~l~~~~l~~~--------~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----- 136 (251)
T TIGR03534 70 RPDTEELVEAALERL--------KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL----- 136 (251)
T ss_pred CCChHHHHHHHHHhc--------ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----
Confidence 455666666666542 124569999999999999999986 558999998 5699999999998764
Q ss_pred CCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC--------------------------HHHHHHHHHH
Q 027594 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIFA 169 (221)
Q Consensus 116 ~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~--------------------------~~~l~~~~~~ 169 (221)
+++.+...|+... ...++||+|++++++..... ...++..+.+
T Consensus 137 -------~~~~~~~~d~~~~----~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~ 205 (251)
T TIGR03534 137 -------DNVTFLQSDWFEP----LPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPR 205 (251)
T ss_pred -------CeEEEEECchhcc----CcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHH
Confidence 3577777666442 13568999999988664221 2367788889
Q ss_pred hcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEE
Q 027594 170 LSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 170 ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~ 204 (221)
+|+|||.+++....... +.+.+.++ .+|....
T Consensus 206 ~L~~gG~~~~~~~~~~~---~~~~~~l~~~gf~~v~ 238 (251)
T TIGR03534 206 LLKPGGWLLLEIGYDQG---EAVRALFEAAGFADVE 238 (251)
T ss_pred hcccCCEEEEEECccHH---HHHHHHHHhCCCCceE
Confidence 99999999886644332 23333333 4675433
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=108.78 Aligned_cols=106 Identities=16% Similarity=0.215 Sum_probs=82.2
Q ss_pred CeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
.+|||+|||+|.+++.++... ++|+++|+ +++++.+++|+..++. .+++.+...||.+.. ..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----------~~~v~~~~~d~~~~~----~~ 180 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----------EHRVEFIQSNLFEPL----AG 180 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhccC----cC
Confidence 689999999999999999864 58999998 5699999999998875 345888887775431 23
Q ss_pred CCccEEEEcccccCCc-------------------------CHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 143 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~-------------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
.+||+|++++|+.... ....++..+.++|+|||.+++.......
T Consensus 181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~q~ 249 (284)
T TIGR00536 181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQ 249 (284)
T ss_pred CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHH
Confidence 3799999998764322 2456778888899999998876654433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-14 Score=101.69 Aligned_cols=95 Identities=16% Similarity=0.240 Sum_probs=61.0
Q ss_pred EEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc-cCCC
Q 027594 69 IELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPP 144 (221)
Q Consensus 69 LelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~-~~~~ 144 (221)
||+|||+|..+..++.. +.+++++|+ +.|++.+++++..... .+.. ...+...+.... ..++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------------~~~~--~~~~~~~~~~~~~~~~~ 66 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------------DNFE--RLRFDVLDLFDYDPPES 66 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------------EE--EEE--SSS---CCC---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------------ccee--EEEeecCChhhcccccc
Confidence 79999999999999887 678999998 5599888887777542 1222 223333322211 1259
Q ss_pred ccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 145 fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
||+|+++.++++.++...+++.+.++|+|||.+
T Consensus 67 fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 67 FDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-13 Score=108.49 Aligned_cols=105 Identities=16% Similarity=0.253 Sum_probs=82.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~----ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++.+|||||||+|..++.+++. +++|+++|. ++|++.+++++..++. ..++++...+..+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~~--- 121 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDI--- 121 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhhC---
Confidence 5679999999999999888762 568999998 6699999999987654 34677777554332
Q ss_pred cccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 139 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
+ ...+|+|+++-++++.+ ....+++.+.+.|+|||.++++....
T Consensus 122 ~--~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~ 167 (247)
T PRK15451 122 A--IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS 167 (247)
T ss_pred C--CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 1 24699999988876643 35689999999999999999987543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.4e-13 Score=104.98 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=82.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||||||+|.+++.++..+ ++|+++|. +++++.+++|++.++. .++.+...|+.... ...
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------------~~v~~~~~D~~~~l--~~~ 118 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------------GNARVVNTNALSFL--AQP 118 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEEchHHHHH--hhc
Confidence 56799999999999999765554 57999997 6699999999999875 46788877664322 112
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHh--cCCCeEEEEEEEec
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGYEIR 184 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~l--l~~~g~~~i~~~~r 184 (221)
..+||+|++++| |.....+.++..+... ++|++.+|+.+..+
T Consensus 119 ~~~fDlV~~DPP-y~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 119 GTPHNVVFVDPP-FRKGLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCCceEEEECCC-CCCChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 346999999888 6667778888888774 78999999876643
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-12 Score=113.33 Aligned_cols=143 Identities=13% Similarity=0.117 Sum_probs=101.1
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
+..+.+.+.+.+ ...++.+|||+|||+|.+++.+|+.+++|+++|. ++|++.+++|++.|+.
T Consensus 282 ~e~l~~~vl~~l-------~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~---------- 344 (443)
T PRK13168 282 NQKMVARALEWL-------DPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL---------- 344 (443)
T ss_pred HHHHHHHHHHHh-------cCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence 455666665542 2346689999999999999999999999999998 5699999999999875
Q ss_pred CCCceEEEEEEecCCCC-ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcC
Q 027594 121 LLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSN 199 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~-~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~ 199 (221)
+++++...|+.+... ......+||+|+++++.-. ....+..+.+ ++|++.+|++...... -+.+....+.+
T Consensus 345 --~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvSCnp~tl--aRDl~~L~~~g 416 (443)
T PRK13168 345 --DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVSCNPATL--ARDAGVLVEAG 416 (443)
T ss_pred --CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEEeChHHh--hccHHHHhhCC
Confidence 468888888754321 1122457999999877433 3455566666 5899999997744322 23433334678
Q ss_pred CeEEEecCCC
Q 027594 200 FNVKLVPKAK 209 (221)
Q Consensus 200 f~v~~v~~~~ 209 (221)
|+++.+.--+
T Consensus 417 Y~l~~i~~~D 426 (443)
T PRK13168 417 YRLKRAGMLD 426 (443)
T ss_pred cEEEEEEEec
Confidence 9988775544
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.8e-13 Score=103.90 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=79.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++++||||+||+|.+|+.++.+|+ +|+++|. +.+++.+++|++.|+. .+++++...|........
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----------~~~~~~~~~D~~~~l~~~ 115 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----------GEQAEVVRNSALRALKFL 115 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------cccEEEEehhHHHHHHHh
Confidence 45788999999999999999999998 6999998 5699999999999975 346777775553221101
Q ss_pred ccCCC-ccEEEEcccccCCcCHHHHHHHHHH--hcCCCeEEEEEEE
Q 027594 140 AVAPP-FDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~-fD~Vi~~d~~y~~~~~~~l~~~~~~--ll~~~g~~~i~~~ 182 (221)
....+ ||+|+ .||.|.......++..+.. +++++|.+++-+.
T Consensus 116 ~~~~~~~dvv~-~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~ 160 (189)
T TIGR00095 116 AKKPTFDNVIY-LDPPFFNGALQALLELCENNWILEDTVLIVVEED 160 (189)
T ss_pred hccCCCceEEE-ECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 11223 55555 5666777778888877755 5788887766544
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=106.16 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=91.9
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCC
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL 122 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 122 (221)
...+|+.... ...++++|||||||+|..+..+++.+++|+++|. +.++..+++++..++.
T Consensus 35 ~~~~~l~~~~-------~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------ 95 (233)
T PRK05134 35 LRLNYIREHA-------GGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL------------ 95 (233)
T ss_pred HHHHHHHHhc-------cCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC------------
Confidence 4456666552 3457889999999999999999999999999998 5688999988876542
Q ss_pred CceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 123 ~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++.+...++..... ....+||+|+++.++.+......+++.+.++|+|+|.++++...
T Consensus 96 -~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 96 -KIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred -ceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 35555544443321 12468999999999999888999999999999999999987643
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.8e-13 Score=108.60 Aligned_cols=106 Identities=23% Similarity=0.262 Sum_probs=75.9
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+++|++|||||||.|..+..++..||+ |+++|.. .+-.++-.+.+.-+. ....+....+.. +.++
T Consensus 112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~-~lf~~QF~~i~~~lg---------~~~~~~~lplgv---E~Lp 178 (315)
T PF08003_consen 112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPS-PLFYLQFEAIKHFLG---------QDPPVFELPLGV---EDLP 178 (315)
T ss_pred CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCC-hHHHHHHHHHHHHhC---------CCccEEEcCcch---hhcc
Confidence 4679999999999999999999999996 9999952 122222222222210 011233332222 2233
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. .+.||+|++..++||..+.-..+..++..|+|||.+++-
T Consensus 179 ~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 179 N-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred c-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEE
Confidence 3 578999999999999999999999999999999998863
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=106.55 Aligned_cols=125 Identities=14% Similarity=-0.022 Sum_probs=89.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEe-cCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw-~~~~~~~ 139 (221)
.+.+|||+|||+|..+..+++. +.+|+++|. +++++.+++|+..++. .++.+...|+ ..... .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~l~~-~ 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------------TNLRLLCGDAVEVLLD-M 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------------CCEEEEecCHHHHHHH-H
Confidence 5679999999999999999876 357999998 6699999999988764 4678888666 32211 1
Q ss_pred ccCCCccEEEEcccccCCc--------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEE
Q 027594 140 AVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK 203 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~--------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~ 203 (221)
....+||+|+++.+..+.. ....+++.+.++|+|||.++++.... .....+++.++ .++.++
T Consensus 107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~--~~~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE--GYAEYMLEVLSAEGGFLV 177 (202)
T ss_pred cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH--HHHHHHHHHHHhCccccc
Confidence 2356899999874322111 25789999999999999999876443 33455556554 466554
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=109.07 Aligned_cols=102 Identities=16% Similarity=0.222 Sum_probs=80.0
Q ss_pred CeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++|||+|||+|.+++.+++. +++|+++|+ +.+++.+++|++.++. .+++.+...|+.+. . ..
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~~--l--~~ 199 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIESDLFAA--L--PG 199 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCcEEEEECchhhh--C--CC
Confidence 68999999999999999976 468999998 5699999999999875 35688888776432 1 23
Q ss_pred CCccEEEEcccccCCc-------------------------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~-------------------------~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+||+|++++|+.... ....+++.+.++|+|||.+++-..
T Consensus 200 ~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g 264 (307)
T PRK11805 200 RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG 264 (307)
T ss_pred CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 5799999998854321 135678888889999999887543
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-12 Score=105.51 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=94.1
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
+.+..+.+++... ....++.+|||+|||+|.+++.++... .+|+++|. +.+++.+++|+. +..
T Consensus 91 ~~te~l~~~~~~~-------~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~------ 156 (275)
T PRK09328 91 PETEELVEWALEA-------LLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL------ 156 (275)
T ss_pred CCcHHHHHHHHHh-------ccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC------
Confidence 3455666666533 123456799999999999999999875 67999998 569999999998 222
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc--------------------------CHHHHHHHHHHh
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFAL 170 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~--------------------------~~~~l~~~~~~l 170 (221)
..++.+...|+.... ...+||+|++++++.... ....++..+.++
T Consensus 157 -----~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~ 227 (275)
T PRK09328 157 -----GARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY 227 (275)
T ss_pred -----CCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence 356888887774321 146899999998865321 135577777899
Q ss_pred cCCCeEEEEEEEecChhHHHHHHHHHh-cCCe
Q 027594 171 SGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN 201 (221)
Q Consensus 171 l~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~ 201 (221)
|+|||.+++....... +.+.+.++ .+|.
T Consensus 228 Lk~gG~l~~e~g~~~~---~~~~~~l~~~gf~ 256 (275)
T PRK09328 228 LKPGGWLLLEIGYDQG---EAVRALLAAAGFA 256 (275)
T ss_pred cccCCEEEEEECchHH---HHHHHHHHhCCCc
Confidence 9999999885543322 33334443 4664
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4e-12 Score=100.65 Aligned_cols=124 Identities=19% Similarity=0.256 Sum_probs=88.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...++.+|||+|||+|.+++.+++. +.+|+++|. +++++.+++|+..+++ .+++.+...|..+.
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----------~~~v~~~~~d~~~~- 104 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----------LNNIVLIKGEAPEI- 104 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCCeEEEEechhhh-
Confidence 3457889999999999999998864 357999998 6699999999998874 25677766554321
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV 202 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v 202 (221)
......+||.|+++. .......+++.+.++|+|||++++... ..+......+.++ .+|.+
T Consensus 105 -l~~~~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~ 165 (198)
T PRK00377 105 -LFTINEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNL 165 (198)
T ss_pred -HhhcCCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCe
Confidence 112236899999853 335678899999999999999876332 2223345555553 35544
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-12 Score=91.99 Aligned_cols=102 Identities=25% Similarity=0.306 Sum_probs=77.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++++|||+|||+|..+..+++. +.+|+++|. +.+++.+++|++.++. .++.+...+.... ..
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~~--~~ 83 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------------SNIVIVEGDAPEA--LE 83 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------------CceEEEecccccc--Ch
Confidence 35679999999999999999976 357999998 5599999999988764 3566655443221 11
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
....+||+|++... ......+++.+.++|+|||.+++..
T Consensus 84 ~~~~~~D~v~~~~~---~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 DSLPEPDRVFIGGS---GGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhcCCCCEEEECCc---chhHHHHHHHHHHHcCCCCEEEEEe
Confidence 12458999998653 2346789999999999999998754
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-12 Score=107.20 Aligned_cols=96 Identities=20% Similarity=0.195 Sum_probs=77.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||||||+|..+..+++. +.+|+++|. +.|++.++++ ++.+...|..+ ..
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d~~~---~~ 85 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------------GVDARTGDVRD---WK 85 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------------CCcEEEcChhh---CC
Confidence 46789999999999999999887 678999998 5588888652 13455544322 21
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..++||+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 86 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 86 -PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred -CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 24689999999999998889999999999999999998854
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-12 Score=105.90 Aligned_cols=98 Identities=16% Similarity=0.166 Sum_probs=77.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||||||+|..+..++.. +.+|+++|. +.+++.++++.. ++.+...|... ..
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~-----------------~~~~~~~d~~~---~~ 89 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP-----------------DCQFVEADIAS---WQ 89 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC-----------------CCeEEECchhc---cC
Confidence 46789999999999999999876 568999998 569998887531 24454433322 11
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
...+||+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 90 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 90 -PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred -CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence 24589999999999988889999999999999999988864
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-13 Score=112.31 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=86.5
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+.+++|.|||+|||||.+|+.+|+.||+ |+++|.+++.+.+++.+..|++ .+.|++......+.
T Consensus 56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~-----------~~ii~vi~gkvEdi--- 121 (346)
T KOG1499|consen 56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL-----------EDVITVIKGKVEDI--- 121 (346)
T ss_pred hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc-----------cceEEEeecceEEE---
Confidence 56889999999999999999999999995 9999999988999999999987 45678877444333
Q ss_pred cccCCCccEEEEccc---ccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 139 KAVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~---~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
..+.++.|+|++-.. ++.++.+..++-.=.+-|+|||.+|
T Consensus 122 ~LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 122 ELPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ecCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 333689999988654 4457788888888888899999766
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-12 Score=109.31 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=80.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||||||+|..++.+++. +.+|+++|. +++++.++++...+ ++.+...|..+ .+.
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~---------------~i~~i~gD~e~---lp~ 174 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK---------------ECKIIEGDAED---LPF 174 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc---------------CCeEEeccHHh---CCC
Confidence 5679999999999999988764 467999998 56999998875422 35566644432 333
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
..++||+|+++.++++..+...+++.+.++|+|||.+++...
T Consensus 175 ~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEe
Confidence 457899999999999888889999999999999999887654
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.6e-12 Score=102.95 Aligned_cols=114 Identities=14% Similarity=0.122 Sum_probs=82.2
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
.+..+...+.+.+ ...++.+|||+|||+|..+..+++... +|+++|. +++++.+++|++.++.
T Consensus 61 ~~p~~~~~~~~~l-------~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------ 127 (215)
T TIGR00080 61 SAPHMVAMMTELL-------ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------ 127 (215)
T ss_pred chHHHHHHHHHHh-------CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------
Confidence 3444445555442 344788999999999999999998743 4999997 6799999999998874
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+++++...|..... ....+||+|+++.... .+...+.+.|+|||++++...
T Consensus 128 ------~~v~~~~~d~~~~~---~~~~~fD~Ii~~~~~~------~~~~~~~~~L~~gG~lv~~~~ 178 (215)
T TIGR00080 128 ------DNVIVIVGDGTQGW---EPLAPYDRIYVTAAGP------KIPEALIDQLKEGGILVMPVG 178 (215)
T ss_pred ------CCeEEEECCcccCC---cccCCCCEEEEcCCcc------cccHHHHHhcCcCcEEEEEEc
Confidence 46777775543321 1246899999875432 334567788999999887543
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=113.94 Aligned_cols=106 Identities=21% Similarity=0.307 Sum_probs=80.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|.+++.+++. +++|+++|+ +.+++.+++|+..+++ .+++.+...||....
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----------~~~v~~~~~D~~~~~---- 202 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----------TDRIQIIHSNWFENI---- 202 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------ccceeeeecchhhhC----
Confidence 3468999999999999988864 568999998 5699999999998875 356888887764321
Q ss_pred cCCCccEEEEcccccCCc--------------------------CHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~--------------------------~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
...+||+|++|+|+...+ .+..++..+.++|+|||.+++.....
T Consensus 203 ~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~ 272 (506)
T PRK01544 203 EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFK 272 (506)
T ss_pred cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCc
Confidence 245899999998865321 13346677788999999998865433
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.8e-13 Score=103.79 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=85.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
.++||+|||.|.++..+|.++.+++++|. +.+++.+++.+.. .++|.+...+.-.. .+.++
T Consensus 45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--------------~~~V~~~~~dvp~~----~P~~~ 106 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--------------LPHVEWIQADVPEF----WPEGR 106 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---------------SSEEEEES-TTT-------SS-
T ss_pred ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--------------CCCeEEEECcCCCC----CCCCC
Confidence 48999999999999999999989999998 5599999987664 24688887555332 24689
Q ss_pred ccEEEEcccccCCcC---HHHHHHHHHHhcCCCeEEEEEEEecCh-------hHHHHHHHHHhcCC-eEEEe
Q 027594 145 FDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWKSNF-NVKLV 205 (221)
Q Consensus 145 fD~Vi~~d~~y~~~~---~~~l~~~~~~ll~~~g~~~i~~~~r~~-------~~~~~~~~~~~~~f-~v~~v 205 (221)
||+|+.+.++|+.+. +..+++.+...|+|||.+++++..... ..-+...+++.+.+ +|+.+
T Consensus 107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~~~~~~~~~~~~ 178 (201)
T PF05401_consen 107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEMLQEHLTEVERV 178 (201)
T ss_dssp EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHHHHHHhhheeEE
Confidence 999999999998654 556788888899999999998763211 11345556665543 45444
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.3e-12 Score=100.49 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=75.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+|||+|||+|..+..+++. +.+|+++|. +++++.+++|+..++. .+++++...|.....
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-----------~~~v~~~~~d~~~~~-- 137 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-----------WGVVEVYHGDGKRGL-- 137 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCcEEEEECCcccCC--
Confidence 46789999999999999888865 358999998 6699999999988764 245777775543221
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+||+|+++..+.+ +...+.+.|+|||++++...
T Consensus 138 -~~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~lvi~~~ 174 (205)
T PRK13944 138 -EKHAPFDAIIVTAAAST------IPSALVRQLKDGGVLVIPVE 174 (205)
T ss_pred -ccCCCccEEEEccCcch------hhHHHHHhcCcCcEEEEEEc
Confidence 12468999998866542 33567788999999887653
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.7e-12 Score=104.49 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=83.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~----ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++.+|||||||+|..+..+++. +++|+++|. ++|++.+++++..... ..++++...|+....
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-- 119 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHVE-- 119 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhCC--
Confidence 6679999999999999988864 568999998 6699999999876442 246777776664332
Q ss_pred cccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 139 KAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
...+|+|+++.++++.. ....+++.+.+.|+|||.++++...+.
T Consensus 120 ---~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 120 ---IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred ---CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 24689999988877643 467899999999999999999876543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.7e-12 Score=107.59 Aligned_cols=143 Identities=20% Similarity=0.126 Sum_probs=103.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-cc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~ 139 (221)
.+|++||++-|-||..|+.+|..|| +||.+|.+. +++.+++|++.|++. ..++.++..|.-.... ..
T Consensus 216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----------~~~~~~i~~Dvf~~l~~~~ 285 (393)
T COG1092 216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----------GDRHRFIVGDVFKWLRKAE 285 (393)
T ss_pred ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----------ccceeeehhhHHHHHHHHH
Confidence 3599999999999999999999999 799999865 999999999999972 2445565533211110 11
Q ss_pred ccCCCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-----hcCCeEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLV 205 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-----~~~f~v~~v 205 (221)
....+||+||..||-|-. .++..++..+.++|+|||.++++...+.-. .+.|.+++ ..+..+..+
T Consensus 286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-~~~f~~~i~~a~~~~~~~~~~~ 364 (393)
T COG1092 286 RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-SDLFLEIIARAAAAAGRRAQEI 364 (393)
T ss_pred hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-HHHHHHHHHHHHHhcCCcEEEe
Confidence 224599999999998852 356778899999999999999877665543 23333332 235677777
Q ss_pred cCCCCCcccCC
Q 027594 206 PKAKESTMWGN 216 (221)
Q Consensus 206 ~~~~~~~~~~~ 216 (221)
......+++..
T Consensus 365 ~~~~~~~D~p~ 375 (393)
T COG1092 365 EGEGQPPDHPR 375 (393)
T ss_pred eccCCCCCccc
Confidence 77777776643
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.1e-12 Score=101.09 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=81.2
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
++..+..++.... ...++.+|||+|||+|..+..+++. + .+|+++|. +++++.+++|++.++.
T Consensus 60 ~~p~~~~~~~~~l-------~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------ 126 (212)
T PRK13942 60 SAIHMVAIMCELL-------DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------ 126 (212)
T ss_pred CcHHHHHHHHHHc-------CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence 4555555665542 3447889999999999999988876 3 58999997 6699999999998764
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
+++++...|- ........+||+|++.... ..+...+.+.|+|||++++..
T Consensus 127 ------~~v~~~~gd~---~~~~~~~~~fD~I~~~~~~------~~~~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 127 ------DNVEVIVGDG---TLGYEENAPYDRIYVTAAG------PDIPKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ------CCeEEEECCc---ccCCCcCCCcCEEEECCCc------ccchHHHHHhhCCCcEEEEEE
Confidence 4677777443 2222235689999886433 233456677899999988754
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-11 Score=98.05 Aligned_cols=158 Identities=16% Similarity=0.105 Sum_probs=98.8
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccC---C
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---N 116 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---~ 116 (221)
....|.+++... ...++.+|||+|||.|.-++.+|.+|.+||++|+ +.+++.+.. .++...... .
T Consensus 19 p~~~l~~~~~~l--------~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~ 87 (213)
T TIGR03840 19 VNPLLVKHWPAL--------GLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGE 87 (213)
T ss_pred CCHHHHHHHHhh--------CCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceecccc
Confidence 456777777642 1125679999999999999999999999999998 458886532 222210000 0
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEE-EEecC-----hh-
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLG-YEIRS-----TS- 187 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~-~~~r~-----~~- 187 (221)
.......+|++...|..+... ....+||.|+-..++.+ .+..+..++.+.++|+|||.+++. ..... +.
T Consensus 88 ~~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~ 165 (213)
T TIGR03840 88 FTRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPF 165 (213)
T ss_pred ceeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCC
Confidence 000012457777755544321 11357999998766554 455677999999999999975543 32211 11
Q ss_pred -H-HHHHHHHHhcCCeEEEecCCCCC
Q 027594 188 -V-HEQMLQMWKSNFNVKLVPKAKES 211 (221)
Q Consensus 188 -~-~~~~~~~~~~~f~v~~v~~~~~~ 211 (221)
+ ...+.+.+...|+++.+......
T Consensus 166 ~~~~~eL~~~f~~~~~i~~~~~~~~~ 191 (213)
T TIGR03840 166 SVSPAEVEALYGGHYEIELLESRDVL 191 (213)
T ss_pred CCCHHHHHHHhcCCceEEEEeecccc
Confidence 1 24455555667888777665544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.40 E-value=8e-12 Score=106.38 Aligned_cols=120 Identities=17% Similarity=0.125 Sum_probs=89.7
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCC
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL 121 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~ 121 (221)
..++..+.... ...++.+|||+|||||.+.+.++..+++++++|. +.|++.++.|++.++.
T Consensus 168 ~~la~~~~~l~-------~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~----------- 229 (329)
T TIGR01177 168 PKLARAMVNLA-------RVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGI----------- 229 (329)
T ss_pred HHHHHHHHHHh-------CCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCC-----------
Confidence 34566655431 2346789999999999999999999999999998 5699999999998775
Q ss_pred CCceEEEEEEecCCCCccccCCCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 122 ~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
.++.+...|..+ .+....+||+|++++|+-.. .....++..+.+.|+|||.+++..+..
T Consensus 230 -~~i~~~~~D~~~---l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 230 -EDFFVKRGDATK---LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred -CCCeEEecchhc---CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 235666644433 33335689999998775321 225788999999999999988877654
|
This family is found exclusively in the Archaea. |
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.1e-12 Score=101.75 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=85.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||+|||+|..+..++..+ .+++++|. +.+++.+++++..++. ..++.+...|+.+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~--- 116 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----------SGNVEFVQGDAEALP--- 116 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----------ccCeEEEecccccCC---
Confidence 56899999999999999998776 67999998 5699999998876543 245777776654432
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+||+|+++.++++......+++.+.++|+|||.+++...
T Consensus 117 ~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~ 159 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF 159 (239)
T ss_pred CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence 2356899999998888888999999999999999999887654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=99.88 Aligned_cols=105 Identities=19% Similarity=0.131 Sum_probs=82.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...++.+|||+|||+|..+..++... .+|+++|. +.+++.++++.... ..++.+...|....
T Consensus 16 ~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~- 81 (241)
T PRK08317 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------------GPNVEFVRGDADGL- 81 (241)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------------CCceEEEecccccC-
Confidence 34467899999999999999888653 57999998 56888888873321 24567766554332
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
+....+||+|+++.++.+..+...+++.+.++|+|||.+++..
T Consensus 82 --~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 82 --PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred --CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence 2335789999999999988889999999999999999998765
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.5e-11 Score=95.47 Aligned_cols=130 Identities=17% Similarity=0.127 Sum_probs=83.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.+|||+|||+|..++.+++.. .+|+++|. ++|++.+.++++.. .++.+...|-......
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------------~nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------------KNIIPILADARKPERY 135 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------------CCcEEEECCCCCcchh
Confidence 4477899999999999999999763 47999998 56998887776542 2455555443321101
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh-------hHHHHHHHHHh-cCCeEEEecC
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWK-SNFNVKLVPK 207 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~-------~~~~~~~~~~~-~~f~v~~v~~ 207 (221)
.....+||+|++.-. .+.....++..+.++|+|||.++++.+.|.- ...+...+.++ .+|++.....
T Consensus 136 ~~l~~~~D~i~~d~~--~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~ 210 (226)
T PRK04266 136 AHVVEKVDVIYQDVA--QPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD 210 (226)
T ss_pred hhccccCCEEEECCC--ChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence 112356999986411 1222345688999999999999995433221 11223334443 4898866544
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.5e-12 Score=118.30 Aligned_cols=159 Identities=18% Similarity=0.150 Sum_probs=102.5
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhcccc---
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQ--- 114 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~--- 114 (221)
.+..|.+.+.... ...+++++|||||||+|.+++.+++.. ++|+++|+ +++++.+++|++.|++....
T Consensus 101 eTE~lve~L~~~~------~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~ 174 (1082)
T PLN02672 101 WSFTFYEGLNRHP------DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV 174 (1082)
T ss_pred hHHHHHHHHHhcc------cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence 3556777754321 123467899999999999999999764 57999998 66999999999998642000
Q ss_pred -CCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC----------------------------------
Q 027594 115 -MNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------------------- 159 (221)
Q Consensus 115 -~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~---------------------------------- 159 (221)
........+++++...||.... .....+||+|++|+|+-...+
T Consensus 175 ~~~~~~~l~~rV~f~~sDl~~~~--~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d 252 (1082)
T PLN02672 175 YDGEGKTLLDRVEFYESDLLGYC--RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF 252 (1082)
T ss_pred cccccccccccEEEEECchhhhc--cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence 0000011246888888886542 111236999999998532110
Q ss_pred ----HHHHHHHHHHhcCCCeEEEEEEEecChhHHH-HHHHHHhcCCeEEEecCCC
Q 027594 160 ----LEPLLQTIFALSGPKTTILLGYEIRSTSVHE-QMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 160 ----~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~-~~~~~~~~~f~v~~v~~~~ 209 (221)
+..++....++|+|||.+++-...+..+... .+++. .+|+...+-..+
T Consensus 253 GL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~--~gf~~~~~~~~~ 305 (1082)
T PLN02672 253 GLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFER--RGFRITKLWQTK 305 (1082)
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHH--CCCCeeEEeeeh
Confidence 2556777788899999998877665554333 23332 467665444433
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=106.92 Aligned_cols=99 Identities=18% Similarity=0.199 Sum_probs=78.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||||||+|..++.+++. |++|+++|. +++++.++++++ +. .+++...|+...
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-------------~v~~~~~D~~~l---- 225 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-------------PVEIRLQDYRDL---- 225 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-------------eEEEEECchhhc----
Confidence 447789999999999999988864 889999998 569999998774 21 255555454321
Q ss_pred ccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.++||.|++..++.+. ...+.+++.+.++|+|||.+++..
T Consensus 226 --~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 226 --NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred --CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 4689999999888774 346789999999999999998854
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.5e-12 Score=100.96 Aligned_cols=127 Identities=20% Similarity=0.222 Sum_probs=94.4
Q ss_pred cchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCC
Q 027594 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
|........|+....... .....+.+|||+|||+|..+..+++.+++++++|. +.+++.+++++..++.
T Consensus 23 ~~~~~~~~~~i~~~~~~~---~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------- 92 (224)
T TIGR01983 23 HKMNPLRLDYIRDTIRKN---KKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL------- 92 (224)
T ss_pred HHhhHHHHHHHHHHHHhc---ccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-------
Confidence 334445556766554211 11245789999999999999999988889999998 5699999998887653
Q ss_pred CCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.++.+...+...... ....+||+|+++.++++......+++.+.++|+|+|.++++..
T Consensus 93 -----~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 93 -----LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred -----CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 245655544432221 1136899999999999999999999999999999999888654
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-12 Score=92.41 Aligned_cols=92 Identities=25% Similarity=0.325 Sum_probs=70.8
Q ss_pred EEEeCCCccHHHHHHHHhC-----CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 68 VIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 68 vLelGcG~G~~~l~~a~~g-----a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
|||||||+|.....+++.. .+++++|+ +++++.++++....+. ++++...|..+ ++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-------------~~~~~~~D~~~---l~~~ 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-------------KVRFVQADARD---LPFS 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-------------TSEEEESCTTC---HHHH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-------------ceEEEECCHhH---Cccc
Confidence 7999999999999998764 68999998 5699999998876442 57777755533 4445
Q ss_pred CCCccEEEEccc-ccC--CcCHHHHHHHHHHhcCCCe
Q 027594 142 APPFDYIIGTDV-VYA--EHLLEPLLQTIFALSGPKT 175 (221)
Q Consensus 142 ~~~fD~Vi~~d~-~y~--~~~~~~l~~~~~~ll~~~g 175 (221)
.++||+|+++.. +.+ .+....+++.+.++++|||
T Consensus 65 ~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 679999999544 443 4578999999999999987
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.2e-11 Score=104.30 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=84.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||+|||+|..++.+++.. .+++++|.+.+++.+++|++..+. .+++++...|..+..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~~---- 212 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES---- 212 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCCC----
Confidence 356799999999999999999875 579999998899999999998775 467888886543321
Q ss_pred cCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+.+|+|+.+.++|+.. ....+++.+.+.|+|||++++...
T Consensus 213 -~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 213 -YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred -CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 13479999998888654 346799999999999999999865
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-12 Score=99.67 Aligned_cols=126 Identities=12% Similarity=0.008 Sum_probs=88.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
...++||||||+|..++.+|+.. +.|+++|. +++++.+++++..+++ .++.+...|..+......
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------------~ni~~i~~d~~~~~~~~~ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------------KNLHVLCGDANELLDKFF 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------------CCEEEEccCHHHHHHhhC
Confidence 45699999999999999999874 47999998 5699999999988765 478888866643221112
Q ss_pred cCCCccEEEEcccccCCc--------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc--CCeEE
Q 027594 141 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS--NFNVK 203 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~--------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~--~f~v~ 203 (221)
....+|.|+.+-+.-+.. ..+.+++.+.++|+|||.+++..... ...+.+.+.+.+ .|+..
T Consensus 84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~--~~~~~~~~~~~~~~~f~~~ 154 (194)
T TIGR00091 84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE--PLFEDMLKVLSENDLFENT 154 (194)
T ss_pred CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH--HHHHHHHHHHHhCCCeEec
Confidence 245899998874322211 12679999999999999998866443 233455555544 25543
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=105.90 Aligned_cols=125 Identities=11% Similarity=0.086 Sum_probs=91.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
.+.+|||||||+|.+++.+|..+.+|+++|. +++++.+++|++.|+. +++++...|..+... ...
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~------------~~~~~~~~d~~~~~~--~~~ 298 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL------------DNLSFAALDSAKFAT--AQM 298 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHHH--hcC
Confidence 5679999999999999999998889999998 6699999999999875 467887766543221 112
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecCCC
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
.+||+|+.++| |. .....++..+.+ ++|++.+|++...... -+.+. .+ .+|+++.+.--+
T Consensus 299 ~~~D~vi~DPP-r~-G~~~~~l~~l~~-~~p~~ivyvsc~p~Tl--aRDl~-~L-~gy~l~~~~~~D 358 (374)
T TIGR02085 299 SAPELVLVNPP-RR-GIGKELCDYLSQ-MAPKFILYSSCNAQTM--AKDIA-EL-SGYQIERVQLFD 358 (374)
T ss_pred CCCCEEEECCC-CC-CCcHHHHHHHHh-cCCCeEEEEEeCHHHH--HHHHH-Hh-cCceEEEEEEec
Confidence 46999999888 43 455667777754 6899999987643222 23332 33 678887775544
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.8e-12 Score=101.17 Aligned_cols=101 Identities=21% Similarity=0.302 Sum_probs=78.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++++|||+|||+|..+..++..+.+|+++|. ++++..+++++..++. ..++.+...|+...
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~----- 116 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV-----------AGNVEFEVNDLLSL----- 116 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChhhC-----
Confidence 346789999999999999999998999999998 5699999998877653 24577777555332
Q ss_pred cCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEE
Q 027594 141 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.++||+|++++++++. .....+++.+.+++++++.+.+
T Consensus 117 -~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 117 -CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred -CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2689999999998763 3466778888888876655443
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.7e-11 Score=106.74 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=90.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-cccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~~ 141 (221)
++.+|||+|||+|..++.+|+.+.+|+++|. +++++.+++|+..|+. .++++...|+.+... ....
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~------------~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI------------ANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC------------CceEEEeCCHHHHHHHHHhc
Confidence 4579999999999999999998889999998 6699999999999875 578888866643211 1112
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-hcCCeEEEecCCC
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAK 209 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~~ 209 (221)
..+||+|+.+++-. .....+++.+.+ ++|++.+|++... .+...-++.+ +.+|+++.+.--+
T Consensus 360 ~~~~D~vi~dPPr~--G~~~~~l~~l~~-l~~~~ivyvsc~p---~tlard~~~l~~~gy~~~~~~~~D 422 (431)
T TIGR00479 360 GQIPDVLLLDPPRK--GCAAEVLRTIIE-LKPERIVYVSCNP---ATLARDLEFLCKEGYGITWVQPVD 422 (431)
T ss_pred CCCCCEEEECcCCC--CCCHHHHHHHHh-cCCCEEEEEcCCH---HHHHHHHHHHHHCCeeEEEEEEec
Confidence 35799999877732 334666666665 7888888886542 2232223333 5578887765544
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.7e-12 Score=100.73 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=79.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++++|||||||+|..+..+++.+. +++++|. ++++..++.+.. +++.+...|.... +
T Consensus 33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~---~ 93 (240)
T TIGR02072 33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKL---P 93 (240)
T ss_pred CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhC---C
Confidence 3457999999999999999998764 5899998 557777765433 2355666554432 2
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
...++||+|+++.++++..+...++..+.++|+|||.++++..
T Consensus 94 ~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 94 LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 3457899999999999988899999999999999999988653
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-11 Score=102.26 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=89.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..++.+|+.+++|+++|. +++++.+++|++.|++ +++++...|..+... ...
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l------------~~v~~~~~D~~~~~~--~~~ 238 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL------------TNVQFQALDSTQFAT--AQG 238 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEcCHHHHHH--hcC
Confidence 5679999999999999999999999999998 6699999999999875 468888766543221 123
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecCCC
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
.+||+|+.+++-. .....+++.+.+ ++|+..+|++....... +.+ +.+ .+|+++.+.--+
T Consensus 239 ~~~D~Vv~dPPr~--G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~--rd~-~~l-~~y~~~~~~~~D 298 (315)
T PRK03522 239 EVPDLVLVNPPRR--GIGKELCDYLSQ-MAPRFILYSSCNAQTMA--KDL-AHL-PGYRIERVQLFD 298 (315)
T ss_pred CCCeEEEECCCCC--CccHHHHHHHHH-cCCCeEEEEECCcccch--hHH-hhc-cCcEEEEEEEec
Confidence 4799999988822 334455555544 57888888866543322 333 333 578887765444
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.7e-11 Score=91.14 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=91.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..+|.+++|+|||||.+++.++..+. +|+++|. +++++.+++|+++.+. +++.++.. +....
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------------~n~~vv~g---~Ap~~ 96 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------------DNLEVVEG---DAPEA 96 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------------CcEEEEec---cchHh
Confidence 45788999999999999999996654 7999997 6699999999999885 68888773 33322
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCC-eEEEecCC
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNF-NVKLVPKA 208 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f-~v~~v~~~ 208 (221)
......||.|+.... ..++.+++++...|+|||++++-... - +.....++.++ .++ ++.++.-.
T Consensus 97 L~~~~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~nait-l-E~~~~a~~~~~~~g~~ei~~v~is 162 (187)
T COG2242 97 LPDLPSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAIT-L-ETLAKALEALEQLGGREIVQVQIS 162 (187)
T ss_pred hcCCCCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEeec-H-HHHHHHHHHHHHcCCceEEEEEee
Confidence 112237999988754 66889999999999999998774432 1 22233444443 466 66555433
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-11 Score=97.02 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=82.4
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (221)
++..+..++...+ ...++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++|+..++.
T Consensus 62 ~~p~~~~~l~~~l-------~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~--------- 125 (212)
T PRK00312 62 SQPYMVARMTELL-------ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL--------- 125 (212)
T ss_pred CcHHHHHHHHHhc-------CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC---------
Confidence 3445555555442 3446789999999999999988888779999997 6699999999988764
Q ss_pred CCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 120 ~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.++.+...|.... . ....+||+|++.... ..+...+.+.|+|||.+++...
T Consensus 126 ---~~v~~~~~d~~~~--~-~~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 126 ---HNVSVRHGDGWKG--W-PAYAPFDRILVTAAA------PEIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ---CceEEEECCcccC--C-CcCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEEEEEc
Confidence 3577766543221 1 124689999987543 2345667889999999888665
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.3e-12 Score=100.82 Aligned_cols=88 Identities=16% Similarity=0.204 Sum_probs=70.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||||||||..+..+++. +.+|+++|. ++|++.++.+. .....+ ...++..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------------~~~~~d---~~~lp~~ 107 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------------DKVVGS---FEALPFR 107 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------------ceEEec---hhhCCCC
Confidence 3679999999999999999887 679999998 56999887531 112222 2334455
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCC
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK 174 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~ 174 (221)
+++||+|+++..+++..+.+.+++++.++|+|.
T Consensus 108 d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~ 140 (226)
T PRK05785 108 DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ 140 (226)
T ss_pred CCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence 789999999999999999999999999999994
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-11 Score=102.59 Aligned_cols=122 Identities=24% Similarity=0.182 Sum_probs=85.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+|++||++-|-||..|+.+++.|| +|+.+|.+. +++.+++|++.|++. .+++++...|.-+.......
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----------~~~~~~~~~Dvf~~l~~~~~ 192 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----------LDRHRFIQGDVFKFLKRLKK 192 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----------CTCEEEEES-HHHHHHHHHH
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHHHHHHhc
Confidence 689999999999999999999998 599999855 999999999999972 25677777554332111112
Q ss_pred CCCccEEEEcccccCC------cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH
Q 027594 142 APPFDYIIGTDVVYAE------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW 196 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~ 196 (221)
..+||+||+.||-|-. .++..|+..+.++++|||.++++.....-. .+.|++.+
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~ 252 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAV 252 (286)
T ss_dssp TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHH
Confidence 4689999999998753 246678888899999999988776654432 23445544
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.1e-11 Score=92.97 Aligned_cols=129 Identities=18% Similarity=0.223 Sum_probs=87.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.++. .++++...|..+. ..
T Consensus 39 ~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------------~~v~~~~~d~~~~--~~ 104 (196)
T PRK07402 39 EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------------KNVEVIEGSAPEC--LA 104 (196)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CCeEEEECchHHH--Hh
Confidence 36789999999999999999865 468999998 6799999999998764 4577766444221 11
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh-HHHHHHHHHh-cCCeEEEecCCC
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS-VHEQMLQMWK-SNFNVKLVPKAK 209 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~-~~~~~~~~~~-~~f~v~~v~~~~ 209 (221)
.....+|.++.. .......++..+.++|+|||.+++........ .....++..+ .++++.++...+
T Consensus 105 ~~~~~~d~v~~~----~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (196)
T PRK07402 105 QLAPAPDRVCIE----GGRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVNR 172 (196)
T ss_pred hCCCCCCEEEEE----CCcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhhh
Confidence 112345666542 12456889999999999999988876543221 1122333333 367777765544
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=8e-11 Score=94.49 Aligned_cols=156 Identities=17% Similarity=0.112 Sum_probs=97.0
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCC--
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG-- 118 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~-- 118 (221)
...|.+|+... ...++.+|||+|||.|..++.+|.+|.+|+++|+ +.+++.+.. ++++.......+
T Consensus 23 ~~~L~~~~~~~--------~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~ 91 (218)
T PRK13255 23 NPLLQKYWPAL--------ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEF 91 (218)
T ss_pred CHHHHHHHHhh--------CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccc
Confidence 55677777532 1225679999999999999999999999999998 558887632 333211000000
Q ss_pred -CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEecC------hh--
Q 027594 119 -SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRS------TS-- 187 (221)
Q Consensus 119 -~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~r~------~~-- 187 (221)
.....+|++...|.-.... .....||.|+-..++.+ .+.....++.+.++|+|||++++...... +.
T Consensus 92 ~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~ 169 (218)
T PRK13255 92 EHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFS 169 (218)
T ss_pred cccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCC
Confidence 0013456666655443321 12357999998776554 45678899999999999997544222111 10
Q ss_pred -HHHHHHHHHhcCCeEEEecCCCC
Q 027594 188 -VHEQMLQMWKSNFNVKLVPKAKE 210 (221)
Q Consensus 188 -~~~~~~~~~~~~f~v~~v~~~~~ 210 (221)
..+.+.+.+...|+++.+.....
T Consensus 170 ~~~~el~~~~~~~~~i~~~~~~~~ 193 (218)
T PRK13255 170 VSDEEVEALYAGCFEIELLERQDV 193 (218)
T ss_pred CCHHHHHHHhcCCceEEEeeeccc
Confidence 13445555555688877765543
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.6e-11 Score=95.19 Aligned_cols=112 Identities=15% Similarity=0.151 Sum_probs=89.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh--------CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEE
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL--------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD 131 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~--------ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~d 131 (221)
....+.+|||++||||-+++.+.+. +.+|+..|+ ++|+...++...+-.+. ...++.++.
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---------~~~~~~w~~-- 165 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---------ASSRVEWVE-- 165 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---------cCCceEEEe--
Confidence 3446799999999999999988754 257999998 77999999888764441 123466666
Q ss_pred ecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 132 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 132 w~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
++.+.++.++..||....+--+.+..++...+++..++|||||++++..-..
T Consensus 166 -~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 166 -GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred -CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 4556677788999999999888999999999999999999999988655443
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-11 Score=100.71 Aligned_cols=104 Identities=17% Similarity=0.224 Sum_probs=72.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||||||+|.+++.+++.|.+|+++|+ +.|++.+++|+....... ....++.+...|+.. .
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~-------~~~~~~~f~~~Dl~~------l 209 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL-------PPEVLPKFEANDLES------L 209 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc-------ccccceEEEEcchhh------c
Confidence 46789999999999999999999999999998 559999999887642100 001345666555422 2
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.++||+|++.+++++... ...+++.+.++ .+++. ++..
T Consensus 210 ~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~l-iIs~ 249 (315)
T PLN02585 210 SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKRL-IISF 249 (315)
T ss_pred CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCEE-EEEe
Confidence 468999999999876432 44566666653 45444 4544
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=95.52 Aligned_cols=101 Identities=21% Similarity=0.283 Sum_probs=78.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...++.+|||||||+|..+..+|++..+|+.+|. ++..+.|++|++..+. .+|.+.. ++...-.
T Consensus 69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~------------~nV~v~~---gDG~~G~ 133 (209)
T COG2518 69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY------------ENVTVRH---GDGSKGW 133 (209)
T ss_pred CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC------------CceEEEE---CCcccCC
Confidence 4557899999999999999999999889999996 7799999999999885 4577776 4443322
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+||.|+..-. .+.+-..+.+.|++||++++-..
T Consensus 134 ~~~aPyD~I~Vtaa------a~~vP~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 134 PEEAPYDRIIVTAA------APEVPEALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCCCcCEEEEeec------cCCCCHHHHHhcccCCEEEEEEc
Confidence 34579999987633 33444566778999999887554
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=91.58 Aligned_cols=150 Identities=18% Similarity=0.227 Sum_probs=103.6
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
.+.+|.+.|.+...+- .....+-|||||||+|+++-.+++. + +.+.+||+ +++++..++.+..|+.
T Consensus 24 DTFlLlDaLekd~~eL----~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~------ 93 (209)
T KOG3191|consen 24 DTFLLLDALEKDAAEL----KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV------ 93 (209)
T ss_pred hhhHHHHHHHHHHHHH----hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC------
Confidence 4667777776543110 0012468999999999999998865 3 45889998 7799999999999875
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC---------------------cCHHHHHHHHHHhcCCCe
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------------------HLLEPLLQTIFALSGPKT 175 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~---------------------~~~~~l~~~~~~ll~~~g 175 (221)
++.++..|....- .+++.|+++.|+++--. +-...|+..+..+|+|.|
T Consensus 94 -------~~~~V~tdl~~~l----~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~G 162 (209)
T KOG3191|consen 94 -------HIDVVRTDLLSGL----RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRG 162 (209)
T ss_pred -------ccceeehhHHhhh----ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCc
Confidence 3455554433221 24789999999885421 125667888888999999
Q ss_pred EEEEEEEecChhHHHHHHHHH-hcCCeEEEecCCCCCcc
Q 027594 176 TILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKESTM 213 (221)
Q Consensus 176 ~~~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~~~~~~ 213 (221)
.+|+....++.. +...+.+ +++|.+.....++...+
T Consensus 163 v~Ylv~~~~N~p--~ei~k~l~~~g~~~~~~~~Rk~~~E 199 (209)
T KOG3191|consen 163 VFYLVALRANKP--KEILKILEKKGYGVRIAMQRKAGGE 199 (209)
T ss_pred eEEeeehhhcCH--HHHHHHHhhcccceeEEEEEecCCc
Confidence 999988777764 5555555 35787766665555443
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.6e-11 Score=103.63 Aligned_cols=107 Identities=18% Similarity=0.108 Sum_probs=79.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||+|||+|..++.++++ ..+|+++|. +++++.+++|++.++. .++.+...|......
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~~-- 315 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------------TNIETKALDARKVHE-- 315 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCCcccccc--
Confidence 5789999999999999998875 358999998 5699999999998875 347777766544321
Q ss_pred ccCCCccEEEEcccccCCc---------------C-------HHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 140 AVAPPFDYIIGTDVVYAEH---------------L-------LEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~---------------~-------~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
...++||+|++..+.+... . ...++..+.++|+|||.++.+...-
T Consensus 316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 382 (444)
T PRK14902 316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI 382 (444)
T ss_pred hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence 1126899999876643211 1 2357888889999999988765443
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-12 Score=99.43 Aligned_cols=110 Identities=25% Similarity=0.305 Sum_probs=78.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-cc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~ 139 (221)
.+|.+||||.||||.+|+.++.+|| +|+++|. ++++..+++|++..+. .+++.+...|...... ..
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----------~~~~~v~~~d~~~~l~~~~ 109 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----------EDKIRVIKGDAFKFLLKLA 109 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------------GGGEEEEESSHHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----------CcceeeeccCHHHHHHhhc
Confidence 5899999999999999999999998 5999998 6699999999998775 3456666644322111 11
Q ss_pred ccCCCccEEEEcccccCCcC-HHHHHHHHH--HhcCCCeEEEEEEEec
Q 027594 140 AVAPPFDYIIGTDVVYAEHL-LEPLLQTIF--ALSGPKTTILLGYEIR 184 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~-~~~l~~~~~--~ll~~~g~~~i~~~~r 184 (221)
....+||+|++.|| |.... ...++..+. .+|+++|.+++-+..+
T Consensus 110 ~~~~~fDiIflDPP-Y~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 110 KKGEKFDIIFLDPP-YAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HCTS-EEEEEE--S-TTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred ccCCCceEEEECCC-cccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 23679999998666 55554 588888887 5799999988866554
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.1e-11 Score=96.66 Aligned_cols=96 Identities=20% Similarity=0.282 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||+|||+|..+..+++.+.+|+++|. +.+++.++++....+. .+++.+...|+. ..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~------~~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL-----------AGNITFEVGDLE------SL 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccCcEEEEcCch------hc
Confidence 46789999999999999999999999999998 5699999998876553 245777765532 12
Q ss_pred CCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCe
Q 027594 142 APPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKT 175 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g 175 (221)
.++||+|++++++++ ......+++.+.+++++++
T Consensus 125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~ 160 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL 160 (230)
T ss_pred cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence 468999999999865 3345667777777654433
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-10 Score=94.52 Aligned_cols=133 Identities=13% Similarity=0.077 Sum_probs=84.5
Q ss_pred cccceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHH
Q 027594 33 HLGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 33 ~~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~ 107 (221)
..-.++|+--. .||..|..-+.. ....++.+|||||||+|..+..++.. + .+|+++|+ +.+++.+...+..
T Consensus 104 ~~eyR~w~p~rSKlaa~i~~g~~~----l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~ 179 (293)
T PTZ00146 104 KIEYRVWNPFRSKLAAAIIGGVAN----IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK 179 (293)
T ss_pred cceeeeeCCcccHHHHHHHCCcce----eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh
Confidence 34588997632 455455433211 13457889999999999999999976 3 36999997 4455444432221
Q ss_pred hhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 108 NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 108 n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
..+|.++..|.............||+|++.- ..++....++..+.++|+|+|.+++..+.+.
T Consensus 180 --------------r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dv--a~pdq~~il~~na~r~LKpGG~~vI~ika~~ 241 (293)
T PTZ00146 180 --------------RPNIVPIIEDARYPQKYRMLVPMVDVIFADV--AQPDQARIVALNAQYFLKNGGHFIISIKANC 241 (293)
T ss_pred --------------cCCCEEEECCccChhhhhcccCCCCEEEEeC--CCcchHHHHHHHHHHhccCCCEEEEEEeccc
Confidence 1245555544432211112235799998754 2455566777789999999999999766544
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-10 Score=93.21 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=81.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC---CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~- 138 (221)
.++.+|||||||||..+..+++.. .+|+++|+.++ +. ..++.+.+.|+.+....
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~------------~~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DP------------IVGVDFLQGDFRDELVLK 107 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cC------------CCCcEEEecCCCChHHHH
Confidence 467899999999999999888763 47999998552 11 12477888777654211
Q ss_pred ----cccCCCccEEEEcccccCCcC-----------HHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEE
Q 027594 139 ----KAVAPPFDYIIGTDVVYAEHL-----------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK 203 (221)
Q Consensus 139 ----~~~~~~fD~Vi~~d~~y~~~~-----------~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~ 203 (221)
.....+||+|+++...+.... ...++..+.++|+|||.+++..... . ....++..++..|.-.
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~-~-~~~~~l~~l~~~f~~v 185 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG-E-GFDEYLREIRSLFTKV 185 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC-c-CHHHHHHHHHhCceEE
Confidence 123568999999764443221 2568889999999999998865332 2 2456777777777554
Q ss_pred Ee
Q 027594 204 LV 205 (221)
Q Consensus 204 ~v 205 (221)
++
T Consensus 186 ~~ 187 (209)
T PRK11188 186 KV 187 (209)
T ss_pred EE
Confidence 44
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-11 Score=101.70 Aligned_cols=105 Identities=23% Similarity=0.334 Sum_probs=84.5
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.++.|||+|||+|++++.+|..||+ |++++.++|.+.+++-++.|++ .++|.++.. ..+++
T Consensus 173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~-----------~~rItVI~G---KiEdi 238 (517)
T KOG1500|consen 173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL-----------ADRITVIPG---KIEDI 238 (517)
T ss_pred ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc-----------cceEEEccC---ccccc
Confidence 46889999999999999999999999985 9999999999999999999977 578999884 44443
Q ss_pred cccCCCccEEEEccc---ccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~---~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. .+++.|+||+-+. ++++..++.-+-. ++.|+|.|.++-.
T Consensus 239 e-LPEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMfPT 281 (517)
T KOG1500|consen 239 E-LPEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMFPT 281 (517)
T ss_pred c-CchhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCcccCc
Confidence 3 3678999998775 4456666655443 3789999987743
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.3e-10 Score=93.00 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=81.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||+|||+|..+..+++.+. +++++|. +.+++.++++.. . ..++.+...+..+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~------------~~~i~~~~~d~~~~~--- 101 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--L------------PLNIEFIQADAEALP--- 101 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--c------------CCCceEEecchhcCC---
Confidence 678999999999999999887654 7999998 568888888765 1 235666665554322
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
...++||+|+++..+.+......+++.+.++|+|||.+++...
T Consensus 102 ~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence 2346899999998888888899999999999999999988664
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.7e-10 Score=99.39 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=87.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-ccc---
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--- 140 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~--- 140 (221)
.+||||+||+|.+|+.+++...+|+++|. +.+++.+++|+..|++ +++++...|..+... ...
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~------------~~v~~~~~d~~~~l~~~~~~~~ 275 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI------------DNVQIIRMSAEEFTQAMNGVRE 275 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHhhccc
Confidence 57999999999999999988778999998 5699999999999985 467887766544211 000
Q ss_pred ---------cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecCCC
Q 027594 141 ---------VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 141 ---------~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
...+||+|+..+| + ....+.+++.+.+ |++.+|++.... ..-+.+. .+.++|+++.+.--+
T Consensus 276 ~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC~p~--tlarDl~-~L~~gY~l~~v~~~D 345 (362)
T PRK05031 276 FNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISCNPE--TLCENLE-TLSQTHKVERFALFD 345 (362)
T ss_pred ccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEeCHH--HHHHHHH-HHcCCcEEEEEEEcc
Confidence 0125899999887 4 3455666666654 788888876542 2223333 333489888775544
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3e-11 Score=109.07 Aligned_cols=106 Identities=19% Similarity=0.210 Sum_probs=78.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||+|||+|..+..+++. +.+|+++|++ .|++.++++...++ .++.+...|..+... .
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------------~~ie~I~gDa~dLp~-~ 482 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------------RSWNVIKGDAINLSS-S 482 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------------CCeEEEEcchHhCcc-c
Confidence 35789999999999998888764 5689999985 59999998876543 245555544332211 1
Q ss_pred ccCCCccEEEEcccccCC-------------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~-------------~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
..+++||+|+++.++++. .....+++.+.++|+|||.+++...
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 235789999999877632 3567889999999999999999764
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-10 Score=99.32 Aligned_cols=124 Identities=11% Similarity=0.040 Sum_probs=86.4
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-----
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK----- 139 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~----- 139 (221)
.+|||||||+|.+|+.+++...+|+++|. +++++.+++|+..|++ +++++...|..+.....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~------------~~v~~~~~d~~~~~~~~~~~~~ 266 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI------------DNVQIIRMSAEEFTQAMNGVRE 266 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEEcCHHHHHHHHhhccc
Confidence 47999999999999999988778999997 6699999999999985 46788776654422100
Q ss_pred c---c-----CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecCCC
Q 027594 140 A---V-----APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 140 ~---~-----~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
. . ...||+|+..+| .....+.+++.+.+ |++.+|++...... .+.+. .+.++|+++.+.--+
T Consensus 267 ~~~~~~~~~~~~~~d~v~lDPP--R~G~~~~~l~~l~~---~~~ivYvsC~p~tl--aRDl~-~L~~~Y~l~~v~~~D 336 (353)
T TIGR02143 267 FRRLKGIDLKSYNCSTIFVDPP--RAGLDPDTCKLVQA---YERILYISCNPETL--KANLE-QLSETHRVERFALFD 336 (353)
T ss_pred cccccccccccCCCCEEEECCC--CCCCcHHHHHHHHc---CCcEEEEEcCHHHH--HHHHH-HHhcCcEEEEEEEcc
Confidence 0 0 124899999887 34556666666654 78899887654322 23333 333458887765444
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.8e-10 Score=93.07 Aligned_cols=136 Identities=15% Similarity=0.169 Sum_probs=93.0
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEecchh-hHHHHHHHHHHhhhccccCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
+..+.+++....+. ...+++..+||+|||+|.+++.++.. + ..|+++|.++ ++.++.+|++++.+
T Consensus 130 TEE~V~~Vid~~~~----~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l-------- 197 (328)
T KOG2904|consen 130 TEEWVEAVIDALNN----SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL-------- 197 (328)
T ss_pred HHHHHHHHHHHHhh----hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh--------
Confidence 34445555443321 23445668999999999999998753 3 4699999855 99999999999987
Q ss_pred CCCCCceEEEEE----EecCCCCccccCCCccEEEEcccccCCcC--------------------------HHHHHHHHH
Q 027594 119 SDLLGSIQAVEL----DWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------------LEPLLQTIF 168 (221)
Q Consensus 119 ~~~~~~v~~~~~----dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~--------------------------~~~l~~~~~ 168 (221)
.+.+.+.+. +|..... ....++|++++|+++-..++ +..+..-..
T Consensus 198 ---~g~i~v~~~~me~d~~~~~~--l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~ 272 (328)
T KOG2904|consen 198 ---SGRIEVIHNIMESDASDEHP--LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLAT 272 (328)
T ss_pred ---cCceEEEecccccccccccc--cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhH
Confidence 567777644 4444332 34689999999998653322 333555567
Q ss_pred HhcCCCeEEEEEEEe--cChhHHHHHHH
Q 027594 169 ALSGPKTTILLGYEI--RSTSVHEQMLQ 194 (221)
Q Consensus 169 ~ll~~~g~~~i~~~~--r~~~~~~~~~~ 194 (221)
++|+|||.+++.... +++...+.+..
T Consensus 273 R~Lq~gg~~~le~~~~~~~~~lv~~~m~ 300 (328)
T KOG2904|consen 273 RMLQPGGFEQLELVERKEHSYLVRIWMI 300 (328)
T ss_pred hhcccCCeEEEEecccccCcHHHHHHHH
Confidence 789999999998874 33433444443
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.6e-11 Score=93.74 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=68.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||+|||+|..+..+++. +.+++++|+ +++++.++++.. ++.+...+..+ +
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------------~~~~~~~d~~~----~ 100 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------------NINIIQGSLFD----P 100 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------------CCcEEEeeccC----C
Confidence 35678999999999999999876 578999998 569999987532 23444544332 2
Q ss_pred ccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
...++||+|+++.++++.+ ....+++.+.+++ ++.++++.
T Consensus 101 ~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e 142 (204)
T TIGR03587 101 FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE 142 (204)
T ss_pred CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence 3467899999999998753 4566666666665 34555544
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-11 Score=105.86 Aligned_cols=102 Identities=22% Similarity=0.188 Sum_probs=78.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++++|||||||+|..+..+++.+.+|+++|. +++++.+++ .+.. .+++.+...|..... .+.+.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~-----------~~~i~~~~~d~~~~~-~~~~~ 101 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGH-----------YKNVKFMCADVTSPD-LNISD 101 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhcc-----------CCceEEEEecccccc-cCCCC
Confidence 5679999999999999999999889999998 558765443 2221 246777776664321 22345
Q ss_pred CCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEE
Q 027594 143 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~ 180 (221)
++||+|+++.++++... ...+++.+.++|+|||.+++.
T Consensus 102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 78999999999887544 678999999999999998875
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=88.03 Aligned_cols=148 Identities=22% Similarity=0.308 Sum_probs=98.7
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecchh-hHHHHHHHHHHhhhccccCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~ 116 (221)
++...+.+|+..++...+. .....+|||||||.|.+-..+++.|. +.+++|+++ ++++|+.-++.+++
T Consensus 46 ~ae~riv~wl~d~~~~~rv---~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~------ 116 (227)
T KOG1271|consen 46 DAEERIVDWLKDLIVISRV---SKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF------ 116 (227)
T ss_pred cHHHHHHHHHHhhhhhhhh---cccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC------
Confidence 3456778888877531111 11223999999999999999998875 489999955 99997776677765
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEccccc----C----CcCHHHHHHHHHHhcCCCeEEEEEEEecChhH
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY----A----EHLLEPLLQTIFALSGPKTTILLGYEIRSTSV 188 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y----~----~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~ 188 (221)
.+.|++.++|...+.. ...+||+|+--..+= + ..-+.--+..+.++|+|+|+++|...+...
T Consensus 117 -----~n~I~f~q~DI~~~~~---~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~-- 186 (227)
T KOG1271|consen 117 -----SNEIRFQQLDITDPDF---LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTK-- 186 (227)
T ss_pred -----CcceeEEEeeccCCcc---cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccH--
Confidence 4559999998877632 356777775322211 0 111234567788999999999998776554
Q ss_pred HHHHHHHHhc-CCeE-EEecC
Q 027594 189 HEQMLQMWKS-NFNV-KLVPK 207 (221)
Q Consensus 189 ~~~~~~~~~~-~f~v-~~v~~ 207 (221)
+.+.+.+.. +|.+ .+|+.
T Consensus 187 -dELv~~f~~~~f~~~~tvp~ 206 (227)
T KOG1271|consen 187 -DELVEEFENFNFEYLSTVPT 206 (227)
T ss_pred -HHHHHHHhcCCeEEEEeecc
Confidence 455555543 5765 44443
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-10 Score=99.82 Aligned_cols=110 Identities=19% Similarity=0.120 Sum_probs=79.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+|.+|||+|||+|..++.++.+ ..+|+++|. +.+++.+++|++.++. .++.+...|.......
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------------KSIKILAADSRNLLEL 318 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CeEEEEeCChhhcccc
Confidence 36789999999999999988875 247999998 5699999999999875 4577776554332211
Q ss_pred -cccCCCccEEEEccccc------CCcC----------------HHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 139 -KAVAPPFDYIIGTDVVY------AEHL----------------LEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 139 -~~~~~~fD~Vi~~d~~y------~~~~----------------~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
....++||.|++..+.. ...+ ...++..+.++|+|||+++.+...-
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 01246899999865422 1111 3577888899999999987765443
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.2e-11 Score=95.79 Aligned_cols=102 Identities=15% Similarity=0.110 Sum_probs=77.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
+.++|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.+++ .+++++...|..+... +
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----------~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----------DHKINFIQSDALSALDQL 136 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEccHHHHHHHH
Confidence 6789999999999988877753 358999998 6699999999999987 4678888866644311 1
Q ss_pred c--ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~--~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
. ....+||+|+... .......++..+.++++|||.+++
T Consensus 137 ~~~~~~~~fD~VfiDa---~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 137 LNNDPKPEFDFAFVDA---DKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HhCCCCCCCCEEEECC---CHHHHHHHHHHHHHhcCCCeEEEE
Confidence 0 1146899998752 234566788888999999999776
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.9e-11 Score=92.28 Aligned_cols=105 Identities=14% Similarity=0.108 Sum_probs=81.5
Q ss_pred eEEEeCCCccHHHHHH-HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceE-EEEEEecCCCCcc-ccC
Q 027594 67 RVIELGAGCGVAGFGM-ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ-AVELDWGNEDHIK-AVA 142 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~-a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~-~~~~dw~~~~~~~-~~~ 142 (221)
.|||+|||||..=-.. -..+.+||++|. +.|-+.+.+.++++.. .++. ++. ...+.++ ..+
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~------------~~~~~fvv---a~ge~l~~l~d 143 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP------------LQVERFVV---ADGENLPQLAD 143 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC------------cceEEEEe---echhcCccccc
Confidence 5799999999532222 345788999997 5599999999998853 3444 444 3333333 357
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
.++|.|++.-++....+....++.+.++|+|||++++..+.+..
T Consensus 144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~ 187 (252)
T KOG4300|consen 144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE 187 (252)
T ss_pred CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 89999999999999999999999999999999999987776654
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.2e-11 Score=81.25 Aligned_cols=100 Identities=22% Similarity=0.270 Sum_probs=77.8
Q ss_pred eEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 67 RVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
+++|+|||+|..+..++. .+.+++++|. ++++..++++...+. ..++.+...++.+... ....+
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~ 66 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------------ADNVEVLKGDAEELPP--EADES 66 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------------ccceEEEEcChhhhcc--ccCCc
Confidence 589999999999998887 4568999998 457777775433332 2456777766655432 13568
Q ss_pred ccEEEEcccccC-CcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 145 FDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 145 fD~Vi~~d~~y~-~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
||+|+++.+++. ......+++.+.+.++|+|.+++.
T Consensus 67 ~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 67 FDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred eEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 999999999888 888999999999999999998875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=101.45 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=77.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+|.+|||+|||+|..++.++..+ .+|+++|. +.+++.+++|++.++. .+++...|.......
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------------~~~~~~~D~~~~~~~- 308 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------------KATVIVGDARDPAQW- 308 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CeEEEEcCcccchhh-
Confidence 367899999999999999998764 48999998 5699999999998874 245555444322111
Q ss_pred ccCCCccEEEEcccccCC---------------c-------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAE---------------H-------LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~---------------~-------~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+||.|+++.+.... . ....++..+.++|+|||.++++..
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 124579999987764321 1 123678888999999999887764
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-10 Score=93.96 Aligned_cols=108 Identities=17% Similarity=0.173 Sum_probs=79.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
+|.+|||+|||+|..++.++.+ ...|+++|. +.+++.+++|++.++. .++.+...|.... .
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~---~ 135 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------------LNVAVTNFDGRVF---G 135 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEecCCHHHh---h
Confidence 6789999999999999988764 247999998 5699999999999875 4567766554322 1
Q ss_pred ccCCCccEEEEcccccCCc----------------------CHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 140 AVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~----------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
....+||.|+...+..... ....+++...++|+|||+++.+...-..
T Consensus 136 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~ 204 (264)
T TIGR00446 136 AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP 204 (264)
T ss_pred hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence 1235699999876644221 1245888888899999998876654443
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.4e-10 Score=93.89 Aligned_cols=102 Identities=19% Similarity=0.205 Sum_probs=72.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~----g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
++.+|||||||+|..+..+++. | .+|+++|. ++|++.++++...++ +.+...+-..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~---------------~~~~~~~~~~-- 122 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG---------------VTFRQAVSDE-- 122 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC---------------CeEEEEeccc--
Confidence 5679999999999998888752 3 48999998 669999988765432 2333322222
Q ss_pred CccccCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
....+++||+|+++.++++..+ ...+++.+.++++ |.+++....|.
T Consensus 123 -l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 123 -LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred -ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 2223578999999999998655 4578899988887 55555554444
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=95.28 Aligned_cols=104 Identities=12% Similarity=0.021 Sum_probs=80.4
Q ss_pred CCCeEEEeCCCcc-HHHHHHHH-h--CCEEEEecc-hhhHHHHHHHHHH-hhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 64 KGKRVIELGAGCG-VAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 64 ~~~~vLelGcG~G-~~~l~~a~-~--ga~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++|+|||||.| +.++.+++ + +.+++++|. +++++.+++++.. .++ .+++++...|..+..
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----------~~rV~F~~~Da~~~~- 190 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----------SKRMFFHTADVMDVT- 190 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----------cCCcEEEECchhhcc-
Confidence 6789999999965 55666653 3 457999998 6699999999865 443 467899887665431
Q ss_pred ccccCCCccEEEEcccccC-CcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~-~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
....+||+|++.-++|+ ......+++.+.+.|+|||.+++..
T Consensus 191 --~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 191 --ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred --cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 12468999999955555 4789999999999999999998865
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.3e-10 Score=93.23 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=66.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-----CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-----ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+.+|||+|||+|.+++.+++. ..+|+++|+ +.+++.+++|... +.+...|.....
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~-----------------~~~~~~D~~~~~- 110 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPE-----------------ATWINADALTTE- 110 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccC-----------------CEEEEcchhccc-
Confidence 3679999999999999998864 347999998 5599999987532 344444432211
Q ss_pred ccccCCCccEEEEcccccCCc------------CHHHHHHHHHHhcCCCeE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEH------------LLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~------------~~~~l~~~~~~ll~~~g~ 176 (221)
...+||+||+|+|++... ....++....+++++|+.
T Consensus 111 ---~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 111 ---FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred ---ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 245899999999988321 245578888886777665
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-10 Score=98.19 Aligned_cols=84 Identities=18% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHh-hhccccCCCCCCCCCceEEEEE-EecCCC-C
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVEL-DWGNED-H 137 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~~-dw~~~~-~ 137 (221)
++.+|||||||+|.+...++.. +.+++++|+ +.+++.|++|++.| ++ .++|.+... +-.... .
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----------~~~I~~~~~~~~~~i~~~ 182 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----------NGAIRLRLQKDSKAIFKG 182 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------cCcEEEEEccchhhhhhc
Confidence 4679999999999777666543 678999998 56999999999999 66 356666431 111111 0
Q ss_pred ccccCCCccEEEEcccccCCc
Q 027594 138 IKAVAPPFDYIIGTDVVYAEH 158 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~ 158 (221)
.......||+|++|+|+|...
T Consensus 183 i~~~~~~fDlivcNPPf~~s~ 203 (321)
T PRK11727 183 IIHKNERFDATLCNPPFHASA 203 (321)
T ss_pred ccccCCceEEEEeCCCCcCcc
Confidence 111356899999999988643
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-10 Score=100.14 Aligned_cols=110 Identities=17% Similarity=0.132 Sum_probs=81.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+|.+|||+|||+|..++.++.+ +.+|+++|. +.+++.+++|++..++ .++.+...|......
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------------~~v~~~~~Da~~l~~- 302 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------------SSIEIKIADAERLTE- 302 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhhhhh-
Confidence 36789999999999999988865 468999998 5699999999998775 357777766543321
Q ss_pred cccCCCccEEEEcccccCCc----------------------CHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 139 KAVAPPFDYIIGTDVVYAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~----------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
...++||.|++..+..... ....++..+.++|+|||.++.+...-..
T Consensus 303 -~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~ 371 (431)
T PRK14903 303 -YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK 371 (431)
T ss_pred -hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence 1246799999865553211 1255688888999999998887665443
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-10 Score=88.88 Aligned_cols=110 Identities=23% Similarity=0.318 Sum_probs=78.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++|.+||||-+|+|.+|+.++.+||. ++++|. ..++..+++|++.-+. ..+..+...|-.......
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----------~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----------EGEARVLRNDALRALKQL 109 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----------ccceEEEeecHHHHHHhc
Confidence 478999999999999999999999985 999998 5699999999988764 345566554433111111
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHH----HhcCCCeEEEEEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIF----ALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~----~ll~~~g~~~i~~~~ 183 (221)
...++||+|+..|| |.....+.....+. ..|+|++.+++-+..
T Consensus 110 ~~~~~FDlVflDPP-y~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 110 GTREPFDLVFLDPP-YAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred CCCCcccEEEeCCC-CccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 11235999998655 66665544444443 459999998885544
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=8e-11 Score=97.23 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=77.5
Q ss_pred CCCeEEEeCCCccH----HHHHHHHh-------CCEEEEecc-hhhHHHHHHHHHHh----hhcc----ccCCCCC----
Q 027594 64 KGKRVIELGAGCGV----AGFGMALL-------GCNVITTDQ-IEVLPLLKRNVEWN----TSRI----SQMNPGS---- 119 (221)
Q Consensus 64 ~~~~vLelGcG~G~----~~l~~a~~-------ga~v~~~D~-~~~l~~~~~n~~~n----~~~~----~~~~~~~---- 119 (221)
++.+|+|+|||||- +++.++.. +.+|+++|+ +.|++.|++++-.. +++. ..+....
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999995 45555543 347999998 55999999865211 1100 0000000
Q ss_pred ---CCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 120 ---DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 120 ---~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
....+|.+...|..+. +.+.++||+|++..++.+. +....+++.+.++|+|||.+++....
T Consensus 179 v~~~ir~~V~F~~~dl~~~---~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 179 VKPELKERVRFAKHNLLAE---SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSE 244 (264)
T ss_pred EChHHhCcCEEeeccCCCC---CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECcc
Confidence 0123567776555433 2235789999999887664 35668999999999999999986643
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=93.76 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=72.2
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+.+|||+|||+|.+++.++.. +.+|+++|+ +.+++.+++|.. ++.+...|.... . .
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------------~v~~v~~D~~e~---~-~ 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------------EAEWITSDVFEF---E-S 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------------CCEEEECchhhh---c-c
Confidence 458999999999999988775 468999998 569999887631 244555433222 1 2
Q ss_pred CCCccEEEEcccccCCcC--------------------HHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 142 APPFDYIIGTDVVYAEHL--------------------LEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--------------------~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
..+||+|++++++++... +.+++.....+|+|+|.+++++..+
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR 186 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence 458999999999886211 3566677788899999988887553
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.8e-10 Score=94.77 Aligned_cols=99 Identities=22% Similarity=0.196 Sum_probs=72.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.+++.. .+|+++|. +++++.+++|++.++. +++.+...|....
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------------~nV~~i~gD~~~~-- 143 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------------ENVIFVCGDGYYG-- 143 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCChhhc--
Confidence 3467899999999999999998754 25999997 6699999999998774 4577666443221
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.....+||+|+++.. ...+...+.+.|+|||++++..
T Consensus 144 -~~~~~~fD~Ii~~~g------~~~ip~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 144 -VPEFAPYDVIFVTVG------VDEVPETWFTQLKEGGRVIVPI 180 (322)
T ss_pred -ccccCCccEEEECCc------hHHhHHHHHHhcCCCCEEEEEe
Confidence 112357999998632 2233455677899999987754
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.5e-11 Score=94.92 Aligned_cols=129 Identities=19% Similarity=0.242 Sum_probs=88.6
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
=+++||||||||+.|..+-.+-.+.+++|+++ |++.+.+.=--..+.. .+-+. +.. ....+
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~---------Aea~~-----Fl~----~~~~e 187 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYV---------AEAVL-----FLE----DLTQE 187 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHH---------HHHHH-----Hhh----hccCC
Confidence 36899999999999999999999999999965 8887764321111100 00010 111 02357
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe-------------cChhHHHHHHHHHh-cCCeEEEecCCC
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI-------------RSTSVHEQMLQMWK-SNFNVKLVPKAK 209 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~-------------r~~~~~~~~~~~~~-~~f~v~~v~~~~ 209 (221)
+||+|.+.|++-....++.++.....+|+|||.+.++... |...........+. .+|++..+....
T Consensus 188 r~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt 267 (287)
T COG4976 188 RFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT 267 (287)
T ss_pred cccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence 8999999999999999999999999999999998886542 11111122234443 588887776655
Q ss_pred CC
Q 027594 210 ES 211 (221)
Q Consensus 210 ~~ 211 (221)
..
T Consensus 268 iR 269 (287)
T COG4976 268 IR 269 (287)
T ss_pred ch
Confidence 44
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-10 Score=97.52 Aligned_cols=107 Identities=16% Similarity=0.080 Sum_probs=82.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+..+||||||+|...+.+|+.. ..++++|+ +.++..+.+++..+++ +++.+...|...... ..
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------------~NV~~i~~DA~~ll~-~~ 188 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------------KNLLIINYDARLLLE-LL 188 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHhhh-hC
Confidence 45699999999999999999874 46999997 5699999999988875 578888866543221 23
Q ss_pred cCCCccEEEEcccccCCc------CHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~------~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.++++|.|+.+-+..+.. ..+.++..+.++|+|||.+.+....
T Consensus 189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 467899999874443322 1268999999999999999886643
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-10 Score=94.11 Aligned_cols=122 Identities=12% Similarity=0.174 Sum_probs=85.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.++|||||||+|.++..+++. +.+|+++|+ +++++.+++++..+.. .+++++...|..+. +..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----------~~rv~v~~~Da~~~--l~~ 132 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----------GERFEVIEADGAEY--IAV 132 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----------CCceEEEECCHHHH--HHh
Confidence 4578999999999999988765 467999998 6799999988765431 35677777554322 112
Q ss_pred cCCCccEEEEcccccCCc------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCe
Q 027594 141 VAPPFDYIIGTDVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~ 201 (221)
...+||+|+.. . |... ....+++.+.++|+|||++++....+.. ....+++.+++.|.
T Consensus 133 ~~~~yD~I~~D-~-~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~ 196 (262)
T PRK04457 133 HRHSTDVILVD-G-FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE 196 (262)
T ss_pred CCCCCCEEEEe-C-CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence 24689999974 3 3221 2368999999999999998885443433 24555666666663
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7e-11 Score=86.87 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=66.5
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
-.+++|++++|||||+|.+++.++..+.+ |++.|+ +++++..++|++..-+ ++.+.+.+..+...
T Consensus 44 ygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-------------qidlLqcdildle~ 110 (185)
T KOG3420|consen 44 YGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-------------QIDLLQCDILDLEL 110 (185)
T ss_pred hccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-------------hhheeeeeccchhc
Confidence 46789999999999999999999988886 999998 7799999999998754 45666766655443
Q ss_pred ccccCCCccEEEEcccccC
Q 027594 138 IKAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~ 156 (221)
. ...||.++.++++--
T Consensus 111 ~---~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 111 K---GGIFDTAVINPPFGT 126 (185)
T ss_pred c---CCeEeeEEecCCCCc
Confidence 2 478999999998754
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.6e-09 Score=95.88 Aligned_cols=123 Identities=18% Similarity=0.104 Sum_probs=86.3
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhcc
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (221)
.+++.+..++..+.. ..+|.+|||+|||+|..++.++.+ +.+|+++|. +.+++.+++|++.+++
T Consensus 233 ~vqd~~s~l~~~~l~----------~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-- 300 (445)
T PRK14904 233 SVQNPTQALACLLLN----------PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-- 300 (445)
T ss_pred EEeCHHHHHHHHhcC----------CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--
Confidence 566655555544432 346789999999999999888764 358999998 5699999999998875
Q ss_pred ccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC------C---------c-------CHHHHHHHHHHh
Q 027594 113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA------E---------H-------LLEPLLQTIFAL 170 (221)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~------~---------~-------~~~~l~~~~~~l 170 (221)
.++.+...|..... ...+||.|+...+.-. . . ....++..+.++
T Consensus 301 ----------~~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 366 (445)
T PRK14904 301 ----------TIIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL 366 (445)
T ss_pred ----------CeEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 45777775554321 2457999997533211 0 1 123578888999
Q ss_pred cCCCeEEEEEEEecC
Q 027594 171 SGPKTTILLGYEIRS 185 (221)
Q Consensus 171 l~~~g~~~i~~~~r~ 185 (221)
|+|||+++++...-.
T Consensus 367 lkpgG~lvystcs~~ 381 (445)
T PRK14904 367 LKPGGVLVYATCSIE 381 (445)
T ss_pred cCCCcEEEEEeCCCC
Confidence 999999988765443
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.1e-10 Score=94.74 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=75.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||||||+|..+..+++. +.+|+++|+ ++|++.+++++..... .-++..+..|..+.....
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----------~~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----------QLEVHGICADFTQPLALP 131 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----------CceEEEEEEcccchhhhh
Confidence 5679999999999999988866 578999998 5599999998775431 124555665554322111
Q ss_pred cc--CCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 AV--APPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~--~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.. .....++++..++++ .+....+++.+.+.|+|||.+++....
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 11 112334454456665 445778999999999999999886543
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=90.96 Aligned_cols=114 Identities=22% Similarity=0.263 Sum_probs=77.0
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
+++.+...+.+.+ ...+|.+|||||||+|..+..++.+ |. +|+.+|. ++.++.+++|++..+.
T Consensus 56 s~P~~~a~~l~~L-------~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------ 122 (209)
T PF01135_consen 56 SAPSMVARMLEAL-------DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------ 122 (209)
T ss_dssp --HHHHHHHHHHT-------TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------
T ss_pred hHHHHHHHHHHHH-------hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------
Confidence 3444444555443 4568899999999999999999986 43 5999997 6799999999999875
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+|.+...|-.. ......+||.|+.+-... .+-..+.+.|++||++++...
T Consensus 123 ------~nv~~~~gdg~~---g~~~~apfD~I~v~~a~~------~ip~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 123 ------DNVEVVVGDGSE---GWPEEAPFDRIIVTAAVP------EIPEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp ------HSEEEEES-GGG---TTGGG-SEEEEEESSBBS------S--HHHHHTEEEEEEEEEEES
T ss_pred ------CceeEEEcchhh---ccccCCCcCEEEEeeccc------hHHHHHHHhcCCCcEEEEEEc
Confidence 478887754222 112356899999875543 223456677899999887554
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.4e-09 Score=95.80 Aligned_cols=120 Identities=15% Similarity=0.064 Sum_probs=80.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+|.+|||+|||+|..++.++.. + ++|+++|. +++++.+++|++.++. ...+.....|...... ..
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~-----------~~~v~~~~~d~~~~~~-~~ 305 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL-----------TIKAETKDGDGRGPSQ-WA 305 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------CeEEEEeccccccccc-cc
Confidence 6789999999999999998875 3 68999998 5699999999998875 1122223322211111 01
Q ss_pred cCCCccEEEEccc------ccCCcC----------------HHHHHHHHHHhcCCCeEEEEEEEecC----hhHHHHHHH
Q 027594 141 VAPPFDYIIGTDV------VYAEHL----------------LEPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQ 194 (221)
Q Consensus 141 ~~~~fD~Vi~~d~------~y~~~~----------------~~~l~~~~~~ll~~~g~~~i~~~~r~----~~~~~~~~~ 194 (221)
...+||.|++..+ +...+. ...++..+.++|+|||.++++...-. ..+.+.|++
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~ 385 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQ 385 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHH
Confidence 2467999997543 222111 35688888999999999888765432 333445554
Q ss_pred H
Q 027594 195 M 195 (221)
Q Consensus 195 ~ 195 (221)
.
T Consensus 386 ~ 386 (426)
T TIGR00563 386 E 386 (426)
T ss_pred h
Confidence 3
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-11 Score=100.49 Aligned_cols=149 Identities=22% Similarity=0.276 Sum_probs=98.5
Q ss_pred CCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHH-HHHH
Q 027594 29 PNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLL-KRNV 105 (221)
Q Consensus 29 ~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~-~~n~ 105 (221)
|+....|.++|.++..|..++.+.. .+ .-.+.+|+|||||||+|++++.+...| .++.+.|+ .+.++.. -.|+
T Consensus 85 p~vyEGg~k~wecS~dl~~~l~~e~-~~---~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~ 160 (282)
T KOG2920|consen 85 PGVYEGGLKLWECSVDLLPYLKEEI-GA---QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNI 160 (282)
T ss_pred CceeecceEEeecHHHHHHHHHHHh-hh---heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccce
Confidence 4456789999999999999998663 11 234689999999999999999999998 56999997 4455222 1222
Q ss_pred HHhhhccccCCCCCCCCCceEEEEE---EecCCCCccccCCCccEEEEcccccCCcCHHHH-HHHHHHhcCCCeEEEEEE
Q 027594 106 EWNTSRISQMNPGSDLLGSIQAVEL---DWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPL-LQTIFALSGPKTTILLGY 181 (221)
Q Consensus 106 ~~n~~~~~~~~~~~~~~~~v~~~~~---dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l-~~~~~~ll~~~g~~~i~~ 181 (221)
..|.....+.+ +...-..+..- ||..... ..-.||+|+++..+|.....+.+ ......+++++|++|++.
T Consensus 161 ~~~~~~~~~~~---e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 161 LVNSHAGVEEK---ENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred ecchhhhhhhh---hcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence 22221100000 00001111122 5521110 01389999999999999998888 667777889999999988
Q ss_pred EecChh
Q 027594 182 EIRSTS 187 (221)
Q Consensus 182 ~~r~~~ 187 (221)
+..+..
T Consensus 235 K~~yFg 240 (282)
T KOG2920|consen 235 KKLYFG 240 (282)
T ss_pred HhhccC
Confidence 765543
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.3e-10 Score=84.89 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=66.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||||||+|.++..+++.+.+|+++|. +.+++.+++|+... +++++...|..+.. ..
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~--------------~~v~ii~~D~~~~~---~~ 74 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA--------------DNLTVIHGDALKFD---LP 74 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC--------------CCEEEEECchhcCC---cc
Confidence 35679999999999999999988889999998 55999999887531 35777776554432 22
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHH-h-cCCCeEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFA-L-SGPKTTILL 179 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~-l-l~~~g~~~i 179 (221)
..+||.|+++.+++.. .+++..+.+ . +.++|.+++
T Consensus 75 ~~~~d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 75 KLQPYKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred ccCCCEEEECCCcccH---HHHHHHHHhcCCCcceEEEEE
Confidence 3469999998775432 233333333 2 235555544
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.5e-10 Score=91.52 Aligned_cols=93 Identities=12% Similarity=0.087 Sum_probs=66.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-----CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-----ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+.+|||+|||+|..+..+++. +.+|+++|+ +++++.++++. .++.+...|.. .
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~---~ 144 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSH---R 144 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeecc---c
Confidence 4468999999999999888764 236899998 55888886541 23555554433 2
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++..+++||+|++.. .+ ..++.+.++|+|||.++++.+.
T Consensus 145 lp~~~~sfD~I~~~~---~~----~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 145 LPFADQSLDAIIRIY---AP----CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CCCcCCceeEEEEec---CC----CCHHHHHhhccCCCEEEEEeCC
Confidence 334467899999753 22 3457889999999999887653
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-09 Score=83.39 Aligned_cols=121 Identities=17% Similarity=0.148 Sum_probs=76.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...++.+|||+|||+|..+..+++.. .+|+++|.+++. . ..++.+...|..+...
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~------------~~~i~~~~~d~~~~~~ 86 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P------------IENVDFIRGDFTDEEV 86 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c------------CCCceEEEeeCCChhH
Confidence 44578899999999999998887653 369999985422 1 1235666666544321
Q ss_pred c-----cccCCCccEEEEccccc--C---Cc------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCe
Q 027594 138 I-----KAVAPPFDYIIGTDVVY--A---EH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 138 ~-----~~~~~~fD~Vi~~d~~y--~---~~------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~ 201 (221)
. .....+||+|+++.+.+ . .. ..+.++..+.++|+|||++++...... ....++..+++.|.
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~--~~~~~l~~l~~~~~ 164 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE--EIDEYLNELRKLFE 164 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc--cHHHHHHHHHhhhc
Confidence 0 12245799999864321 1 11 136788999999999999988543221 13455566555554
Q ss_pred EEEe
Q 027594 202 VKLV 205 (221)
Q Consensus 202 v~~v 205 (221)
-..+
T Consensus 165 ~~~~ 168 (188)
T TIGR00438 165 KVKV 168 (188)
T ss_pred eEEE
Confidence 3333
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.07 E-value=8e-09 Score=83.00 Aligned_cols=158 Identities=16% Similarity=0.122 Sum_probs=101.9
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhcc--ccCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRI--SQMNP 117 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~--~~~~~ 117 (221)
....|.+|+.+. ...++.+||..|||.|.-.+.+|.+|.+|+++|+++ +++.+.+ +|++.- .+.+.
T Consensus 28 pnp~L~~~~~~l--------~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~ 96 (226)
T PRK13256 28 PNEFLVKHFSKL--------NINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGND 96 (226)
T ss_pred CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH---HcCCCcceecccc
Confidence 366777777543 122567999999999999999999999999999854 8887754 222110 00000
Q ss_pred C-CCCCCceEEEEEEecCCCCccccCCCccEEEEccccc--CCcCHHHHHHHHHHhcCCCeEEEEEEEecC-----hh--
Q 027594 118 G-SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRS-----TS-- 187 (221)
Q Consensus 118 ~-~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y--~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~-----~~-- 187 (221)
. --....+++...|+-+.........+||+|+-.-++. .++.....++.+.++|+|||.+++..-... +.
T Consensus 97 ~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~ 176 (226)
T PRK13256 97 YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYS 176 (226)
T ss_pred cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCc
Confidence 0 0012467888766654432112236899987554443 467788899999999999998765443211 11
Q ss_pred -HHHHHHHHHhcCCeEEEecCCC
Q 027594 188 -VHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 188 -~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
..+.+...+...|+++.+....
T Consensus 177 v~~~e~~~lf~~~~~i~~l~~~~ 199 (226)
T PRK13256 177 VTQAELIKNFSAKIKFELIDSKQ 199 (226)
T ss_pred CCHHHHHHhccCCceEEEeeecc
Confidence 1345566667888888777543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.9e-10 Score=86.37 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+-.+|.|||||+|..+-.++++ ++.++++|. ++|++.+++.. .++++...|....
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----------------p~~~f~~aDl~~w---- 87 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----------------PDATFEEADLRTW---- 87 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----------------CCCceecccHhhc----
Confidence 34569999999999999999877 678999997 66998885421 3456655443332
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.+..++|++++|-++.+..++..++..+-..|.|||.+-+=.
T Consensus 88 ~p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 88 KPEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred CCCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEEC
Confidence 235789999999999999999999999999999999976633
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-09 Score=86.98 Aligned_cols=129 Identities=12% Similarity=0.202 Sum_probs=90.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
+.++|||||+|+|..++.+|.. +.+|+.+|. ++.++.+++|++.++. .++|++...+..+... +
T Consensus 118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----------~~~I~li~GdA~e~L~~l 186 (278)
T PLN02476 118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----------SHKVNVKHGLAAESLKSM 186 (278)
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence 5689999999999999999863 457999998 6699999999999987 4678887754433211 1
Q ss_pred --cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHhc--CCeE
Q 027594 139 --KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNV 202 (221)
Q Consensus 139 --~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------------~~~~~~~~~~~~--~f~v 202 (221)
.....+||+|+... ........+..+.++|+|||.+++-....+. ...+.|.+.+.. .|+.
T Consensus 187 ~~~~~~~~FD~VFIDa---~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~ 263 (278)
T PLN02476 187 IQNGEGSSYDFAFVDA---DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSI 263 (278)
T ss_pred HhcccCCCCCEEEECC---CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEE
Confidence 01135899999762 3566788889999999999998763221111 124666666643 4655
Q ss_pred EEec
Q 027594 203 KLVP 206 (221)
Q Consensus 203 ~~v~ 206 (221)
..++
T Consensus 264 ~llP 267 (278)
T PLN02476 264 SMVP 267 (278)
T ss_pred EEEE
Confidence 5554
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.7e-10 Score=87.83 Aligned_cols=102 Identities=18% Similarity=0.176 Sum_probs=79.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
+.++||||||++|.-++.+|.. +++|+.+|. ++..+.+++|++..++ .++|++...+..+... +
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----------~~~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----------DDRIEVIEGDALEVLPEL 113 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----------GGGEEEEES-HHHHHHHH
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----------CCcEEEEEeccHhhHHHH
Confidence 5679999999999999999964 678999997 6699999999999887 4688888855543211 1
Q ss_pred c--ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~--~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
. ...++||+|+.. .........+..+.++|+|||.+++
T Consensus 114 ~~~~~~~~fD~VFiD---a~K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 114 ANDGEEGQFDFVFID---ADKRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHTTTTTSEEEEEEE---STGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred HhccCCCceeEEEEc---ccccchhhHHHHHhhhccCCeEEEE
Confidence 1 113589999986 3566777888888899999999876
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=82.46 Aligned_cols=101 Identities=16% Similarity=0.057 Sum_probs=80.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHH-hCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMAL-LGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~-~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||.|.|+|.++.++|+ .|. +|+..|+ ++..+.|++|+...++ .++++....|..+..
T Consensus 91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----------~d~v~~~~~Dv~~~~ 159 (256)
T COG2519 91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----------GDRVTLKLGDVREGI 159 (256)
T ss_pred CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----------ccceEEEeccccccc
Confidence 567899999999999999999996 454 6999998 6799999999999876 455777775554433
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. ...||.|+.. ..+....+..+..+|+|||.+.+-.
T Consensus 160 ~----~~~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 160 D----EEDVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred c----ccccCEEEEc-----CCChHHHHHHHHHHhCCCcEEEEEc
Confidence 2 3489999863 3567788999999999999876633
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=93.43 Aligned_cols=98 Identities=18% Similarity=0.212 Sum_probs=74.0
Q ss_pred CCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~-ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+.+|||++||+|..|+.+|.. ++ +|+++|. +++++.+++|++.|++ +++.+...|..... ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------------~~~~v~~~Da~~~l--~~- 122 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------------ENEKVFNKDANALL--HE- 122 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CceEEEhhhHHHHH--hh-
Confidence 468999999999999999865 43 7999998 6699999999999986 34555554442211 11
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..+||+|+..+ | ....+++....+.++++|.++++.
T Consensus 123 ~~~fD~V~lDP--~--Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 123 ERKFDVVDIDP--F--GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred cCCCCEEEECC--C--CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 35799999854 2 445678888667789999999973
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.7e-09 Score=84.24 Aligned_cols=102 Identities=19% Similarity=0.167 Sum_probs=81.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEE-EEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~-~dw~~~~~~ 138 (221)
..++|||||++.|.-++.+|.. ..++|.+|. ++..+.|++|+++.+. .++|.... +|+.+....
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----------~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----------DDRIELLLGGDALDVLSR 127 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------cceEEEEecCcHHHHHHh
Confidence 6789999999999999999864 347999998 6799999999999887 45577766 355443221
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
...++||+|+.. ......+.++..+.++|+|||.+++-
T Consensus 128 -~~~~~fDliFID---adK~~yp~~le~~~~lLr~GGliv~D 165 (219)
T COG4122 128 -LLDGSFDLVFID---ADKADYPEYLERALPLLRPGGLIVAD 165 (219)
T ss_pred -ccCCCccEEEEe---CChhhCHHHHHHHHHHhCCCcEEEEe
Confidence 346899999986 55677889999999999999998763
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.6e-09 Score=91.52 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=101.2
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
+..|.++..+.+ ...++.+|||+-||.|.+|+.+|+...+|+++|+ +++++.|++|++.|+.
T Consensus 278 ~ekl~~~a~~~~-------~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i---------- 340 (432)
T COG2265 278 AEKLYETALEWL-------ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI---------- 340 (432)
T ss_pred HHHHHHHHHHHH-------hhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC----------
Confidence 445555665553 3346679999999999999999999999999997 7799999999999996
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-hcC
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSN 199 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-~~~ 199 (221)
.++++...+-.+..........+|.|+..+|=- ..-+.+++.+.+ ++|..++|++.-. .++.+-+..+ ..+
T Consensus 341 --~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~--G~~~~~lk~l~~-~~p~~IvYVSCNP---~TlaRDl~~L~~~g 412 (432)
T COG2265 341 --DNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRA--GADREVLKQLAK-LKPKRIVYVSCNP---ATLARDLAILASTG 412 (432)
T ss_pred --CcEEEEeCCHHHHhhhccccCCCCEEEECCCCC--CCCHHHHHHHHh-cCCCcEEEEeCCH---HHHHHHHHHHHhCC
Confidence 568888754433322211235789999876632 223456666655 5677788886643 3444444444 557
Q ss_pred CeEEEecCCCCCcccCCCC
Q 027594 200 FNVKLVPKAKESTMWGNPL 218 (221)
Q Consensus 200 f~v~~v~~~~~~~~~~~~~ 218 (221)
+.++++.--+ +|.+..
T Consensus 413 y~i~~v~~~D---mFP~T~ 428 (432)
T COG2265 413 YEIERVQPFD---MFPHTH 428 (432)
T ss_pred eEEEEEEEec---cCCCcc
Confidence 7777665444 555443
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.8e-09 Score=87.51 Aligned_cols=128 Identities=14% Similarity=0.026 Sum_probs=81.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.++||+||||+|..+..+++. + .+|+++|+ +++++.+++++....... ...+++++...|-.... ..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-------~~d~rv~v~~~Da~~~l--~~ 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-------YDDPRVELVIGDGIKFV--AE 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-------ccCCceEEEECchHHHH--hh
Confidence 4579999999999999988876 4 47999998 569999999876432100 01356777765433221 12
Q ss_pred cCCCccEEEEc--ccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHhcCC
Q 027594 141 VAPPFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF 200 (221)
Q Consensus 141 ~~~~fD~Vi~~--d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~--r~~~~~~~~~~~~~~~f 200 (221)
..++||+|++. ++..... .-..+++.+.+.|+|||.+++-... ..........+.+++.|
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F 212 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVF 212 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHC
Confidence 35689999984 2321111 1267788999999999997763221 12233444445555544
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=2e-09 Score=86.72 Aligned_cols=113 Identities=19% Similarity=0.117 Sum_probs=73.8
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHH-HHHHHHHhhhccc
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL-LKRNVEWNTSRIS 113 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~-~~~n~~~n~~~~~ 113 (221)
.+++++..|...+... ...+++++|||+|||||.++..+++.|+ +|+++|. +.++.. ++.+.+--...
T Consensus 55 ~vsr~~~kL~~~l~~~-------~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~-- 125 (228)
T TIGR00478 55 FVSRGGEKLKEALEEF-------NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLE-- 125 (228)
T ss_pred hhhhhHHHHHHHHHhc-------CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEee--
Confidence 5678899999888865 3457899999999999999999999987 5999998 445543 44332210000
Q ss_pred cCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 114 ~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
..+++ ..+|.+... .-..+|+++.| +..++..+.++|+| |.+++-
T Consensus 126 --------~~ni~--~~~~~~~~~---d~~~~DvsfiS--------~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 126 --------RTNIR--YVTPADIFP---DFATFDVSFIS--------LISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred --------cCCcc--cCCHhHcCC---CceeeeEEEee--------hHhHHHHHHHHhCc-CeEEEE
Confidence 11222 344544321 12367777766 33357788888888 665543
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-09 Score=84.65 Aligned_cols=96 Identities=21% Similarity=0.166 Sum_probs=70.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~--~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+|.+|||+.||.|..++.+|+ .++.|++.|. |++++.+++|++.|++ .+++.+...|..+...
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----------~~~i~~~~~D~~~~~~-- 166 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----------ENRIEVINGDAREFLP-- 166 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------------TTTEEEEES-GGG-----
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----------CCeEEEEcCCHHHhcC--
Confidence 4678999999999999999998 5667999998 7899999999999987 5678888866554432
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
...||-|+++.+- ....++..+..+++++|.+
T Consensus 167 --~~~~drvim~lp~----~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 167 --EGKFDRVIMNLPE----SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp --TT-EEEEEE--TS----SGGGGHHHHHHHEEEEEEE
T ss_pred --ccccCEEEECChH----HHHHHHHHHHHHhcCCcEE
Confidence 6789999997553 3345777788888888875
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-09 Score=81.84 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=69.2
Q ss_pred CCCeEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+|.+|||||||.|.+--.+.. ++.+.+++|+ ++.+..+. .++ +.+++.|....-. ..+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~rG---------------v~Viq~Dld~gL~-~f~ 72 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----ARG---------------VSVIQGDLDEGLA-DFP 72 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----HcC---------------CCEEECCHHHhHh-hCC
Confidence 678999999999977666654 6888999997 44443333 233 4667776655422 246
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
+.+||+||.+.++......+.++.++.++ |..++++.++
T Consensus 73 d~sFD~VIlsqtLQ~~~~P~~vL~EmlRV---gr~~IVsFPN 111 (193)
T PF07021_consen 73 DQSFDYVILSQTLQAVRRPDEVLEEMLRV---GRRAIVSFPN 111 (193)
T ss_pred CCCccEEehHhHHHhHhHHHHHHHHHHHh---cCeEEEEecC
Confidence 78999999999999888788887777655 4466666543
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-08 Score=85.10 Aligned_cols=162 Identities=16% Similarity=0.152 Sum_probs=94.7
Q ss_pred EcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hh
Q 027594 18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IE 96 (221)
Q Consensus 18 ~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~ 96 (221)
+.+..+++...++++.-. -+.....|.+++.+.+ ...++ ++|||-||+|.+|+.+|....+|+++|. ++
T Consensus 160 ~~~~~~~~~~~~~sFfQv--N~~~~~~l~~~~~~~l-------~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~ 229 (352)
T PF05958_consen 160 IQDKGLSFRISPGSFFQV--NPEQNEKLYEQALEWL-------DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEE 229 (352)
T ss_dssp ECCCTEEEEEETTS---S--BHHHHHHHHHHHHHHC-------TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HH
T ss_pred eeccceEEEECCCcCccC--cHHHHHHHHHHHHHHh-------hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHH
Confidence 344455666666543222 2234556666666553 22233 8999999999999999999999999997 67
Q ss_pred hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC----------c---cccCCCccEEEEcccccCCcCHHHH
Q 027594 97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH----------I---KAVAPPFDYIIGTDVVYAEHLLEPL 163 (221)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~----------~---~~~~~~fD~Vi~~d~~y~~~~~~~l 163 (221)
+++.|++|+..|++ +++++...+-.+... . ......+|+|+..||=-. .-+.+
T Consensus 230 av~~A~~Na~~N~i------------~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G--~~~~~ 295 (352)
T PF05958_consen 230 AVEDARENAKLNGI------------DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAG--LDEKV 295 (352)
T ss_dssp HHHHHHHHHHHTT--------------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT---SCHHH
T ss_pred HHHHHHHHHHHcCC------------CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCC--chHHH
Confidence 99999999999997 678887754433211 0 011236899998766332 22445
Q ss_pred HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecCCC
Q 027594 164 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 164 ~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~~~ 209 (221)
++.+.+ +.-.+|++.-...- .+.+ ..+.++|+++.+.--+
T Consensus 296 ~~~~~~---~~~ivYvSCnP~tl--aRDl-~~L~~~y~~~~v~~~D 335 (352)
T PF05958_consen 296 IELIKK---LKRIVYVSCNPATL--ARDL-KILKEGYKLEKVQPVD 335 (352)
T ss_dssp HHHHHH---SSEEEEEES-HHHH--HHHH-HHHHCCEEEEEEEEE-
T ss_pred HHHHhc---CCeEEEEECCHHHH--HHHH-HHHhhcCEEEEEEEee
Confidence 555543 35677776543221 2333 3445689887765444
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-08 Score=84.41 Aligned_cols=82 Identities=18% Similarity=0.200 Sum_probs=64.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...++.+|||||||+|.++..++..+.+|+++|+ +++++.+++++..++. .+++++...|+....
T Consensus 33 ~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-----------~~~v~ii~~Dal~~~--- 98 (294)
T PTZ00338 33 AIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-----------ASKLEVIEGDALKTE--- 98 (294)
T ss_pred CCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-----------CCcEEEEECCHhhhc---
Confidence 3446789999999999999999998889999998 5699999999887543 256888886654432
Q ss_pred ccCCCccEEEEcccccCCc
Q 027594 140 AVAPPFDYIIGTDVVYAEH 158 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~ 158 (221)
...||.|++|.+++-..
T Consensus 99 --~~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 99 --FPYFDVCVANVPYQISS 115 (294)
T ss_pred --ccccCEEEecCCcccCc
Confidence 24689999988866543
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.1e-08 Score=82.71 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=88.7
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
.+.||+.+..- ....+|..|||=-||||-+-+.+...|++++++|+.. |+.-++.|++.-++
T Consensus 182 ~P~lAR~mVNL-------a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i---------- 244 (347)
T COG1041 182 DPRLARAMVNL-------ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI---------- 244 (347)
T ss_pred CHHHHHHHHHH-------hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc----------
Confidence 45677776544 3566889999999999999999999999999999855 99999999998764
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc----------CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH----------LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~----------~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+... .+...++...+.+|.|+.. +.|..+ ....++..+.++|++||++.++.+
T Consensus 245 --~~~~~~~~--~Da~~lpl~~~~vdaIatD-PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 245 --EDYPVLKV--LDATNLPLRDNSVDAIATD-PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred --CceeEEEe--cccccCCCCCCccceEEec-CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 22222222 2333344445569999875 446432 367788888999999999888777
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-08 Score=89.47 Aligned_cols=100 Identities=18% Similarity=0.206 Sum_probs=70.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC------CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g------a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+++.|||+|||+|.++..+++.+ .+|++++- +.++..+++.+..|+. .++|+++..|..+..
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----------~~~V~vi~~d~r~v~ 254 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----------GDKVTVIHGDMREVE 254 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----------TTTEEEEES-TTTSC
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----------CCeEEEEeCcccCCC
Confidence 57899999999999998887765 36999997 5577777777677776 578999995544332
Q ss_pred CccccCCCccEEEEccc--ccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 137 HIKAVAPPFDYIIGTDV--VYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~--~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
. +.++|+||+--+ +-..+..+..+....+.|+|+|.++
T Consensus 255 ---l-pekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 255 ---L-PEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---H-SS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ---C-CCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 2 459999987432 2234467778888899999998765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-08 Score=80.97 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=76.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+.++|||||+|+|..++.+++. +.+++..|.|++++.+++ . ++|++...|+- +..
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~------~------------~rv~~~~gd~f--~~~--- 156 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE------A------------DRVEFVPGDFF--DPL--- 156 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH------T------------TTEEEEES-TT--TCC---
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc------c------------cccccccccHH--hhh---
Confidence 4468999999999999999876 457999999998888887 1 57899886664 111
Q ss_pred CCCccEEEEcccccCC--cCHHHHHHHHHHhcCCC--eEEEEEEEec
Q 027594 142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPK--TTILLGYEIR 184 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~--g~~~i~~~~r 184 (221)
+. +|+++.+.++++. +....+++.+.+.|+|| |+++|.....
T Consensus 157 P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 157 PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 23 9999999999874 45778999999999988 9999988763
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=83.49 Aligned_cols=76 Identities=20% Similarity=0.249 Sum_probs=59.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|.++..+++.+.+|+++|. +.+++.+++++... +++++...|.....
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~--------------~~v~ii~~D~~~~~---- 88 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA--------------GNVEIIEGDALKVD---- 88 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC--------------CCEEEEEeccccCC----
Confidence 446789999999999999999999889999998 45999998877541 36777776664432
Q ss_pred cCCCccEEEEcccccC
Q 027594 141 VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~ 156 (221)
...||.|++|.+++.
T Consensus 89 -~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 89 -LPEFNKVVSNLPYQI 103 (258)
T ss_pred -chhceEEEEcCCccc
Confidence 235899999988664
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.9e-08 Score=82.28 Aligned_cols=107 Identities=13% Similarity=-0.003 Sum_probs=71.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++||+||||+|..+..+++.. .+|+++|+ +++++.+++++....... ...++++...|.... +..
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~--------~~~~v~i~~~D~~~~--l~~ 141 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSY--------DDPRVDLQIDDGFKF--LAD 141 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccc--------cCCceEEEECchHHH--HHh
Confidence 34599999999999888877664 46999998 568999998875432100 123566555322111 111
Q ss_pred cCCCccEEEEcccccC--CcC--HHHHHHHHHHhcCCCeEEEEE
Q 027594 141 VAPPFDYIIGTDVVYA--EHL--LEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~--~~~--~~~l~~~~~~ll~~~g~~~i~ 180 (221)
..++||+|++..+... ... ...+++.+.++|+|||.+++.
T Consensus 142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 2468999998543211 111 467788999999999998875
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-08 Score=77.88 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=83.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
...-|||||||+|+.+-.+...|...+++|+ +.|++.+.+. +..+ .+...|.+.. +++.+
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~eg----------------dlil~DMG~G--lpfrp 110 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-ELEG----------------DLILCDMGEG--LPFRP 110 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-hhhc----------------CeeeeecCCC--CCCCC
Confidence 5568999999999999999999988999998 6699999862 1112 3445666643 45567
Q ss_pred CCccEEEEcccccC---------C--cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHH-HhcCC
Q 027594 143 PPFDYIIGTDVVYA---------E--HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM-WKSNF 200 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~---------~--~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~-~~~~f 200 (221)
..||-+|+-..+.+ . .-+..++.++..+|+++++.++-+...+....+.+... .+.+|
T Consensus 111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF 180 (270)
T KOG1541|consen 111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF 180 (270)
T ss_pred CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence 89998877554432 1 12445788888999999998887766665544444433 34554
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-08 Score=79.05 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=100.0
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHH-HHHHHhhh-ccccCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLK-RNVEWNTS-RISQMNP 117 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~-~n~~~n~~-~~~~~~~ 117 (221)
.+..|.+|+.+. ...++.+||..|||.|.-.+.+|.+|.+|+++|+++ +++.+. +|-..... .......
T Consensus 22 ~~p~L~~~~~~l--------~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~ 93 (218)
T PF05724_consen 22 PNPALVEYLDSL--------ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKR 93 (218)
T ss_dssp STHHHHHHHHHH--------TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEE
T ss_pred CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceee
Confidence 378888898763 233567999999999999999999999999999854 888773 22211110 0000000
Q ss_pred CCCCCCceEEEEEEecCCCCccc-cCCCccEEEEccccc--CCcCHHHHHHHHHHhcCCCeEEEE-EEEec-----Chh-
Q 027594 118 GSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILL-GYEIR-----STS- 187 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~~-~~~~fD~Vi~~d~~y--~~~~~~~l~~~~~~ll~~~g~~~i-~~~~r-----~~~- 187 (221)
...++|++...|. ..+.. ..++||+|+=.-++. .++..+..++.+.++|+|+|.+++ +.... .+.
T Consensus 94 --~~~~~i~~~~gDf---F~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf 168 (218)
T PF05724_consen 94 --YQAGRITIYCGDF---FELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPF 168 (218)
T ss_dssp --ETTSSEEEEES-T---TTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-
T ss_pred --ecCCceEEEEccc---ccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCC
Confidence 1134677777444 33322 224799998665544 478899999999999999999443 33211 111
Q ss_pred -H-HHHHHHHHhcCCeEEEecCCC
Q 027594 188 -V-HEQMLQMWKSNFNVKLVPKAK 209 (221)
Q Consensus 188 -~-~~~~~~~~~~~f~v~~v~~~~ 209 (221)
+ .+.+.+.+..+|+++.+....
T Consensus 169 ~v~~~ev~~l~~~~f~i~~l~~~~ 192 (218)
T PF05724_consen 169 SVTEEEVRELFGPGFEIEELEEED 192 (218)
T ss_dssp ---HHHHHHHHTTTEEEEEEEEEE
T ss_pred CCCHHHHHHHhcCCcEEEEEeccc
Confidence 1 355566778899988776544
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=78.87 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++++|||+|||+|..+..++.. +..++++|. +++++.+++ + ++.+...+..... ....
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~---------------~~~~~~~d~~~~l-~~~~ 72 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R---------------GVNVIQGDLDEGL-EAFP 72 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c---------------CCeEEEEEhhhcc-cccC
Confidence 5679999999999998888754 567899998 557776643 1 1344554443211 1123
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcC
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSG 172 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~ 172 (221)
+++||+|+++.++++..+...+++.+.+.++
T Consensus 73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 73 DKSFDYVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 5689999999999998888888887777655
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-08 Score=81.62 Aligned_cols=102 Identities=16% Similarity=0.038 Sum_probs=78.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~- 138 (221)
+.++|||||+++|.-++.+|.. +.+|+.+|. ++..+.|++|++..++ .++|++...+..+....
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----------~~~I~~~~G~a~e~L~~l 147 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----------AHKIDFREGPALPVLDQM 147 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeccHHHHHHHH
Confidence 4579999999999999998864 568999997 6688999999999886 57888887654332111
Q ss_pred cc---cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~~---~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.. ..++||+|+.. .+.......+..+.++|+|||.+++
T Consensus 148 ~~~~~~~~~fD~iFiD---adK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 148 IEDGKYHGTFDFIFVD---ADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HhccccCCcccEEEec---CCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 00 13689999975 3456677788888899999999775
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.2e-08 Score=89.16 Aligned_cols=133 Identities=14% Similarity=0.053 Sum_probs=83.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.++|||||||+|..+..+++.. .+|+++|+ +++++.+++|...+..... .-..+++++...|-.+. ...
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-----~~~dprv~vi~~Da~~~--l~~ 369 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG-----ALDDPRVTVVNDDAFNW--LRK 369 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-----ccCCCceEEEEChHHHH--HHh
Confidence 46799999999999998888775 47999998 6699999986432221000 00124677776443221 112
Q ss_pred cCCCccEEEEcccccCCc-----CHHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHhc-CCeEE
Q 027594 141 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKS-NFNVK 203 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~-----~~~~l~~~~~~ll~~~g~~~i~~~~--r~~~~~~~~~~~~~~-~f~v~ 203 (221)
..++||+|+++.+-.... .-+++++.+.++|+|||.+++-... ...+......+.+++ +|.+.
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~ 440 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT 440 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence 346899999863322111 1245888999999999998774321 112334445555555 47443
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=84.43 Aligned_cols=77 Identities=16% Similarity=0.135 Sum_probs=58.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|.++..+++.+.+|+++|. +++++.+++++.. +++++...|+.+...
T Consensus 40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---------------~~v~~i~~D~~~~~~--- 101 (272)
T PRK00274 40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---------------DNLTIIEGDALKVDL--- 101 (272)
T ss_pred CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---------------CceEEEEChhhcCCH---
Confidence 346789999999999999999999889999998 5699999876532 357788876654421
Q ss_pred cCCCccEEEEcccccC
Q 027594 141 VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~ 156 (221)
....++.|++|.+++-
T Consensus 102 ~~~~~~~vv~NlPY~i 117 (272)
T PRK00274 102 SELQPLKVVANLPYNI 117 (272)
T ss_pred HHcCcceEEEeCCccc
Confidence 1111589999988554
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.6e-08 Score=85.97 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=76.3
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~--ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.+|||+.||+|..|+.+++. |+ +|++.|. +++++.+++|++.|+. .++.+...|..... ..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------------~~~~v~~~Da~~~l--~~ 110 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------------ENIEVPNEDAANVL--RY 110 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEchhHHHHH--HH
Confidence 468999999999999999987 55 5999998 6799999999999975 35666664443321 11
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
...+||+|.. |+ |. ...+++..+.+.++++|.++++.
T Consensus 111 ~~~~fDvIdl-DP-fG--s~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 111 RNRKFHVIDI-DP-FG--TPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred hCCCCCEEEe-CC-CC--CcHHHHHHHHHhcccCCEEEEEe
Confidence 2357999988 56 43 33578888889999999999874
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.4e-08 Score=80.99 Aligned_cols=107 Identities=17% Similarity=0.230 Sum_probs=77.8
Q ss_pred eEEEeCCCccHHHHHHHHhC----CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC-Cccc
Q 027594 67 RVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA 140 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~g----a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~-~~~~ 140 (221)
++||+|||.|.....+.+-. -+|.+.|. +.+++..++|...+- .++.....|..... ..+.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------------~~~~afv~Dlt~~~~~~~~ 140 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-------------SRVEAFVWDLTSPSLKEPP 140 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-------------hhhcccceeccchhccCCC
Confidence 79999999998888777643 46999997 679999998877653 23343344443333 2233
Q ss_pred cCCCccEEEEccccc--CCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 141 VAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y--~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
..+++|+|.+-=++- +++.....+..+.++|||||.+++.+..++.
T Consensus 141 ~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 141 EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 467899987654433 4677889999999999999999998765554
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.2e-08 Score=78.53 Aligned_cols=123 Identities=16% Similarity=0.127 Sum_probs=80.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||-|.|+|.+++++++. | .+|+..|. ++-.+.|++|++.+++ .++|++...|....-
T Consensus 37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----------~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----------DDNVTVHHRDVCEEG 105 (247)
T ss_dssp T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----------CTTEEEEES-GGCG-
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----------CCCceeEecceeccc
Confidence 5668999999999999999999974 4 47999998 6699999999999987 568999887775322
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhc-CCCeEEEEEEEecChhHHHHHHHHHh-cCCe
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTILLGYEIRSTSVHEQMLQMWK-SNFN 201 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll-~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~ 201 (221)
........+|.|+.. + ......+..+.+.| ++||.+.+-.+. -.. ..+..+.++ .+|.
T Consensus 106 ~~~~~~~~~DavfLD-l----p~Pw~~i~~~~~~L~~~gG~i~~fsP~-ieQ-v~~~~~~L~~~gf~ 165 (247)
T PF08704_consen 106 FDEELESDFDAVFLD-L----PDPWEAIPHAKRALKKPGGRICCFSPC-IEQ-VQKTVEALREHGFT 165 (247)
T ss_dssp -STT-TTSEEEEEEE-S----SSGGGGHHHHHHHE-EEEEEEEEEESS-HHH-HHHHHHHHHHTTEE
T ss_pred ccccccCcccEEEEe-C----CCHHHHHHHHHHHHhcCCceEEEECCC-HHH-HHHHHHHHHHCCCe
Confidence 211224689999873 3 33445667777888 788886553322 122 234444444 3663
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.6e-08 Score=71.21 Aligned_cols=80 Identities=21% Similarity=0.242 Sum_probs=56.8
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCC
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL 121 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~-~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~ 121 (221)
.+++||.++. ...+++++||+|||+|. ++..+++.|.+|+++|. +++++.++.+ +
T Consensus 3 ~i~~~l~~~~-------~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~------------ 59 (134)
T PRK04148 3 TIAEFIAENY-------EKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G------------ 59 (134)
T ss_pred HHHHHHHHhc-------ccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C------------
Confidence 3678887763 33467899999999996 99999999999999998 5577766543 2
Q ss_pred CCceEEEEEEecCCCCccccCCCccEEEEc
Q 027594 122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGT 151 (221)
Q Consensus 122 ~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~ 151 (221)
+.+...|+.+... ..-..+|+|.+.
T Consensus 60 ---~~~v~dDlf~p~~--~~y~~a~liysi 84 (134)
T PRK04148 60 ---LNAFVDDLFNPNL--EIYKNAKLIYSI 84 (134)
T ss_pred ---CeEEECcCCCCCH--HHHhcCCEEEEe
Confidence 3556655544322 123567888775
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-08 Score=81.69 Aligned_cols=98 Identities=18% Similarity=0.160 Sum_probs=67.7
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCc
Q 027594 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~f 145 (221)
.++|+|||+|..++.+|.+--+|++||. +.|++.+++.-...-. . ...+... .+...+...+++.
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~-----~------t~~~ms~---~~~v~L~g~e~SV 101 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC-----H------TPSTMSS---DEMVDLLGGEESV 101 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc-----c------CCccccc---cccccccCCCcce
Confidence 8999999999889999988778999998 5599977753221110 0 0001100 0111122237899
Q ss_pred cEEEEcccccCCcCHHHHHHHHHHhcCCCe-EEEE
Q 027594 146 DYIIGTDVVYAEHLLEPLLQTIFALSGPKT-TILL 179 (221)
Q Consensus 146 D~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g-~~~i 179 (221)
|+|++..++|+.+ ++.+.+.+.++|++.| .+.+
T Consensus 102 DlI~~Aqa~HWFd-le~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 102 DLITAAQAVHWFD-LERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eeehhhhhHHhhc-hHHHHHHHHHHcCCCCCEEEE
Confidence 9999999988866 7899999999999776 4444
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.79 E-value=5.4e-08 Score=75.94 Aligned_cols=118 Identities=21% Similarity=0.319 Sum_probs=79.5
Q ss_pred eEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 67 RVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
+++|+|+|.|.+|+.+|-.- .+++++|. ..=+..++.-+..-++ +++++.+....+ .....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------------~nv~v~~~R~E~----~~~~~ 114 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------------SNVEVINGRAEE----PEYRE 114 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------------SSEEEEES-HHH----TTTTT
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------------CCEEEEEeeecc----cccCC
Confidence 79999999999999999764 46999996 4455666665555554 468888755544 23467
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh-hHHHHHHHHHhc-CCeEEEe
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQMWKS-NFNVKLV 205 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~-~~~~~~~~~~~~-~f~v~~v 205 (221)
+||+|++--+ ..+..++..+..+++++|.+++ ++.+.. +..+.....++. +..+..+
T Consensus 115 ~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~-~KG~~~~~El~~~~~~~~~~~~~~~~v 173 (184)
T PF02527_consen 115 SFDVVTARAV----APLDKLLELARPLLKPGGRLLA-YKGPDAEEELEEAKKAWKKLGLKVLSV 173 (184)
T ss_dssp -EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEE-EESS--HHHHHTHHHHHHCCCEEEEEE
T ss_pred CccEEEeehh----cCHHHHHHHHHHhcCCCCEEEE-EcCCChHHHHHHHHhHHHHhCCEEeee
Confidence 9999998654 6788999999999999999765 544332 223333444443 4444444
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.73 E-value=1e-07 Score=74.91 Aligned_cols=103 Identities=17% Similarity=0.142 Sum_probs=72.6
Q ss_pred eEEEeCCCccHHHHHHHHhCCE--EEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-----
Q 027594 67 RVIELGAGCGVAGFGMALLGCN--VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI----- 138 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~--v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~----- 138 (221)
+|||||||||--+..+|+.=.+ -.-+|.++ .+..++..+...+.. +-.....+|.......
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~-----------Nv~~P~~lDv~~~~w~~~~~~ 96 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLP-----------NVRPPLALDVSAPPWPWELPA 96 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCc-----------ccCCCeEeecCCCCCcccccc
Confidence 6999999999999999987554 45688744 556666666665431 1112234444433111
Q ss_pred cccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.....+||.|++..+++- .+..+.|++...++|++||.+++=
T Consensus 97 ~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 97 PLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred ccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 123568999999999886 567889999999999999998773
|
The function of this family is unknown. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=76.83 Aligned_cols=95 Identities=24% Similarity=0.190 Sum_probs=74.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.+..++||||+|.|-++..++.+-.+|++|+.+. |...++ +-+. .-+ ...+|.+.
T Consensus 93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~----~kg~------------~vl--~~~~w~~~------ 148 (265)
T PF05219_consen 93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLS----KKGF------------TVL--DIDDWQQT------ 148 (265)
T ss_pred ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHH----hCCC------------eEE--ehhhhhcc------
Confidence 3567899999999999999999989999999854 544443 3332 111 23345432
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
+.+||+|.+-.++=.......|++.+.+.|+|+|+++++.
T Consensus 149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 4589999999999888889999999999999999999874
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-07 Score=75.35 Aligned_cols=120 Identities=17% Similarity=0.368 Sum_probs=77.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHH-hCCE-EEEecchh-hHHHHHHHHHHhhhcc---c---------cCCCCC------
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQIE-VLPLLKRNVEWNTSRI---S---------QMNPGS------ 119 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~-~ga~-v~~~D~~~-~l~~~~~n~~~n~~~~---~---------~~~~~~------ 119 (221)
..+.++.+|||||-+|.+++.+|+ .|++ |+++|++. .++.|++|++.-.-.. . +..|-+
T Consensus 55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~ 134 (288)
T KOG2899|consen 55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD 134 (288)
T ss_pred cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence 567889999999999999999996 4775 99999954 8999999887422110 0 000000
Q ss_pred -----CCCCceEEEEEEe--cCCCCccccCCCccEEEEcccc------cCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 120 -----DLLGSIQAVELDW--GNEDHIKAVAPPFDYIIGTDVV------YAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 120 -----~~~~~v~~~~~dw--~~~~~~~~~~~~fD~Vi~~d~~------y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
...+++.+..... ...+.+....+.||+|+|-.+- ++.+-+..+++.+.++|.|||++++-
T Consensus 135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence 0011111111100 1111122346789999886553 23566889999999999999998874
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.69 E-value=7.5e-08 Score=75.01 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=75.8
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-----------EEEecc-hhhHHHHHHHHHHhhh
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-----------VITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~-----------v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
..+|.-|..-. ...++..|||--||+|.+.+.+|..+.. +++.|+ +++++.+++|+...+.
T Consensus 14 ~~lA~~ll~la-------~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 14 PTLAAALLNLA-------GWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp HHHHHHHHHHT-------T--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHh-------CCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 34555555442 3346779999999999999999876543 679998 6699999999998776
Q ss_pred ccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC--------cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--------HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~--------~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
...+.+...|..... .....+|+|++++|+-.. .....+++.+.+++++ ..+++..
T Consensus 87 -----------~~~i~~~~~D~~~l~---~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 87 -----------EDYIDFIQWDARELP---LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp -----------CGGEEEEE--GGGGG---GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred -----------CCceEEEecchhhcc---cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 356777765554433 345689999999886542 2344567777778888 4444433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=81.04 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=69.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++||+||||+|.....+.+.. .+|+++|+ +++++.+++....... +.+.-..+++++...|-... +..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~-----~~~~~~DpRV~vvi~Da~~f--L~~ 222 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSL-----NKSAFFDNRVNVHVCDAKEF--LSS 222 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchh-----ccccCCCCceEEEECcHHHH--HHh
Confidence 45699999999999877777764 47999998 5699999962111000 00000135777776544332 122
Q ss_pred cCCCccEEEEcccccCCc-------CHHHHHHHHHHhcCCCeEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEH-------LLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~-------~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
..++||+|++.-+ .+. .-..+++.+.+.|+|||++++-
T Consensus 223 ~~~~YDVIIvDl~--DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 223 PSSLYDVIIIDFP--DPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cCCCccEEEEcCC--CccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 3568999997621 111 1256889999999999997664
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.68 E-value=3e-07 Score=77.49 Aligned_cols=128 Identities=15% Similarity=0.067 Sum_probs=81.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.++||+||||.|.....+++.. .+|+++|+ +++++.+++.+...... -..++++++..|-..... ..
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--------~~dpRv~vi~~Da~~~l~-~~ 161 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--------FDDPRVNLHIGDGVEFLK-NA 161 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--------cCCCceEEEEChHHHHHh-hc
Confidence 46799999999999998888763 46999998 55999999987642210 013578777754221111 11
Q ss_pred cCCCccEEEEcc--cccCCc--CHHHHHHHHHHhcCCCeEEEEEEE--ecChhHHHHHHHHHhcCC
Q 027594 141 VAPPFDYIIGTD--VVYAEH--LLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNF 200 (221)
Q Consensus 141 ~~~~fD~Vi~~d--~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~--~r~~~~~~~~~~~~~~~f 200 (221)
..++||+|++.- +..... .-..+++.+.++|+|+|.+.+-.. .........+.+.+++.|
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F 227 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF 227 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence 246899999742 111111 135688999999999999764211 222334455566666666
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.8e-07 Score=74.48 Aligned_cols=125 Identities=16% Similarity=0.157 Sum_probs=80.5
Q ss_pred CCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+++++|||+|.|++|+.+|-.. .+||.+|. ..=+..++.-...-++ +++++.+.. .+....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------------~nv~i~~~R---aE~~~~- 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------------ENVEIVHGR---AEEFGQ- 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------------CCeEEehhh---Hhhccc-
Confidence 6899999999999999998553 45999995 4455555555555444 467777733 333221
Q ss_pred CCC-ccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH-hcCCeEEEecCCC
Q 027594 142 APP-FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAK 209 (221)
Q Consensus 142 ~~~-fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~-~~~f~v~~v~~~~ 209 (221)
..+ ||+|.+--+ ..+..+...+..++++||.++........+......... ..++.++.+..-.
T Consensus 132 ~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~ 197 (215)
T COG0357 132 EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLT 197 (215)
T ss_pred ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEee
Confidence 123 999998544 778899999999999999865432222223233333333 3366665554433
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.1e-07 Score=77.08 Aligned_cols=98 Identities=21% Similarity=0.168 Sum_probs=77.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.|.+|||+-||.|.+++.+|+.|+. |+++|+ |++++.+++|+.+|+. .+.+....+|-..... .
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----------~~~v~~i~gD~rev~~---~ 253 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----------EGRVEPILGDAREVAP---E 253 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----------cceeeEEeccHHHhhh---c
Confidence 5889999999999999999999986 999998 7899999999999997 4557777755443322 2
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
...+|-|+++-+- ....++....++++++|.+..
T Consensus 254 ~~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHy 287 (341)
T COG2520 254 LGVADRIIMGLPK----SAHEFLPLALELLKDGGIIHY 287 (341)
T ss_pred cccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEE
Confidence 2689999997553 344566677777888888665
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.8e-08 Score=74.47 Aligned_cols=78 Identities=21% Similarity=0.037 Sum_probs=56.4
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCc
Q 027594 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~f 145 (221)
.|+|+.||.|--++.+|+.+.+|+++|+ +.-++.++.|++.-+. .++|.++..||.+..........|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv-----------~~~I~~i~gD~~~~~~~~~~~~~~ 70 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV-----------ADNIDFICGDFFELLKRLKSNKIF 70 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT------------GGGEEEEES-HHHHGGGB------
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCCHHHHHhhccccccc
Confidence 6999999999999999999999999998 6699999999999876 478999999987753221112228
Q ss_pred cEEEEccccc
Q 027594 146 DYIIGTDVVY 155 (221)
Q Consensus 146 D~Vi~~d~~y 155 (221)
|+|+++||.-
T Consensus 71 D~vFlSPPWG 80 (163)
T PF09445_consen 71 DVVFLSPPWG 80 (163)
T ss_dssp SEEEE---BS
T ss_pred cEEEECCCCC
Confidence 9999998753
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=81.94 Aligned_cols=152 Identities=13% Similarity=0.032 Sum_probs=98.1
Q ss_pred eEEEEEcCeEEEEeeCCCCCcccceec-----c--hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027594 13 VINLEVLGHQLQFSQDPNSKHLGTTVW-----D--ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W-----~--~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ 85 (221)
.+.+.+.....+|..+........+-| + --..||.-|.... ....++..++|-+||+|.+.+.+|..
T Consensus 138 ~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a------~w~~~~~~l~DP~CGSGTilIEAa~~ 211 (702)
T PRK11783 138 RINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLRS------GWPQEGTPLLDPMCGSGTLLIEAAMM 211 (702)
T ss_pred EEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHHc------CCCCCCCeEEccCCCccHHHHHHHHH
Confidence 466666777787777653222211222 2 2335666555432 12235679999999999999988763
Q ss_pred C--------------------------------------------CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 86 G--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 86 g--------------------------------------------a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
+ .+++++|+ +.+++.+++|+..+++
T Consensus 212 ~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~---------- 281 (702)
T PRK11783 212 AADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGV---------- 281 (702)
T ss_pred HhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCC----------
Confidence 1 25899998 6699999999999987
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCC----cCHHHHHHHHHHhcC---CCeEEEEEEE
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSG---PKTTILLGYE 182 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~----~~~~~l~~~~~~ll~---~~g~~~i~~~ 182 (221)
.+.+.+...|+.+.... ...++||+|++|+|+... ..+..+...+.+.++ +|+.+++...
T Consensus 282 -~~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 282 -AELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred -CcceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45678877776554321 123479999999886542 234445555544443 7888776554
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.1e-07 Score=75.78 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=49.3
Q ss_pred CCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHh-hhccccCCCCCCCCCceEEEEEEecCC--CCc
Q 027594 65 GKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNE--DHI 138 (221)
Q Consensus 65 ~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~~dw~~~--~~~ 138 (221)
..++||||||. .+..|..++ .|-++++||+ +.+++.|++|++.| .+ .++|++....=... ..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----------~~~I~l~~~~~~~~i~~~i 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----------ESRIELRKQKNPDNIFDGI 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------------TTTEEEEE--ST-SSTTTS
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----------ccceEEEEcCCccccchhh
Confidence 56899999998 566777765 4789999998 55999999999999 76 57788765321111 111
Q ss_pred cccCCCccEEEEcccccCCc
Q 027594 139 KAVAPPFDYIIGTDVVYAEH 158 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~ 158 (221)
....+.||+.+||+|+|...
T Consensus 172 ~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 172 IQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp TT--S-EEEEEE-----SS-
T ss_pred hcccceeeEEecCCccccCh
Confidence 22346899999999999744
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.6e-07 Score=73.89 Aligned_cols=75 Identities=19% Similarity=0.242 Sum_probs=55.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|.++..+++.+.+|+++|. +.+++.++.+... .+++++...|......
T Consensus 27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--------------~~~v~v~~~D~~~~~~--- 89 (253)
T TIGR00755 27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--------------YERLEVIEGDALKVDL--- 89 (253)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--------------CCcEEEEECchhcCCh---
Confidence 346789999999999999999999989999998 5588888877643 1357777755543321
Q ss_pred cCCCcc---EEEEccccc
Q 027594 141 VAPPFD---YIIGTDVVY 155 (221)
Q Consensus 141 ~~~~fD---~Vi~~d~~y 155 (221)
..|| +|++|.+++
T Consensus 90 --~~~d~~~~vvsNlPy~ 105 (253)
T TIGR00755 90 --PDFPKQLKVVSNLPYN 105 (253)
T ss_pred --hHcCCcceEEEcCChh
Confidence 2455 888877644
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.9e-06 Score=66.88 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=93.1
Q ss_pred CcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchh-hHHHHHHHHHHh
Q 027594 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWN 108 (221)
Q Consensus 32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~-~l~~~~~n~~~n 108 (221)
.+-+...++.++.=+.|+.++ .+..|++||=||=. =+.|+++|.. .++|+.+|+++ .++.+++.+++.
T Consensus 20 ~DQ~~~T~eT~~~Ra~~~~~~--------gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~ 90 (243)
T PF01861_consen 20 LDQGYATPETTLRRAALMAER--------GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE 90 (243)
T ss_dssp GT---B-HHHHHHHHHHHHHT--------T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHhc--------CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc
Confidence 455777888889989999887 78899999999833 3667776654 46799999966 999999999998
Q ss_pred hhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCC-CeEEEEEEEecCh-
Q 027594 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILLGYEIRST- 186 (221)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~-~g~~~i~~~~r~~- 186 (221)
++ ++++...|..+.... ...++||+++. ||.|-.+.+.-++....+.|+. |+..|+++..+..
T Consensus 91 gl-------------~i~~~~~DlR~~LP~-~~~~~fD~f~T-DPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s 155 (243)
T PF01861_consen 91 GL-------------PIEAVHYDLRDPLPE-ELRGKFDVFFT-DPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEAS 155 (243)
T ss_dssp T---------------EEEE---TTS---T-TTSS-BSEEEE----SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--
T ss_pred CC-------------ceEEEEecccccCCH-HHhcCCCEEEe-CCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCc
Confidence 86 378887777655332 23579999996 5558888888999988888885 4478888877763
Q ss_pred -hHHHHHHHHH-hcCCeEEEec
Q 027594 187 -SVHEQMLQMW-KSNFNVKLVP 206 (221)
Q Consensus 187 -~~~~~~~~~~-~~~f~v~~v~ 206 (221)
..+..+.+.+ +.+|.++.+-
T Consensus 156 ~~~~~~~Q~~l~~~gl~i~dii 177 (243)
T PF01861_consen 156 PDKWLEVQRFLLEMGLVITDII 177 (243)
T ss_dssp HHHHHHHHHHHHTS--EEEEEE
T ss_pred HHHHHHHHHHHHHCCcCHHHHH
Confidence 2233444444 4588887653
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.2e-07 Score=75.85 Aligned_cols=133 Identities=15% Similarity=0.058 Sum_probs=78.3
Q ss_pred ecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccC
Q 027594 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQM 115 (221)
Q Consensus 38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~ 115 (221)
=|--+.++..|+.... ...++.+|||||||-|---.=+...+ ..++++|+ .++++.|++..........
T Consensus 43 NwvKs~LI~~~~~~~~-------~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~-- 113 (331)
T PF03291_consen 43 NWVKSVLIQKYAKKVK-------QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNN-- 113 (331)
T ss_dssp HHHHHHHHHHHCHCCC-------CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT--
T ss_pred HHHHHHHHHHHHHhhh-------ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccc--
Confidence 3666777777775331 22377899999999876555555455 46999998 4589999887743221000
Q ss_pred CCCCCCCCceEEEEE-EecCCCC------ccccCCCccEEEEcccccC----CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 116 NPGSDLLGSIQAVEL-DWGNEDH------IKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 116 ~~~~~~~~~v~~~~~-dw~~~~~------~~~~~~~fD~Vi~~d~~y~----~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
....+..+... -..+... ......+||+|-+--.+|. .+....++..+..+|+|||+++.+.+.
T Consensus 114 ----~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 114 ----SKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp -----HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred ----cccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 00011112111 1122211 1111359999988766654 455777999999999999999887764
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.7e-06 Score=66.94 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=75.8
Q ss_pred eecchHHH--HHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccc
Q 027594 37 TVWDASVV--FVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS 113 (221)
Q Consensus 37 ~~W~~~~~--la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~ 113 (221)
..||..++ +.+||.+. .++..|-|+|||-+.++-.+ ..+.+|...|. +. |
T Consensus 53 ~~WP~nPvd~iI~~l~~~----------~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-----------n----- 105 (219)
T PF05148_consen 53 KKWPVNPVDVIIEWLKKR----------PKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-----------N----- 105 (219)
T ss_dssp CTSSS-HHHHHHHHHCTS-----------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S-----
T ss_pred hcCCCCcHHHHHHHHHhc----------CCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC-----------C-----
Confidence 46887664 55566532 24579999999999888443 23456888885 21 1
Q ss_pred cCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHH
Q 027594 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQML 193 (221)
Q Consensus 114 ~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~ 193 (221)
+.| ...|. ...+..++..|+++.+=.+-. .++..++.+..|+|+|||.++|+.....-.-.+.|.
T Consensus 106 ---------~~V--tacdi---a~vPL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~ 170 (219)
T PF05148_consen 106 ---------PRV--TACDI---ANVPLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFI 170 (219)
T ss_dssp ---------TTE--EES-T---TS-S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHH
T ss_pred ---------CCE--EEecC---ccCcCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHH
Confidence 223 33333 334456789999998866555 458899999999999999999988765544567888
Q ss_pred HHHhc-CCeEEE
Q 027594 194 QMWKS-NFNVKL 204 (221)
Q Consensus 194 ~~~~~-~f~v~~ 204 (221)
+.++. ||.+..
T Consensus 171 ~~~~~~GF~~~~ 182 (219)
T PF05148_consen 171 KALKKLGFKLKS 182 (219)
T ss_dssp HHHHCTTEEEEE
T ss_pred HHHHHCCCeEEe
Confidence 88865 898864
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=66.65 Aligned_cols=84 Identities=12% Similarity=-0.006 Sum_probs=62.4
Q ss_pred EEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHH
Q 027594 90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIF 168 (221)
Q Consensus 90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~ 168 (221)
+++|. ++|++.++++...... ....++++...|. ..++..+++||+|+++.++++..+...+++.+.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---------~~~~~i~~~~~d~---~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~ 68 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---------SCYKCIEWIEGDA---IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMY 68 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---------cCCCceEEEEech---hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHH
Confidence 47898 5699999876543221 0023577777544 344455678999999999988889999999999
Q ss_pred HhcCCCeEEEEEEEecC
Q 027594 169 ALSGPKTTILLGYEIRS 185 (221)
Q Consensus 169 ~ll~~~g~~~i~~~~r~ 185 (221)
++|+|||.+++......
T Consensus 69 rvLkpGG~l~i~d~~~~ 85 (160)
T PLN02232 69 RVLKPGSRVSILDFNKS 85 (160)
T ss_pred HHcCcCeEEEEEECCCC
Confidence 99999999988765443
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.1e-07 Score=70.81 Aligned_cols=124 Identities=15% Similarity=0.112 Sum_probs=82.2
Q ss_pred CeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
..+||||||.|-..+.+|.... .++++|. ...+..+.+.+...++ .|+.+...|..........+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------------~Nv~~~~~da~~~l~~~~~~ 86 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------------KNVRFLRGDARELLRRLFPP 86 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------------SSEEEEES-CTTHHHHHSTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------------cceEEEEccHHHHHhhcccC
Confidence 3899999999999999987754 5999997 5678888777777765 68888885543322112235
Q ss_pred CCccEEEEc--ccccCCc------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc---CCeEE
Q 027594 143 PPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS---NFNVK 203 (221)
Q Consensus 143 ~~fD~Vi~~--d~~y~~~------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~---~f~v~ 203 (221)
+++|-|..+ ||..... .-+.++..+.++|+|||.+.+..-. ....+..++.+.+ .|+..
T Consensus 87 ~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~--~~y~~~~~~~~~~~~~~f~~~ 156 (195)
T PF02390_consen 87 GSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV--EEYAEWMLEQFEESHPGFENI 156 (195)
T ss_dssp TSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES---HHHHHHHHHHHHHHSTTEEEE
T ss_pred CchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHhcCcCeEEc
Confidence 788888654 4433222 3567999999999999999886543 3344455555544 46554
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=68.79 Aligned_cols=109 Identities=19% Similarity=0.258 Sum_probs=74.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CCE---EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-GCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-ga~---v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
+..+|.+.||+|+|+|.++-.++++ |+. ++++|. ++.++..++|++.....-.. ...-...++.+.. ++.
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~--~~~~~~~~l~ivv---GDg 153 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSES--SSKLKRGELSIVV---GDG 153 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchh--hhhhccCceEEEe---CCc
Confidence 3568999999999999999888854 543 489995 89999999999875421000 0000134555555 444
Q ss_pred CCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 136 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 136 ~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
........+||.|.+. .....+.+.+-..|+++|.+++-
T Consensus 154 r~g~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 154 RKGYAEQAPYDAIHVG------AAASELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cccCCccCCcceEEEc------cCccccHHHHHHhhccCCeEEEe
Confidence 4344456899999776 44455666677778899888774
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.7e-07 Score=70.84 Aligned_cols=129 Identities=19% Similarity=0.165 Sum_probs=85.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+|.+|||-..|.|..++.+++.|| +|+.++. +.++++++-|-=..++. ...+.++..|--+.- ...
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~----------~~~i~iilGD~~e~V-~~~ 201 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF----------EIAIKIILGDAYEVV-KDF 201 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc----------ccccEEecccHHHHH-hcC
Confidence 3789999999999999999999999 7888886 66888877553221110 124566553332211 123
Q ss_pred cCCCccEEEEcccccCCc---CHHHHHHHHHHhcCCCeEEEEE--EE---ecChhHHHHHHHHHhc-CCeE
Q 027594 141 VAPPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTTILLG--YE---IRSTSVHEQMLQMWKS-NFNV 202 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~---~~~~l~~~~~~ll~~~g~~~i~--~~---~r~~~~~~~~~~~~~~-~f~v 202 (221)
.+.+||+||-.++=+..+ .-+.|-+.+.++|+|||.++-- .+ -|..+......+.+.+ +|.+
T Consensus 202 ~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~ 272 (287)
T COG2521 202 DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEV 272 (287)
T ss_pred CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCcee
Confidence 467899999877766532 3567889999999999997531 11 1333444555566654 8874
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2e-06 Score=75.57 Aligned_cols=125 Identities=12% Similarity=0.109 Sum_probs=90.8
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (221)
++.+|-.++.+++ ....++.+||+-||||.+|+++|+.-.+|+++++ +++++-|+.|+..|++
T Consensus 367 ~aevLys~i~e~~-------~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi--------- 430 (534)
T KOG2187|consen 367 AAEVLYSTIGEWA-------GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI--------- 430 (534)
T ss_pred HHHHHHHHHHHHh-------CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc---------
Confidence 5778888888774 4556789999999999999999999899999997 7899999999999997
Q ss_pred CCCCceEEEEEEecCCCC-c-cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 120 DLLGSIQAVELDWGNEDH-I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 120 ~~~~~v~~~~~dw~~~~~-~-~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.+.+++...-.+... + ...-.+-++|...|+-. ......+++.+...-++.-.+|++...+.
T Consensus 431 ---sNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR-~Glh~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 431 ---SNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPR-KGLHMKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred ---cceeeeecchhhccchhcccCCCCCceEEEECCCc-ccccHHHHHHHHhccCccceEEEEcCHHH
Confidence 677777742112111 1 01112345554455544 45667788888888778888888776543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2e-05 Score=67.55 Aligned_cols=148 Identities=13% Similarity=0.052 Sum_probs=99.1
Q ss_pred eEEEEEcCeEEEEeeCCCCCcccceecch-------HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027594 13 VINLEVLGHQLQFSQDPNSKHLGTTVWDA-------SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~~-------~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ 85 (221)
.|.+.+.....+|..+.+......+=|+- -.-||.-|..- ..-..+..++|-=||+|.+.|.+|.+
T Consensus 140 ~i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~l-------agw~~~~pl~DPmCGSGTi~IEAAl~ 212 (381)
T COG0116 140 RINVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLL-------AGWKPDEPLLDPMCGSGTILIEAALI 212 (381)
T ss_pred EEEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHH-------cCCCCCCccccCCCCccHHHHHHHHh
Confidence 35566777788887776544433333432 12344444333 23345578999999999999999988
Q ss_pred CC-----------------------------------------EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCC
Q 027594 86 GC-----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG 123 (221)
Q Consensus 86 ga-----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 123 (221)
++ .+++.|+ +.+++.|+.|++..+. .+
T Consensus 213 ~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv-----------~d 281 (381)
T COG0116 213 AANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV-----------GD 281 (381)
T ss_pred ccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC-----------Cc
Confidence 74 3779998 6699999999999987 57
Q ss_pred ceEEEEEEecCCCCccccCCCccEEEEcccccC----CcC----HHHHHHHHHHhcCCCeEEEEEE
Q 027594 124 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EHL----LEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 124 ~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~----~~~----~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.|.+.+.|..+.... .+.+|+||+|+|+-. ... ...+.+++++.++.-+..+++.
T Consensus 282 ~I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 282 LIEFKQADATDLKEP---LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred eEEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 888888666554322 268999999998532 222 3344555556666666655543
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.4e-06 Score=72.46 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=73.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC---Cc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~---~~ 138 (221)
++..+++||||-|---+-.-+.|. +++++|+.+ .++.+++.-+.....-.. ..+ .+.+...|-.... ..
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~-----~~f-~a~f~~~Dc~~~~l~d~~ 190 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK-----FIF-TAVFIAADCFKERLMDLL 190 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc-----ccc-eeEEEEeccchhHHHHhc
Confidence 567899999999988777777776 499999977 899998766643210000 000 1333332221111 11
Q ss_pred cccCCCccEEEEcccccC----CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 139 KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~----~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...+++||+|-+-=++|. .+...-+++.+.++|+|||+++-..+.
T Consensus 191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 122345999977655553 455777899999999999998776654
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3e-06 Score=68.26 Aligned_cols=107 Identities=12% Similarity=0.001 Sum_probs=76.7
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
..+||||||.|-.-+.+|+...+ ++++|+ ...+..+.+.+.+.++ .|+.+...|-......-.++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------------~Nlri~~~DA~~~l~~~~~~ 117 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------------KNLRLLCGDAVEVLDYLIPD 117 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------------CcEEEEcCCHHHHHHhcCCC
Confidence 58999999999999999998875 899997 5677777776766654 36777765443332222334
Q ss_pred CCccEEEEc--ccccCCc------CHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 143 PPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 143 ~~fD~Vi~~--d~~y~~~------~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
++.|-|..+ ||-.-.. ..+.+++.+.+.|+|||.+.++....
T Consensus 118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence 478877554 4543222 25679999999999999999977543
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.1e-06 Score=63.44 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=84.0
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhhcc
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRI 112 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga---~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (221)
.+=|+|..+|+-+.+.. ....|+-|||+|.|||.++-++.++|. .++++++ ++-+..+.+..
T Consensus 28 aI~PsSs~lA~~M~s~I-------~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------- 93 (194)
T COG3963 28 AILPSSSILARKMASVI-------DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------- 93 (194)
T ss_pred eecCCcHHHHHHHHhcc-------CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-------
Confidence 45678888888887663 344788999999999999999998875 4899997 67776666532
Q ss_pred ccCCCCCCCCCceEEEEEEecCCCC-c-cccCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027594 113 SQMNPGSDLLGSIQAVELDWGNEDH-I-KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~dw~~~~~-~-~~~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+.++++++|--+... + ......||.|+++=++-+.+. --.+++.+...|.+||.++....
T Consensus 94 ----------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftY 157 (194)
T COG3963 94 ----------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTY 157 (194)
T ss_pred ----------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 223344433222210 1 123568999999987776443 34577778888889888775443
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=69.00 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=76.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
..+.++|||||.|.++-.+...|. +++.+|.+. |++.++..-. + .+.... -.++.+.+...
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p---------------~i~~~~-~v~DEE~Ldf~ 134 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-P---------------SIETSY-FVGDEEFLDFK 134 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-C---------------ceEEEE-Eecchhccccc
Confidence 346899999999999888877776 599999854 8887764211 1 122221 12455556667
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
++++|+||++-.+++.++++..+..|+..|||+|.++-+
T Consensus 135 ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias 173 (325)
T KOG2940|consen 135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS 173 (325)
T ss_pred ccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence 889999999999999999999999999999999987643
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.4e-06 Score=70.23 Aligned_cols=126 Identities=16% Similarity=0.183 Sum_probs=79.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++||.||+|.|..+..+.+.. .+|+++|+ +++++.+++.+..+... -..+++++...|-... +..
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--------~~dprv~v~~~Da~~~--L~~ 172 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--------FCDKRLELIINDARAE--LEK 172 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--------ccCCceEEEEChhHHH--Hhh
Confidence 45799999999999988777653 46999998 66999999887654310 0135677766433222 122
Q ss_pred cCCCccEEEEcccccCC-----c---CHHHHHH-HHHHhcCCCeEEEEEEEe----cChhHHHHHHHHHhcCCe
Q 027594 141 VAPPFDYIIGTDVVYAE-----H---LLEPLLQ-TIFALSGPKTTILLGYEI----RSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~-----~---~~~~l~~-~~~~ll~~~g~~~i~~~~----r~~~~~~~~~~~~~~~f~ 201 (221)
..++||+|+.. +. .+ . .-..+++ .+.+.|+|+|.+++-... ..........+.+++.|.
T Consensus 173 ~~~~yDvIi~D-~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~ 244 (336)
T PLN02823 173 RDEKFDVIIGD-LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK 244 (336)
T ss_pred CCCCccEEEec-CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC
Confidence 35689999974 21 11 0 1235676 889999999997653221 122334445555555553
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=72.70 Aligned_cols=81 Identities=15% Similarity=0.049 Sum_probs=51.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC----------CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEe
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG----------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 132 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g----------a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw 132 (221)
.+.+|||.+||+|.+.+.++... ..+++.|+ +.+++.++.|+...+. ..+.+...+.
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------------~~~~i~~~d~ 98 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------------LEINVINFNS 98 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------------CCceeeeccc
Confidence 45699999999999888776431 34899998 5699999999876541 1122222221
Q ss_pred cCCCC--ccccCCCccEEEEcccccC
Q 027594 133 GNEDH--IKAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 133 ~~~~~--~~~~~~~fD~Vi~~d~~y~ 156 (221)
..... .....++||+||+|||+-.
T Consensus 99 l~~~~~~~~~~~~~fD~IIgNPPy~~ 124 (524)
T TIGR02987 99 LSYVLLNIESYLDLFDIVITNPPYGR 124 (524)
T ss_pred ccccccccccccCcccEEEeCCCccc
Confidence 11100 0112358999999999653
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.27 E-value=8.4e-06 Score=68.82 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=76.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHH---------hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEe
Q 027594 63 LKGKRVIELGAGCGVAGFGMAL---------LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 132 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~---------~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw 132 (221)
.++.+|+|-.||+|.+-+.+.. ...++++.|+ +.++..++.|+..++.. .....+..
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----------~~~~~i~~--- 111 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----------NSNINIIQ--- 111 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----------CBGCEEEE---
T ss_pred cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----------cccccccc---
Confidence 3567899999999988777765 2456999998 55999999998876642 12223333
Q ss_pred cCCCCccc--cCCCccEEEEcccccCC--c-------------------CHHHHHHHHHHhcCCCeEEEEEEEecC---h
Q 027594 133 GNEDHIKA--VAPPFDYIIGTDVVYAE--H-------------------LLEPLLQTIFALSGPKTTILLGYEIRS---T 186 (221)
Q Consensus 133 ~~~~~~~~--~~~~fD~Vi~~d~~y~~--~-------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~---~ 186 (221)
++...... ...+||+|++++|+-.. . .--.++..+.+.|+++|++.+..+... .
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~ 191 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSS 191 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGS
T ss_pred cccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhcc
Confidence 33222111 14689999999986432 0 012367777888999999877766422 1
Q ss_pred hHHHHHHHHHhcCCeEE
Q 027594 187 SVHEQMLQMWKSNFNVK 203 (221)
Q Consensus 187 ~~~~~~~~~~~~~f~v~ 203 (221)
.....+.+.+-+...++
T Consensus 192 ~~~~~iR~~ll~~~~i~ 208 (311)
T PF02384_consen 192 SSEKKIRKYLLENGYIE 208 (311)
T ss_dssp THHHHHHHHHHHHEEEE
T ss_pred chHHHHHHHHHhhchhh
Confidence 12344555544444443
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-06 Score=68.18 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=77.6
Q ss_pred CCCCeEEEeCCCccHHHHHH-HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGM-ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~-a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
....++||.|||.|.++--+ .....+|-++|. +..++.|++.+..... ....+.+....+.. .
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~------------~v~~~~~~gLQ~f~---P 118 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP------------RVGEFYCVGLQDFT---P 118 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC------------CEEEEEES-GGG------
T ss_pred CCcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC------------CcceEEecCHhhcc---C
Confidence 34569999999999999755 455667999997 6688888865544221 12333433222221 2
Q ss_pred cCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEecCh-------------hHHHHHHHHHh-cCCeEE
Q 027594 141 VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVK 203 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~-------------~~~~~~~~~~~-~~f~v~ 203 (221)
...+||+|+...|+-+ .+++-.+++.|...|+|+|.+++=.-.-.. ...+.|.+.++ .++++.
T Consensus 119 ~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 119 EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp -TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEE
Confidence 2468999999999877 556888999999999999998873211100 12466667665 588774
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-06 Score=68.84 Aligned_cols=153 Identities=17% Similarity=0.227 Sum_probs=69.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHH-HhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMA-LLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a-~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++...+|||||.|-+-+.+| ..+.+ ++++++ +...+.++.+.+.......... ....++.+...|..+.+..
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g---~~~~~v~l~~gdfl~~~~~ 116 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG---KRPGKVELIHGDFLDPDFV 116 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT---B---EEEEECS-TTTHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh---cccccceeeccCccccHhH
Confidence 4467899999999998877766 45665 999997 5555555554433221100000 0023455554333221111
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHH---HHHHHHhcCCeEEEecCCCCCcccC
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHE---QMLQMWKSNFNVKLVPKAKESTMWG 215 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~---~~~~~~~~~f~v~~v~~~~~~~~~~ 215 (221)
...-...|+|+++...|.++....| ..+..-|++|.+++ +...-.+...+ .-...+..-+++++........-|.
T Consensus 117 ~~~~s~AdvVf~Nn~~F~~~l~~~L-~~~~~~lk~G~~II-s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~vSWt 194 (205)
T PF08123_consen 117 KDIWSDADVVFVNNTCFDPDLNLAL-AELLLELKPGARII-STKPFCPRRRSINSRNLDDIFAILKVEELEYVEGSVSWT 194 (205)
T ss_dssp HHHGHC-SEEEE--TTT-HHHHHHH-HHHHTTS-TT-EEE-ESS-SS-TT----TTSTTSGGGCEEEEEEE--TT-BTTC
T ss_pred hhhhcCCCEEEEeccccCHHHHHHH-HHHHhcCCCCCEEE-ECCCcCCCCcccchhhccChhhEEEEeecccCCCceeec
Confidence 1112357999999999987766666 44445578887764 43322221111 0011122345666666655555555
Q ss_pred CCCC
Q 027594 216 NPLG 219 (221)
Q Consensus 216 ~~~~ 219 (221)
+..|
T Consensus 195 ~~~~ 198 (205)
T PF08123_consen 195 SNSG 198 (205)
T ss_dssp SSB-
T ss_pred CCCc
Confidence 5444
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.3e-06 Score=66.01 Aligned_cols=96 Identities=21% Similarity=0.227 Sum_probs=73.0
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
..+-|||+|+|.+|+.+|...-+|++++. |....++++|+..++. .++.++..|-.+.+ -..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~------------~n~evv~gDA~~y~-----fe~ 96 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD------------VNWEVVVGDARDYD-----FEN 96 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC------------cceEEEeccccccc-----ccc
Confidence 58999999999999999998667999996 7788999999987774 78888885544432 246
Q ss_pred ccEEEEc--ccccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 145 FDYIIGT--DVVYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 145 fD~Vi~~--d~~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
.|+|+|- |...-.+..-+++..+.+.|+.++.++
T Consensus 97 ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 97 ADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 7888864 444444555677777777888777654
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-05 Score=67.51 Aligned_cols=109 Identities=16% Similarity=0.186 Sum_probs=74.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+|.+|||++||.|.=+..+|.+ + ..|++.|+ +.-++.+++|+++.++ .++.+...|-....
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------------~nv~v~~~D~~~~~-- 177 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------------SNVALTHFDGRVFG-- 177 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCchhhhh--
Confidence 37789999999999888887754 2 36999998 5589999999999875 45655553322111
Q ss_pred cccCCCccEEEEccccc------CCc----------------CHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 139 KAVAPPFDYIIGTDVVY------AEH----------------LLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y------~~~----------------~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
......||.|+...+.- ... .-..++....++|+|||+++.+...-.
T Consensus 178 ~~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~ 246 (470)
T PRK11933 178 AALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN 246 (470)
T ss_pred hhchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence 11245799999643321 111 124577777888999999876655433
|
|
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.8e-05 Score=63.52 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=69.1
Q ss_pred cchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCC
Q 027594 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
-+++..|.+.+..............+|++||||||++|-.+-.+.+.|++|+++|...+-+.+ ..
T Consensus 186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L----~~----------- 250 (357)
T PRK11760 186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSL----MD----------- 250 (357)
T ss_pred ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhh----hC-----------
Confidence 456777777765432111111134689999999999999999999999999999964333222 11
Q ss_pred CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCC--eEEEEEEE
Q 027594 119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK--TTILLGYE 182 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~--g~~~i~~~ 182 (221)
.++|.....+=-.. .+ ...++|++++ |+.-.+... ...+.+-+..| ..+++..+
T Consensus 251 ---~~~V~h~~~d~fr~--~p-~~~~vDwvVc-Dmve~P~rv---a~lm~~Wl~~g~cr~aIfnLK 306 (357)
T PRK11760 251 ---TGQVEHLRADGFKF--RP-PRKNVDWLVC-DMVEKPARV---AELMAQWLVNGWCREAIFNLK 306 (357)
T ss_pred ---CCCEEEEeccCccc--CC-CCCCCCEEEE-ecccCHHHH---HHHHHHHHhcCcccEEEEEEE
Confidence 23555554321111 11 1568999986 666554433 33333433332 34444443
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.7e-05 Score=63.22 Aligned_cols=119 Identities=8% Similarity=-0.111 Sum_probs=80.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
..++||=+|.|-|...-.+.+...+|+++|++ ++++.+++-+...... -..+++++.. |-. ....
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~--------~~DpRv~l~~--~~~----~~~~ 137 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEV--------KNNKNFTHAK--QLL----DLDI 137 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHh--------hcCCCEEEee--hhh----hccC
Confidence 45799999999999999999887799999994 5999998844432211 0135666654 211 1123
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE--EecChhHHHHHHHHHhcCCe
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY--EIRSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~--~~r~~~~~~~~~~~~~~~f~ 201 (221)
++||+||. |..+. +.+.+.+.+.|+|+|.+..=. +.-..+......+.+++.|.
T Consensus 138 ~~fDVIIv-Ds~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~ 193 (262)
T PRK00536 138 KKYDLIIC-LQEPD----IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS 193 (262)
T ss_pred CcCCEEEE-cCCCC----hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence 68999996 55444 567788999999999976621 22223344555566666776
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.5e-06 Score=68.61 Aligned_cols=117 Identities=22% Similarity=0.249 Sum_probs=74.9
Q ss_pred CCeEEEeCCCcc----HHHHHHHHh------CCEEEEecc-hhhHHHHHHHHHHh----hhcc----ccCCCC-------
Q 027594 65 GKRVIELGAGCG----VAGFGMALL------GCNVITTDQ-IEVLPLLKRNVEWN----TSRI----SQMNPG------- 118 (221)
Q Consensus 65 ~~~vLelGcG~G----~~~l~~a~~------ga~v~~~D~-~~~l~~~~~n~~~n----~~~~----~~~~~~------- 118 (221)
..+|+-.||.|| .+++.+... ..+|++||+ +.+++.|++.+-.. +++. ..+.+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 369999999999 334444432 136999998 45999998753211 1100 011110
Q ss_pred ----CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 119 ----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 119 ----~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
......|.+...+..+.. . ....+||+|++.+++.+ .+....+++.+.+.|+|||.+++.+..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~-~-~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQ-W-AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSE 264 (287)
T ss_pred EEEChHHHccCEEEcccCCCCC-C-ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCcc
Confidence 012345677776654421 1 12468999999887644 466889999999999999998886643
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.1e-06 Score=65.10 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=66.6
Q ss_pred CCCeEEEeCCCccH----HHHHHHHh-----C--CEEEEecch-hhHHHHHHHHHHh----hhcc----ccC-C-CC---
Q 027594 64 KGKRVIELGAGCGV----AGFGMALL-----G--CNVITTDQI-EVLPLLKRNVEWN----TSRI----SQM-N-PG--- 118 (221)
Q Consensus 64 ~~~~vLelGcG~G~----~~l~~a~~-----g--a~v~~~D~~-~~l~~~~~n~~~n----~~~~----~~~-~-~~--- 118 (221)
+..+|+-.||+||- +++.+... + .+|++||++ .+++.|++-+-.. +++. ..+ . .+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999993 34444441 1 369999984 5988887632110 0000 001 0 00
Q ss_pred ---CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 119 ---SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 119 ---~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.....+|++..++..+ ......+||+|+|-.++-. .+....+++.+.+.|+|||.+++...
T Consensus 111 ~v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp TE-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT
T ss_pred eEChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 0123468888877665 1223578999999988533 56678899999999999999999654
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=5e-05 Score=60.50 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=75.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
....+++||||.=||.-++..|.. +.+|++.|+ .++.+...+-.+..+. ..+|+++..+-.+.-+
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----------~~KI~~i~g~a~esLd 139 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----------DHKITFIEGPALESLD 139 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----------cceeeeeecchhhhHH
Confidence 346789999999999888887754 678999998 5588888777777766 5678887743222211
Q ss_pred -c--cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 138 -I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 138 -~--~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
+ ....+.||+++.. .+..........+.+++++||.+++
T Consensus 140 ~l~~~~~~~tfDfaFvD---adK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 140 ELLADGESGTFDFAFVD---ADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred HHHhcCCCCceeEEEEc---cchHHHHHHHHHHHhhcccccEEEE
Confidence 1 1235789999986 4444455777888899999999876
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.4e-06 Score=71.53 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=65.4
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc-cCC
Q 027594 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAP 143 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~-~~~ 143 (221)
.|||+|+|||++|+.+++.|+. ||+++. ..|.+++++-...|+. .++|++++- ...+... ...
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----------SdkI~vInk---rStev~vg~~~ 134 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----------SDKINVINK---RSTEVKVGGSS 134 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----------ccceeeecc---ccceeeecCcc
Confidence 6999999999999999999985 999996 6799999999999987 567777652 2222211 123
Q ss_pred CccEEEEccccc---CCcCHHHHHHHHHHhcCCCeE
Q 027594 144 PFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTT 176 (221)
Q Consensus 144 ~fD~Vi~~d~~y---~~~~~~~l~~~~~~ll~~~g~ 176 (221)
..|+++..+..- .+..++.+-....++++++..
T Consensus 135 RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 135 RADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCK 170 (636)
T ss_pred hhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCe
Confidence 456665543321 233455555556666776543
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=64.77 Aligned_cols=80 Identities=14% Similarity=0.071 Sum_probs=59.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||||+|.|.++..+++.+++|++++++ .+++.+++.... .++++++..|....+....
T Consensus 28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--------------~~n~~vi~~DaLk~d~~~l 93 (259)
T COG0030 28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP--------------YDNLTVINGDALKFDFPSL 93 (259)
T ss_pred CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc--------------ccceEEEeCchhcCcchhh
Confidence 3457899999999999999999999999999984 588888876552 3567888765544432111
Q ss_pred cCCCccEEEEcccccCC
Q 027594 141 VAPPFDYIIGTDVVYAE 157 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~ 157 (221)
. .++.|++|=|++-.
T Consensus 94 ~--~~~~vVaNlPY~Is 108 (259)
T COG0030 94 A--QPYKVVANLPYNIS 108 (259)
T ss_pred c--CCCEEEEcCCCccc
Confidence 1 68999998776643
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.3e-05 Score=62.11 Aligned_cols=113 Identities=11% Similarity=-0.012 Sum_probs=85.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-G---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
+..+||||-||.|..=+-+... . .+|++.|+ +..++..++-++.+++ .+.+++.+.|-.+....
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----------~~i~~f~~~dAfd~~~l 203 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----------EDIARFEQGDAFDRDSL 203 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----------ccceEEEecCCCCHhHh
Confidence 5569999999999776555432 2 35999998 5599999999999987 34558888766555555
Q ss_pred cccCCCccEEEEcccccCCcC---HHHHHHHHHHhcCCCeEEEEEEEecChh
Q 027594 139 KAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~---~~~l~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
......+++++.|.++-..++ +...++-+..++.|||+++.+.+..++.
T Consensus 204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 555677899999988654443 5667778888899999988877666664
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=71.21 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=78.9
Q ss_pred cccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEe---cchh-hHHHHHHHHHHh
Q 027594 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITT---DQIE-VLPLLKRNVEWN 108 (221)
Q Consensus 33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~---D~~~-~l~~~~~n~~~n 108 (221)
+.|+....++....+.|.+-+... .....=..+||+|||+|.+|..+..++-.+..+ |..+ .++.|.+ -
T Consensus 89 gggt~F~~Ga~~Yid~i~~~~~~~---~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale----R 161 (506)
T PF03141_consen 89 GGGTMFPHGADHYIDQIAEMIPLI---KWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE----R 161 (506)
T ss_pred CCCccccCCHHHHHHHHHHHhhcc---ccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh----c
Confidence 345555556666666666553110 000111369999999999999999888764333 3222 2333321 1
Q ss_pred hhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC-HHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-LEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~-~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
+++ .-+.+ .....++.+.+.||+|-++.|+-.... -.-++-.+.++|+|||+++++.+.-+
T Consensus 162 Gvp-----------a~~~~-----~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 162 GVP-----------AMIGV-----LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred Ccc-----------hhhhh-----hccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence 221 01111 112345667889999999988765332 24578889999999999999877644
|
; GO: 0008168 methyltransferase activity |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.5e-05 Score=63.70 Aligned_cols=98 Identities=19% Similarity=0.268 Sum_probs=69.7
Q ss_pred cccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhc
Q 027594 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSR 111 (221)
Q Consensus 33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~ 111 (221)
+.|.++=....++..-+... ...++..|||+|-|||.++..+...|++|++++. +-|+..+++..+---
T Consensus 35 d~GQHilkNp~v~~~I~~ka--------~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp-- 104 (315)
T KOG0820|consen 35 DFGQHILKNPLVIDQIVEKA--------DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP-- 104 (315)
T ss_pred ccchhhhcCHHHHHHHHhcc--------CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC--
Confidence 45666666655555555433 4557779999999999999999999999999998 558888777654321
Q ss_pred cccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccc
Q 027594 112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV 154 (221)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~ 154 (221)
...+.++...|.-.. ....||++|+|-++
T Consensus 105 ---------~~~kLqV~~gD~lK~-----d~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 105 ---------KSGKLQVLHGDFLKT-----DLPRFDGCVSNLPY 133 (315)
T ss_pred ---------ccceeeEEecccccC-----CCcccceeeccCCc
Confidence 135677777555333 24679999986553
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.8e-05 Score=61.63 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=74.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
....|-|+|||-+-++. ..-.+|...|.-. . +-++...|..+ .+..++
T Consensus 180 ~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------~----------------~~~V~~cDm~~---vPl~d~ 227 (325)
T KOG3045|consen 180 KNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------V----------------NERVIACDMRN---VPLEDE 227 (325)
T ss_pred CceEEEecccchhhhhh---ccccceeeeeeec----------C----------------CCceeeccccC---CcCccC
Confidence 45689999999886654 3334588888511 0 11334444444 445678
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEE
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~ 204 (221)
+.|+++.+-.+.. .++..++..+.++|++||.+||+...........|...+. -+|.+..
T Consensus 228 svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~~ 288 (325)
T KOG3045|consen 228 SVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVKH 288 (325)
T ss_pred cccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHHHHcCCeeee
Confidence 9999998766554 5588999999999999999999886544443556777774 4887754
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=58.76 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=46.8
Q ss_pred eEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
++||+|||.|..++.+++.+. +|+++|. +++.+.+++|++.|+. .++.+....+++.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------------~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------------PNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------------CcEEEEEeeeeCC
Confidence 489999999999999998876 5999996 7799999999999875 3466666665544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=65.73 Aligned_cols=119 Identities=16% Similarity=0.147 Sum_probs=76.9
Q ss_pred CCCeEEEeCCCcc----HHHHHHHHhC-------CEEEEecchh-hHHHHHHHHHH-----hhhcc----ccCCCC----
Q 027594 64 KGKRVIELGAGCG----VAGFGMALLG-------CNVITTDQIE-VLPLLKRNVEW-----NTSRI----SQMNPG---- 118 (221)
Q Consensus 64 ~~~~vLelGcG~G----~~~l~~a~~g-------a~v~~~D~~~-~l~~~~~n~~~-----n~~~~----~~~~~~---- 118 (221)
+..+|.-.||+|| .+++.+.... .+|++||++. +++.|+.-+-. -+++. ..+...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 4579999999999 3444444432 3699999954 99988753322 11111 011111
Q ss_pred ----CCCCCceEEEEEEecCCCCccccCCCccEEEEcccc-cC-CcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 119 ----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVV-YA-EHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 119 ----~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~-y~-~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
......|.+..++...... ..+.||+|+|-+++ |. .+.-..++..+...|+|||.+++.+...-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~ 245 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETI 245 (268)
T ss_pred EEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCccc
Confidence 1123456666655443322 35789999998874 43 66778899999999999999999776544
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00021 Score=61.59 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh----CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL----GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~----ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+|.+|||+.++.|-=+..+|.+ |..|++.|.+ .=++.++.|+.+.+. .++.+...|-....
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------------~nv~~~~~d~~~~~ 221 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------------RNVIVVNKDARRLA 221 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CceEEEeccccccc
Confidence 347889999999998766655543 3457999984 589999999999886 44555554433222
Q ss_pred CccccCCCccEEEEccccc------C-C---------------cCHHHHHHHHHHhcCCCeEEEEEEEecChh
Q 027594 137 HIKAVAPPFDYIIGTDVVY------A-E---------------HLLEPLLQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y------~-~---------------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
.......+||.|+...+-- . + .....++....++++|||.++.+.....+.
T Consensus 222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e 294 (355)
T COG0144 222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE 294 (355)
T ss_pred ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence 2222233699998854421 1 1 124457777888899999988877655543
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00012 Score=58.76 Aligned_cols=117 Identities=19% Similarity=0.119 Sum_probs=78.6
Q ss_pred ceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecch--hhHHHHHHHHHHhhhcc
Q 027594 36 TTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI--EVLPLLKRNVEWNTSRI 112 (221)
Q Consensus 36 ~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~--~~l~~~~~n~~~n~~~~ 112 (221)
..+-+++..|...+... .-+.+|+.|||+|+-||-++-.+.+.||+ |+++|.. ..-.-+|.
T Consensus 58 ~yVSRG~~KL~~ale~F-------~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~--------- 121 (245)
T COG1189 58 PYVSRGGLKLEKALEEF-------ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN--------- 121 (245)
T ss_pred CccccHHHHHHHHHHhc-------CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---------
Confidence 34556789999999876 56789999999999999999999999985 9999963 33333332
Q ss_pred ccCCCCCCCCCceEEEE-EEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 113 SQMNPGSDLLGSIQAVE-LDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 113 ~~~~~~~~~~~~v~~~~-~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.++|.+.. .+....... ...+..|++++. + ..-++..++..+..+++|++.++.-.
T Consensus 122 ---------d~rV~~~E~tN~r~l~~~-~~~~~~d~~v~D-v--SFISL~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 122 ---------DPRVIVLERTNVRYLTPE-DFTEKPDLIVID-V--SFISLKLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred ---------CCcEEEEecCChhhCCHH-HcccCCCeEEEE-e--ehhhHHHHHHHHHHhcCCCceEEEEe
Confidence 13343322 121111111 123467888864 3 22457788888899999988766543
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.1e-05 Score=68.32 Aligned_cols=107 Identities=12% Similarity=0.051 Sum_probs=73.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+..+||||||.|-..+.+|....+ ++++|. ...+..+.+.+...++ .|+.+...+...... ..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------------~N~~~~~~~~~~~~~-~~ 413 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------------TNFLLFPNNLDLILN-DL 413 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------------CeEEEEcCCHHHHHH-hc
Confidence 4678999999999999999988664 899997 4455555555555443 466666544321111 12
Q ss_pred cCCCccEEEEc--ccccCCc------CHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGT--DVVYAEH------LLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~--d~~y~~~------~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.++++|-|..+ ||..-.. ..+.++..+.++|+|||.++++.-.
T Consensus 414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 35678888665 4543222 2567999999999999999986543
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0003 Score=55.94 Aligned_cols=116 Identities=15% Similarity=0.086 Sum_probs=70.8
Q ss_pred EEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 68 VIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 68 vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
|.|+||--|.+++.|.+.|. +++++|+ +..++.++.|++.+++ .+++.+.. ++....-.+.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----------~~~i~~rl---gdGL~~l~~~e~ 66 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----------EDRIEVRL---GDGLEVLKPGED 66 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------------TTTEEEEE----SGGGG--GGG-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------cccEEEEE---CCcccccCCCCC
Confidence 68999999999999999986 5999998 5599999999999887 56787776 332221112234
Q ss_pred ccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeE
Q 027594 145 FDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 202 (221)
Q Consensus 145 fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v 202 (221)
.|.|+.+.+=- ..+..++......++....+ +..+.......++|+. +.+|.+
T Consensus 67 ~d~ivIAGMGG--~lI~~ILe~~~~~~~~~~~l-ILqP~~~~~~LR~~L~--~~gf~I 119 (205)
T PF04816_consen 67 VDTIVIAGMGG--ELIIEILEAGPEKLSSAKRL-ILQPNTHAYELRRWLY--ENGFEI 119 (205)
T ss_dssp --EEEEEEE-H--HHHHHHHHHTGGGGTT--EE-EEEESS-HHHHHHHHH--HTTEEE
T ss_pred CCEEEEecCCH--HHHHHHHHhhHHHhccCCeE-EEeCCCChHHHHHHHH--HCCCEE
Confidence 68887665422 23444444444445444444 4467666655666554 356766
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0007 Score=53.98 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=87.8
Q ss_pred ccceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hC--CEEEEecc-hhhHHHHHHHHHHh
Q 027594 34 LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LG--CNVITTDQ-IEVLPLLKRNVEWN 108 (221)
Q Consensus 34 ~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~-~g--a~v~~~D~-~~~l~~~~~n~~~n 108 (221)
...++|+--. .||..+...... ....+|.+||-||+.+|..--.++- .| ..|++++. +...+.+-. ++..
T Consensus 46 ~eYR~W~P~RSKLaAai~~Gl~~----~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~-la~~ 120 (229)
T PF01269_consen 46 VEYRVWNPFRSKLAAAILKGLEN----IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLN-LAKK 120 (229)
T ss_dssp EEEEEE-TTT-HHHHHHHTT-S------S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH-HHHH
T ss_pred cceeecCchhhHHHHHHHcCccc----cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHH-Hhcc
Confidence 3677887632 455555433211 2456789999999999976666654 34 35999997 444333332 2221
Q ss_pred hhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh-
Q 027594 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS- 187 (221)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~- 187 (221)
..||-.+-.|-..+..-...-+..|+|++ |+. .++..+-++......||+||.++++.+.|+-+
T Consensus 121 -------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~-DVa-Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~ 185 (229)
T PF01269_consen 121 -------------RPNIIPILEDARHPEKYRMLVEMVDVIFQ-DVA-QPDQARIAALNARHFLKPGGHLIISIKARSIDS 185 (229)
T ss_dssp -------------STTEEEEES-TTSGGGGTTTS--EEEEEE-E-S-STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-S
T ss_pred -------------CCceeeeeccCCChHHhhcccccccEEEe-cCC-ChHHHHHHHHHHHhhccCCcEEEEEEecCcccC
Confidence 13455554333333222222457888885 554 45667788888889999999999998875532
Q ss_pred ------HHHHHHHHHhc-CCeE-EEecCCC
Q 027594 188 ------VHEQMLQMWKS-NFNV-KLVPKAK 209 (221)
Q Consensus 188 ------~~~~~~~~~~~-~f~v-~~v~~~~ 209 (221)
++..-.+.+++ +|++ +.+.-+.
T Consensus 186 t~~p~~vf~~e~~~L~~~~~~~~e~i~LeP 215 (229)
T PF01269_consen 186 TADPEEVFAEEVKKLKEEGFKPLEQITLEP 215 (229)
T ss_dssp SSSHHHHHHHHHHHHHCTTCEEEEEEE-TT
T ss_pred cCCHHHHHHHHHHHHHHcCCChheEeccCC
Confidence 23444445554 7888 4444333
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00026 Score=58.45 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=81.5
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhh------cc----------------------
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTS------RI---------------------- 112 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~------~~---------------------- 112 (221)
...+.+||=-|||.|.++..+|++|..|.+.|.+. |+= ..|.-.|.. .+
T Consensus 54 ~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll--~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i 131 (270)
T PF07942_consen 54 DRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLL--ASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI 131 (270)
T ss_pred CCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHH--HHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence 44567999999999999999999999999999865 532 223333321 11
Q ss_pred ccCCCCC--CCCCceEEEEEEecCCCCccccCCCccEEEEcccccC---CcCHHHHHHHHHHhcCCCeEEEEEEEe----
Q 027594 113 SQMNPGS--DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYEI---- 183 (221)
Q Consensus 113 ~~~~~~~--~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~---~~~~~~l~~~~~~ll~~~g~~~i~~~~---- 183 (221)
.+..|.+ ....++.....|+..........++||.|+.+ |. ...+-..+++|.++|||||..+=..+.
T Consensus 132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~---FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC---FFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHF 208 (270)
T ss_pred CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE---EEeechHHHHHHHHHHHHHhccCCEEEecCCccccC
Confidence 0111111 12334444443333322221124799999987 43 344667888899999999954422221
Q ss_pred cCh---------hHHHHHHHHHh-cCCeEEE
Q 027594 184 RST---------SVHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 184 r~~---------~~~~~~~~~~~-~~f~v~~ 204 (221)
... -..+.+....+ .+|++..
T Consensus 209 ~~~~~~~~~sveLs~eEi~~l~~~~GF~~~~ 239 (270)
T PF07942_consen 209 EPMSIPNEMSVELSLEEIKELIEKLGFEIEK 239 (270)
T ss_pred CCCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence 111 01455555554 4888753
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0003 Score=55.50 Aligned_cols=131 Identities=20% Similarity=0.222 Sum_probs=81.3
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecchhhHHHHHHHHHHhhhccccCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQIEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
++..|.+...++ .-..++.+|+||||-.|-.+-++++. ++ +|+++|+.++-.
T Consensus 29 Aa~KL~el~~k~-------~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~------------------ 83 (205)
T COG0293 29 AAYKLLELNEKF-------KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP------------------ 83 (205)
T ss_pred HHHHHHHHHHhc-------CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc------------------
Confidence 455555544444 22346789999999999999999876 43 399999633110
Q ss_pred CCCCCCceEEEEEEecCCCCcc-----ccCCCccEEEEcccccCC------------cCHHHHHHHHHHhcCCCeEEEEE
Q 027594 118 GSDLLGSIQAVELDWGNEDHIK-----AVAPPFDYIIGTDVVYAE------------HLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~-----~~~~~fD~Vi~~d~~y~~------------~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
...|.+.+.|..+..... ....++|+|++ |+.-+. ......+......|+|+|.+++-
T Consensus 84 ----~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s-D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K 158 (205)
T COG0293 84 ----IPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS-DMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAK 158 (205)
T ss_pred ----CCCceEEeeeccCccHHHHHHHHcCCCCcceEEe-cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEE
Confidence 234788888877665432 22345799985 443321 12233444555678999998764
Q ss_pred EEecChhHHHHHHHHHhcCCeEE
Q 027594 181 YEIRSTSVHEQMLQMWKSNFNVK 203 (221)
Q Consensus 181 ~~~r~~~~~~~~~~~~~~~f~v~ 203 (221)
.-... ..+.++..+++.|+.-
T Consensus 159 ~fqg~--~~~~~l~~~~~~F~~v 179 (205)
T COG0293 159 VFQGE--DFEDLLKALRRLFRKV 179 (205)
T ss_pred EEeCC--CHHHHHHHHHHhhcee
Confidence 43322 2467778888777553
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.3e-05 Score=64.16 Aligned_cols=147 Identities=16% Similarity=0.251 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhh-cc-------ccCCCCCC--------C
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTS-RI-------SQMNPGSD--------L 121 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~-~~-------~~~~~~~~--------~ 121 (221)
+...+|.++||+|||+-+..+..|..- .+|+++|+ +...+.+++=++.-+. .+ +....... .
T Consensus 52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l 131 (256)
T PF01234_consen 52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL 131 (256)
T ss_dssp TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence 567788999999999977655555444 46999998 5466655543332111 11 00011000 0
Q ss_pred CCceE-EEEEEecCCCCccc---cCCCccEEEEccccc----CCcCHHHHHHHHHHhcCCCeEEEEEEEecCh-------
Q 027594 122 LGSIQ-AVELDWGNEDHIKA---VAPPFDYIIGTDVVY----AEHLLEPLLQTIFALSGPKTTILLGYEIRST------- 186 (221)
Q Consensus 122 ~~~v~-~~~~dw~~~~~~~~---~~~~fD~Vi~~d~~y----~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------- 186 (221)
...|+ +...|......+.. .+++||+|+++-|+- ..+.....++.+.++|||||.++++......
T Consensus 132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~ 211 (256)
T PF01234_consen 132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGH 211 (256)
T ss_dssp HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE
T ss_pred HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE
Confidence 11233 44555544443322 133599999987664 3456777888888999999999987643321
Q ss_pred -----hHHHHHH-HHHh-cCCeEEEec
Q 027594 187 -----SVHEQML-QMWK-SNFNVKLVP 206 (221)
Q Consensus 187 -----~~~~~~~-~~~~-~~f~v~~v~ 206 (221)
.+.+.+. +.++ .+|.+....
T Consensus 212 ~F~~l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 212 KFPCLPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred ecccccCCHHHHHHHHHHcCCEEEecc
Confidence 1223443 4444 589988776
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.5e-05 Score=61.89 Aligned_cols=49 Identities=29% Similarity=0.195 Sum_probs=36.5
Q ss_pred chHHHHHHHHhhcccCCCCCC-CCC-CCCeEEEeCCCccHHHHHHHHhC---CEEEEecch
Q 027594 40 DASVVFVKYLEKNCRKGRFCP-SKL-KGKRVIELGAGCGVAGFGMALLG---CNVITTDQI 95 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~-~~~-~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~~ 95 (221)
+++..|.+.+.+. . ... ++.+||||||++|-.+-++.+.+ .+|+++|..
T Consensus 4 Ra~~KL~ei~~~~-------~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~ 57 (181)
T PF01728_consen 4 RAAFKLYEIDEKF-------KIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLG 57 (181)
T ss_dssp THHHHHHHHHHTT-------SSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESS
T ss_pred HHHHHHHHHHHHC-------CCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecc
Confidence 4667777777655 2 112 45899999999999999999887 579999974
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=59.42 Aligned_cols=85 Identities=18% Similarity=0.209 Sum_probs=55.6
Q ss_pred eEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCc
Q 027594 67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~f 145 (221)
+|||+-+|+|..|+.++.+|++|+++|. +.+...++.|++..... ..... ....++++...|-.... ......|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~-~~~~~--~~~~ri~l~~~da~~~L--~~~~~~f 165 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYAD-AEIGG--WLQERLQLIHASSLTAL--TDITPRP 165 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhc-cccch--hhhceEEEEeCcHHHHH--hhCCCCC
Confidence 8999999999999999999999999997 56888889998874210 00000 00134555553322221 1123479
Q ss_pred cEEEEcccccC
Q 027594 146 DYIIGTDVVYA 156 (221)
Q Consensus 146 D~Vi~~d~~y~ 156 (221)
|+|+..+++-+
T Consensus 166 DVVYlDPMfp~ 176 (250)
T PRK10742 166 QVVYLDPMFPH 176 (250)
T ss_pred cEEEECCCCCC
Confidence 99997554433
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0002 Score=58.55 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=81.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.++||=||-|.|...-.+.+.. .+|+++|+ +.+++.+++-+....... ..+++++...|-... +..
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~--------~d~r~~i~~~Dg~~~--l~~ 145 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGL--------DDPRVRIIIGDGRKF--LKE 145 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTG--------GSTTEEEEESTHHHH--HHT
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcccc--------CCCceEEEEhhhHHH--HHh
Confidence 56899999999999988888765 57999998 568999988666543210 135777766322111 112
Q ss_pred cCC-CccEEEEc--ccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEecC--hhHHHHHHHHHhcCCe
Q 027594 141 VAP-PFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKSNFN 201 (221)
Q Consensus 141 ~~~-~fD~Vi~~--d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r~--~~~~~~~~~~~~~~f~ 201 (221)
..+ +||+|+.. |+..... .-..+++.+.++|+|+|.+++-..... ........+.++..|.
T Consensus 146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~ 213 (246)
T PF01564_consen 146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP 213 (246)
T ss_dssp SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence 234 89999973 2111111 246889999999999999877543322 2334445556666654
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.79 E-value=7.3e-05 Score=61.74 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
..-+++.+.+.+ ...++..|||+|+|+|.++..++..+.+|+++|. ++..+.+++....
T Consensus 15 ~~~~~~~Iv~~~-------~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~------------- 74 (262)
T PF00398_consen 15 DPNIADKIVDAL-------DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS------------- 74 (262)
T ss_dssp HHHHHHHHHHHH-------TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT-------------
T ss_pred CHHHHHHHHHhc-------CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh-------------
Confidence 344555555553 2337889999999999999999999999999998 5588888775542
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCC
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGP 173 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~ 173 (221)
.++++++..|................|++|-+++. -.+++..+...-+.
T Consensus 75 -~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~i---s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 75 -NPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYNI---SSPILRKLLELYRF 123 (262)
T ss_dssp -CSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGTG---HHHHHHHHHHHGGG
T ss_pred -cccceeeecchhccccHHhhcCCceEEEEEecccc---hHHHHHHHhhcccc
Confidence 35788888665544322212345678888866432 23455555443333
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0001 Score=53.38 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=45.4
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhh
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
..++++++|+|+|++.|--+|.++..||+ |++.+. +...+..+.|++.|.+
T Consensus 24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 24 MLNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred heeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 35679999999999999999999999996 999997 5588999999998865
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0011 Score=48.25 Aligned_cols=103 Identities=24% Similarity=0.306 Sum_probs=64.0
Q ss_pred EEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC-
Q 027594 68 VIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA- 142 (221)
Q Consensus 68 vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~- 142 (221)
++|+|||+|... .++... ..++++|. +.++...+..... .. ...+.+...++... ..+...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~-~~~~~~~ 117 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG-----------LGLVDFVVADALGG-VLPFEDS 117 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC-----------CCceEEEEeccccC-CCCCCCC
Confidence 999999999877 444443 37888997 4466664433322 11 01145555444331 122223
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
..||++......+... ...++..+.+.++|+|.+++......
T Consensus 118 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 118 ASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred CceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4799994444444444 88899999999999999888766543
|
|
| >KOG2497 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=3e-05 Score=63.62 Aligned_cols=134 Identities=22% Similarity=0.173 Sum_probs=81.3
Q ss_pred EEEEeeCCC----CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hh
Q 027594 22 QLQFSQDPN----SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IE 96 (221)
Q Consensus 22 ~~~i~~~~~----~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~ 96 (221)
...+.|... ...+|..+|++++.|++++.++ +....++++.++|||.++....+++..--|...|. ..
T Consensus 51 ~~v~~~~~~~~~~~~~tg~~~w~~al~L~~~l~~~-------~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~ 123 (262)
T KOG2497|consen 51 TKVILQSHSLRFLLARTGLSVWESALSLEADLRDK-------PDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRC 123 (262)
T ss_pred CeeeecchHHHHHHHHhccccchHHHHHHHHHhhC-------cccccccchHhhccCHHHHHHHHHhcccceecCCccCc
Confidence 344555543 3568999999999999999988 45578899999999999998666665544444443 22
Q ss_pred hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc-cCCCccEEEEcccccCCcCHHHHHHHHHHhc
Q 027594 97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALS 171 (221)
Q Consensus 97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~-~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll 171 (221)
+.-+...+...+..... ...-+.-..+|......+. ....+|+|+++|++|. ....+++.....+|
T Consensus 124 ~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL 190 (262)
T KOG2497|consen 124 AGLLLEEIILLSRDLSL--------EVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL 190 (262)
T ss_pred HHHHHHHHHhccccccc--------cccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence 33333333332221100 0111111222222111110 1234899999999999 77888888887764
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00034 Score=55.33 Aligned_cols=104 Identities=18% Similarity=0.119 Sum_probs=76.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+|.+||++|=|.|++.-.+..... +-+.++. +++++.++.+.-.. ..+|.+....|.+.... .
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------------k~nViil~g~WeDvl~~-L 165 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------------KENVIILEGRWEDVLNT-L 165 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------------ccceEEEecchHhhhcc-c
Confidence 3688999999999998888876654 3556664 78998888764332 36788999999877543 3
Q ss_pred cCCCccEEEEcccc-cCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGTDVV-YAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~-y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
+++.||-|+- |.+ -..+++..+-+.+.++|||+|++-.+.
T Consensus 166 ~d~~FDGI~y-DTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 166 PDKHFDGIYY-DTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred cccCcceeEe-echhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 4677999874 443 234667788889999999999865543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00076 Score=55.87 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=62.5
Q ss_pred CCeEEEeCCCc-cHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHH-HhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 65 GKRVIELGAGC-GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 65 ~~~vLelGcG~-G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++|+=||||. -+.++.+++. ++.|+.+|+ +++++.+++-+. ..++ ..++++...|-.+.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----------~~~m~f~~~d~~~~--- 186 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----------SKRMSFITADVLDV--- 186 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------------SSEEEEES-GGGG---
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----------cCCeEEEecchhcc---
Confidence 35999999997 8888988854 457999998 669999988777 4454 46788887554332
Q ss_pred cccCCCccEEEEcccccC-CcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~-~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
......||+|+.+-.+.. ...-..++..+.+.++||..+++=
T Consensus 187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 222468999988877763 567889999999999999988773
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=4.1e-05 Score=60.59 Aligned_cols=85 Identities=18% Similarity=0.122 Sum_probs=68.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-cccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~~ 141 (221)
.-..|+|--||.|--.+..|..|+.|+++|+ +.-+..++.|++--|+ .++|++++.||-+... ++..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI-----------~~rItFI~GD~ld~~~~lq~~ 162 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV-----------PDRITFICGDFLDLASKLKAD 162 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC-----------CceeEEEechHHHHHHHHhhh
Confidence 3458999999999999999999999999998 5689999999999887 5699999999977643 2233
Q ss_pred CCCccEEEEcccccCCcC
Q 027594 142 APPFDYIIGTDVVYAEHL 159 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~ 159 (221)
...+|.|+.+++.-.++.
T Consensus 163 K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 163 KIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred hheeeeeecCCCCCCcch
Confidence 345789998887654443
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00016 Score=60.50 Aligned_cols=45 Identities=11% Similarity=0.002 Sum_probs=38.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHH
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~ 107 (221)
.++..+||.+||.|-.+..+++.. .+|+++|. +++++.+++++..
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~ 66 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP 66 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence 356799999999999999998763 57999997 6799999887654
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=2.8e-05 Score=61.06 Aligned_cols=94 Identities=20% Similarity=0.263 Sum_probs=70.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
+.+++||||+|-|-++..++..-.+|++|+.+. |...+++. +. +| ....+|... +
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk----~y-------------nV-l~~~ew~~t------~ 167 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK----NY-------------NV-LTEIEWLQT------D 167 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc----CC-------------ce-eeehhhhhc------C
Confidence 457999999999999999888777899999765 66655531 11 11 123456443 3
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCC-CeEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGP-KTTILLGY 181 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~-~g~~~i~~ 181 (221)
-+||+|.+-.++=...+.-.|++.+..+++| +|+++++.
T Consensus 168 ~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred ceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 4799999888877777778899999999998 88888764
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.003 Score=50.16 Aligned_cols=133 Identities=18% Similarity=0.160 Sum_probs=81.5
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecchhhHHHHHHHHHHhhhccccCCCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQIEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
+++.++.+||....... .......++||+||=+.-..+. ..+ -+|+.+|...
T Consensus 30 dSSK~lv~wL~~~~~~~---~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns---------------------- 82 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRP---KNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS---------------------- 82 (219)
T ss_pred chhHHHHHHhhhhcccc---ccccccceEEeecccCCCCccc--ccCceeeEEeecCC----------------------
Confidence 37999999998763211 0111236999999864322221 222 2599999621
Q ss_pred CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc---CHHHHHHHHHHhcCCCeE-----EEEEEEe------c
Q 027594 119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---LLEPLLQTIFALSGPKTT-----ILLGYEI------R 184 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~---~~~~l~~~~~~ll~~~g~-----~~i~~~~------r 184 (221)
....+.+.|+-+........++||+|.+|=++-..+ ..-..+..+.++|+|+|. ++++.+. |
T Consensus 83 ----~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSR 158 (219)
T PF11968_consen 83 ----QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSR 158 (219)
T ss_pred ----CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhccc
Confidence 112344555555433233467999999998876644 345678888889999999 8887764 2
Q ss_pred ChhHHHHHHHHHhc-CCeEEE
Q 027594 185 STSVHEQMLQMWKS-NFNVKL 204 (221)
Q Consensus 185 ~~~~~~~~~~~~~~-~f~v~~ 204 (221)
+. ..+.|.+.+.. +|....
T Consensus 159 y~-~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 159 YM-TEERLREIMESLGFTRVK 178 (219)
T ss_pred cc-CHHHHHHHHHhCCcEEEE
Confidence 22 23556666543 776643
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0013 Score=54.77 Aligned_cols=105 Identities=13% Similarity=0.043 Sum_probs=70.3
Q ss_pred CeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++||-||-|.|...-.+.+.. .+++++|+ +.+++.+++=+..-... ...+++.+...|=... +....
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~--------~~dpRv~i~i~Dg~~~--v~~~~ 147 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG--------ADDPRVEIIIDDGVEF--LRDCE 147 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc--------cCCCceEEEeccHHHH--HHhCC
Confidence 699999999999999999886 47999998 56899988755543210 0025666655332211 12223
Q ss_pred CCccEEEEccccc-CCc---CHHHHHHHHHHhcCCCeEEEEE
Q 027594 143 PPFDYIIGTDVVY-AEH---LLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 143 ~~fD~Vi~~d~~y-~~~---~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.+||+||..-.=. .+. .-..+.+.++++|+++|.+..-
T Consensus 148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4899999742111 110 1367999999999999997653
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.011 Score=48.60 Aligned_cols=104 Identities=12% Similarity=-0.000 Sum_probs=67.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||-|+|+|-+|.++++.- .+++-.|+.+ -.+.+++-.+..+. .+++++..-|....-
T Consensus 102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----------~~~vt~~hrDVc~~G 170 (314)
T KOG2915|consen 102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----------GDNVTVTHRDVCGSG 170 (314)
T ss_pred cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----------CcceEEEEeecccCC
Confidence 34589999999999999999999864 3588888743 45555566666665 578898887775543
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
... ....+|.|+..-+ --+. .+..+..+|+.+|.-+++.
T Consensus 171 F~~-ks~~aDaVFLDlP-aPw~----AiPha~~~lk~~g~r~csF 209 (314)
T KOG2915|consen 171 FLI-KSLKADAVFLDLP-APWE----AIPHAAKILKDEGGRLCSF 209 (314)
T ss_pred ccc-cccccceEEEcCC-Chhh----hhhhhHHHhhhcCceEEec
Confidence 321 1457888886422 2222 2333344677666544444
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00074 Score=50.38 Aligned_cols=47 Identities=17% Similarity=0.186 Sum_probs=37.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHH------hCCEEEEecc-hhhHHHHHHHHHHhh
Q 027594 63 LKGKRVIELGAGCGVAGFGMAL------LGCNVITTDQ-IEVLPLLKRNVEWNT 109 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~------~ga~v~~~D~-~~~l~~~~~n~~~n~ 109 (221)
.+..+|+|+|||-|.+|..++. .+.+|+++|. +..++.+.+..+...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 4567999999999999999998 3568999997 557777777666544
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0019 Score=53.75 Aligned_cols=105 Identities=19% Similarity=0.252 Sum_probs=58.7
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+..++|||+|||+|....++... + .+++++|. +.|++.++.-++. .. ... ...|....
T Consensus 30 p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~-~~-------------~~~--~~~~~~~~ 93 (274)
T PF09243_consen 30 PDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA-GP-------------NNR--NAEWRRVL 93 (274)
T ss_pred cCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc-cc-------------ccc--cchhhhhh
Confidence 3567789999999999766555432 2 35999997 4588877764432 21 000 00111110
Q ss_pred C-ccccCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 137 H-IKAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 137 ~-~~~~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
. ......+.|+|+++.++-.... ...+++.+...+++ .++++.+.
T Consensus 94 ~~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 94 YRDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hcccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 0 0011223499999988876444 34455555444544 55555443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.023 Score=44.80 Aligned_cols=149 Identities=16% Similarity=0.182 Sum_probs=86.0
Q ss_pred ceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hC-CEEEEecc-hhhH-HHHHHHHHHhhh
Q 027594 36 TTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LG-CNVITTDQ-IEVL-PLLKRNVEWNTS 110 (221)
Q Consensus 36 ~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~-~g-a~v~~~D~-~~~l-~~~~~n~~~n~~ 110 (221)
.+.|+.-. .||..+..-+. .....+|.+||=||+-+|...--.+. .| ..+++++. +.+. +++.-.-+++
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~----~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~-- 124 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLK----NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRP-- 124 (231)
T ss_pred eeeeCcchhHHHHHHHcCcc----cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCC--
Confidence 57887622 34444443321 12456889999999999976555554 34 35999997 4433 3332222222
Q ss_pred ccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh---
Q 027594 111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS--- 187 (221)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~--- 187 (221)
|+..+..|-..+..-...-++.|+|+. |+ -.++..+-+.......|+++|.++++.+.|+-+
T Consensus 125 -------------Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-DV-AQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~ 189 (231)
T COG1889 125 -------------NIIPILEDARKPEKYRHLVEKVDVIYQ-DV-AQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTA 189 (231)
T ss_pred -------------CceeeecccCCcHHhhhhcccccEEEE-ec-CCchHHHHHHHHHHHhcccCCeEEEEEEeecccccC
Confidence 334444333322211122345677664 33 234567778888899999999999999988732
Q ss_pred ----HHHHHHHHHh-cCCeEEEe
Q 027594 188 ----VHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 188 ----~~~~~~~~~~-~~f~v~~v 205 (221)
+++.-.+.++ .+|++.++
T Consensus 190 dp~~vf~~ev~kL~~~~f~i~e~ 212 (231)
T COG1889 190 DPEEVFKDEVEKLEEGGFEILEV 212 (231)
T ss_pred CHHHHHHHHHHHHHhcCceeeEE
Confidence 3443334443 47877443
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0021 Score=54.46 Aligned_cols=107 Identities=15% Similarity=0.174 Sum_probs=67.2
Q ss_pred CCCeEEEeCCCccHH-HHHHHHh-----CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEE--EEEEecC
Q 027594 64 KGKRVIELGAGCGVA-GFGMALL-----GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA--VELDWGN 134 (221)
Q Consensus 64 ~~~~vLelGcG~G~~-~l~~a~~-----ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~--~~~dw~~ 134 (221)
++..++|||||.|.= .+.+..+ ..+++.+|++ ++++.+..++..... +.+.+ +..|..+
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~------------p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF------------SHVRCAGLLGTYDD 143 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC------------CCeEEEEEEecHHH
Confidence 456899999999963 3333222 3568999995 589888888873221 33444 4444433
Q ss_pred CCC-ccc--cCCCccEEEE-cccccC--CcCHHHHHHHHHH-hcCCCeEEEEEEE
Q 027594 135 EDH-IKA--VAPPFDYIIG-TDVVYA--EHLLEPLLQTIFA-LSGPKTTILLGYE 182 (221)
Q Consensus 135 ~~~-~~~--~~~~fD~Vi~-~d~~y~--~~~~~~l~~~~~~-ll~~~g~~~i~~~ 182 (221)
... ++. ......+++. ...+.+ +.....+++.+++ .|+|++.+++..-
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 221 111 1223455543 345555 5567789999999 9999999998654
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0021 Score=53.70 Aligned_cols=146 Identities=21% Similarity=0.239 Sum_probs=91.5
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhcc
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (221)
.+++.+-.++..+.. ..++.+|||+.|+.|-=+..+|.+ + ..|++.|. ..-+..++.|+.+.+.
T Consensus 68 ~vQd~sS~l~~~~L~----------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-- 135 (283)
T PF01189_consen 68 YVQDESSQLVALALD----------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-- 135 (283)
T ss_dssp EEHHHHHHHHHHHHT----------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---
T ss_pred Eeccccccccccccc----------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--
Confidence 466666666665553 237788999999999877777754 3 47999998 5688999999998775
Q ss_pred ccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEccccc------CC---------c-------CHHHHHHHHHHh
Q 027594 113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY------AE---------H-------LLEPLLQTIFAL 170 (221)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y------~~---------~-------~~~~l~~~~~~l 170 (221)
.++.+...|-..... ......||.|+...+-- .. . .-..+++...++
T Consensus 136 ----------~~v~~~~~D~~~~~~-~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 204 (283)
T PF01189_consen 136 ----------FNVIVINADARKLDP-KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL 204 (283)
T ss_dssp ----------SSEEEEESHHHHHHH-HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC
T ss_pred ----------ceEEEEeeccccccc-cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh
Confidence 456655522222111 11234699998854321 11 1 134477778888
Q ss_pred c----CCCeEEEEEEEe----cChhHHHHHHHHHhcCCeEEEec
Q 027594 171 S----GPKTTILLGYEI----RSTSVHEQMLQMWKSNFNVKLVP 206 (221)
Q Consensus 171 l----~~~g~~~i~~~~----r~~~~~~~~~~~~~~~f~v~~v~ 206 (221)
+ +|||+++.+... -+..+.+.|++.. ..|++..+.
T Consensus 205 ~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~-~~~~l~~~~ 247 (283)
T PF01189_consen 205 LNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH-PDFELVPIP 247 (283)
T ss_dssp EHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS-TSEEEECCE
T ss_pred hcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC-CCcEEEecc
Confidence 9 999998776643 2233455555532 245555444
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.018 Score=45.83 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=74.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+.++.|+||=-|.+++++.+.+. .+++.|. +-.++.+.+|+..+++ .+++++..+ +....-.
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----------~~~i~vr~~---dgl~~l~ 81 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----------SERIDVRLG---DGLAVLE 81 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----------cceEEEecc---CCccccC
Confidence 345699999999999999987754 5899998 4599999999999987 466777663 3322222
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHH
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM 195 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~ 195 (221)
.+..+|+|+-+.+ .-..+..++..-..-++.--++++ .+..+....+.|+..
T Consensus 82 ~~d~~d~ivIAGM--GG~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~LR~~L~~ 133 (226)
T COG2384 82 LEDEIDVIVIAGM--GGTLIREILEEGKEKLKGVERLIL-QPNIHTYELREWLSA 133 (226)
T ss_pred ccCCcCEEEEeCC--cHHHHHHHHHHhhhhhcCcceEEE-CCCCCHHHHHHHHHh
Confidence 3457898876643 122344444444444543334433 565555555666543
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0064 Score=50.03 Aligned_cols=130 Identities=17% Similarity=0.161 Sum_probs=87.0
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++..|+.|+=+| ---+.|++++..|. +|..+|+++ .+....+-+++-+. +++.....|..++.
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------------~~ie~~~~Dlr~pl 214 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------------NNIEAFVFDLRNPL 214 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------------cchhheeehhcccC
Confidence 4788999999999 56788888887654 699999976 88999988888775 56777777776654
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCC-C--eEEEEEEEecChhHHHHHHHHH-h-cCCeEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGP-K--TTILLGYEIRSTSVHEQMLQMW-K-SNFNVKL 204 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~-~--g~~~i~~~~r~~~~~~~~~~~~-~-~~f~v~~ 204 (221)
... ..++||+.+. ||.+-...+..++..=-..|+. | |++.+.....+-.-+..+...+ . -+|.++.
T Consensus 215 pe~-~~~kFDvfiT-DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~lIn~~gvVITd 285 (354)
T COG1568 215 PED-LKRKFDVFIT-DPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRILINEMGVVITD 285 (354)
T ss_pred hHH-HHhhCCeeec-CchhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHHHHhcCeeeHh
Confidence 322 3578999886 5556666677777665556664 3 5666655443333344444433 2 2555543
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0028 Score=54.66 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHH-HHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLK-RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~-~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.+++|+|||.|-+....+..+ +.+++.|. +.-+.... .++.. .+ ..+..++..+. ...
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~-~l-----------~~k~~~~~~~~---~~~ 172 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKA-YL-----------DNKCNFVVADF---GKM 172 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHH-Hh-----------hhhcceehhhh---hcC
Confidence 3456689999999999999998765 67999987 33222222 22221 11 11222222222 222
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
+..++.||.+-+.+...+......++.++.+.++|||.+..
T Consensus 173 ~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~ 213 (364)
T KOG1269|consen 173 PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV 213 (364)
T ss_pred CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence 34578999999999999999999999999999999999765
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.002 Score=51.63 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=52.0
Q ss_pred CCCeEEEeCCCcc-HHHHHH-HHhCCEEEEecch-hhHHHHHHHHHHh-hhccccCCCCCCCCCceEEEEEEecCCC-C-
Q 027594 64 KGKRVIELGAGCG-VAGFGM-ALLGCNVITTDQI-EVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNED-H- 137 (221)
Q Consensus 64 ~~~~vLelGcG~G-~~~l~~-a~~ga~v~~~D~~-~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~~dw~~~~-~- 137 (221)
++.+.||||.|.- +..+.- -..|-+.|++|++ .+++.|+.++..| ++ ...++... .... .
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l-----------~~~I~lr~---qk~~~~i 143 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL-----------ERAIRLRR---QKDSDAI 143 (292)
T ss_pred CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch-----------hhheeEEe---ccCcccc
Confidence 5668999988753 222222 2347789999985 5999999999998 44 23344432 1111 1
Q ss_pred ---ccccCCCccEEEEcccccC
Q 027594 138 ---IKAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 138 ---~~~~~~~fD~Vi~~d~~y~ 156 (221)
.-..++.||..++|+++|.
T Consensus 144 f~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 144 FNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred ccccccccceeeeEecCCCcch
Confidence 1123678999999999885
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00013 Score=51.47 Aligned_cols=98 Identities=12% Similarity=0.049 Sum_probs=36.5
Q ss_pred EEeCCCccHHHHHHHHh---C--CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 69 IELGAGCGVAGFGMALL---G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 69 LelGcG~G~~~l~~a~~---g--a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
||+|+..|..++.+++. . .+++++|.....+..+++++..+. .+++++...+-.+... .....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~-----------~~~~~~~~g~s~~~l~-~~~~~ 68 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL-----------SDRVEFIQGDSPDFLP-SLPDG 68 (106)
T ss_dssp --------------------------EEEESS------------GGG------------BTEEEEES-THHHHH-HHHH-
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC-----------CCeEEEEEcCcHHHHH-HcCCC
Confidence 79999999888776642 2 369999963323344444444443 3467777633221110 11246
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
+||+|+.. .-+..+....-+..+...|+|||.+++
T Consensus 69 ~~dli~iD-g~H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 69 PIDLIFID-GDHSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp -EEEEEEE-S---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CEEEEEEC-CCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 89999864 434445566677777888999998765
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0024 Score=55.40 Aligned_cols=103 Identities=24% Similarity=0.200 Sum_probs=71.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+.+|||-=||||+=|+-.++. + .+|++-|+ +++++.+++|++.|++. .+.+.+...|-.... .
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~----------~~~~~v~~~DAn~ll--~ 116 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE----------DERIEVSNMDANVLL--Y 116 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----------GCCEEEEES-HHHHH--C
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----------CceEEEehhhHHHHh--h
Confidence 3458999999999999999876 3 36999998 66999999999999972 124666553332211 1
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.....||+|=. |++ .+..++++...+.++.||.+.++..
T Consensus 117 ~~~~~fD~IDl-DPf---GSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 117 SRQERFDVIDL-DPF---GSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp HSTT-EEEEEE---S---S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred hccccCCEEEe-CCC---CCccHhHHHHHHHhhcCCEEEEecc
Confidence 24678999954 443 3356899999999999999998764
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0026 Score=55.11 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=54.7
Q ss_pred CcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhh
Q 027594 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
+.+|..-|.+-+..-+--.+ .-...|..|-|+.||.|..++.+++.++.|++-|. +++++.++.|+..|.+
T Consensus 225 ~DfskVYWnsRL~~Eherls--------g~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv 296 (495)
T KOG2078|consen 225 FDFSKVYWNSRLSHEHERLS--------GLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV 296 (495)
T ss_pred EecceEEeeccchhHHHHHh--------hccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence 45677789943322221111 11235678999999999999999999999999996 8899999999999987
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.039 Score=44.65 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=75.0
Q ss_pred EEEEcCeEEEEeeCCCCCcccceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHH-HhCCE--EE
Q 027594 15 NLEVLGHQLQFSQDPNSKHLGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCN--VI 90 (221)
Q Consensus 15 ~~~~~~~~~~i~~~~~~~~~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a-~~ga~--v~ 90 (221)
.-.+.+.+=...+.+ ....-.++|..-. .||.-|.--.. +.+..+|.+||=||+++|..---.+ -.|.+ |+
T Consensus 111 ge~vYgEkRisv~~~-~~kvEyRVWnPfrSKLAA~I~gGvd----nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VY 185 (317)
T KOG1596|consen 111 GESVYGEKRISVENE-DGKVEYRVWNPFRSKLAAGILGGVD----NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVY 185 (317)
T ss_pred cccccCceEEEeecC-CCcEEEEEeChHHHHHHHHhhcCcc----ceeecCCceEEEeeccCCceeehhhcccCCCceEE
Confidence 334455443344444 3367789998632 34444432111 1356789999999999996433333 34554 88
Q ss_pred Eecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHH
Q 027594 91 TTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA 169 (221)
Q Consensus 91 ~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ 169 (221)
+++.+. +=..+ -|++... .||..+.-|-..+..-...-.-.|+|++ |+- .++....+.-..+.
T Consensus 186 AVEfs~rsGRdL-~nmAkkR-------------tNiiPIiEDArhP~KYRmlVgmVDvIFa-Dva-qpdq~RivaLNA~~ 249 (317)
T KOG1596|consen 186 AVEFSHRSGRDL-INMAKKR-------------TNIIPIIEDARHPAKYRMLVGMVDVIFA-DVA-QPDQARIVALNAQY 249 (317)
T ss_pred EEEecccchHHH-HHHhhcc-------------CCceeeeccCCCchheeeeeeeEEEEec-cCC-Cchhhhhhhhhhhh
Confidence 888643 21111 1222111 2333322111111100111223455553 332 23445555566677
Q ss_pred hcCCCeEEEEEEEec
Q 027594 170 LSGPKTTILLGYEIR 184 (221)
Q Consensus 170 ll~~~g~~~i~~~~r 184 (221)
.|+++|.++++.+..
T Consensus 250 FLk~gGhfvisikan 264 (317)
T KOG1596|consen 250 FLKNGGHFVISIKAN 264 (317)
T ss_pred hhccCCeEEEEEecc
Confidence 899999999877643
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.016 Score=43.06 Aligned_cols=104 Identities=18% Similarity=0.095 Sum_probs=61.2
Q ss_pred EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC-CCccEEEEcccccCCc-------
Q 027594 88 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA-PPFDYIIGTDVVYAEH------- 158 (221)
Q Consensus 88 ~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~-~~fD~Vi~~d~~y~~~------- 158 (221)
+|++.|+ +++++.+++.++.++. .+++++..-....... ... .++|.++.|=- |-+.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----------~~~v~li~~sHe~l~~--~i~~~~v~~~iFNLG-YLPggDk~i~T 66 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----------EDRVTLILDSHENLDE--YIPEGPVDAAIFNLG-YLPGGDKSITT 66 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------------GSGEEEEES-GGGGGG--T--S--EEEEEEEES-B-CTS-TTSB-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----------CCcEEEEECCHHHHHh--hCccCCcCEEEEECC-cCCCCCCCCCc
Confidence 5899997 7799999999999876 3578877643333222 123 48999987633 3221
Q ss_pred ---CHHHHHHHHHHhcCCCeEEEEEEEecChh------HHHHHHHHHh-cCCeEEEe
Q 027594 159 ---LLEPLLQTIFALSGPKTTILLGYEIRSTS------VHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 159 ---~~~~l~~~~~~ll~~~g~~~i~~~~r~~~------~~~~~~~~~~-~~f~v~~v 205 (221)
.--..++.+.++|+|||.+.++....++. ....|++.+. +.|.|...
T Consensus 67 ~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~ 123 (140)
T PF06962_consen 67 KPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKY 123 (140)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred CcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEE
Confidence 12234555566789999988776655542 2344554443 47877544
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.076 Score=45.60 Aligned_cols=109 Identities=16% Similarity=0.072 Sum_probs=71.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.-.+||-||-|-|+..-.+.+.- .+|+.+|. |.|++.+++|...-.. |.++-..+++++..-|-... ...
T Consensus 289 ~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~-----N~~sf~dpRv~Vv~dDAf~w--lr~ 361 (508)
T COG4262 289 GARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRAL-----NQGSFSDPRVTVVNDDAFQW--LRT 361 (508)
T ss_pred ccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhh-----ccCCccCCeeEEEeccHHHH--HHh
Confidence 34689999999999988888763 36999997 7799999977665433 22222345777766322111 122
Q ss_pred cCCCccEEEEcccccCCcC-----HHHHHHHHHHhcCCCeEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHL-----LEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~-----~~~l~~~~~~ll~~~g~~~i 179 (221)
....||.||..-+=-.... -.++-..+.+.|+++|.+++
T Consensus 362 a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 362 AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 3468999997522111222 24566677888999999876
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0058 Score=50.84 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=33.9
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027594 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE 106 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~ 106 (221)
+|+||.||.|..++.+...|.+ |.++|. +.+++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence 7999999999999999999998 677998 558888877753
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0064 Score=51.68 Aligned_cols=107 Identities=14% Similarity=0.233 Sum_probs=64.9
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++..+++||+|.|.|....++-..-. +++.++.+.++...-..++.|.. ....+|.....
T Consensus 110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~----------------t~~td~r~s~v 173 (484)
T COG5459 110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS----------------TEKTDWRASDV 173 (484)
T ss_pred CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc----------------cccCCCCCCcc
Confidence 567778999999999865544433322 35666655556555556665542 22244443321
Q ss_pred c----c-ccCCCccEEEEcccccCCcC---HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 138 I----K-AVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 138 ~----~-~~~~~fD~Vi~~d~~y~~~~---~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
. + .....|++++..+=+-.... +...++.+..++.|||.++|+...
T Consensus 174 t~dRl~lp~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 174 TEDRLSLPAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred chhccCCCccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 1 1 12356888888776665443 334666667778999999887654
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0058 Score=51.73 Aligned_cols=81 Identities=22% Similarity=0.142 Sum_probs=56.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHH-------HHHHHHHHhhhccccCCCCCCCCCceEEEEEEec
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLP-------LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~ 133 (221)
..+|+-|.|=-.|||-+-+.+|..|+-|+++|++. ++. .++.|.++-+. ...-+.+...|..
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~----------~~~fldvl~~D~s 275 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGS----------SSQFLDVLTADFS 275 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCC----------cchhhheeeeccc
Confidence 34789999999999999999999999999999865 554 34455555442 1223455565655
Q ss_pred CCCCccccCCCccEEEEcccc
Q 027594 134 NEDHIKAVAPPFDYIIGTDVV 154 (221)
Q Consensus 134 ~~~~~~~~~~~fD~Vi~~d~~ 154 (221)
+..-. .+..||.|++.+++
T Consensus 276 n~~~r--sn~~fDaIvcDPPY 294 (421)
T KOG2671|consen 276 NPPLR--SNLKFDAIVCDPPY 294 (421)
T ss_pred Ccchh--hcceeeEEEeCCCc
Confidence 54322 25689999986653
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.019 Score=48.82 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=64.7
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
...+|+|.|.|.+.-.+...-.+|-+++. +.+++.+.... -+ |..+. ++... . .+
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~--~g---------------V~~v~---gdmfq--~-~P 235 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA--PG---------------VEHVA---GDMFQ--D-TP 235 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc--CC---------------cceec---ccccc--c-CC
Confidence 68999999999877766666566666664 44555444321 11 22222 22211 1 34
Q ss_pred CccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 144 PFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+-|+|+.-.+++++ ++...+++.|.+.|+|+|.+++...
T Consensus 236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 56799999999984 5688899999999999999998764
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.022 Score=48.78 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=70.9
Q ss_pred CCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~-ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++|||-=||||+=||-.|.. +. +|++-|+ +++++++++|+..|.. .+..+.+.|-... +...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------------~~~~v~n~DAN~l--m~~~ 118 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------------EDAEVINKDANAL--LHEL 118 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------------ccceeecchHHHH--HHhc
Confidence 679999999999999998864 55 7999998 7799999999999932 2333333211111 1122
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
...||+|=. ||+-. ..++++...+..+.+|.+-+...
T Consensus 119 ~~~fd~IDi-DPFGS---PaPFlDaA~~s~~~~G~l~vTAT 155 (380)
T COG1867 119 HRAFDVIDI-DPFGS---PAPFLDAALRSVRRGGLLCVTAT 155 (380)
T ss_pred CCCccEEec-CCCCC---CchHHHHHHHHhhcCCEEEEEec
Confidence 368998843 55333 45788888888888998887654
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.075 Score=44.65 Aligned_cols=117 Identities=21% Similarity=0.208 Sum_probs=66.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHH--HHHHHH--hhhcc--------------ccCC-------
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLL--KRNVEW--NTSRI--------------SQMN------- 116 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~--~~n~~~--n~~~~--------------~~~~------- 116 (221)
....+||-=|||.|.++.-+|.+|.++-+-+.+. |+=.- .-|.-+ |...+ .|..
T Consensus 149 r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~ 228 (369)
T KOG2798|consen 149 RTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDI 228 (369)
T ss_pred ccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccc
Confidence 3566899999999999999999999888877665 43211 112211 11111 0111
Q ss_pred -CCC--CCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 117 -PGS--DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 117 -~~~--~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
|.+ ...+......+|+.+.-......+.||+|+.+-.+=-.+.+-..++++..+|+|||+.+=
T Consensus 229 ~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiN 294 (369)
T KOG2798|consen 229 HPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWIN 294 (369)
T ss_pred cccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEe
Confidence 110 001112222222222211122235799999882222345677788999999999998653
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.016 Score=48.86 Aligned_cols=98 Identities=20% Similarity=0.189 Sum_probs=62.2
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
....|.+||=+|||+ |++++..|+ .|| +|+.+|. +.-++.|++ .+. ..+...... ....
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~----~Ga------------~~~~~~~~~-~~~~ 228 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK----FGA------------TVTDPSSHK-SSPQ 228 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH----hCC------------eEEeecccc-ccHH
Confidence 345788999999998 999988886 587 5999997 558888876 221 011110000 0000
Q ss_pred Cc------cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HI------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~------~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.. ......+|+.+-+ +-.+.-+++.-..++++|.+.++.
T Consensus 229 ~~~~~v~~~~g~~~~d~~~dC------sG~~~~~~aai~a~r~gGt~vlvg 273 (354)
T KOG0024|consen 229 ELAELVEKALGKKQPDVTFDC------SGAEVTIRAAIKATRSGGTVVLVG 273 (354)
T ss_pred HHHHHHHhhccccCCCeEEEc------cCchHHHHHHHHHhccCCEEEEec
Confidence 00 0112347777654 556777788888899999977765
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.092 Score=47.44 Aligned_cols=42 Identities=36% Similarity=0.479 Sum_probs=34.2
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~ 103 (221)
..++.+|+=+|||. |+.++.+|+ +|++|+++|. ++.++.+++
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45688999999998 999998875 6999999997 556666654
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.27 Score=42.87 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=87.5
Q ss_pred cCeEEEEeeCCCCCc-ccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhh
Q 027594 19 LGHQLQFSQDPNSKH-LGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEV 97 (221)
Q Consensus 19 ~~~~~~i~~~~~~~~-~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~ 97 (221)
....++++..|.... .-.+.|+++- +||.++..+ ....+ +||=|+=.-|.++..++..+.. ..+|.--+
T Consensus 7 ~~~~~~l~r~p~~~~~~~l~awdaad---e~ll~~~~~-----~~~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~~~ 76 (378)
T PRK15001 7 GFRSLTLQRFPATDDVNPLQAWEAAD---EYLLQQLDD-----TEIRG-PVLILNDAFGALSCALAEHKPY-SIGDSYIS 76 (378)
T ss_pred CCceeEEEECCCCCCcCcccccccHH---HHHHHHHhh-----cccCC-CEEEEcCchhHHHHHHHhCCCC-eeehHHHH
Confidence 347788888886544 4589999875 344444311 11223 8999999999999999965553 34664335
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
...++.|++.|++. .+.++.... .+ .....+|+|+.--+ =....++.++..+..++.|++.+
T Consensus 77 ~~~~~~n~~~n~~~----------~~~~~~~~~----~~---~~~~~~d~vl~~~P-K~~~~l~~~l~~l~~~l~~~~~i 138 (378)
T PRK15001 77 ELATRENLRLNGID----------ESSVKFLDS----TA---DYPQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRI 138 (378)
T ss_pred HHHHHHHHHHcCCC----------cccceeecc----cc---cccCCCCEEEEEeC-CCHHHHHHHHHHHHhhCCCCCEE
Confidence 56778899999862 123433321 11 12456899885211 12344666777777889999998
Q ss_pred EEEEEecC
Q 027594 178 LLGYEIRS 185 (221)
Q Consensus 178 ~i~~~~r~ 185 (221)
+++...+.
T Consensus 139 i~g~~~k~ 146 (378)
T PRK15001 139 IAGAKARD 146 (378)
T ss_pred EEEEecCC
Confidence 76665544
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.043 Score=46.83 Aligned_cols=95 Identities=26% Similarity=0.237 Sum_probs=58.3
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...+|++|+=.|+|- |..++-+|+ +|++|++.|. ++-++.+++- +. -.+ .++.+.+.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l----GA--------------d~~--i~~~~~~~ 222 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL----GA--------------DHV--INSSDSDA 222 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh----CC--------------cEE--EEcCCchh
Confidence 345789999999983 567777776 7999999997 4466666542 21 122 22232222
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.....+.||+|+..-+ ...+...-++|+++|++.++.-
T Consensus 223 ~~~~~~~~d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 223 LEAVKEIADAIIDTVG-------PATLEPSLKALRRGGTLVLVGL 260 (339)
T ss_pred hHHhHhhCcEEEECCC-------hhhHHHHHHHHhcCCEEEEECC
Confidence 2222334999986522 3444555677888888776543
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.21 Score=43.68 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=69.2
Q ss_pred CCCCeEEEeCCCccHHHHHH-HHhC--CEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGM-ALLG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~-a~~g--a~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
-+|.||||+.|-.|-=+... +.+. ..|++.|.. .-+..++.|+.+.+. .+..+.++|-..+..
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------------~ntiv~n~D~~ef~~- 306 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------------TNTIVSNYDGREFPE- 306 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------------CceEEEccCcccccc-
Confidence 37889999999997544444 3333 248899974 488899999998875 333444443322211
Q ss_pred cccCCCccEEEEccc------ccCC----------------cCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 139 KAVAPPFDYIIGTDV------VYAE----------------HLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~------~y~~----------------~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
....++||-|+..-+ ++.. ..-..|+....+++++||+++.+...-.
T Consensus 307 ~~~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~ 375 (460)
T KOG1122|consen 307 KEFPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSIT 375 (460)
T ss_pred cccCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecc
Confidence 112337999876432 2221 2345577777788899999887665443
|
|
| >COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.17 Score=41.11 Aligned_cols=140 Identities=11% Similarity=0.106 Sum_probs=95.2
Q ss_pred eecch---HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhcc
Q 027594 37 TVWDA---SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI 112 (221)
Q Consensus 37 ~~W~~---~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~ 112 (221)
++|.+ ...|..|+..- .....+.+ |..=||+-.++-.+.+..-++.+++. |+=...++.|++.
T Consensus 66 RL~~a~~lpa~l~~yl~~i-------~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~----- 132 (279)
T COG2961 66 RLWQAADLPAELEPYLDAV-------RQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAG----- 132 (279)
T ss_pred HHHhcCCchHHHHHHHHHH-------HHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCC-----
Confidence 45554 33566676544 12334433 78888888877777777778999997 6667777777663
Q ss_pred ccCCCCCCCCCceEEEEEE-ecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcC--CCeEEEEEEEecChhHH
Q 027594 113 SQMNPGSDLLGSIQAVELD-WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVH 189 (221)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~d-w~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~--~~g~~~i~~~~r~~~~~ 189 (221)
..++.+...| |........+.++--+|+..+++-...+...+++++.+.++ ++|+..|-++.......
T Consensus 133 ---------d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~ 203 (279)
T COG2961 133 ---------DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQI 203 (279)
T ss_pred ---------CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHH
Confidence 2466766532 22211111223456778877777778899999999999887 78998898988777777
Q ss_pred HHHHHHHhc
Q 027594 190 EQMLQMWKS 198 (221)
Q Consensus 190 ~~~~~~~~~ 198 (221)
+.|++.++.
T Consensus 204 ~~f~~~L~~ 212 (279)
T COG2961 204 RRFLRALEA 212 (279)
T ss_pred HHHHHHHhh
Confidence 888877754
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.038 Score=49.15 Aligned_cols=119 Identities=17% Similarity=0.227 Sum_probs=74.2
Q ss_pred eEEEeCCCccHHHHHHHHhCC---EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 67 RVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
.|+|+.+|.|-++.++..... .|+-++.++.+... -.-|+ .-.-.||.+... .-++
T Consensus 368 NVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vI----ydRGL---------------IG~yhDWCE~fs--TYPR 426 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVI----YDRGL---------------IGVYHDWCEAFS--TYPR 426 (506)
T ss_pred eeeeecccccHHHHHhccCCceEEEecccCCCCcchhh----hhccc---------------chhccchhhccC--CCCc
Confidence 799999999988777765542 23333333333222 12222 223468876543 3468
Q ss_pred CccEEEEcccccC---CcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc-CCeEEEecCCC
Q 027594 144 PFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPKAK 209 (221)
Q Consensus 144 ~fD~Vi~~d~~y~---~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~-~f~v~~v~~~~ 209 (221)
.||+|-++.++-. .-.+..++-++.++|+|+|.++|-+. .++..+....++. .|++..+..+.
T Consensus 427 TYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~---~~vl~~v~~i~~~lrW~~~~~d~e~ 493 (506)
T PF03141_consen 427 TYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT---VDVLEKVKKIAKSLRWEVRIHDTED 493 (506)
T ss_pred chhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc---HHHHHHHHHHHHhCcceEEEEecCC
Confidence 9999988876543 34588999999999999999988332 2344444444443 56666554443
|
; GO: 0008168 methyltransferase activity |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.028 Score=44.59 Aligned_cols=55 Identities=25% Similarity=0.274 Sum_probs=40.0
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHH
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~ 103 (221)
-...|.+.+... .-.+|..|||.-||+|..++++.++|.+.+++|+ ++.++.|++
T Consensus 176 kP~~l~~~lI~~--------~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 176 KPVELIERLIKA--------STNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-HHHHHHHHHH--------HS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred CCHHHHHHHHHh--------hhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 355666766655 2346889999999999999999999999999998 557777653
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.073 Score=40.70 Aligned_cols=116 Identities=16% Similarity=0.121 Sum_probs=76.6
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHH-HHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGM-ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS 119 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~-a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (221)
++..|++.+.+.. ..+.+|+=|||=+-...+.- ...+.++++.|++. |- +.-
T Consensus 11 T~~~l~~~l~~~~---------~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~-----RF--~~~----------- 63 (162)
T PF10237_consen 11 TAEFLARELLDGA---------LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR-----RF--EQF----------- 63 (162)
T ss_pred HHHHHHHHHHHhc---------CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc-----hH--Hhc-----------
Confidence 4567777777542 24578999988765555544 12345688998754 11 111
Q ss_pred CCCCceEEEEEEecCCCCcc-ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 120 DLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 120 ~~~~~v~~~~~dw~~~~~~~-~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
.++ .+...|......++ ....+||+|++.+|+...+.......+++.++++++.++++......
T Consensus 64 --~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~~ 128 (162)
T PF10237_consen 64 --GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEME 128 (162)
T ss_pred --CCc-ceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHHH
Confidence 112 34455555554432 12569999999999988888889999999999999998887765443
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.052 Score=44.73 Aligned_cols=106 Identities=17% Similarity=0.148 Sum_probs=61.4
Q ss_pred eEEEeCCCc---cHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 67 RVIELGAGC---GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 67 ~vLelGcG~---G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..||||||. |.. -..|+. .++|+-+|. +-++..++.-+..+. .+...++..|..+...+.
T Consensus 71 QFLDlGsGlPT~~nv-HevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------~g~t~~v~aD~r~p~~iL 137 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNV-HEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------RGRTAYVQADLRDPEAIL 137 (267)
T ss_dssp EEEEET--S--SS-H-HHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------TSEEEEEE--TT-HHHHH
T ss_pred eEEEcccCCCCCCCH-hHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------CccEEEEeCCCCCHHHHh
Confidence 699999995 222 223332 678999998 457777777665543 134678887776654321
Q ss_pred c---c-----CCCccEEEEcccccCC---cCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 140 A---V-----APPFDYIIGTDVVYAE---HLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 140 ~---~-----~~~fD~Vi~~d~~y~~---~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
. . ....=.|+...++++. ++...+++.+...|.||+++.|++....
T Consensus 138 ~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 138 AHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp CSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred cCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 1 0 1122345666777763 5688899999999999999999887654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.079 Score=41.33 Aligned_cols=33 Identities=18% Similarity=0.004 Sum_probs=26.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC-C--EEEEecc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG-C--NVITTDQ 94 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g-a--~v~~~D~ 94 (221)
..++.+|||+||-.|..+-.+-++. . .|.++|+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl 102 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL 102 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence 3468899999999999999887663 3 4888995
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.06 Score=43.57 Aligned_cols=85 Identities=22% Similarity=0.290 Sum_probs=42.0
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
.+|||.=+|.|.-++.+|..|++||+++.+. +..+++.-++...... ......-.++++...|-.+.- .....+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~---~~~~~~~~ri~l~~~d~~~~L--~~~~~s 151 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDP---ELLAEAMRRIQLIHGDALEYL--RQPDNS 151 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHST---TTHHHHHHHEEEEES-CCCHC--CCHSS-
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCc---HhHHHHHhCCEEEcCCHHHHH--hhcCCC
Confidence 4899999999999999999999999999744 3333333332211100 000000135777664433322 234679
Q ss_pred ccEEEEcccccC
Q 027594 145 FDYIIGTDVVYA 156 (221)
Q Consensus 145 fD~Vi~~d~~y~ 156 (221)
||+|.. ||+|.
T Consensus 152 ~DVVY~-DPMFp 162 (234)
T PF04445_consen 152 FDVVYF-DPMFP 162 (234)
T ss_dssp -SEEEE---S--
T ss_pred CCEEEE-CCCCC
Confidence 999997 55564
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.018 Score=48.37 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=48.6
Q ss_pred EEeCCCcc-HHHHHHHH-hCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC---CCcc-cc
Q 027594 69 IELGAGCG-VAGFGMAL-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE---DHIK-AV 141 (221)
Q Consensus 69 LelGcG~G-~~~l~~a~-~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~---~~~~-~~ 141 (221)
+|||.|+- +..+.-++ .+....+||+.+ .++.++.|+++|++ .+.+.++...-... +... ..
T Consensus 107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l-----------ss~ikvV~~~~~ktll~d~~~~~~ 175 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL-----------SSLIKVVKVEPQKTLLMDALKEES 175 (419)
T ss_pred eeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccccc-----------ccceeeEEecchhhcchhhhccCc
Confidence 68877653 22222233 355689999966 89999999999987 34555554311111 0111 12
Q ss_pred CCCccEEEEcccccCC
Q 027594 142 APPFDYIIGTDVVYAE 157 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~ 157 (221)
+..||++++|+++|..
T Consensus 176 e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 176 EIIYDFCMCNPPFFEN 191 (419)
T ss_pred cceeeEEecCCchhhc
Confidence 4469999999999853
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.13 Score=45.64 Aligned_cols=97 Identities=19% Similarity=0.303 Sum_probs=64.8
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE-EEEecchh-hHHHHH-HHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLK-RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~-v~~~D~~~-~l~~~~-~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
-++|.+|||.--++.-+-+-|.+ |+.+|++. +++.+. +|+..+ ....+...|. .....+.
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~--------------~~~~~~~~d~---~~l~fed 112 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER--------------PEMQMVEMDM---DQLVFED 112 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--------------cceEEEEecc---hhccCCC
Confidence 38999999999888888877876 99999855 555443 343221 2344444333 2334567
Q ss_pred CCccEEEEcccc----------cCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 143 PPFDYIIGTDVV----------YAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 143 ~~fD~Vi~~d~~----------y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
++||+||.=..+ ++.......+..+.++++++|++..
T Consensus 113 ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 113 ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 889999874333 2333455677888999999998654
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.07 Score=44.55 Aligned_cols=46 Identities=20% Similarity=0.134 Sum_probs=40.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHH
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~ 107 (221)
-.+|..|||--||+|..++++.++|.+.+++|+ ++-++.+++.++.
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence 357889999999999999999999999999998 5688888877654
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.31 Score=42.49 Aligned_cols=20 Identities=15% Similarity=0.272 Sum_probs=16.1
Q ss_pred CCCeEEEeCCCccHHHHHHH
Q 027594 64 KGKRVIELGAGCGVAGFGMA 83 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a 83 (221)
+..+|+|+|||+|..++.+.
T Consensus 63 ~~~~iaDlGcs~G~ntl~~v 82 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHII 82 (386)
T ss_pred cceeEEEecCCCCccHHHHH
Confidence 35689999999998877663
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.13 Score=41.61 Aligned_cols=46 Identities=13% Similarity=0.007 Sum_probs=39.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n 108 (221)
.+|..|||--||+|..++++.++|.+++++|+ ++-.+.+.+.++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999998 55777777766543
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.047 Score=45.17 Aligned_cols=111 Identities=18% Similarity=0.222 Sum_probs=66.3
Q ss_pred cccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhc
Q 027594 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSR 111 (221)
Q Consensus 33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~ 111 (221)
.+....||-.. +|+... -.+..++|.|||.|-....- -...+++.|... .+..+++.
T Consensus 27 ~tr~~~Wp~v~---qfl~~~----------~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~------- 84 (293)
T KOG1331|consen 27 ATRAAPWPMVR---QFLDSQ----------PTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS------- 84 (293)
T ss_pred ccccCccHHHH---HHHhcc----------CCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC-------
Confidence 34566787543 344422 24789999999998321110 112477788643 44433320
Q ss_pred cccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC---HHHHHHHHHHhcCCCeEEEE
Q 027594 112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~---~~~l~~~~~~ll~~~g~~~i 179 (221)
+...... .+....+....+||.+++..++++.+. -...++.+.+.++|||..++
T Consensus 85 -----------~~~~~~~---ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv 141 (293)
T KOG1331|consen 85 -----------GGDNVCR---ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV 141 (293)
T ss_pred -----------CCceeeh---hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence 1111112 222334455789999999999998554 45677888888999998655
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.034 Score=46.77 Aligned_cols=69 Identities=22% Similarity=0.240 Sum_probs=43.4
Q ss_pred eEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
+++||-||.|.+++.+...|.+ +.++|+ +.+.+.-+.|.. .....|.........+. .
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------------------~~~~~Di~~~~~~~l~~-~ 61 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------------------EVICGDITEIDPSDLPK-D 61 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------------------EEEESHGGGCHHHHHHH-T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------------------ccccccccccccccccc-c
Confidence 7999999999999999999987 678898 557777777654 11222222222111222 5
Q ss_pred ccEEEEccccc
Q 027594 145 FDYIIGTDVVY 155 (221)
Q Consensus 145 fD~Vi~~d~~y 155 (221)
+|++++++|.-
T Consensus 62 ~D~l~ggpPCQ 72 (335)
T PF00145_consen 62 VDLLIGGPPCQ 72 (335)
T ss_dssp -SEEEEE---T
T ss_pred ceEEEeccCCc
Confidence 99999997754
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.059 Score=38.07 Aligned_cols=31 Identities=23% Similarity=0.274 Sum_probs=27.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ 94 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~ 94 (221)
+....+|||||.|++--.+.+.|.+=.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 3457999999999999999999988888885
|
; GO: 0008168 methyltransferase activity |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.25 Score=39.15 Aligned_cols=115 Identities=10% Similarity=-0.002 Sum_probs=64.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+...+.|||||-|-+-+.++.+-.+ +.+.++ ..+-+..+..|+..... +.+....++.+....--.....-.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~-----~a~~~~~ni~vlr~namk~lpn~f 134 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRT-----SAEGQYPNISVLRTNAMKFLPNFF 134 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcc-----ccccccccceeeeccchhhccchh
Confidence 3457999999999888888887664 778887 44777777777654421 111112344444321111100000
Q ss_pred cC--CCccEEEEcccccCC------cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VA--PPFDYIIGTDVVYAE------HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~--~~fD~Vi~~d~~y~~------~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.. -+-+..+--|+-+.. -.-..++.....+|++||.+|.....
T Consensus 135 ~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv 185 (249)
T KOG3115|consen 135 EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV 185 (249)
T ss_pred hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence 00 011333333443321 12345778888899999999886543
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.019 Score=47.82 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=41.8
Q ss_pred CCCeEEEeCCCccHHHH-HHHHhCCE-EEEecc-hhhHHHHHHHHHHhhh
Q 027594 64 KGKRVIELGAGCGVAGF-GMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l-~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
.+..|.||-+|.|.+.+ .+.+.||+ |.+.|. |.+++.+++|++.|+.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V 243 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNV 243 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcch
Confidence 34689999999999999 77788987 999997 7799999999999976
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.36 Score=41.14 Aligned_cols=94 Identities=22% Similarity=0.251 Sum_probs=53.9
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCc-eEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS-IQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~-v~~~~~dw~~~~~ 137 (221)
.++.+||=.|||. |..++.+|+ +|+ +|+++|. ++-++.+++ .+. +. +.....++. .
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa------------~~vi~~~~~~~~---~ 228 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGA------------DKLVNPQNDDLD---H 228 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCC------------cEEecCCcccHH---H
Confidence 3688999999986 777777775 487 5889986 455555543 221 00 000000110 0
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.......+|+|+-+ .- ....+....++++++|++++..
T Consensus 229 ~~~~~g~~D~vid~--~G----~~~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 229 YKAEKGYFDVSFEV--SG----HPSSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred HhccCCCCCEEEEC--CC----CHHHHHHHHHHhhcCCEEEEEc
Confidence 11112358888743 22 2345566778889999987654
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.58 Score=40.08 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=15.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHH
Q 027594 63 LKGKRVIELGAGCGVAGFGMAL 84 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~ 84 (221)
.+..+|+|+||.+|..++.+..
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~ 36 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVS 36 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHH
T ss_pred CCceEEEecCCCCCccHHHHHH
Confidence 3456999999999988887653
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.43 E-value=1.2 Score=38.36 Aligned_cols=132 Identities=15% Similarity=0.088 Sum_probs=70.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC--C----EEEEecch-hhHHHHHHHHH-HhhhccccCCCCCCCCCceEEEEEEec
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG--C----NVITTDQI-EVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWG 133 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g--a----~v~~~D~~-~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~v~~~~~dw~ 133 (221)
..+|.+|||+.+-.|-=++.+.... . .|++-|.. .=+..+++-+. .+. .++.+...+-.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-------------~~~~v~~~~~~ 219 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-------------PNLLVTNHDAS 219 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-------------cceeeecccce
Confidence 3478899999999997665554332 2 58899973 32222222221 111 12222222221
Q ss_pred CCCCc------cccCCCccEEEEcccccCC------------------------cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 134 NEDHI------KAVAPPFDYIIGTDVVYAE------------------------HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 134 ~~~~~------~~~~~~fD~Vi~~d~~y~~------------------------~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..... ......||-|++. +.... ..--.++..-.++|++||.++.+...
T Consensus 220 ~~p~~~~~~~~~~~~~~fDrVLvD-VPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 220 LFPNIYLKDGNDKEQLKFDRVLVD-VPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred eccccccccCchhhhhhcceeEEe-cccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 11111 1123578888762 22210 01223666677889999998876643
Q ss_pred ----cChhHHHHHHHHHhcCCeEEEecC
Q 027594 184 ----RSTSVHEQMLQMWKSNFNVKLVPK 207 (221)
Q Consensus 184 ----r~~~~~~~~~~~~~~~f~v~~v~~ 207 (221)
.+..+....++.+...+.+..+..
T Consensus 299 LnpieNEaVV~~~L~~~~~~~~lv~~~~ 326 (375)
T KOG2198|consen 299 LNPIENEAVVQEALQKVGGAVELVDVSG 326 (375)
T ss_pred CCchhhHHHHHHHHHHhcCcccceeecc
Confidence 444566666666666666654433
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.11 Score=44.71 Aligned_cols=97 Identities=25% Similarity=0.245 Sum_probs=58.1
Q ss_pred CCCeEEEeCCCc-cHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-
Q 027594 64 KGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~~-ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~- 138 (221)
++.+|+=+|||+ |++++.+++. |+ +|+++|. ++=++.+++-... +.+....-+ ......
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~---------------~~~~~~~~~-~~~~~~~ 231 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA---------------DVVVNPSED-DAGAEIL 231 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC---------------eEeecCccc-cHHHHHH
Confidence 444999999998 9999888764 76 5899997 5566666652111 001000000 000000
Q ss_pred cc-cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~-~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.. ....+|+++=+-- ....+..+.++++|+|.+.+...
T Consensus 232 ~~t~g~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv 270 (350)
T COG1063 232 ELTGGRGADVVIEAVG------SPPALDQALEALRPGGTVVVVGV 270 (350)
T ss_pred HHhCCCCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEec
Confidence 11 1246899885522 45577888889999999777543
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.15 Score=43.58 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=34.8
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHH
Q 027594 65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE 106 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~ 106 (221)
..+++||-||.|.+++.+...|.+ +.+.|+ +.+++.-+.|..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence 368999999999999999999998 566798 558877777654
|
|
| >KOG3350 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.098 Score=40.33 Aligned_cols=90 Identities=16% Similarity=0.155 Sum_probs=61.6
Q ss_pred EEEEEEecCCCCccc-cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEE
Q 027594 126 QAVELDWGNEDHIKA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL 204 (221)
Q Consensus 126 ~~~~~dw~~~~~~~~-~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~ 204 (221)
.+...|...+.+++. ....||+|++.+++...+.+..-..++..+.++.-+++++...+-.+.....+...+-.|..+
T Consensus 116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~~~~sF~Pe- 194 (217)
T KOG3350|consen 116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPVLKCSFRPE- 194 (217)
T ss_pred eeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhhhhccccch-
Confidence 556667776665542 346799999999988888889999999999999989998887655444444444334456544
Q ss_pred ecCCCCCcccCCC
Q 027594 205 VPKAKESTMWGNP 217 (221)
Q Consensus 205 v~~~~~~~~~~~~ 217 (221)
...-+..+|+..
T Consensus 195 -H~~nLaNeF~cy 206 (217)
T KOG3350|consen 195 -HERNLANEFRCY 206 (217)
T ss_pred -hhcccccceeEE
Confidence 334455555543
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.047 Score=48.42 Aligned_cols=105 Identities=22% Similarity=0.171 Sum_probs=72.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC-C
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-H 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~-~ 137 (221)
.++.+|||-=|+||+-+|-.|+. |. +|++.|. +.+++..++|++.|+. .+.+.....|-.... .
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----------~~ive~~~~DA~~lM~~ 176 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----------EDIVEPHHSDANVLMYE 176 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----------hhhcccccchHHHHHHh
Confidence 35679999999999999999975 33 5999997 5599999999999964 233333332222111 1
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+.....||+|=. |++-. ...+++...+.++.||.+++...
T Consensus 177 ~~~~~~~FDvIDL-DPyGs---~s~FLDsAvqav~~gGLL~vT~T 217 (525)
T KOG1253|consen 177 HPMVAKFFDVIDL-DPYGS---PSPFLDSAVQAVRDGGLLCVTCT 217 (525)
T ss_pred ccccccccceEec-CCCCC---ccHHHHHHHHHhhcCCEEEEEec
Confidence 1233578999854 45332 34778888888999999888543
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.59 Score=35.16 Aligned_cols=93 Identities=14% Similarity=0.131 Sum_probs=58.1
Q ss_pred CeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
.+.+|||+|-|.+-+.+++.|. .-++++. +-.+...+..+-+.+. .....+..-|.-.. ..+
T Consensus 74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~-----------~k~trf~RkdlwK~-----dl~ 137 (199)
T KOG4058|consen 74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC-----------AKSTRFRRKDLWKV-----DLR 137 (199)
T ss_pred CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc-----------ccchhhhhhhhhhc-----ccc
Confidence 4899999999999999999995 4889997 5588888877666664 23344443221111 123
Q ss_pred Ccc--EEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 144 PFD--YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 144 ~fD--~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.|. +|+.. ++.+..|...+..-+..+..++-
T Consensus 138 dy~~vviFga-----es~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 138 DYRNVVIFGA-----ESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred ccceEEEeeh-----HHHHhhhHHHHHhhCcCCCeEEE
Confidence 333 33332 34455566666655666666544
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.38 Score=41.11 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=52.6
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc----hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ----IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~----~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++.+||=+|+|. |..++.+|+ .|++|++++. ++-++.++ ..+. .. .++.+..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~----~~Ga---------------~~--v~~~~~~ 229 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE----ELGA---------------TY--VNSSKTP 229 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH----HcCC---------------EE--ecCCccc
Confidence 3678999999986 777776665 5889998874 22333332 2221 11 1111110
Q ss_pred Cc-cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~-~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.. ......+|+|+-+ .- ....+....++++++|++++..
T Consensus 230 ~~~~~~~~~~d~vid~--~g----~~~~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 230 VAEVKLVGEFDLIIEA--TG----VPPLAFEALPALAPNGVVILFG 269 (355)
T ss_pred hhhhhhcCCCCEEEEC--cC----CHHHHHHHHHHccCCcEEEEEe
Confidence 00 0113468888854 22 2235667778899999877644
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.97 Score=40.81 Aligned_cols=108 Identities=15% Similarity=0.051 Sum_probs=65.8
Q ss_pred CCCeEEEeCCCccHHHHHHHH-hC-----CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMAL-LG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~-~g-----a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+..+|.|--||+|..-+.+++ .+ ..+++.+. +....+++.|+-.++... .+.....+--...
T Consensus 186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----------~~~i~~~dtl~~~ 254 (489)
T COG0286 186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----------DANIRHGDTLSNP 254 (489)
T ss_pred CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----------cccccccccccCC
Confidence 445999999999855444443 22 34788896 569999999999988621 1111111000000
Q ss_pred Cc--cccCCCccEEEEcccccCC-------------------------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 137 HI--KAVAPPFDYIIGTDVVYAE-------------------------HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 137 ~~--~~~~~~fD~Vi~~d~~y~~-------------------------~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.. .....+||+|++++++... ..-..++..+...|+|+|+.-++.+
T Consensus 255 ~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 255 KHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred cccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 00 1234679999999997510 0125577888888999876555443
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.34 Score=41.98 Aligned_cols=117 Identities=14% Similarity=0.119 Sum_probs=66.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++....|||+|.|-+...+|. .++ +-+++++ ...-+.+..|...+.-...-++ .....+..++.+.-.....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG---k~~~~~~~i~gsf~~~~~v 266 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG---KKPNKIETIHGSFLDPKRV 266 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC---CCcCceeecccccCCHHHH
Confidence 34677899999999866555554 443 2445543 2233333333333221100000 0023455555444443333
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.......++|+++.+.+.++....+- .+.+-+++|.+++-.-+
T Consensus 267 ~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 267 TEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKP 309 (419)
T ss_pred HHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEecccc
Confidence 33456789999999999988776666 66777888888765433
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.46 Score=38.82 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=56.1
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
..+|+|||||.=-+++.+... ++.+++.|+ ..+++.+..-+..-+. ...+...|.-.. .+
T Consensus 106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-------------~~~~~v~Dl~~~----~~ 168 (251)
T PF07091_consen 106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-------------PHDARVRDLLSD----PP 168 (251)
T ss_dssp -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--------------CEEEEEE-TTTS----HT
T ss_pred CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-------------CcceeEeeeecc----CC
Confidence 569999999988888876654 468999998 4588888876665543 344444332211 23
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
....|+.+.-=++.-.+. ....++.+..+ ..-.++++++.|+
T Consensus 169 ~~~~DlaLllK~lp~le~q~~g~g~~ll~~~--~~~~~vVSfPtrS 212 (251)
T PF07091_consen 169 KEPADLALLLKTLPCLERQRRGAGLELLDAL--RSPHVVVSFPTRS 212 (251)
T ss_dssp TSEESEEEEET-HHHHHHHSTTHHHHHHHHS--CESEEEEEEES--
T ss_pred CCCcchhhHHHHHHHHHHHhcchHHHHHHHh--CCCeEEEeccccc
Confidence 567899987644332110 11112222222 2346777887655
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.38 Score=35.08 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=29.8
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCc-cHHHHHHHHhCCEEEEecchh
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC-GVAGFGMALLGCNVITTDQIE 96 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~-G~~~l~~a~~ga~v~~~D~~~ 96 (221)
-+|+|+..+. ...+++|+|-|- --.+..++..|..|++||+.+
T Consensus 3 ~~a~~ia~~~----------~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~ 46 (127)
T PF03686_consen 3 DFAEYIARLN----------NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINP 46 (127)
T ss_dssp HHHHHHHHHS-----------SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred hHHHHHHHhC----------CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence 4788887552 334999999997 567888889999999999743
|
; PDB: 2K4M_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.57 Score=39.55 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=43.6
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHH
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~ 107 (221)
++|.+.+.+.+ ...+|..++|.=+|.|--+..+++. ..+|++.|. ++++..+++.++.
T Consensus 6 pVll~Evl~~L-------~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~ 66 (305)
T TIGR00006 6 SVLLDEVVEGL-------NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD 66 (305)
T ss_pred chhHHHHHHhc-------CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 45555555442 2236679999999999999988865 368999997 6799999887764
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.1 Score=37.61 Aligned_cols=81 Identities=21% Similarity=0.294 Sum_probs=42.6
Q ss_pred CCCCCeEEEeCCCccHH-HH--HHHHhCCE-EEEecch----hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEec
Q 027594 62 KLKGKRVIELGAGCGVA-GF--GMALLGCN-VITTDQI----EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~-~l--~~a~~ga~-v~~~D~~----~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~ 133 (221)
..+++++|=+|+| |.- ++ .++..|++ |+.++.. +..+.+.+.+... ...+.+...+|.
T Consensus 123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~-------------~~~~~~~~~d~~ 188 (289)
T PRK12548 123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQE-------------VPECIVNVYDLN 188 (289)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhc-------------CCCceeEEechh
Confidence 4578899999998 532 22 24467885 9888853 2222222222211 122334445664
Q ss_pred CCCCccccCCCccEEEEcccccC
Q 027594 134 NEDHIKAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 134 ~~~~~~~~~~~fD~Vi~~d~~y~ 156 (221)
+.......-..+|+||.+-++-.
T Consensus 189 ~~~~~~~~~~~~DilINaTp~Gm 211 (289)
T PRK12548 189 DTEKLKAEIASSDILVNATLVGM 211 (289)
T ss_pred hhhHHHhhhccCCEEEEeCCCCC
Confidence 43222212235688888766543
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.21 Score=41.73 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=32.4
Q ss_pred cCCCccEEEEcccccCC----------------cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGTDVVYAE----------------HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~----------------~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..++||+|+++++++.. ..+..++..+.++|+|+|.+++....
T Consensus 24 ~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~ 82 (284)
T PRK11524 24 PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST 82 (284)
T ss_pred ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence 35789999999886521 11356888999999999999986543
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.86 Score=38.24 Aligned_cols=84 Identities=12% Similarity=0.010 Sum_probs=49.8
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+||=+|||. |+.++.+|+ +|++ |+++|. ++-++.++.. .. +.. ...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~--------------i~~-----~~~---- 196 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV--------------LDP-----EKD---- 196 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc--------------cCh-----hhc----
Confidence 567899999986 888887775 5887 666775 3333333211 00 000 000
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
....+|+|+-+ .- ....+....++++++|++++..
T Consensus 197 -~~~g~Dvvid~--~G----~~~~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 197 -PRRDYRAIYDA--SG----DPSLIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred -cCCCCCEEEEC--CC----CHHHHHHHHHhhhcCcEEEEEe
Confidence 13468888743 22 2345667778899999987643
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=92.13 E-value=1.4 Score=35.09 Aligned_cols=104 Identities=17% Similarity=0.133 Sum_probs=52.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh------CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~------ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+.+.|+|+|.=.|--.+..|.+ .++|+++|+. .... +..++..-. .++|++...+..+.+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~-----------~~rI~~i~Gds~d~~ 98 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPM-----------SPRITFIQGDSIDPE 98 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG---------------TTEEEEES-SSSTH
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccc-----------cCceEEEECCCCCHH
Confidence 5679999999888766666542 3579999972 2111 111111111 367899886665543
Q ss_pred Ccc---cc--CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HIK---AV--APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~~---~~--~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
... .. .....+|+ -|.=+..++.-.-++....++++|+++++.+
T Consensus 99 ~~~~v~~~~~~~~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 99 IVDQVRELASPPHPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp HHHTSGSS----SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred HHHHHHHhhccCCceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 221 11 12233444 4666777777788888999999999988743
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.1 Score=37.46 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=57.9
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..+..|+.||==|.|.|+ +++.+|++|++++..|+ ++..+...+.++.++ +++....|..+.
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--------------~~~~y~cdis~~ 98 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--------------EAKAYTCDISDR 98 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--------------ceeEEEecCCCH
Confidence 356789999999999984 78888999999999997 455555555555543 467777777776
Q ss_pred CCc-------cccCCCccEEEEcccc
Q 027594 136 DHI-------KAVAPPFDYIIGTDVV 154 (221)
Q Consensus 136 ~~~-------~~~~~~fD~Vi~~d~~ 154 (221)
++. ...-+..|+++.|--+
T Consensus 99 eei~~~a~~Vk~e~G~V~ILVNNAGI 124 (300)
T KOG1201|consen 99 EEIYRLAKKVKKEVGDVDILVNNAGI 124 (300)
T ss_pred HHHHHHHHHHHHhcCCceEEEecccc
Confidence 543 1234678988887443
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=92.00 E-value=0.66 Score=38.27 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=66.7
Q ss_pred CeEEEeCCCccHHHHHHHH-hCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC---cc--
Q 027594 66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---IK-- 139 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~-~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~---~~-- 139 (221)
..|+.||||.=.-+.-+.. .+..++=+|.|++++.=++-+..++.. ...+.+++..|.. ..- +.
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~---------~~~~~~~v~~Dl~-~~w~~~L~~~ 152 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAE---------PPAHRRAVPVDLR-QDWPAALAAA 152 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCC---------CCCceEEeccCch-hhHHHHHHhC
Confidence 3699999996544444432 245677788888887777766654421 1345666666654 110 10
Q ss_pred -ccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 -AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 -~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
......-++++-.+++. .+....+++.+.+...||+.+++-+.
T Consensus 153 gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 153 GFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred CCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 11123446666666544 56688899999998889998877543
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.1 Score=37.75 Aligned_cols=99 Identities=16% Similarity=0.092 Sum_probs=56.7
Q ss_pred CeEEEeCCCc--cHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~--G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++|+=+|||. |+++..+++.|.+|++++- .+-++..++ .+++.... . .....+ ..... .....
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~---~~Gl~i~~--~----g~~~~~-~~~~~----~~~~~ 68 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQ---AGGLTLVE--Q----GQASLY-AIPAE----TADAA 68 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhh---cCCeEEee--C----Ccceee-ccCCC----Ccccc
Confidence 5799999997 5788888888999999986 344444433 12221110 0 000111 10000 11123
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.+||+|+.+==-| +....++.+..++.+++.++...
T Consensus 69 ~~~D~viv~vK~~---~~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 69 EPIHRLLLACKAY---DAEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred cccCEEEEECCHH---hHHHHHHHHHhhCCCCCEEEEEe
Confidence 5899998752222 35667778888888888765543
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.51 Score=40.98 Aligned_cols=42 Identities=31% Similarity=0.374 Sum_probs=31.3
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~ 103 (221)
..++.+||.+|||+ |...+.+|+ .|+ +|+++|. ++.++.+++
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS 227 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 34678999999987 877777775 476 5999986 556666664
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.8 Score=36.19 Aligned_cols=96 Identities=22% Similarity=0.298 Sum_probs=53.3
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCce-EEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSI-QAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v-~~~~~dw~~~~~ 137 (221)
...+.+||..|+|. |...+.+|+ +|.+|++++. ++..+.+++ .+. +.+ .....++....
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~------------~~~~~~~~~~~~~~~- 225 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGA------------DEVLNSLDDSPKDKK- 225 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC------------CEEEcCCCcCHHHHH-
Confidence 34567888888874 777666665 6889989886 444444432 221 000 00000000000
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.......+|+|+-+ .. ....+..+.+.|+++|.++..
T Consensus 226 ~~~~~~~~D~vid~--~g----~~~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 226 AAGLGGGFDVIFDF--VG----TQPTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred HHhcCCCceEEEEC--CC----CHHHHHHHHHHhhcCCEEEEE
Confidence 01124578988843 21 134667778889999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.26 E-value=1.5 Score=39.80 Aligned_cols=40 Identities=35% Similarity=0.485 Sum_probs=30.4
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~ 102 (221)
.++.+||=+|||. |+.++.+++ +|++|++.|. ++.++.++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~ 204 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 204 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4568999999997 888877664 6999999997 44544444
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.51 Score=41.16 Aligned_cols=75 Identities=23% Similarity=0.357 Sum_probs=47.8
Q ss_pred CeEEEeCCCc-cHHHH-HHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 66 KRVIELGAGC-GVAGF-GMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 66 ~~vLelGcG~-G~~~l-~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++||=||||. |.... -+|+.+ .+|+..|- .+....+..+. ..+++...+|..+.+.+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----------------~~~v~~~~vD~~d~~al~~l 65 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----------------GGKVEALQVDAADVDALVAL 65 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----------------cccceeEEecccChHHHHHH
Confidence 5799999975 54332 335556 68999996 34444333221 13678888888777655444
Q ss_pred CCCccEEEEcccccC
Q 027594 142 APPFDYIIGTDVVYA 156 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~ 156 (221)
-..+|+||..-+.|.
T Consensus 66 i~~~d~VIn~~p~~~ 80 (389)
T COG1748 66 IKDFDLVINAAPPFV 80 (389)
T ss_pred HhcCCEEEEeCCchh
Confidence 566799998766553
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.58 E-value=2.9 Score=34.44 Aligned_cols=96 Identities=19% Similarity=0.179 Sum_probs=52.2
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+||=+|+|+ |+.++.+|+ +|++ |+++|. ++-++.+++ .+.. .-+..... .......
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~-----------~~i~~~~~-~~~~~~~ 182 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT-----------ALAEPEVL-AERQGGL 182 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc-----------EecCchhh-HHHHHHH
Confidence 3788999999886 777666665 5876 888885 444444433 1210 00000000 0000000
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.....+|+|+-+ . -....+....++++++|++++..
T Consensus 183 -~~~~g~d~vid~--~----G~~~~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 183 -QNGRGVDVALEF--S----GATAAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred -hCCCCCCEEEEC--C----CChHHHHHHHHHhcCCCEEEEec
Confidence 112468888743 1 12345666678889999987644
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=4 Score=32.31 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=43.7
Q ss_pred CCCeEEEeCCCccHHHH---HHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGF---GMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l---~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++||=.|++.|+-.. .+++.|++|++++. ++..+.+...+... .++.+...|+.+.....
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dl~~~~~~~ 69 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------------GNIHYVVGDVSSTESAR 69 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCeEEEECCCCCHHHHH
Confidence 57899999987543222 23346899999986 43443332222211 24566677776654221
Q ss_pred -------ccCCCccEEEEccccc
Q 027594 140 -------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 140 -------~~~~~fD~Vi~~d~~y 155 (221)
..-.+.|.++.+-..+
T Consensus 70 ~~~~~~~~~~~~id~ii~~ag~~ 92 (238)
T PRK05786 70 NVIEKAAKVLNAIDGLVVTVGGY 92 (238)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCc
Confidence 1123568887665444
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=89.98 E-value=0.55 Score=38.22 Aligned_cols=45 Identities=27% Similarity=0.269 Sum_probs=30.8
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI 95 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~ 95 (221)
.|+.+|.+.+ |.. +..+++|+-||+|.+++.+...+.+|+.-|+.
T Consensus 7 ~l~~~I~~~i------p~~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~ 51 (260)
T PF02086_consen 7 KLAKWIIELI------PKN-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDIN 51 (260)
T ss_dssp GGHHHHHHHS-------S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-
T ss_pred HHHHHHHHHc------CCC-CCCEEEEEecchhHHHHHhcccccceeeeech
Confidence 4566777664 222 67899999999999999998888899999973
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.90 E-value=3 Score=35.28 Aligned_cols=89 Identities=17% Similarity=0.046 Sum_probs=52.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..+|.+||=.|+|. |..++.+|+ +|++|++++. ++-.+.+++ .+. +. +... .+.
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga------------~~--vi~~--~~~--- 219 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGA------------AS--AGGA--YDT--- 219 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCC------------ce--eccc--ccc---
Confidence 34688999999875 666665654 5889988885 444444443 221 11 1110 000
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..+.+|+++-.+.. ...+....++++++|++++..
T Consensus 220 --~~~~~d~~i~~~~~------~~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 220 --PPEPLDAAILFAPA------GGLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred --CcccceEEEECCCc------HHHHHHHHHhhCCCcEEEEEe
Confidence 12357877655442 245666778899999987644
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.87 Score=38.97 Aligned_cols=99 Identities=19% Similarity=0.137 Sum_probs=52.7
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+||=.|||. |..++.+|+ .|++ |+++|. ++-.+.+++ .+.. .-+.....+|.....
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga~-----------~~i~~~~~~~~~~i~ 238 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGAT-----------HTVNSSGTDPVEAIR 238 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc-----------eEEcCCCcCHHHHHH
Confidence 34678999999875 777776665 5875 999986 444454432 2210 001111111110000
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.......+|+|+ |+.-. ...+....++++++|++++..
T Consensus 239 ~~~~~~g~d~vi--d~~g~----~~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 239 ALTGGFGADVVI--DAVGR----PETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred HHhCCCCCCEEE--ECCCC----HHHHHHHHHHhccCCEEEEEC
Confidence 001124689888 34332 234455567889999877643
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=1.9 Score=36.41 Aligned_cols=98 Identities=20% Similarity=0.218 Sum_probs=55.1
Q ss_pred CCeEEEeCCCc--cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 65 GKRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 65 ~~~vLelGcG~--G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
.++|+=+|+|. |.++..+++.|.+|++..... .+. +..+++.... . .+...+......... ...
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~----~~~~g~~~~~--~----~~~~~~~~~~~~~~~---~~~ 70 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEA----VRENGLQVDS--V----HGDFHLPPVQAYRSA---EDM 70 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHH----HHhCCeEEEe--C----CCCeeecCceEEcch---hhc
Confidence 36899999997 567888888899998887532 222 2334432110 0 011111111111111 123
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
..+|+|+.+=..|. ...+++.+..++++++.++.
T Consensus 71 ~~~D~vilavK~~~---~~~~~~~l~~~~~~~~~iv~ 104 (313)
T PRK06249 71 PPCDWVLVGLKTTA---NALLAPLIPQVAAPDAKVLL 104 (313)
T ss_pred CCCCEEEEEecCCC---hHhHHHHHhhhcCCCCEEEE
Confidence 57999988744443 35677778888888887554
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=89.81 E-value=1.2 Score=35.97 Aligned_cols=59 Identities=15% Similarity=0.366 Sum_probs=38.1
Q ss_pred cCCCccEEEEcccccC------C---------cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeE
Q 027594 141 VAPPFDYIIGTDVVYA------E---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV 202 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~------~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v 202 (221)
+++++|+|+.++|+.. . +-...++..+.++|||||.+++....+.. ..+...++ .+|.+
T Consensus 17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~---~~~~~al~~~GF~l 91 (227)
T PRK13699 17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRV---DRFMAAWKNAGFSV 91 (227)
T ss_pred CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccH---HHHHHHHHHCCCEE
Confidence 4678999998888641 0 11356778888999999988775443322 33444443 46765
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.73 E-value=3.9 Score=34.58 Aligned_cols=99 Identities=26% Similarity=0.321 Sum_probs=59.2
Q ss_pred CeEEEeCCCc--cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~--G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
++|+=+|||. |+++..+++.|..|+++-.++-++..+++ ++.+.... .+...... .........
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~~------~~~~~~~~----~~~~~~~~~ 66 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDEG------GNFTTPVV----AATDAEALG 66 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecCC------Cccccccc----cccChhhcC
Confidence 4788899997 57888899999667777655445555543 43221100 00011110 011112245
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
++|+||..- -....+..++.+..++++...+++..
T Consensus 67 ~~Dlviv~v---Ka~q~~~al~~l~~~~~~~t~vl~lq 101 (307)
T COG1893 67 PADLVIVTV---KAYQLEEALPSLAPLLGPNTVVLFLQ 101 (307)
T ss_pred CCCEEEEEe---ccccHHHHHHHhhhcCCCCcEEEEEe
Confidence 899998763 33457788889999999998876644
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.3 Score=34.84 Aligned_cols=57 Identities=19% Similarity=0.283 Sum_probs=33.7
Q ss_pred ccEEEEcccccCCcC-------------------HHHHHHHHHHhcCCCeEEEEEEEecChh--HHHHHHHHHhcCCeE
Q 027594 145 FDYIIGTDVVYAEHL-------------------LEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQMLQMWKSNFNV 202 (221)
Q Consensus 145 fD~Vi~~d~~y~~~~-------------------~~~l~~~~~~ll~~~g~~~i~~~~r~~~--~~~~~~~~~~~~f~v 202 (221)
.|+|+.++|+..... +..++..+.++|+|+|.+++....+... ......+.++ +|.+
T Consensus 1 VdliitDPPY~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g-~~~~ 78 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNNYFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG-GFFL 78 (231)
T ss_dssp EEEEEE---TSSSCS-----CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT-T-EE
T ss_pred CCEEEECCCCCCCCCcchhhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh-hhhe
Confidence 377887777654333 5667888899999999998876665544 2333344444 3544
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=88.90 E-value=1.5 Score=37.81 Aligned_cols=41 Identities=27% Similarity=0.400 Sum_probs=28.4
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~ 102 (221)
..++.+||=+|+|. |..++.+|+ +|+ +|+++|. ++-++.++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 34678888899875 766666665 588 5999986 44444443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=88.51 E-value=1 Score=32.31 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=25.6
Q ss_pred CeEEEeCCCcc-HHHHHHHHhCCEEEEecchh
Q 027594 66 KRVIELGAGCG-VAGFGMALLGCNVITTDQIE 96 (221)
Q Consensus 66 ~~vLelGcG~G-~~~l~~a~~ga~v~~~D~~~ 96 (221)
.+|.|+|-|-= -.+-.++++|..|++||+.+
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~ 46 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINE 46 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEeccc
Confidence 39999998863 46777888999999999854
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=88.46 E-value=9.5 Score=29.18 Aligned_cols=46 Identities=20% Similarity=0.141 Sum_probs=35.4
Q ss_pred cCCCccEEEEcccccC-------------CcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 141 VAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~-------------~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
...+||.|+-+-|-.. ...+..++..+.++|+++|.+.|+.....+
T Consensus 72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 3578999998866443 235667888888899999999998877655
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=88.43 E-value=10 Score=30.39 Aligned_cols=103 Identities=14% Similarity=0.174 Sum_probs=53.9
Q ss_pred CCCeEEEeCCCcc----HHHHHHHHh--CCEEEEec-chhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCG----VAGFGMALL--GCNVITTD-QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G----~~~l~~a~~--ga~v~~~D-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.-+.++|..|+.| .++|++|.. |.+++++- ..+.+...++.+...+. .+.+.++. ++..
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----------~~~vEfvv---g~~~ 106 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----------SDVVEFVV---GEAP 106 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----------cccceEEe---cCCH
Confidence 3468999976643 234444432 66655554 34455555555554443 23455554 4322
Q ss_pred -CccccCCCccEEEEcccccCCcCHH-HHHHHHHHhcCCCeEEEEEEEecC
Q 027594 137 -HIKAVAPPFDYIIGTDVVYAEHLLE-PLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 137 -~~~~~~~~fD~Vi~~d~~y~~~~~~-~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.....-...|+++.. + ...+.. .+++.+. +.|.|.+++++...+
T Consensus 107 e~~~~~~~~iDF~vVD-c--~~~d~~~~vl~~~~--~~~~GaVVV~~Na~~ 152 (218)
T PF07279_consen 107 EEVMPGLKGIDFVVVD-C--KREDFAARVLRAAK--LSPRGAVVVCYNAFS 152 (218)
T ss_pred HHHHhhccCCCEEEEe-C--CchhHHHHHHHHhc--cCCCceEEEEecccc
Confidence 111223568888753 3 223333 5555433 567888888765433
|
The function of this family is unknown. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.16 E-value=3.4 Score=35.35 Aligned_cols=41 Identities=32% Similarity=0.373 Sum_probs=28.6
Q ss_pred CCCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027594 62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 62 ~~~~~~vLelGc-G-~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~ 102 (221)
..+|.+||=.|+ | .|..++.+|+ +|++|++++. ++-.+.++
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 346889999998 4 3777777765 5899988875 44444443
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=88.02 E-value=0.22 Score=35.34 Aligned_cols=39 Identities=21% Similarity=0.393 Sum_probs=29.3
Q ss_pred CccEEEEccccc------CCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 144 PFDYIIGTDVVY------AEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 144 ~fD~Vi~~d~~y------~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+||+|++-.+.= ..+-+..+++.+.++|+|||.+++-.+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ 45 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ 45 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence 489999877743 245688899999999999999988654
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.93 E-value=0.22 Score=35.90 Aligned_cols=83 Identities=27% Similarity=0.322 Sum_probs=51.3
Q ss_pred CccHHHHHHHH-hCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC---c-c-ccCCCcc
Q 027594 74 GCGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---I-K-AVAPPFD 146 (221)
Q Consensus 74 G~G~~~l~~a~-~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~---~-~-~~~~~fD 146 (221)
|.|+.++.+|+ .|++|+++|.. +-++.+++ .+. -. ..+..+.+. + . .....+|
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga--------------~~--~~~~~~~~~~~~i~~~~~~~~~d 60 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGA--------------DH--VIDYSDDDFVEQIRELTGGRGVD 60 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTE--------------SE--EEETTTSSHHHHHHHHTTTSSEE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hcc--------------cc--cccccccccccccccccccccce
Confidence 56888888875 58999999974 45555553 221 01 123333211 1 1 1124799
Q ss_pred EEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 147 YIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 147 ~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+|+-+ ......+.....+++++|++.+...
T Consensus 61 ~vid~------~g~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 61 VVIDC------VGSGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp EEEES------SSSHHHHHHHHHHEEEEEEEEEESS
T ss_pred EEEEe------cCcHHHHHHHHHHhccCCEEEEEEc
Confidence 99854 2235778888899999999877543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted | Back alignment and domain information |
|---|
Probab=87.82 E-value=1.6 Score=35.72 Aligned_cols=113 Identities=10% Similarity=0.054 Sum_probs=64.2
Q ss_pred eCCCccHHHHHHH--HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC-CCccccCCCcc
Q 027594 71 LGAGCGVAGFGMA--LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DHIKAVAPPFD 146 (221)
Q Consensus 71 lGcG~G~~~l~~a--~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~-~~~~~~~~~fD 146 (221)
+..-.|.+.++.. +..-+.++.|. +.-.+.++.|+... .++++...|=-.. .....+..+--
T Consensus 62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--------------~~v~v~~~DG~~~l~allPP~~rRg 127 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD--------------RRVRVHHRDGYEGLKALLPPPERRG 127 (245)
T ss_dssp --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT--------------S-EEEE-S-HHHHHHHH-S-TTS-E
T ss_pred cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC--------------CccEEEeCchhhhhhhhCCCCCCCe
Confidence 4445566666655 44557999997 77788888776652 3566665221000 00111233445
Q ss_pred EEEEcccccCCcCHHHHHHHHHHhcC--CCeEEEEEEEecChhHHHHHHHHHh
Q 027594 147 YIIGTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWK 197 (221)
Q Consensus 147 ~Vi~~d~~y~~~~~~~l~~~~~~ll~--~~g~~~i~~~~r~~~~~~~~~~~~~ 197 (221)
+|+..+++-..++...++..+.+.++ +.|++.|-++.......+.|.+.++
T Consensus 128 lVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~ 180 (245)
T PF04378_consen 128 LVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALK 180 (245)
T ss_dssp EEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHH
Confidence 67766666668889999999999987 8999999999877766677776664
|
; PDB: 2OO3_A. |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=87.73 E-value=0.9 Score=38.54 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=31.6
Q ss_pred EEEeCCCccHHHHHHHHhCCEE-EEecc-hhhHHHHHHHH
Q 027594 68 VIELGAGCGVAGFGMALLGCNV-ITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 68 vLelGcG~G~~~l~~a~~ga~v-~~~D~-~~~l~~~~~n~ 105 (221)
|+||.||.|.+++.+.+.|.++ .+.|. +.+.+..+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence 6899999999999999999985 56898 45777777764
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=87.62 E-value=3.2 Score=35.02 Aligned_cols=40 Identities=35% Similarity=0.434 Sum_probs=27.4
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL 101 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~ 101 (221)
..+|.+||=+|+|. |..++.+|+ +|++ |+++|. ++-.+.+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~ 204 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELA 204 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 34688999999875 666666664 5888 999986 4444443
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=87.43 E-value=3.7 Score=32.88 Aligned_cols=94 Identities=28% Similarity=0.284 Sum_probs=52.9
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~- 138 (221)
.++.+||-.|+|+ |...+.+++ .|.+|++++. ++..+.++. .+. .. + ++.......
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~----~g~------------~~--~--~~~~~~~~~~ 192 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE----LGA------------DH--V--IDYKEEDLEE 192 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----hCC------------ce--e--ccCCcCCHHH
Confidence 4678999999996 555554554 5888999986 344444432 111 00 0 111111100
Q ss_pred ---cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 ---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ---~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
......+|+++.+-. . ...+..+.+.++++|.++....
T Consensus 193 ~~~~~~~~~~d~vi~~~~--~----~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 193 ELRLTGGGGADVVIDAVG--G----PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred HHHHhcCCCCCEEEECCC--C----HHHHHHHHHhcccCCEEEEEcc
Confidence 112457999986421 1 1456666778889999876543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.21 E-value=1.8 Score=33.49 Aligned_cols=104 Identities=21% Similarity=0.226 Sum_probs=54.8
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCC-----CCCCceEEEEEEecCCCCc
Q 027594 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 67 ~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~v~~~~~dw~~~~~~ 138 (221)
+|-=+|+|+ | -++..++..|.+|++.|. ++.++.+++.++.+.........-+ ....++++.. . .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~-----d--l 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTT-----D--L 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEES-----S--G
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccccc-----C--H
Confidence 356689987 5 467777788999999997 5677777776665221110000000 0012333221 1 1
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.... ..|+|+=+= .-..+.-..+++.+.+++.|+..+.-
T Consensus 74 ~~~~-~adlViEai-~E~l~~K~~~~~~l~~~~~~~~ilas 112 (180)
T PF02737_consen 74 EEAV-DADLVIEAI-PEDLELKQELFAELDEICPPDTILAS 112 (180)
T ss_dssp GGGC-TESEEEE-S--SSHHHHHHHHHHHHCCS-TTSEEEE
T ss_pred HHHh-hhheehhhc-cccHHHHHHHHHHHHHHhCCCceEEe
Confidence 1122 678888542 12344456688888888877766443
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.05 E-value=11 Score=31.11 Aligned_cols=113 Identities=14% Similarity=0.078 Sum_probs=62.8
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCC--EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 63 LKGKRVIELGAGCGVAGFGM----ALLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~----a~~ga--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..+...+|||+|+.-=+-.+ +..|. .++.+|++. .++...+.+..... .-.+.....|....
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-----------~l~v~~l~~~~~~~ 145 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-----------GLEVNALCGDYELA 145 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-----------CCeEeehhhhHHHH
Confidence 35789999999997544333 33443 588999854 55544444443321 11233333232221
Q ss_pred CCccccCCCccEEEEccccc--CCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 136 DHIKAVAPPFDYIIGTDVVY--AEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 136 ~~~~~~~~~fD~Vi~~d~~y--~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
-.......+-=.++....+- .+.....++..+...++||-.+++....+.+
T Consensus 146 La~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~ 198 (321)
T COG4301 146 LAELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP 198 (321)
T ss_pred HhcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence 11111111122233333333 3667788999999999999999997665553
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.82 E-value=14 Score=29.60 Aligned_cols=80 Identities=18% Similarity=0.276 Sum_probs=48.3
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+- +..+++.|++|++++. ++.++.+...++..+ .++.+..+|..+...
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~ 74 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-------------GAAEALAFDIADEEA 74 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCHHH
Confidence 46789999999766542 2233456999999986 444544444444332 346677777766543
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ..-.+.|.|+.+...
T Consensus 75 ~~~~~~~~~~~~~~id~vi~~ag~ 98 (256)
T PRK06124 75 VAAAFARIDAEHGRLDILVNNVGA 98 (256)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 21 112467999877543
|
|
| >PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein | Back alignment and domain information |
|---|
Probab=86.59 E-value=8 Score=31.94 Aligned_cols=123 Identities=21% Similarity=0.245 Sum_probs=56.4
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCc--cH-HHHHHHHh----CCEEEEecchhhHHHHHHHHHHhhhccccCC
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC--GV-AGFGMALL----GCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~--G~-~~l~~a~~----ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
.|.+||.... .....++|||-||+|+ |. +|-...++ |+-++-.|+.+-+.
T Consensus 47 QLCqYln~~t------laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS----------------- 103 (299)
T PF06460_consen 47 QLCQYLNKTT------LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS----------------- 103 (299)
T ss_dssp HHHHHHTTS-----------TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B------------------
T ss_pred HHHHHhcccc------EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc-----------------
Confidence 4666774421 1233578999999998 63 55555443 55566666533111
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC-------------CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~-------------~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..... .. ++.... ..+.+||+||+ |+ |. ..-..-+...++.-|+-||.+.+=...
T Consensus 104 -----Da~~~-~~---~Dc~t~-~~~~k~DlIiS-Dm-Yd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE 171 (299)
T PF06460_consen 104 -----DADQS-IV---GDCRTY-MPPDKFDLIIS-DM-YDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITE 171 (299)
T ss_dssp -----SSSEE-EE---S-GGGE-EESS-EEEEEE------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-S
T ss_pred -----ccCCc-ee---cccccc-CCCCcccEEEE-ec-ccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeec
Confidence 01112 22 221111 23679999996 55 41 122445666667778889998875555
Q ss_pred cChhHHHHHHHHHhcCCeEEE
Q 027594 184 RSTSVHEQMLQMWKSNFNVKL 204 (221)
Q Consensus 184 r~~~~~~~~~~~~~~~f~v~~ 204 (221)
.+.. .++ ..+...|..++
T Consensus 172 ~Sw~--~~L-yel~~~F~~wt 189 (299)
T PF06460_consen 172 HSWN--AQL-YELMGYFSWWT 189 (299)
T ss_dssp SS----HHH-HHHHTTEEEEE
T ss_pred cccc--HHH-HHHHhhcccEE
Confidence 4432 333 33445555443
|
This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A. |
| >COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=86.39 E-value=0.98 Score=37.20 Aligned_cols=52 Identities=23% Similarity=0.324 Sum_probs=38.9
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchh
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE 96 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~ 96 (221)
..|..|+...... .+..+.+|+.+.||-+|||++|-.+-+.|-+|++-|+..
T Consensus 8 ~~LlsFi~~~i~~--~~k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ 59 (330)
T COG3392 8 YKLLSFIKENIHE--VKKEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEY 59 (330)
T ss_pred HHHHHHHHHHHHH--HhhcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHH
Confidence 3455565544211 113567889999999999999999999999999999743
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=86.26 E-value=5.3 Score=29.46 Aligned_cols=98 Identities=23% Similarity=0.231 Sum_probs=51.5
Q ss_pred EEEeCCCc-c-HHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCc
Q 027594 68 VIELGAGC-G-VAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF 145 (221)
Q Consensus 68 vLelGcG~-G-~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~f 145 (221)
|+=+|+|. | +++-.+++.|.+|++++-+.-++. +..+++...... ....+.... .+... .....+|
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~----~~~~g~~~~~~~----~~~~~~~~~-~~~~~---~~~~~~~ 68 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEA----IKEQGLTITGPD----GDETVQPPI-VISAP---SADAGPY 68 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHH----HHHHCEEEEETT----EEEEEEEEE-EESSH---GHHHSTE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHh----hhheeEEEEecc----cceeccccc-ccCcc---hhccCCC
Confidence 34567775 3 345555566889999986542222 333343211000 001111111 11111 1235789
Q ss_pred cEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 146 DYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 146 D~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
|+||.+- -....+..++.+...+++++.+++.
T Consensus 69 D~viv~v---Ka~~~~~~l~~l~~~~~~~t~iv~~ 100 (151)
T PF02558_consen 69 DLVIVAV---KAYQLEQALQSLKPYLDPNTTIVSL 100 (151)
T ss_dssp SEEEE-S---SGGGHHHHHHHHCTGEETTEEEEEE
T ss_pred cEEEEEe---cccchHHHHHHHhhccCCCcEEEEE
Confidence 9999872 2334677888888999999776553
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.17 E-value=5.2 Score=31.69 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=22.5
Q ss_pred CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 157 EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 157 ~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
......+-..+.+.|||||.+++..+.
T Consensus 142 ~~~A~~vna~vf~~LKPGGv~~V~dH~ 168 (238)
T COG4798 142 PATAAKVNAAVFKALKPGGVYLVEDHR 168 (238)
T ss_pred cchHHHHHHHHHHhcCCCcEEEEEecc
Confidence 566788889999999999998886653
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.90 E-value=3.4 Score=35.46 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=24.5
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ 94 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~ 94 (221)
.+|.+||=.|+|. |..++.+|+ +|++|++++.
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~ 215 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS 215 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 3677888899986 777777765 5889888774
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.87 E-value=1.7 Score=37.69 Aligned_cols=31 Identities=23% Similarity=0.324 Sum_probs=27.0
Q ss_pred CeEEEeCCCccHHHHHHH-HhCCEEEEecchh
Q 027594 66 KRVIELGAGCGVAGFGMA-LLGCNVITTDQIE 96 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a-~~ga~v~~~D~~~ 96 (221)
+.|+|+|+|.|.++-.++ ..|.+|.++|.+.
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq 186 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ 186 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence 479999999999999887 4688999999764
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=85.80 E-value=1.4 Score=35.24 Aligned_cols=44 Identities=18% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCCeEEEeCCCccHHHHHHHH-hC---CEEEEecc-hhhHHHHHHHHHH
Q 027594 64 KGKRVIELGAGCGVAGFGMAL-LG---CNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~-~g---a~v~~~D~-~~~l~~~~~n~~~ 107 (221)
..-++-|=.||.|.+--.+.. ++ ..|+++|+ +++++++++|+..
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 345899999999965444443 33 25999998 5699999999864
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.41 E-value=3.3 Score=33.71 Aligned_cols=80 Identities=15% Similarity=0.148 Sum_probs=48.3
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+.... ..++.+...|..+...
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~~~ 72 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES------------NVDVSYIVADLTKRED 72 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHH
Confidence 3578899999987764 34445567999999986 344444444433221 1346677777766543
Q ss_pred cc------ccCCCccEEEEccc
Q 027594 138 IK------AVAPPFDYIIGTDV 153 (221)
Q Consensus 138 ~~------~~~~~fD~Vi~~d~ 153 (221)
.. ....+.|+++.+--
T Consensus 73 i~~~~~~~~~~g~iD~lv~nag 94 (263)
T PRK08339 73 LERTVKELKNIGEPDIFFFSTG 94 (263)
T ss_pred HHHHHHHHHhhCCCcEEEECCC
Confidence 21 01246898887643
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.33 E-value=3.7 Score=33.05 Aligned_cols=80 Identities=20% Similarity=0.310 Sum_probs=47.8
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+...+ .++.....|..+....
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~~~~ 73 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-------------GKVVPVCCDVSQHQQV 73 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CeEEEEEccCCCHHHH
Confidence 578899999987664 33344567999999986 344444443333221 3456666666554332
Q ss_pred c-------ccCCCccEEEEccccc
Q 027594 139 K-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~y 155 (221)
. ....+.|+++.+.-+.
T Consensus 74 ~~~~~~~~~~~g~id~lv~~ag~~ 97 (253)
T PRK05867 74 TSMLDQVTAELGGIDIAVCNAGII 97 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCC
Confidence 1 1124789998875543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=85.06 E-value=1.8 Score=37.55 Aligned_cols=32 Identities=31% Similarity=0.393 Sum_probs=24.1
Q ss_pred CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc
Q 027594 63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ 94 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a-~~ga~v~~~D~ 94 (221)
.++.+|+=+|+|. |..++..+ .+|++|+++|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~ 198 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDI 198 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 3567899999985 66666554 46999999996
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.83 E-value=6 Score=31.45 Aligned_cols=80 Identities=23% Similarity=0.259 Sum_probs=46.6
Q ss_pred CCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~----a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+++||=.|++ |.+|..+ ++.|++|++++. ++.+..+...+...+ .++.+...|+.+...
T Consensus 4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~~~ 69 (251)
T PRK12826 4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-------------GKARARQVDVRDRAA 69 (251)
T ss_pred CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEECCCCCHHH
Confidence 467899988875 4444443 456889999885 333333333333222 346777777766533
Q ss_pred ccc-------cCCCccEEEEcccccC
Q 027594 138 IKA-------VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 138 ~~~-------~~~~fD~Vi~~d~~y~ 156 (221)
... ...++|+|+.+...+.
T Consensus 70 ~~~~~~~~~~~~~~~d~vi~~ag~~~ 95 (251)
T PRK12826 70 LKAAVAAGVEDFGRLDILVANAGIFP 95 (251)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 211 1136899988765443
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.77 E-value=5.7 Score=33.38 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=49.7
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.+.+++++|=.|++.|+ ++..+++.|++|++++. .+..+.+...+..... ..++.+..+|..+..
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-----------~~~v~~~~~Dl~d~~ 78 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP-----------DAKLSLRALDLSSLA 78 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCceEEEEecCCCHH
Confidence 34678999999987764 33344567999988875 3333333333332211 235777787876654
Q ss_pred Ccc-------ccCCCccEEEEcccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~ 154 (221)
... ....+.|++|.+--+
T Consensus 79 sv~~~~~~~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 79 SVAALGEQLRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHHHHHHHHHhCCCccEEEECCcc
Confidence 321 123568999877543
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.76 E-value=3 Score=35.40 Aligned_cols=40 Identities=40% Similarity=0.559 Sum_probs=27.8
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL 101 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~ 101 (221)
..++.+||=+|||+ |..++.+|+ +|++ |+++|. ++-.+.+
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 201 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA 201 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 34678999999876 777766664 5887 788885 4444444
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=84.70 E-value=6.7 Score=31.76 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEecch
Q 027594 63 LKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQI 95 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~-~~l~~a~~ga-~v~~~D~~ 95 (221)
+++.+||=+|||. |. .+..+++.|. +++.+|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4668999999995 54 5556677786 69999853
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.67 E-value=10 Score=31.43 Aligned_cols=41 Identities=34% Similarity=0.405 Sum_probs=29.3
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHH
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE 106 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~ 106 (221)
++|.=||+|+ | .++..++..|.+|++.|. ++.++.++.++.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~ 47 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIA 47 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 3677889986 4 345556677889999997 557777766554
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.67 E-value=3.6 Score=35.07 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=49.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++++||=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+...+ .++.+...|..+.+..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~d~~~v 71 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG-------------AEVLVVPTDVTDADQV 71 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHH
Confidence 467899999986654 33345567999999886 445555555554432 3466677777665432
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....++|++|.+--+
T Consensus 72 ~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 72 KALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 1 112578999887543
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.23 E-value=18 Score=29.89 Aligned_cols=86 Identities=19% Similarity=0.220 Sum_probs=56.4
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
+..+.++.+|-=|...|+ .+..+++.|++|+.++. ++.++.+..-+...+.. ..++.....|..+.
T Consensus 3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~----------~~~~~~~~~Dv~~~ 72 (270)
T KOG0725|consen 3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYT----------GGKVLAIVCDVSKE 72 (270)
T ss_pred CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC----------CCeeEEEECcCCCH
Confidence 356789999999988874 56677889999999996 55666665555443321 24566666666544
Q ss_pred CCc--------cccCCCccEEEEccccc
Q 027594 136 DHI--------KAVAPPFDYIIGTDVVY 155 (221)
Q Consensus 136 ~~~--------~~~~~~fD~Vi~~d~~y 155 (221)
+.. .....+.|+++.|.-.-
T Consensus 73 ~~~~~l~~~~~~~~~GkidiLvnnag~~ 100 (270)
T KOG0725|consen 73 VDVEKLVEFAVEKFFGKIDILVNNAGAL 100 (270)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEcCCcC
Confidence 321 11146789998775443
|
|
| >PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins [] | Back alignment and domain information |
|---|
Probab=84.15 E-value=3.4 Score=31.30 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=55.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..+.|++||=+|.=.-.+...+...+.+|++...........+ .. .++.+. .+. ..+
T Consensus 9 ~~f~~k~vL~~g~~~D~~~~~L~~~~~~v~~~~~~~~~~~~~~---~~--------------~~~~~~---f~~--~~~- 65 (155)
T PF08468_consen 9 DLFEGKSVLFAGDPQDDLPAQLPAIAVSVHVFSYHHWYALQKQ---AQ--------------SNVQFH---FGA--ELP- 65 (155)
T ss_dssp HHHTT-EEEEEE---SSHHHHS--SEEEEEESBHHHHHHHHHH---HG--------------GGEEE----SS----HH-
T ss_pred HHHCCCeEEEEcCCchhhHHHhhhcCCEEEEEEchHHHHHhHh---cc--------------cCceEe---eec--cCC-
Confidence 5678889999886655555555555556666553221111111 11 123322 111 111
Q ss_pred cCCCccEEEEcccccCCcC---HHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~---~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v 205 (221)
....||.||. |.+.. ..-++..+...|++|+.++++..+|..- +...++++..-.+..+
T Consensus 66 ~~~~~D~vvl----y~PKaK~e~~~lL~~l~~~L~~g~~i~vVGEnk~GI--kSa~K~L~~~~~~~Ki 127 (155)
T PF08468_consen 66 ADQDFDTVVL----YWPKAKAEAQYLLANLLSHLPPGTEIFVVGENKGGI--KSAEKQLAPYGKINKI 127 (155)
T ss_dssp HHTT-SEEEE----E--SSHHHHHHHHHHHHTTS-TT-EEEEEEEGGGTG--GGHHHHHTTTS--EEE
T ss_pred cccCCCEEEE----EccCcHHHHHHHHHHHHHhCCCCCEEEEEecCcccH--HHHHHHHHhhCCccee
Confidence 1357999985 66554 4446677777789999999999988752 3333444433344433
|
; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A. |
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.09 E-value=3.5 Score=33.29 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=48.4
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+..... ..++.+...|..+....
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~~ 73 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA-----------GARVLAVPADVTDAASV 73 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC-----------CceEEEEEccCCCHHHH
Confidence 467899999987654 33344567999999986 4444444444433111 23566777777665432
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+++.+.-+
T Consensus 74 ~~~~~~~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 74 AAAVAAAEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHHHHHHHhCCCcEEEECCCc
Confidence 1 112468999877543
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=83.99 E-value=13 Score=29.36 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=26.3
Q ss_pred CCCCCeEEEeCCCc-c-HHHHHHHHhCC-EEEEecch
Q 027594 62 KLKGKRVIELGAGC-G-VAGFGMALLGC-NVITTDQI 95 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G-~~~l~~a~~ga-~v~~~D~~ 95 (221)
..+.++|+=+|||. | .++..+++.|. +++..|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34678999999996 5 46667788887 59999854
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.67 E-value=15 Score=31.14 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=48.9
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++++||=.|++.|+- +..+++.|++|++++. ++.++.+.+.+...+ .++.+...|..+...
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g-------------~~~~~v~~Dv~d~~~ 71 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG-------------GEALAVVADVADAEA 71 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEecCCCHHH
Confidence 35678999999766542 3334567999999886 445555554444322 356667777766543
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ..-.+.|++|.+--.
T Consensus 72 v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 72 VQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHCCCCCEEEECCCc
Confidence 21 112478999877543
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.61 E-value=3.6 Score=33.22 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=46.0
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++++||=.|++.|+- +..+++.|++|++++..+..+.+.+.+... ..++.+...|..+....
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i 78 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE-------------GRKVTFVQVDLTKPESA 78 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence 45789999999987643 333456799988887543233333322221 13466677776654432
Q ss_pred c-------ccCCCccEEEEccc
Q 027594 139 K-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~ 153 (221)
. ....+.|+++.+.-
T Consensus 79 ~~~~~~~~~~~g~id~li~~ag 100 (258)
T PRK06935 79 EKVVKEALEEFGKIDILVNNAG 100 (258)
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 1 11246799887654
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.54 E-value=8.6 Score=31.87 Aligned_cols=79 Identities=22% Similarity=0.168 Sum_probs=45.0
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch--hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~--~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+++++|=.|++.|+ ++..+++.|++|++++.. ..++.....++.. ..++.+...|..+..
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~ 109 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE-------------GVKCLLIPGDVSDEA 109 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------------CCeEEEEEccCCCHH
Confidence 4568899999987654 333445679999888752 2233332222221 134666777766543
Q ss_pred Ccc-------ccCCCccEEEEccc
Q 027594 137 HIK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~ 153 (221)
... ....+.|+||.+-.
T Consensus 110 ~~~~~~~~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 110 FCKDAVEETVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCc
Confidence 321 11246798886644
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.52 E-value=4.9 Score=33.56 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=55.7
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC-----CCCceEEEEEEecCCCCc
Q 027594 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 67 ~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~~dw~~~~~~ 138 (221)
+|-=||+|+ | -++..++..|.+|+..|. ++.++.++..+..+.........-+. ...++++.. + .
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~-~------~ 79 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT-D------L 79 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC-C------H
Confidence 788899997 4 456667788999999997 66777766665543211100000000 011222211 1 1
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhc-CCCeEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTI 177 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll-~~~g~~ 177 (221)
. .-...|+|+-+ +.-..+.-..++..+.+++ +|+..+
T Consensus 80 ~-~~~~~d~ViEa-v~E~~~~K~~l~~~l~~~~~~~~~il 117 (286)
T PRK07819 80 G-DFADRQLVIEA-VVEDEAVKTEIFAELDKVVTDPDAVL 117 (286)
T ss_pred H-HhCCCCEEEEe-cccCHHHHHHHHHHHHHhhCCCCcEE
Confidence 1 12467888865 2233444556777777777 566554
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.15 E-value=4.5 Score=34.32 Aligned_cols=97 Identities=16% Similarity=0.069 Sum_probs=50.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+||=.|+|. |...+.+|+ +|+ .|+.+|. ++-.+.+++ .+.. ..+.....++.....
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~-----------~~v~~~~~~~~~~i~ 228 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT-----------DIVDYKNGDVVEQIL 228 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc-----------eEecCCCCCHHHHHH
Confidence 34678999998875 666666664 477 4888886 434444442 1110 001100000000000
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.......+|+|+-+ .- ....+....++++++|+++.
T Consensus 229 ~~~~~~~~d~vld~--~g----~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 229 KLTGGKGVDAVIIA--GG----GQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred HHhCCCCCcEEEEC--CC----CHHHHHHHHHHhhcCCEEEE
Confidence 00123468988843 22 13456777788888888764
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.15 E-value=5.1 Score=31.99 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=46.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|++++. .+.++.+.+.+...+ .++....+|..+.+..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~-------------~~~~~~~~D~~~~~~~ 69 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT-------------DNVYSFQLKDFSQESI 69 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEEccCCCHHHH
Confidence 467899999999886 45556677999999885 445544444443322 2344445555443322
Q ss_pred c-------ccCC-CccEEEEcc
Q 027594 139 K-------AVAP-PFDYIIGTD 152 (221)
Q Consensus 139 ~-------~~~~-~fD~Vi~~d 152 (221)
. ..-. +.|+++.+-
T Consensus 70 ~~~~~~~~~~~g~~iD~li~na 91 (227)
T PRK08862 70 RHLFDAIEQQFNRAPDVLVNNW 91 (227)
T ss_pred HHHHHHHHHHhCCCCCEEEECC
Confidence 1 1113 789988875
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=83.10 E-value=4.3 Score=38.54 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=60.2
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC-----CCCceEEEEEEecCCCC
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDH 137 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~~dw~~~~~ 137 (221)
++|-=||+|+ | -++..+|..|.+|++.|. ++.++.++..+..+.........-+. .-.+++... ++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~----- 387 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTL-SY----- 387 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH-----
Confidence 4788999998 4 466777888999999997 56777776666543211100000000 011233221 11
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
. .-...|+||=+ +.-..+.-..+++.+.++++|+.++
T Consensus 388 -~-~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~il 424 (714)
T TIGR02437 388 -A-GFDNVDIVVEA-VVENPKVKAAVLAEVEQHVREDAIL 424 (714)
T ss_pred -H-HhcCCCEEEEc-CcccHHHHHHHHHHHHhhCCCCcEE
Confidence 1 12467888854 3344556667888888888877654
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.90 E-value=6.3 Score=31.76 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=47.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHH----HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a----~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+++++|=.|+ +|.+|..++ +.|++|+.++. .+-++.+...+...+ .++.+...|..+.+
T Consensus 9 ~~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~-------------~~~~~~~~Dl~d~~ 74 (259)
T PRK08213 9 DLSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG-------------IDALWIAADVADEA 74 (259)
T ss_pred CcCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEEccCCCHH
Confidence 457889999995 444555544 45889999886 334444443333221 34666777776654
Q ss_pred Ccc-------ccCCCccEEEEcccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~ 154 (221)
... ....+.|.|+.+...
T Consensus 75 ~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 75 DIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCC
Confidence 331 112468999887543
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.85 E-value=12 Score=29.52 Aligned_cols=76 Identities=22% Similarity=0.285 Sum_probs=42.3
Q ss_pred CCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~----a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++||=.|+ +|.+|..+ +..|++|++++. ++..+.+...+... ..+.+...|..+....
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~D~~~~~~~ 69 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--------------GNVLGLAADVRDEADV 69 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--------------CcEEEEEccCCCHHHH
Confidence 5678999996 44444444 345889999985 43333333322211 2456666666554322
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....++|+|+.+.-.
T Consensus 70 ~~~~~~~~~~~~~~d~vi~~ag~ 92 (237)
T PRK07326 70 QRAVDAIVAAFGGLDVLIANAGV 92 (237)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 1 012368999876543
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.49 E-value=5.1 Score=32.12 Aligned_cols=79 Identities=29% Similarity=0.414 Sum_probs=45.9
Q ss_pred CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...++++|=.|++.| +|.. +++.|++|++++. ++.++.+...+... ..++.+...|..+.+
T Consensus 6 ~~~~k~ilItGasg~-IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 71 (258)
T PRK06949 6 NLEGKVALVTGASSG-LGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-------------GGAAHVVSLDVTDYQ 71 (258)
T ss_pred CCCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHH
Confidence 457889999995443 4433 3456889999885 44444444433322 134667777766543
Q ss_pred Ccc-------ccCCCccEEEEcccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~ 154 (221)
... ....+.|+|+.+...
T Consensus 72 ~~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 72 SIKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 221 112467998887553
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=82.39 E-value=3.4 Score=37.08 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=33.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHH
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~ 105 (221)
...+++||-||.|-+++.+-..|.+ |.++|. +.+.+.-+.|.
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence 3569999999999999999888988 456788 44777777664
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.37 E-value=18 Score=28.66 Aligned_cols=103 Identities=18% Similarity=0.200 Sum_probs=52.8
Q ss_pred CCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-h-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+.++++|=.|+..| +|.. ++..|++|++++. . ...+.+...+... ..++.+...|..+.+
T Consensus 4 ~~~k~vlItGasgg-iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~ 69 (248)
T PRK07806 4 LPGKTALVTGSSRG-IGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA-------------GGRASAVGADLTDEE 69 (248)
T ss_pred CCCcEEEEECCCCc-HHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc-------------CCceEEEEcCCCCHH
Confidence 46789999997544 3333 3456889888764 2 2333333222221 134566666766544
Q ss_pred Ccc-------ccCCCccEEEEcccccCC-------------cCHHHHHHHHHHhcCCCeEEEE
Q 027594 137 HIK-------AVAPPFDYIIGTDVVYAE-------------HLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y~~-------------~~~~~l~~~~~~ll~~~g~~~i 179 (221)
... ......|+|+.+-..... .....+++.+.+.++.+|.+++
T Consensus 70 ~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~ 132 (248)
T PRK07806 70 SVAALMDTAREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVF 132 (248)
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEE
Confidence 321 111357887765432110 0123455666665555555443
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=82.28 E-value=14 Score=30.51 Aligned_cols=95 Identities=28% Similarity=0.370 Sum_probs=52.6
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 67 ~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
+|+=+|+|. | .++..+++.|.+|++++. ++.++.+++ ++.... ...... .. ........ ..
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~--------~~~~~~-~~--~~~~~~~~-~~ 65 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLE--------DGEITV-PV--LAADDPAE-LG 65 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCccc--------CCceee-cc--cCCCChhH-cC
Confidence 578899986 3 456666777889999986 444443332 232110 011110 00 00111111 26
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
++|+|+.+=.-+ ....++..+...+.++..++..
T Consensus 66 ~~d~vila~k~~---~~~~~~~~l~~~l~~~~~iv~~ 99 (304)
T PRK06522 66 PQDLVILAVKAY---QLPAALPSLAPLLGPDTPVLFL 99 (304)
T ss_pred CCCEEEEecccc---cHHHHHHHHhhhcCCCCEEEEe
Confidence 799998774433 4677888888888777665543
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.04 E-value=7.1 Score=31.38 Aligned_cols=82 Identities=12% Similarity=0.211 Sum_probs=48.2
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+..++..... ..++.+...|..+...
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~~~~~ 74 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP-----------EREVHGLAADVSDDED 74 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC-----------CCeEEEEECCCCCHHH
Confidence 4578999999986654 33334556999999985 4444444444433210 2356666766655432
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+|+.+.-.
T Consensus 75 ~~~~~~~~~~~~g~id~li~~ag~ 98 (257)
T PRK09242 75 RRAILDWVEDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 11 112468998877543
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.01 E-value=7.9 Score=31.21 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=47.2
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..++..|++|++++. ++.++.+...+.... ..++.+...|..+....
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~~ 72 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH------------GVDVAVHALDLSSPEAR 72 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHHH
Confidence 467899999986653 23334567999999986 444444444443321 13466667776554332
Q ss_pred c---ccCCCccEEEEcccc
Q 027594 139 K---AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~---~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+++.+...
T Consensus 73 ~~~~~~~g~id~lv~~ag~ 91 (259)
T PRK06125 73 EQLAAEAGDIDILVNNAGA 91 (259)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 1 112468998887543
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.66 E-value=5.7 Score=34.44 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=24.4
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc
Q 027594 64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ 94 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~ 94 (221)
++.+||=.|+|. |..++.+|+ +|++|++++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~ 210 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISR 210 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeC
Confidence 678999999886 777777665 5899888875
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=81.59 E-value=9.8 Score=29.51 Aligned_cols=34 Identities=35% Similarity=0.505 Sum_probs=23.8
Q ss_pred CCCCCCeEEEeCC-Cc-cH-HHHHHHHhCCEEEEecc
Q 027594 61 SKLKGKRVIELGA-GC-GV-AGFGMALLGCNVITTDQ 94 (221)
Q Consensus 61 ~~~~~~~vLelGc-G~-G~-~~l~~a~~ga~v~~~D~ 94 (221)
..++++++|=+|+ |. |. .+..+++.|++|+.++.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R 60 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGR 60 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 3567899999996 53 53 34445567889988875
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.57 E-value=11 Score=30.35 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=48.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+++++|=.|++.|+ ++..++..|++|++++. ++.++.+...+..... ..++.+...|..+.+.
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~ 73 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP-----------GARLLAARCDVLDEAD 73 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEEecCCCHHH
Confidence 4578999999987764 33344567999999986 4444444433332210 1356667777766543
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+-.+
T Consensus 74 v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 74 VAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 21 112468998877544
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.35 E-value=8.9 Score=31.30 Aligned_cols=79 Identities=23% Similarity=0.315 Sum_probs=47.3
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++++|=.|++.|+ ++..+++.|++|++++.++.++.+...+... ..++.+..+|..+.....
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~~ 70 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSN-------------GGKAKAYHVDISDEQQVK 70 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhc-------------CCeEEEEEeecCCHHHHH
Confidence 467899999987764 3334556799999988644333333333222 134667777776653321
Q ss_pred -------ccCCCccEEEEcccc
Q 027594 140 -------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 140 -------~~~~~fD~Vi~~d~~ 154 (221)
....+.|+++.+--+
T Consensus 71 ~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 71 DFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHHHHHcCCcCEEEECCCC
Confidence 112468999887544
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.16 E-value=8.7 Score=32.88 Aligned_cols=32 Identities=31% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc
Q 027594 63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ 94 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~ 94 (221)
.+|.+||=.|+|. |...+.+|+ +|+++++++.
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~ 212 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISS 212 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeC
Confidence 3678898888875 777666665 4888777764
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=81.15 E-value=4 Score=33.69 Aligned_cols=32 Identities=22% Similarity=0.189 Sum_probs=25.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC-------CEEEEecc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ 94 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g-------a~v~~~D~ 94 (221)
.++..++|+|||.|.+|-.++..- ..++++|-
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 355689999999999999988642 36889995
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.14 E-value=19 Score=29.07 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=44.9
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++++|=.|+..|+ ++..+++.|++|+++|.+ +.++.+.+ ..+ .++.+...|+.+.+..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~-------------~~~~~~~~Dl~~~~~~ 67 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA---SLG-------------ERARFIATDITDDAAI 67 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC-------------CeeEEEEecCCCHHHH
Confidence 467899999976553 333445679999999863 32222221 111 2466777777765432
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+++.+-..
T Consensus 68 ~~~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 68 ERAVATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112468999877544
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=80.94 E-value=12 Score=35.36 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=45.1
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+|++||=.|++.|+ ++..++..|++|+++|. ++.++.+...+.. ...+.+...|..+...
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~--------------~~~v~~v~~Dvtd~~~ 484 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG--------------PDRALGVACDVTDEAA 484 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc--------------cCcEEEEEecCCCHHH
Confidence 4567899999975442 22334456999999996 3333333322211 1245666766655432
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....++|+|+.+-.+.
T Consensus 485 v~~~~~~~~~~~g~iDvvI~~AG~~ 509 (681)
T PRK08324 485 VQAAFEEAALAFGGVDIVVSNAGIA 509 (681)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 21 1124689998875543
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=80.86 E-value=6.8 Score=30.81 Aligned_cols=32 Identities=22% Similarity=0.410 Sum_probs=22.6
Q ss_pred CCCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEecc
Q 027594 63 LKGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQ 94 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~-~~l~~a~~ga-~v~~~D~ 94 (221)
.++.+||=+|||. |. ++..++..|. +++.+|.
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~ 53 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDD 53 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEEC
Confidence 4668999999996 32 3445566676 4888885
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=80.86 E-value=5.4 Score=32.53 Aligned_cols=41 Identities=17% Similarity=0.183 Sum_probs=25.9
Q ss_pred CCeEEEeCCCccHHHHHHHHh----------CCEEEEecchh-hHHHHHHHH
Q 027594 65 GKRVIELGAGCGVAGFGMALL----------GCNVITTDQIE-VLPLLKRNV 105 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~----------ga~v~~~D~~~-~l~~~~~n~ 105 (221)
..+|+|+|+|+|.++.-+... ..+++.+|.+. +.+.-++++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L 70 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL 70 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence 369999999999888766542 13699999854 444444443
|
; PDB: 4F3N_A 1ZKD_B. |
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.60 E-value=4 Score=32.75 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=47.1
Q ss_pred CCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+- +..+++.|++|++++. ++-++.+...+... ..++.+...|..+....
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i 71 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA-------------GGEALFVACDVTRDAEV 71 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence 4678999999866542 2234556899999986 44444444444332 13567777777654332
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+|+.+...
T Consensus 72 ~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 72 KALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHHHHHhCCCCEEEECCCC
Confidence 1 112467999877543
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.59 E-value=13 Score=30.86 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=45.0
Q ss_pred cchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHH
Q 027594 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLP 99 (221)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~ 99 (221)
-++++.|-+.+...+.....+....+|+...|||+-.|-.+-.+-+.+..|+++|...|.+
T Consensus 186 SRStLKLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~ 246 (358)
T COG2933 186 SRSTLKLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQ 246 (358)
T ss_pred chhhhhHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhcceEEEEeccchhhh
Confidence 3467777776665543333333456889999999999999999999999999999644433
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.49 E-value=5.7 Score=33.02 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=46.7
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+.++++|=.|++.|+ ++..+++.|++|++++. .+.++.+...+...+ ..+.+...|..+...
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~-------------~~~~~~~~Dl~d~~~ 103 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG-------------GDAMAVPCDLSDLDA 103 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHH
Confidence 4567899999986654 23334556899999986 444444443332211 245666766665432
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--.
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 112468999887543
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.43 E-value=14 Score=29.35 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=26.5
Q ss_pred CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHH
Q 027594 62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRN 104 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~~~l~~~~~n 104 (221)
.++++++|=.||+.| +|.. +++.|++|++++. ++.++.+...
T Consensus 3 ~l~~k~vlItG~sgg-iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~ 49 (239)
T PRK08703 3 TLSDKTILVTGASQG-LGEQVAKAYAAAGATVILVARHQKKLEKVYDA 49 (239)
T ss_pred CCCCCEEEEECCCCc-HHHHHHHHHHHcCCEEEEEeCChHHHHHHHHH
Confidence 356789999997544 4433 3456899999986 4444433333
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.24 E-value=8.7 Score=31.09 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=49.7
Q ss_pred CCCCCeEEEeCCCccHH---HHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~---~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+++++|=.|++.|+- +..++..|++|+.++. ++.++.+..++...+ .++.+..+|..+...
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~ 73 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG-------------IEAHGYVCDVTDEDG 73 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHHH
Confidence 45788999999887643 3345567999988885 444444444443321 346677777765543
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+-.+.
T Consensus 74 ~~~~~~~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 74 VQAMVSQIEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCC
Confidence 21 1124689998876543
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.21 E-value=8 Score=31.76 Aligned_cols=79 Identities=15% Similarity=0.221 Sum_probs=46.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|+++|. .+.++.+...+...+ .++.+...|..+....
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~v 70 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG-------------FDVHGVMCDVRHREEV 70 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEeCCCCCHHHH
Confidence 578899999987764 33344567999999986 334443333332221 2466667676654432
Q ss_pred c-------ccCCCccEEEEcccc
Q 027594 139 K-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~ 154 (221)
. ....+.|+++.+.-+
T Consensus 71 ~~~~~~~~~~~g~id~li~nAg~ 93 (275)
T PRK05876 71 THLADEAFRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHHHHHHHHcCCCCEEEECCCc
Confidence 1 112467998887543
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=80.09 E-value=6.4 Score=37.37 Aligned_cols=103 Identities=21% Similarity=0.203 Sum_probs=57.7
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC-----CCCceEEEEEEecCCCC
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDH 137 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~~dw~~~~~ 137 (221)
++|-=||+|+ | -++..+|..|.+|++.|. ++.++.++..++.+.........-+. ...++++.. +. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~---~- 388 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTL-DY---A- 388 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeC-CH---H-
Confidence 4799999998 4 467777888999999997 55777766665543211000000000 012233221 11 1
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
.-...|+||=+ +.-..+.-..+++.+.++++|+..+
T Consensus 389 ---~~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~~~~il 424 (715)
T PRK11730 389 ---GFERVDVVVEA-VVENPKVKAAVLAEVEQKVREDTIL 424 (715)
T ss_pred ---HhcCCCEEEec-ccCcHHHHHHHHHHHHhhCCCCcEE
Confidence 12457777754 2233455566777777777766543
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=80.07 E-value=11 Score=31.26 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=25.5
Q ss_pred CCCCCeEEEeCCCc-cH-HHHHHHHhC-CEEEEecch
Q 027594 62 KLKGKRVIELGAGC-GV-AGFGMALLG-CNVITTDQI 95 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~-~~l~~a~~g-a~v~~~D~~ 95 (221)
.+++.+|+=+|||. |. .+..+++.| .+++.+|.+
T Consensus 27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 45778999999995 54 555667788 579998853
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.03 E-value=6.9 Score=31.50 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=45.5
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|..+....+...+... ..++.+...|..+....
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~ 71 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAA-------------GGEALALTADLETYAGA 71 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhc-------------CCeEEEEEEeCCCHHHH
Confidence 4578899999987654 3334456799999998643232222322221 13466667777654322
Q ss_pred c-------ccCCCccEEEEcc
Q 027594 139 K-------AVAPPFDYIIGTD 152 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d 152 (221)
. ......|+++.+-
T Consensus 72 ~~~~~~~~~~~~~id~lv~nA 92 (260)
T PRK12823 72 QAAMAAAVEAFGRIDVLINNV 92 (260)
T ss_pred HHHHHHHHHHcCCCeEEEECC
Confidence 1 1124689988764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281 | Back alignment and structure |
|---|
Score = 108 bits (269), Expect = 1e-28
Identities = 38/189 (20%), Positives = 68/189 (35%), Gaps = 20/189 (10%)
Query: 17 EVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCG 76
L +Q + VW + L P + GK V ELGAG G
Sbjct: 39 APLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQ-------PELIAGKTVCELGAGAG 91
Query: 77 VAGFGMALLGCN-VITTD--QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133
+ L G + V+ TD E+L L+ N+ +T+ + + + S + V WG
Sbjct: 92 LVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTA--NSCSSETVKRASPKVVPYRWG 149
Query: 134 N---EDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFAL-----SGPKTTILLGYEIRS 185
+ F ++ D++ + LL+++ L + P L+ +
Sbjct: 150 DSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR 209
Query: 186 TSVHEQMLQ 194
+ E+ L
Sbjct: 210 PHLAERDLA 218
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 56 GRFCPSKLKGKRVIELGAGCGVAGFGMA--LLGCNVITTD-QIEVLPLLKRNVEWNTSRI 112
+ R+ +LGAG G AG +A L V + E+ +R++E
Sbjct: 29 ASLVADD-RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLE------ 81
Query: 113 SQMNPGSDLLGSIQAVELDW--GNEDHIKAVAPP--FDYIIGT 151
+ + I+ +E D + ++A P F ++I
Sbjct: 82 --LPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMN 122
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 1e-04
Identities = 37/249 (14%), Positives = 72/249 (28%), Gaps = 67/249 (26%)
Query: 24 QFSQDPNSKHLGTT--------VWDASVVFVKYL---EKNCRKGRFCPSKLKGKRVIELG 72
+ + T +++ + VF KY + K R +L+ + + +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI- 155
Query: 73 AGCGVAGFG---MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-- 127
GV G G +AL C +V + + W + N +L +Q
Sbjct: 156 --DGVLGSGKTWVALDVCL-----SYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLL 206
Query: 128 --VELDW-GNEDHIKAVAPPFD------------------YIIGTDVVYAEHLLEP---- 162
++ +W DH + ++ +V A+
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNAFNLS 265
Query: 163 ---LLQT-----IFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK---LVPKAKES 211
LL T LS TT + T +++ + + + L +
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT- 324
Query: 212 TMWGNPLGL 220
NP L
Sbjct: 325 ---TNPRRL 330
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 14/98 (14%)
Query: 56 GRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTD-QIEVLPLLKRNVEWNTSRIS 113
+F ++ ++I+L +G G+ ++ ++ + Q + + KR+V +N
Sbjct: 41 AKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN----- 95
Query: 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 151
L I+ +E D + D +
Sbjct: 96 ------QLEDQIEIIEYDLKKITDLIP-KERADIVTCN 126
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 221 | |||
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.89 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.78 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.74 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.71 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.71 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.7 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.7 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.69 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.69 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.68 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.68 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.68 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.68 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.67 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.67 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.67 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.67 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.67 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.67 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.66 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.66 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.66 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.66 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.66 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.65 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.65 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.65 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.65 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.65 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.65 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.64 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.64 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.64 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.64 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.64 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.64 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.63 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.63 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.63 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.62 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.62 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.62 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.62 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.62 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.62 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.62 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.61 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.61 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.61 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.61 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.61 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.61 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.61 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.61 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.6 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.6 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.6 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.6 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.6 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.6 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.6 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.6 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.59 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.59 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.59 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.59 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.59 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.58 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.58 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.58 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.58 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.58 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.58 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.58 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.57 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.57 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.57 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.57 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.56 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.56 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.56 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.56 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.56 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.55 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.55 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.55 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.55 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.54 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.54 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.54 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.54 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.53 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.53 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.53 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.53 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.53 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.53 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.53 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.52 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.52 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.52 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.51 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.51 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.51 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.51 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.51 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.5 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.5 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.5 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.5 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.5 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.5 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.5 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.5 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.5 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.5 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.49 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.49 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.49 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.49 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.49 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.49 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.49 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.48 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.48 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.48 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.48 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.48 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.47 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.47 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.47 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.47 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.47 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.47 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.47 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.46 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.46 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.46 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.46 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.46 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.46 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.46 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.46 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.45 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.45 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.45 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.45 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.45 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.45 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.44 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.44 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.44 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.43 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.43 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.43 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.43 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.43 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.42 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.42 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.42 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.41 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.41 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.41 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.41 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.41 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.41 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.41 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.41 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.41 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.41 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.4 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.4 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.4 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.4 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.39 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.39 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.39 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.39 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.39 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.38 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.38 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.38 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.37 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.37 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.37 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.37 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.36 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.36 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.36 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.36 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.35 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.35 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.35 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.35 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.34 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.34 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.34 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.34 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.34 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.33 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.33 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.33 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.32 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.32 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.32 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.31 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.31 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.31 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.31 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.3 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.3 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.3 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.29 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.29 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.29 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.28 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.27 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.26 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.25 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.25 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.24 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.24 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.23 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.23 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.23 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.22 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.22 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.22 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.22 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.22 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.21 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.21 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.2 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.2 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.19 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.19 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.18 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.16 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.15 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.13 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.13 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.11 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.11 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.11 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.08 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.08 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.07 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.06 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.06 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.05 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 99.05 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.04 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.04 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.02 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.02 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.02 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.0 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.97 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.96 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.95 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.95 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.95 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.9 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.88 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.87 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.84 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.82 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.8 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.75 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.73 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.69 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.67 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.67 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.66 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.61 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.6 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.56 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 98.55 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.39 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.25 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.21 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.2 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.2 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.1 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 98.06 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.0 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.0 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.97 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.96 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 97.91 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.9 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.84 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.8 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.56 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.47 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.44 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 97.27 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 97.21 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.16 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.11 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.06 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 96.86 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.71 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.45 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.26 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.18 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 96.05 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 95.87 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 95.84 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 95.81 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.76 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.73 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.71 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.17 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.86 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.83 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.69 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.63 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.55 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.53 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.48 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.41 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.19 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.02 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 93.92 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 93.73 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 93.61 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.38 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.37 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 93.25 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 92.91 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 92.9 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 92.88 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 92.87 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.59 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 92.58 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 92.43 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 92.34 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 92.08 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 91.92 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 91.58 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 91.53 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 91.2 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.13 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 91.07 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 90.91 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 90.89 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 90.72 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 90.68 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 90.62 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 90.51 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 90.4 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 90.21 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 89.91 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 89.89 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.84 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 89.65 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 89.64 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 89.63 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 89.56 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 89.53 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 89.5 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 89.49 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 89.24 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 89.22 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 89.2 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 89.09 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 89.06 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 88.87 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 88.85 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 88.62 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 88.58 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 88.57 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 88.56 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 88.36 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 88.29 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 88.16 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 88.01 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 88.0 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 87.99 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 87.6 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 87.56 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 87.5 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 87.49 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 87.25 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 87.24 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 87.18 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 87.15 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 87.14 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 87.13 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 87.11 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 87.03 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 86.97 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 86.96 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 86.92 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 86.82 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 86.81 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 86.79 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 86.67 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 86.53 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 86.39 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 86.31 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 86.27 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 86.2 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 86.08 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 86.04 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 85.96 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 85.96 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 85.79 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 85.69 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 85.57 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 85.54 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 85.52 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 85.48 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 85.24 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 85.24 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 85.22 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 85.19 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 85.15 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 85.1 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 85.08 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 85.06 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 84.93 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 84.89 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 84.86 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 84.77 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 84.61 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 84.59 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 84.56 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 84.51 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 84.47 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 84.46 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 84.44 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 84.41 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 84.38 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 84.34 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 84.3 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 84.29 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 84.1 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 84.09 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 83.92 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 83.73 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 83.61 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 83.53 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 83.33 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 83.3 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 83.24 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 82.95 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 82.94 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 82.79 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 82.7 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 82.67 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 82.63 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 82.56 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 82.44 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 82.42 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 82.21 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 82.17 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 82.14 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 82.12 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 82.08 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 81.92 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 81.88 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 81.56 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 81.51 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 81.39 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 81.3 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 81.29 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 81.12 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 81.03 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 81.01 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 80.94 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 80.92 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 80.91 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 80.85 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 80.84 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 80.78 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 80.77 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 80.73 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 80.63 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 80.55 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 80.53 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 80.52 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 80.52 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 80.38 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 80.28 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 80.28 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 80.08 |
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=166.46 Aligned_cols=170 Identities=19% Similarity=0.273 Sum_probs=119.4
Q ss_pred CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-h-hhHHHHHHHHHH
Q 027594 31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-I-EVLPLLKRNVEW 107 (221)
Q Consensus 31 ~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~-~~l~~~~~n~~~ 107 (221)
...+|..+|+++..|++++... ....++++|||||||+|.+++.+++.|+ +|+++|+ + ++++.+++|++.
T Consensus 53 ~~~~g~~~~~~~~~l~~~l~~~-------~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~ 125 (281)
T 3bzb_A 53 HPLWTSHVWSGARALADTLCWQ-------PELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIRE 125 (281)
T ss_dssp ---------CHHHHHHHHHHHC-------GGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHT
T ss_pred CCCCCceeecHHHHHHHHHHhc-------chhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence 4567889999999999999987 2445788999999999999999999988 8999999 4 599999999965
Q ss_pred hhhccccCCCCCCCCCceEEEEEEecCCCCccc---cCCCccEEEEcccccCCcCHHHHHHHHHHhcC---C--CeEEEE
Q 027594 108 NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSG---P--KTTILL 179 (221)
Q Consensus 108 n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~---~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~---~--~g~~~i 179 (221)
|........ ....+++.+..++|++...... ...+||+|++++++|+......+++.+.++|+ | ||.+++
T Consensus 126 N~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v 203 (281)
T 3bzb_A 126 HTANSCSSE--TVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV 203 (281)
T ss_dssp TCC------------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred hhhhhcccc--cCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence 521000000 0001468888999987532111 25789999999999999999999999999999 9 999888
Q ss_pred EEEecChh---HHHHHHHHHh-cC-CeEEEecCCC
Q 027594 180 GYEIRSTS---VHEQMLQMWK-SN-FNVKLVPKAK 209 (221)
Q Consensus 180 ~~~~r~~~---~~~~~~~~~~-~~-f~v~~v~~~~ 209 (221)
+...+... ....|++.++ .+ |+++.+....
T Consensus 204 ~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~ 238 (281)
T 3bzb_A 204 TFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPL 238 (281)
T ss_dssp EECC--------CTHHHHHHHHSTTEEEEEEECCC
T ss_pred EEEeeecccchhHHHHHHHHHhcCCEEEEEecccc
Confidence 76654432 1346666664 58 9998884433
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=139.87 Aligned_cols=160 Identities=14% Similarity=0.188 Sum_probs=117.9
Q ss_pred EEEcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc
Q 027594 16 LEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ 94 (221)
Q Consensus 16 ~~~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~ 94 (221)
-.+....+.|.|++..+..+. .+.+|+.|+. ...++.+|||+|||+|..++.+++.+. +|+++|+
T Consensus 15 d~~~~~~~~i~q~~~~~~~~~----d~~ll~~~~~----------~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi 80 (259)
T 3lpm_A 15 DYLLAENLRIIQSPSVFSFSI----DAVLLAKFSY----------LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEI 80 (259)
T ss_dssp EEETTTTEEEEEBTTTBCCCH----HHHHHHHHCC----------CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECC
T ss_pred ccccCCCEEEEeCCCCccCcH----HHHHHHHHhc----------CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEEC
Confidence 346677899999987666554 3788887763 112578999999999999999998876 8999998
Q ss_pred -hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC----------------
Q 027594 95 -IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---------------- 157 (221)
Q Consensus 95 -~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~---------------- 157 (221)
+.+++.+++|+..|+. .+++.+...|+.+.... ....+||+|+++++++..
T Consensus 81 ~~~~~~~a~~n~~~~~~-----------~~~v~~~~~D~~~~~~~-~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~ 148 (259)
T 3lpm_A 81 QERLADMAKRSVAYNQL-----------EDQIEIIEYDLKKITDL-IPKERADIVTCNPPYFATPDTSLKNTNEHFRIAR 148 (259)
T ss_dssp SHHHHHHHHHHHHHTTC-----------TTTEEEECSCGGGGGGT-SCTTCEEEEEECCCC-------------------
T ss_pred CHHHHHHHHHHHHHCCC-----------cccEEEEECcHHHhhhh-hccCCccEEEECCCCCCCccccCCCCchHHHhhh
Confidence 6699999999999886 45788888776544321 225789999999997765
Q ss_pred ----cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEE
Q 027594 158 ----HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 158 ----~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~ 204 (221)
..+..+++.+.++|+|||.+++...... ...+...++ .+|.+..
T Consensus 149 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~~~~~~~ 197 (259)
T 3lpm_A 149 HEVMCTLEDTIRVAASLLKQGGKANFVHRPER---LLDIIDIMRKYRLEPKR 197 (259)
T ss_dssp ----HHHHHHHHHHHHHEEEEEEEEEEECTTT---HHHHHHHHHHTTEEEEE
T ss_pred ccccCCHHHHHHHHHHHccCCcEEEEEEcHHH---HHHHHHHHHHCCCceEE
Confidence 2356799999999999999999664332 344555554 4676644
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=137.52 Aligned_cols=153 Identities=20% Similarity=0.308 Sum_probs=119.5
Q ss_pred CCcceEEEEEcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE
Q 027594 9 PSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN 88 (221)
Q Consensus 9 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~ 88 (221)
+.+..+...+.+..+++...++.+. +....+.+..+.+++..... ....++.+|||+|||+|..++.+++.+++
T Consensus 184 ~~w~~~~~~~~g~~~~~~~~pgvFs-~~~~d~~t~~ll~~l~~~l~-----~~~~~~~~VLDlGcG~G~~~~~la~~g~~ 257 (381)
T 3dmg_A 184 SLWRAFSARILGAEYTFHHLPGVFS-AGKVDPASLLLLEALQERLG-----PEGVRGRQVLDLGAGYGALTLPLARMGAE 257 (381)
T ss_dssp CCCEEEEEEETTEEEEEEECTTCTT-TTSCCHHHHHHHHHHHHHHC-----TTTTTTCEEEEETCTTSTTHHHHHHTTCE
T ss_pred cccceeeEEecCceEEEEeCCCcee-CCCCCHHHHHHHHHHHHhhc-----ccCCCCCEEEEEeeeCCHHHHHHHHcCCE
Confidence 4456788888999999999997654 33345677788888865421 02346789999999999999999999999
Q ss_pred EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC-----CcCHHH
Q 027594 89 VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-----EHLLEP 162 (221)
Q Consensus 89 v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~-----~~~~~~ 162 (221)
|+++|+ +.+++.+++|+..|+. .+++...|+.+. ....++||+|++++++++ ......
T Consensus 258 V~gvDis~~al~~A~~n~~~~~~-------------~v~~~~~D~~~~---~~~~~~fD~Ii~npp~~~~~~~~~~~~~~ 321 (381)
T 3dmg_A 258 VVGVEDDLASVLSLQKGLEANAL-------------KAQALHSDVDEA---LTEEARFDIIVTNPPFHVGGAVILDVAQA 321 (381)
T ss_dssp EEEEESBHHHHHHHHHHHHHTTC-------------CCEEEECSTTTT---SCTTCCEEEEEECCCCCTTCSSCCHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHcCC-------------CeEEEEcchhhc---cccCCCeEEEEECCchhhcccccHHHHHH
Confidence 999998 5699999999999875 366666544332 223478999999999887 566788
Q ss_pred HHHHHHHhcCCCeEEEEEEEe
Q 027594 163 LLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 163 l~~~~~~ll~~~g~~~i~~~~ 183 (221)
+++.+.++|+|||.++++...
T Consensus 322 ~l~~~~~~LkpGG~l~iv~n~ 342 (381)
T 3dmg_A 322 FVNVAAARLRPGGVFFLVSNP 342 (381)
T ss_dssp HHHHHHHHEEEEEEEEEEECT
T ss_pred HHHHHHHhcCcCcEEEEEEcC
Confidence 999999999999999987643
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-16 Score=121.37 Aligned_cols=147 Identities=20% Similarity=0.261 Sum_probs=108.1
Q ss_pred ceEEEEEcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEE
Q 027594 12 SVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVIT 91 (221)
Q Consensus 12 ~~~~~~~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~ 91 (221)
..+.-.+.+..+.+...++.+.... ....+..+.+++ ...++.+|||+|||+|..++.+++.+.+|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-----------~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~ 79 (194)
T 1dus_A 12 KIVEDILRGKKLKFKTDSGVFSYGK-VDKGTKILVENV-----------VVDKDDDILDLGCGYGVIGIALADEVKSTTM 79 (194)
T ss_dssp EEEEEEETTEEEEEEEETTSTTTTS-CCHHHHHHHHHC-----------CCCTTCEEEEETCTTSHHHHHHGGGSSEEEE
T ss_pred cEEeeecCCCceEEEeCCCcCCccc-cchHHHHHHHHc-----------ccCCCCeEEEeCCCCCHHHHHHHHcCCeEEE
Confidence 3466668888888877664433221 112233333333 1236789999999999999999988889999
Q ss_pred ecc-hhhHHHHHHHHHHhhhccccCCCCCCCCC-ceEEEEEEecCCCCccccCCCccEEEEcccccC-CcCHHHHHHHHH
Q 027594 92 TDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG-SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA-EHLLEPLLQTIF 168 (221)
Q Consensus 92 ~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~-~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~-~~~~~~l~~~~~ 168 (221)
+|. +.+++.+++|+..++. .+ ++.+...|+.... ...+||+|+++.++++ ......+++.+.
T Consensus 80 ~D~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~~d~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~l~~~~ 144 (194)
T 1dus_A 80 ADINRRAIKLAKENIKLNNL-----------DNYDIRVVHSDLYENV----KDRKYNKIITNPPIRAGKEVLHRIIEEGK 144 (194)
T ss_dssp EESCHHHHHHHHHHHHHTTC-----------TTSCEEEEECSTTTTC----TTSCEEEEEECCCSTTCHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHcCC-----------CccceEEEECchhccc----ccCCceEEEECCCcccchhHHHHHHHHHH
Confidence 998 6699999999988764 11 3888886664422 2568999999888776 466788999999
Q ss_pred HhcCCCeEEEEEEEecC
Q 027594 169 ALSGPKTTILLGYEIRS 185 (221)
Q Consensus 169 ~ll~~~g~~~i~~~~r~ 185 (221)
++|+|||.+++......
T Consensus 145 ~~L~~gG~l~~~~~~~~ 161 (194)
T 1dus_A 145 ELLKDNGEIWVVIQTKQ 161 (194)
T ss_dssp HHEEEEEEEEEEEESTH
T ss_pred HHcCCCCEEEEEECCCC
Confidence 99999999999877653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-16 Score=125.97 Aligned_cols=121 Identities=13% Similarity=0.096 Sum_probs=100.2
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccC
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM 115 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~ 115 (221)
..|+.+..+.+.+. ..++.+|||+|||+|..+..++..+.+|+++|. +.+++.+++++..++.
T Consensus 5 ~~~~~~~~~~~~~~-----------~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----- 68 (239)
T 1xxl_A 5 HHHHSLGLMIKTAE-----------CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV----- 68 (239)
T ss_dssp -CHHHHHHHHHHHT-----------CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-----
T ss_pred ccCCCcchHHHHhC-----------cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-----
Confidence 35677777777664 337789999999999999999999999999998 5699999999988764
Q ss_pred CCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 116 ~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.++.+...|+.. .+...++||+|+++.++++..+...+++.+.++|+|||.+++....
T Consensus 69 -------~~v~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 126 (239)
T 1xxl_A 69 -------ENVRFQQGTAES---LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY 126 (239)
T ss_dssp -------CSEEEEECBTTB---CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------CCeEEEeccccc---CCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 467887766543 3344678999999999999999999999999999999999987654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-17 Score=139.29 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=87.0
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++|++|||||||||++++.+|+.|| +|+++|.+++++.|+++++.|++ .++|+++..+..+ ..
T Consensus 80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~-----------~~~i~~i~~~~~~---~~ 145 (376)
T 4hc4_A 80 AALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGL-----------EDRVHVLPGPVET---VE 145 (376)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC-----------TTTEEEEESCTTT---CC
T ss_pred HhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCC-----------CceEEEEeeeeee---ec
Confidence 467899999999999999999999998 59999987799999999999987 5789998854433 32
Q ss_pred ccCCCccEEEE---cccccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 140 AVAPPFDYIIG---TDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 140 ~~~~~fD~Vi~---~d~~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
. +++||+|++ ...+.++..++.++....++|+|||.++
T Consensus 146 l-pe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 146 L-PEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp C-SSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred C-CccccEEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 2 468999997 4456678889999999999999999765
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-16 Score=125.53 Aligned_cols=128 Identities=22% Similarity=0.313 Sum_probs=97.4
Q ss_pred CCCCeEEEeCCC-ccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAG-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG-~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||+||| +|..++.+++. +.+|+++|+ +.+++.+++|+..++. ++.+...|+......
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~v~~~~~d~~~~~~~- 119 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-------------NVRLVKSNGGIIKGV- 119 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-------------CCEEEECSSCSSTTT-
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-------------CcEEEeCCchhhhhc-
Confidence 467899999999 99999999988 889999998 5699999999999863 578888665433322
Q ss_pred ccCCCccEEEEcccccCCcC-------------------HHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cC
Q 027594 140 AVAPPFDYIIGTDVVYAEHL-------------------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SN 199 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~-------------------~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~ 199 (221)
..++||+|+++++++.... ...+++.+.++|+|||.+++..+.+. .....+.+.++ .+
T Consensus 120 -~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~-~~~~~~~~~l~~~g 197 (230)
T 3evz_A 120 -VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE-KLLNVIKERGIKLG 197 (230)
T ss_dssp -CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-HHHHHHHHHHHHTT
T ss_pred -ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-hHHHHHHHHHHHcC
Confidence 2478999999988765332 47889999999999999998766543 23455556554 57
Q ss_pred CeEEEec
Q 027594 200 FNVKLVP 206 (221)
Q Consensus 200 f~v~~v~ 206 (221)
|.++.+.
T Consensus 198 ~~~~~~~ 204 (230)
T 3evz_A 198 YSVKDIK 204 (230)
T ss_dssp CEEEEEE
T ss_pred CceEEEE
Confidence 8887664
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-16 Score=126.97 Aligned_cols=154 Identities=19% Similarity=0.240 Sum_probs=111.2
Q ss_pred EEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHH
Q 027594 22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPL 100 (221)
Q Consensus 22 ~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~ 100 (221)
.+.+..+|+. .+|...++.+....+++... ..++++|||+|||+|.+++.+++.|++|+++|+ +.+++.
T Consensus 88 ~~~~~l~p~~-~fgtg~~~tt~~~~~~l~~~---------~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~ 157 (254)
T 2nxc_A 88 EIPLVIEPGM-AFGTGHHETTRLALKALARH---------LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQ 157 (254)
T ss_dssp SEEEECCCC------CCSHHHHHHHHHHHHH---------CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHH
T ss_pred ceEEEECCCc-cccCCCCHHHHHHHHHHHHh---------cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHH
Confidence 4556666643 33444557777777777654 235789999999999999999999999999998 669999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 101 ~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
+++|+..|+. . +++...++... ....+||+|+++.+. +.+..++..+.++|+|||.++++
T Consensus 158 a~~n~~~~~~------------~-v~~~~~d~~~~----~~~~~fD~Vv~n~~~---~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 158 AEANAKRNGV------------R-PRFLEGSLEAA----LPFGPFDLLVANLYA---ELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp HHHHHHHTTC------------C-CEEEESCHHHH----GGGCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHcCC------------c-EEEEECChhhc----CcCCCCCEEEECCcH---HHHHHHHHHHHHHcCCCCEEEEE
Confidence 9999999875 2 66666555432 124689999987543 23678999999999999999997
Q ss_pred EEecChhHHHHHHHHHh-cCCeEEEecC
Q 027594 181 YEIRSTSVHEQMLQMWK-SNFNVKLVPK 207 (221)
Q Consensus 181 ~~~r~~~~~~~~~~~~~-~~f~v~~v~~ 207 (221)
...... .+.+.+.++ .+|++..+..
T Consensus 218 ~~~~~~--~~~v~~~l~~~Gf~~~~~~~ 243 (254)
T 2nxc_A 218 GILKDR--APLVREAMAGAGFRPLEEAA 243 (254)
T ss_dssp EEEGGG--HHHHHHHHHHTTCEEEEEEE
T ss_pred eeccCC--HHHHHHHHHHCCCEEEEEec
Confidence 665443 355555554 4798866543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-15 Score=123.02 Aligned_cols=122 Identities=11% Similarity=0.064 Sum_probs=97.1
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
.+......+...+ ....++.+|||||||+|..++.+++.+. +|+++|. +.+++.+++++..+++
T Consensus 29 ~~~~~~~~~l~~l------~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------- 94 (257)
T 3f4k_A 29 GSPEATRKAVSFI------NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-------- 94 (257)
T ss_dssp CCHHHHHHHHTTS------CCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC--------
T ss_pred CCHHHHHHHHHHH------hcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC--------
Confidence 3444455554432 2344678999999999999999998865 9999998 5699999999998876
Q ss_pred CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.+++++...|+.. .+...++||+|+++.++++. ....+++.+.++|+|||.+++....
T Consensus 95 ---~~~~~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 95 ---ADRVKGITGSMDN---LPFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp ---TTTEEEEECCTTS---CSSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ---CCceEEEECChhh---CCCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 3568888866633 33346799999999999988 6899999999999999999998754
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=126.08 Aligned_cols=109 Identities=7% Similarity=-0.090 Sum_probs=92.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||+|||+|..++.+++. +++|+++|. +++++.+++|+..+++ .+++.+...|..+ .+
T Consensus 115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~---~~ 180 (312)
T 3vc1_A 115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI-----------DDHVRSRVCNMLD---TP 180 (312)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTS---CC
T ss_pred CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCceEEEECChhc---CC
Confidence 456789999999999999999987 999999998 6699999999998876 3578888866543 33
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
...++||+|+++.++++.+ ...+++.+.++|+|||.+++......
T Consensus 181 ~~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~ 225 (312)
T 3vc1_A 181 FDKGAVTASWNNESTMYVD-LHDLFSEHSRFLKVGGRYVTITGCWN 225 (312)
T ss_dssp CCTTCEEEEEEESCGGGSC-HHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred CCCCCEeEEEECCchhhCC-HHHHHHHHHHHcCCCcEEEEEEcccc
Confidence 3467999999999999884 99999999999999999998775433
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-16 Score=119.21 Aligned_cols=131 Identities=14% Similarity=-0.010 Sum_probs=89.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|+..++. +++++...+...... .
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~------------~~v~~~~~~~~~l~~--~ 85 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI------------ENTELILDGHENLDH--Y 85 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC------------CCEEEEESCGGGGGG--T
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCcHHHHHh--h
Confidence 446889999999999999999998999999998 5699999999998874 467777633322111 2
Q ss_pred cCCCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEecCh------hHHHHHHHHHh-cCCeEEE
Q 027594 141 VAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRST------SVHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------~~~~~~~~~~~-~~f~v~~ 204 (221)
..++||+|+++..+... .....+++.+.++|+|||.+++....... .....+...+. ..|.+..
T Consensus 86 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (185)
T 3mti_A 86 VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAML 165 (185)
T ss_dssp CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE
Confidence 35689999987433322 34456788899999999999886543221 11234444443 4577655
Q ss_pred ec
Q 027594 205 VP 206 (221)
Q Consensus 205 v~ 206 (221)
+.
T Consensus 166 ~~ 167 (185)
T 3mti_A 166 YQ 167 (185)
T ss_dssp EE
T ss_pred eh
Confidence 43
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-16 Score=122.11 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=89.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++++|||+|||+|..++.++..++ +|+++|. +++++.+++|++.++. +++++...|+.+... ..
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~-~~ 109 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL------------SGATLRRGAVAAVVA-AG 109 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC------------SCEEEEESCHHHHHH-HC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC------------CceEEEEccHHHHHh-hc
Confidence 4788999999999999998887776 6999998 5699999999999874 468888866644321 11
Q ss_pred cCCCccEEEEcccccCC-cCHHHHHHHHHH--hcCCCeEEEEEEEecC
Q 027594 141 VAPPFDYIIGTDVVYAE-HLLEPLLQTIFA--LSGPKTTILLGYEIRS 185 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~-~~~~~l~~~~~~--ll~~~g~~~i~~~~r~ 185 (221)
..++||+|+++++++.. +....++..+.+ +|+|||.+++....+.
T Consensus 110 ~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~ 157 (189)
T 3p9n_A 110 TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTC 157 (189)
T ss_dssp CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence 25789999998886553 678899999999 9999999999776544
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-15 Score=123.05 Aligned_cols=105 Identities=13% Similarity=0.119 Sum_probs=89.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||||||+|..+..+++.+.+|+++|. +++++.+++++..++. .++.+...|... .+..+
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~------------~~v~~~~~d~~~---l~~~~ 101 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH------------QQVEYVQGDAEQ---MPFTD 101 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCC-C---CCSCT
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC------------CceEEEEecHHh---CCCCC
Confidence 6789999999999999999999899999998 5699999999887764 467877755533 33446
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|+++.++++..+...+++.+.++|+|||.+++....
T Consensus 102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 79999999999999999999999999999999999987544
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=129.86 Aligned_cols=138 Identities=18% Similarity=0.200 Sum_probs=101.6
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHH---hhhccc
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEW---NTSRIS 113 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~---n~~~~~ 113 (221)
..+.+|+.|+. ..++.+|||||||+|.+++.+++.. .+|+++|+ +++++.+++|+.. |++
T Consensus 23 ~D~~lL~~~~~-----------~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l--- 88 (260)
T 2ozv_A 23 MDAMLLASLVA-----------DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF--- 88 (260)
T ss_dssp CHHHHHHHTCC-----------CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT---
T ss_pred cHHHHHHHHhc-----------ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC---
Confidence 45777787764 2256799999999999999999875 57999998 6699999999988 765
Q ss_pred cCCCCCCCCCceEEEEEEecCCCC----ccccCCCccEEEEcccccCC------------------cCHHHHHHHHHHhc
Q 027594 114 QMNPGSDLLGSIQAVELDWGNEDH----IKAVAPPFDYIIGTDVVYAE------------------HLLEPLLQTIFALS 171 (221)
Q Consensus 114 ~~~~~~~~~~~v~~~~~dw~~~~~----~~~~~~~fD~Vi~~d~~y~~------------------~~~~~l~~~~~~ll 171 (221)
.+++.+...|+.+... ......+||+|+++++++.. ..+..+++.+.++|
T Consensus 89 --------~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~L 160 (260)
T 2ozv_A 89 --------SARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIM 160 (260)
T ss_dssp --------GGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHE
T ss_pred --------cceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHc
Confidence 3468888877654411 01235689999999887654 23778999999999
Q ss_pred CCCeEEEEEEEecChhHHHHHHHHHhcCCeE
Q 027594 172 GPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 202 (221)
Q Consensus 172 ~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v 202 (221)
+|||.+++..... ....+.+.+++.|..
T Consensus 161 kpgG~l~~~~~~~---~~~~~~~~l~~~~~~ 188 (260)
T 2ozv_A 161 VSGGQLSLISRPQ---SVAEIIAACGSRFGG 188 (260)
T ss_dssp EEEEEEEEEECGG---GHHHHHHHHTTTEEE
T ss_pred CCCCEEEEEEcHH---HHHHHHHHHHhcCCc
Confidence 9999999876543 234566666555644
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-16 Score=125.10 Aligned_cols=107 Identities=17% Similarity=0.093 Sum_probs=91.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||+|||+|..+..+++. +++|+++|. +.+++.++++++.+++ .+++.+...|+.+. +
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---~ 99 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----------SERVHFIHNDAAGY---V 99 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCCTTC---C
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEECChHhC---C
Confidence 457789999999999999999875 789999998 5699999999988765 35788888666543 2
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
. .++||+|++..++++..+...+++.+.++|+|||.+++....
T Consensus 100 ~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 100 A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence 2 578999999999999888999999999999999999997654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-15 Score=123.27 Aligned_cols=107 Identities=12% Similarity=0.052 Sum_probs=91.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||||||+|..++.+++.+. +|+++|. +.+++.+++++..+++ .+++++...|+.+. +
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---~ 109 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL-----------QNRVTGIVGSMDDL---P 109 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC---C
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CcCcEEEEcChhhC---C
Confidence 45688999999999999999998755 8999998 5699999999988875 45789988776443 3
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...++||+|+++.++++. ....+++.+.++|+|||.+++....
T Consensus 110 ~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 110 FRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp CCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred CCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence 346789999999999988 7899999999999999999987754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=131.03 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=105.0
Q ss_pred eEEEEEcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEE
Q 027594 13 VINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVI 90 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~ 90 (221)
.....+.+..+++.+.++.+... .+...+..+.+++. ...+.+|||+|||+|.+++.+++. +++|+
T Consensus 183 ~~~~~~~~~~~~~~~~pg~Fs~~-~~d~~~~~ll~~l~-----------~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~ 250 (375)
T 4dcm_A 183 TVSWKLEGTDWTIHNHANVFSRT-GLDIGARFFMQHLP-----------ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVV 250 (375)
T ss_dssp CEEEEETTTTEEEEECTTCTTCS-SCCHHHHHHHHTCC-----------CSCCSEEEEETCTTCHHHHHHHHHCTTCEEE
T ss_pred ceEEEecCCceEEEeCCCcccCC-cccHHHHHHHHhCc-----------ccCCCeEEEEeCcchHHHHHHHHHCCCCEEE
Confidence 45677788899999999766532 23334444444332 234579999999999999999988 57899
Q ss_pred Eecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC-----cCHHHHH
Q 027594 91 TTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLEPLL 164 (221)
Q Consensus 91 ~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~-----~~~~~l~ 164 (221)
++|. +.+++.+++|+..|++.. ..++.+...|... ....++||+|+++++++.. .....++
T Consensus 251 gvD~s~~al~~Ar~n~~~ngl~~---------~~~v~~~~~D~~~----~~~~~~fD~Ii~nppfh~~~~~~~~~~~~~l 317 (375)
T 4dcm_A 251 FVDESPMAVASSRLNVETNMPEA---------LDRCEFMINNALS----GVEPFRFNAVLCNPPFHQQHALTDNVAWEMF 317 (375)
T ss_dssp EEESCHHHHHHHHHHHHHHCGGG---------GGGEEEEECSTTT----TCCTTCEEEEEECCCC-------CCHHHHHH
T ss_pred EEECcHHHHHHHHHHHHHcCCCc---------CceEEEEechhhc----cCCCCCeeEEEECCCcccCcccCHHHHHHHH
Confidence 9998 569999999999987520 1245556644432 1235689999999998752 2345789
Q ss_pred HHHHHhcCCCeEEEEEEEe
Q 027594 165 QTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 165 ~~~~~ll~~~g~~~i~~~~ 183 (221)
+.+.++|+|||.++++...
T Consensus 318 ~~~~~~LkpgG~l~iv~n~ 336 (375)
T 4dcm_A 318 HHARRCLKINGELYIVANR 336 (375)
T ss_dssp HHHHHHEEEEEEEEEEEET
T ss_pred HHHHHhCCCCcEEEEEEEC
Confidence 9999999999999996643
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-16 Score=120.85 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=88.6
Q ss_pred CeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
.+|||+|||+|..+..+++. +.+|+++|. +.+++.+++++..++. .+++++...|..+ .+...+
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~---~~~~~~ 110 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-----------NDRIQIVQGDVHN---IPIEDN 110 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECBTTB---CSSCTT
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc-----------cCceEEEEcCHHH---CCCCcc
Confidence 39999999999999999987 668999998 6699999999998775 3578888866544 333467
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+||+|+++.++++..+...+++.+.++|+|||.+++...
T Consensus 111 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 149 (219)
T 3dlc_A 111 YADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGG 149 (219)
T ss_dssp CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEec
Confidence 899999999999999999999999999999999998754
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-15 Score=124.56 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=91.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||||||+|..+..++..|++|+++|. +.+++.+++++..++. ..++.+...|+.+... ...
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~~ 134 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGV-----------SDNMQFIHCAAQDVAS--HLE 134 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CC-----------GGGEEEEESCGGGTGG--GCS
T ss_pred CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEEcCHHHhhh--hcC
Confidence 4679999999999999999999999999998 5699999999988764 3578888876654431 346
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|+++.++++..+...+++.+.++|+|||.+++....
T Consensus 135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 79999999999999999999999999999999999998764
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-15 Score=119.91 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=109.6
Q ss_pred EEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHH
Q 027594 23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL 100 (221)
Q Consensus 23 ~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~ 100 (221)
..+..+++. .++...++....+.+++... ..++++|||+|||+|..++.+++.+. +|+++|. +.+++.
T Consensus 29 ~~~~~~~~~-~f~~~~~~~~~~~~~~l~~~---------~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~ 98 (205)
T 3grz_A 29 EIIRLDPGL-AFGTGNHQTTQLAMLGIERA---------MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA 98 (205)
T ss_dssp EEEEESCC------CCHHHHHHHHHHHHHH---------CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred eeEEecCCc-ccCCCCCccHHHHHHHHHHh---------ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence 444555532 23333557777788888754 23678999999999999999998876 8999998 569999
Q ss_pred HHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 101 ~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
+++|+..++. .++.+...|+... ..++||+|+++.++.+ +..+++.+.++|+|||.+++.
T Consensus 99 a~~~~~~~~~------------~~v~~~~~d~~~~-----~~~~fD~i~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~ 158 (205)
T 3grz_A 99 AEENAALNGI------------YDIALQKTSLLAD-----VDGKFDLIVANILAEI---LLDLIPQLDSHLNEDGQVIFS 158 (205)
T ss_dssp HHHHHHHTTC------------CCCEEEESSTTTT-----CCSCEEEEEEESCHHH---HHHHGGGSGGGEEEEEEEEEE
T ss_pred HHHHHHHcCC------------CceEEEecccccc-----CCCCceEEEECCcHHH---HHHHHHHHHHhcCCCCEEEEE
Confidence 9999998875 3378877665432 2578999999876543 578888889999999999987
Q ss_pred EEecChhHHHHHHHHHh-cCCeEEEecC
Q 027594 181 YEIRSTSVHEQMLQMWK-SNFNVKLVPK 207 (221)
Q Consensus 181 ~~~r~~~~~~~~~~~~~-~~f~v~~v~~ 207 (221)
...... .+.+.+.++ .+|++..+..
T Consensus 159 ~~~~~~--~~~~~~~~~~~Gf~~~~~~~ 184 (205)
T 3grz_A 159 GIDYLQ--LPKIEQALAENSFQIDLKMR 184 (205)
T ss_dssp EEEGGG--HHHHHHHHHHTTEEEEEEEE
T ss_pred ecCccc--HHHHHHHHHHcCCceEEeec
Confidence 655443 345555554 5788766543
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-15 Score=122.97 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=90.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||||||+|..++.+++. |++|+++|+ +++++.+++++..+++ .+++.+...|+.+.
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---- 134 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----------PRRKEVRIQGWEEF---- 134 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC-----------SSCEEEEECCGGGC----
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECCHHHc----
Confidence 447789999999999999999987 999999998 5699999999988775 45788888776433
Q ss_pred ccCCCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 140 AVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.++||+|+++.++++. .....+++.+.++|+|||.+++......
T Consensus 135 --~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 187 (302)
T 3hem_A 135 --DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 187 (302)
T ss_dssp --CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred --CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence 5789999999999886 3458999999999999999998776543
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.5e-16 Score=121.86 Aligned_cols=158 Identities=14% Similarity=-0.013 Sum_probs=101.4
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
...+.+|+... ...++.+|||+|||+|..+..+++.|.+|+++|+ +.|++.++++................
T Consensus 8 ~~~l~~~~~~l--------~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~ 79 (203)
T 1pjz_A 8 NKDLQQYWSSL--------NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 79 (203)
T ss_dssp THHHHHHHHHH--------CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEE
T ss_pred CHHHHHHHHhc--------ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccc
Confidence 34566666543 2336789999999999999999999999999998 55999998765431000000000000
Q ss_pred CCCceEEEEEEecCCCCccccC-CCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEecCh---------hH
Q 027594 121 LLGSIQAVELDWGNEDHIKAVA-PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRST---------SV 188 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~-~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~r~~---------~~ 188 (221)
...++++...|..+. +... ++||+|+++.++++. +....+++.+.++|+|||++++....... -.
T Consensus 80 ~~~~v~~~~~d~~~l---~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~ 156 (203)
T 1pjz_A 80 AAPGIEIWCGDFFAL---TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVP 156 (203)
T ss_dssp ECSSSEEEEECCSSS---THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCC
T ss_pred cCCccEEEECccccC---CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCC
Confidence 024678888665433 2222 689999998887764 34566899999999999985544322110 01
Q ss_pred HHHHHHHHhcCCeEEEecCCCC
Q 027594 189 HEQMLQMWKSNFNVKLVPKAKE 210 (221)
Q Consensus 189 ~~~~~~~~~~~f~v~~v~~~~~ 210 (221)
.+.+.+.++.+|++..+.....
T Consensus 157 ~~el~~~~~~gf~i~~~~~~~~ 178 (203)
T 1pjz_A 157 QTWLHRVMSGNWEVTKVGGQDT 178 (203)
T ss_dssp HHHHHHTSCSSEEEEEEEESSC
T ss_pred HHHHHHHhcCCcEEEEeccccc
Confidence 3455555555898877765554
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=119.08 Aligned_cols=128 Identities=12% Similarity=0.050 Sum_probs=101.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+|||+|||+|..+..+++.+ .+|+++|. +.+++.+++++..++. .++.+...|+...
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~--- 100 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------------KNVEVLKSEENKI--- 100 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEECBTTBC---
T ss_pred CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEecccccC---
Confidence 367899999999999999999876 68999998 5699999999988874 4688887665433
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh----------hHHHHHHHHHh-cCCeEEEe
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----------SVHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~----------~~~~~~~~~~~-~~f~v~~v 205 (221)
+....+||+|+++.++++..+...+++.+.++|+|||.+++....... -..+.+.+.++ .+|++..+
T Consensus 101 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 178 (219)
T 3dh0_A 101 PLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV 178 (219)
T ss_dssp SSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence 334678999999999999999999999999999999999987644221 01355556664 48886544
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=116.84 Aligned_cols=129 Identities=15% Similarity=0.205 Sum_probs=99.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||+|||+|..+..+++.+.+|+++|. +.+++.+++++..++. .++.+...|+.... .
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~~---~- 94 (199)
T 2xvm_A 31 VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENL------------DNLHTRVVDLNNLT---F- 94 (199)
T ss_dssp SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEECCGGGCC---C-
T ss_pred cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCC------------CCcEEEEcchhhCC---C-
Confidence 35679999999999999999999999999998 5699999999988764 35788876665432 2
Q ss_pred CCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEecCh-----------hHHHHHHHHHhcCCeEEEecCC
Q 027594 142 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST-----------SVHEQMLQMWKSNFNVKLVPKA 208 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r~~-----------~~~~~~~~~~~~~f~v~~v~~~ 208 (221)
.++||+|+++.++++.. ....+++.+.++|+|||.+++....... -..+.+.+.++. |++..+...
T Consensus 95 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-f~~~~~~~~ 173 (199)
T 2xvm_A 95 DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG-WERVKYNED 173 (199)
T ss_dssp CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT-SEEEEEECC
T ss_pred CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC-CeEEEeccc
Confidence 57899999999998765 7899999999999999998776542210 012344444454 888766544
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.9e-15 Score=114.86 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=92.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.+|||+|||+|..++.+++.+ .+|+++|. +++++.+++|++.++. +++.+...|+.+..
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~-- 103 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA------------RNVTLVEAFAPEGL-- 103 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC------------TTEEEEECCTTTTC--
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEeCChhhhh--
Confidence 3467899999999999999999987 78999998 6699999999998874 56788775553321
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV 202 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v 202 (221)
....+||+|+++.+++ ....+++.+.++|+|||.+++...... ....+.+.++ .+|.+
T Consensus 104 -~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~l~~~g~~~ 162 (204)
T 3e05_A 104 -DDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD--TLTKAVEFLEDHGYMV 162 (204)
T ss_dssp -TTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH--HHHHHHHHHHHTTCEE
T ss_pred -hcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc--cHHHHHHHHHHCCCce
Confidence 1236799999987765 688999999999999999998655432 2344555554 46643
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-15 Score=116.36 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=93.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|++.++. .+++.+...|..+ ...
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~---~~~ 118 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGL-----------SPRMRAVQGTAPA---ALA 118 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCTTG---GGT
T ss_pred CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCCEEEEeCchhh---hcc
Confidence 346789999999999999999988999999998 6699999999999875 2378888754433 111
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEecC
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 207 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~ 207 (221)
...+||+|+++..+ ..+ +++.+.++|+|||++++..... +....+.+.++ .++++..+..
T Consensus 119 ~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~--~~~~~~~~~l~~~g~~i~~i~~ 179 (204)
T 3njr_A 119 DLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL--ESETLLTQLHARHGGQLLRIDI 179 (204)
T ss_dssp TSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH--HHHHHHHHHHHHHCSEEEEEEE
T ss_pred cCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc--ccHHHHHHHHHhCCCcEEEEEe
Confidence 23579999987643 455 9999999999999998866543 22344455554 3677766543
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-15 Score=122.12 Aligned_cols=122 Identities=12% Similarity=0.071 Sum_probs=98.7
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
+...+.+.+.+.. ...++.+|||||||+|..+..+++. +.+|+++|. +.+++.+++++..+++
T Consensus 45 ~~~~~~~~l~~~~-------~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------- 109 (273)
T 3bus_A 45 ATDRLTDEMIALL-------DVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-------- 109 (273)
T ss_dssp HHHHHHHHHHHHS-------CCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHHHHhc-------CCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC--------
Confidence 3445556666553 3447789999999999999999874 789999998 5699999999988765
Q ss_pred CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.+++.+...|+.+ .+...++||+|+++.++++..+...+++.+.++|+|||.+++....
T Consensus 110 ---~~~~~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 110 ---ANRVTFSYADAMD---LPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp ---TTTEEEEECCTTS---CCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred ---CcceEEEECcccc---CCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 3568888866543 3334678999999999999989999999999999999999987754
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.6e-15 Score=120.42 Aligned_cols=106 Identities=15% Similarity=0.175 Sum_probs=88.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||||||+|..++.++ +.|++|+++|. +++++.+++++...+. ..++.+...|+.+.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~---- 126 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----------LRSKRVLLAGWEQF---- 126 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----------CSCEEEEESCGGGC----
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhC----
Confidence 4467899999999999999998 67889999998 5699999999887654 35688887665332
Q ss_pred ccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
.++||+|++..++++. .....+++.+.++|+|||.+++.....
T Consensus 127 --~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 127 --DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp --CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred --CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 2789999999999886 788999999999999999999877654
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-15 Score=121.89 Aligned_cols=124 Identities=17% Similarity=0.185 Sum_probs=97.4
Q ss_pred ecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccC
Q 027594 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM 115 (221)
Q Consensus 38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~ 115 (221)
+++.+..+.+.+.+.. ...++.+|||+|||+|..+..+++. +++|+++|. +.+++.+++++..+
T Consensus 36 ~~~~~~~~~~~~~~~~-------~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------- 101 (266)
T 3ujc_A 36 ISSGGLEATKKILSDI-------ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN------- 101 (266)
T ss_dssp CSTTHHHHHHHHTTTC-------CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-------
T ss_pred cccchHHHHHHHHHhc-------CCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-------
Confidence 4455566666666552 3456789999999999999999986 899999998 56999888765432
Q ss_pred CCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 116 ~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.++++...|+.+. +...++||+|+++.++++. .+...+++.+.++|+|||.+++......
T Consensus 102 -------~~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 163 (266)
T 3ujc_A 102 -------NKIIFEANDILTK---EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT 163 (266)
T ss_dssp -------TTEEEEECCTTTC---CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred -------CCeEEEECccccC---CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 3577877665443 3346799999999999998 8899999999999999999999875433
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=120.98 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=100.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..+..+++.+.+|+++|+ +.+++.+++++...+. ..++.+...|+.... ..
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~----~~ 130 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPK-----------AEYFSFVKEDVFTWR----PT 130 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGG-----------GGGEEEECCCTTTCC----CS
T ss_pred CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCC-----------CcceEEEECchhcCC----CC
Confidence 4569999999999999999999999999998 5699999998876443 256888886665432 24
Q ss_pred CCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEecCh--------hHHHHHHHHHh-cCCeEEEecCC
Q 027594 143 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST--------SVHEQMLQMWK-SNFNVKLVPKA 208 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r~~--------~~~~~~~~~~~-~~f~v~~v~~~ 208 (221)
.+||+|+++.++++.. ....+++.+.++|+|||.+++....... ...+.+.+.++ .+|++..+...
T Consensus 131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~ 207 (235)
T 3lcc_A 131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEEN 207 (235)
T ss_dssp SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEec
Confidence 5899999999998866 8899999999999999999886543211 11355666665 48988665443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.8e-15 Score=113.85 Aligned_cols=135 Identities=13% Similarity=0.062 Sum_probs=101.4
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
+....+.+++.+.. ...++.+|||+|||+|..++.+++.+.+|+++|. +.+++.+++|+..++.
T Consensus 18 ~~~~~~~~~~~~~~-------~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------- 82 (183)
T 2yxd_A 18 ITKEEIRAVSIGKL-------NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-------- 82 (183)
T ss_dssp CCCHHHHHHHHHHH-------CCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC--------
T ss_pred cCHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC--------
Confidence 34455556665552 3346789999999999999999997789999998 5699999999998874
Q ss_pred CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-
Q 027594 119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK- 197 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~- 197 (221)
+++++...|+.+. ...++||+|+++++ .....+++.+.++ |||.+++..... .....+.+.++
T Consensus 83 ----~~~~~~~~d~~~~----~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~--~~~~~~~~~l~~ 146 (183)
T 2yxd_A 83 ----KNCQIIKGRAEDV----LDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVL--ENAAKIINEFES 146 (183)
T ss_dssp ----CSEEEEESCHHHH----GGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCH--HHHHHHHHHHHH
T ss_pred ----CcEEEEECCcccc----ccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccc--ccHHHHHHHHHH
Confidence 4688888766541 22368999999988 6788999999998 999998876433 22345555554
Q ss_pred cCCeEEEe
Q 027594 198 SNFNVKLV 205 (221)
Q Consensus 198 ~~f~v~~v 205 (221)
.+|.++.+
T Consensus 147 ~g~~~~~~ 154 (183)
T 2yxd_A 147 RGYNVDAV 154 (183)
T ss_dssp TTCEEEEE
T ss_pred cCCeEEEE
Confidence 46777655
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-15 Score=123.32 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=92.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||+|||+|..+..+++. +++|+++|. +.+++.+++++...+. .+++.+...|+.. .+
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~---~~ 145 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----------ADNITVKYGSFLE---IP 145 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----------TTTEEEEECCTTS---CS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEEcCccc---CC
Confidence 346789999999999999999876 889999998 5699999999888765 3578888866543 33
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
...++||+|+++.++++..+...+++.+.++|+|||.+++.....
T Consensus 146 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 146 CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 446789999999999998889999999999999999999987643
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=123.80 Aligned_cols=108 Identities=17% Similarity=0.254 Sum_probs=87.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~----ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+|.+|||||||+|..++.+++. |++|+++|. +.|++.|++++...+. ..++++...|..+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----------~~~v~~~~~D~~~--- 134 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRD--- 134 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCTTT---
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----------CceEEEeeccccc---
Confidence 36789999999999999999875 568999998 5699999999887654 4578888755433
Q ss_pred ccccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 138 IKAVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
. +.++||+|+++.++++.. ....+++.+.++|+|||.++++...+..
T Consensus 135 ~--~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~ 183 (261)
T 4gek_A 135 I--AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE 183 (261)
T ss_dssp C--CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCS
T ss_pred c--cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCC
Confidence 2 235799999999988743 4567899999999999999998776553
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.8e-15 Score=119.69 Aligned_cols=102 Identities=13% Similarity=0.164 Sum_probs=86.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++++|||||||+|..+..+++.+. +|+++|. +++++.++++... .++.+...|.... +
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------~~~~~~~~d~~~~---~ 103 (253)
T 3g5l_A 42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS---------------PVVCYEQKAIEDI---A 103 (253)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCC---------------TTEEEEECCGGGC---C
T ss_pred ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhcc---------------CCeEEEEcchhhC---C
Confidence 44788999999999999999999988 8999998 5699998876551 3578887665433 3
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
...++||+|+++.++++..+...+++.+.++|+|||.+++..
T Consensus 104 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 104 IEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEe
Confidence 346799999999999999999999999999999999999874
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8.6e-15 Score=115.72 Aligned_cols=108 Identities=18% Similarity=0.141 Sum_probs=84.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++++|||||||+|..+..+++.+ .+|+++|+ +.+++.+++++..+++... ...++.+...|+. ...
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~---~~~ 97 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM-------QRKRISLFQSSLV---YRD 97 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH-------HHTTEEEEECCSS---SCC
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc-------cCcceEEEeCccc---ccc
Confidence 367899999999999999999876 58999998 5699999999887764100 0126888886652 233
Q ss_pred ccCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
...++||+|+++.++++.. ....+++.+.++|+|||.++..
T Consensus 98 ~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 140 (219)
T 3jwg_A 98 KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVST 140 (219)
T ss_dssp GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEE
T ss_pred cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEc
Confidence 3457899999999999876 4479999999999999965544
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=123.33 Aligned_cols=127 Identities=13% Similarity=0.091 Sum_probs=92.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||||||+|.+++.+|.. +++|+++|. +++++.+++|++.+++ .++++...++.+.....
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l------------~~v~~~~~d~~~~~~~~ 146 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL------------KGARALWGRAEVLAREA 146 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEECCHHHHTTST
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CceEEEECcHHHhhccc
Confidence 36789999999999999999976 568999998 5699999999999885 45888886664432211
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v 205 (221)
...++||+|++..+ ..+..++..+.++|+|||++++.......+....+...++ .+|.+..+
T Consensus 147 ~~~~~fD~I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~ 209 (249)
T 3g89_A 147 GHREAYARAVARAV----APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEV 209 (249)
T ss_dssp TTTTCEEEEEEESS----CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEE
T ss_pred ccCCCceEEEECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEE
Confidence 12478999998643 5678999999999999999877544333333333444443 36665443
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-14 Score=114.76 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=83.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++++|||||||+|..+..+++.+ .+|+++|. +.+++.+++++..+++... ...++.+...|+. ....
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~---~~~~ 98 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN-------QWERLQLIQGALT---YQDK 98 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH-------HHTTEEEEECCTT---SCCG
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc-------cCcceEEEeCCcc---cccc
Confidence 57799999999999999999876 58999998 5699999999876654100 0126888876542 2223
Q ss_pred cCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..++||+|+++.++++.. ....+++.+.++|+|||.+++..
T Consensus 99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 99 RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 347899999999999866 45899999999999999766543
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-16 Score=119.45 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=94.7
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
+....+.+.+.+.. ....++.+|||+|||+|..++.+++.+ .+|+++|. +++++.+++|+..+++
T Consensus 26 p~~~~~~~~~~~~l------~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------- 92 (187)
T 2fhp_A 26 PTTDKVKESIFNMI------GPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE------- 92 (187)
T ss_dssp CCCHHHHHHHHHHH------CSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-------
T ss_pred cCHHHHHHHHHHHH------HhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-------
Confidence 34455555555443 123467899999999999999888877 48999998 6699999999998875
Q ss_pred CCCCCCceEEEEEEecCCCC-ccccCCCccEEEEcccccCCcCHHHHHHHH--HHhcCCCeEEEEEEEecC
Q 027594 118 GSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTI--FALSGPKTTILLGYEIRS 185 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~-~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~--~~ll~~~g~~~i~~~~r~ 185 (221)
.+++++...|+.+... ......+||+|+++++ |........+..+ .++|+|||.+++......
T Consensus 93 ----~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~-~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 158 (187)
T 2fhp_A 93 ----PEKFEVRKMDANRALEQFYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV 158 (187)
T ss_dssp ----GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred ----CcceEEEECcHHHHHHHHHhcCCCCCEEEECCC-CCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence 3468888866654211 1112568999999887 5566778888888 777999999998766543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=121.84 Aligned_cols=126 Identities=12% Similarity=0.076 Sum_probs=93.1
Q ss_pred CCCeEEEeCCCccHHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~--~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|.+++.++. .+.+|+++|. +++++.+++|++.+++ .++++...|+.+......
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~~~~ 137 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------------ENTTFCHDRAETFGQRKD 137 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEESCHHHHTTCTT
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCEEEEeccHHHhccccc
Confidence 678999999999999999985 4678999998 5699999999998875 358888866543221111
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v 205 (221)
...+||+|++..+ .....+++.+.++|+|||.+++............+.+.++ .+|.+..+
T Consensus 138 ~~~~fD~V~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~ 199 (240)
T 1xdz_A 138 VRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENI 199 (240)
T ss_dssp TTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred ccCCccEEEEecc----CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEE
Confidence 1468999998763 5688999999999999999988654444333444555554 47766543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.62 E-value=5e-15 Score=117.72 Aligned_cols=110 Identities=14% Similarity=0.170 Sum_probs=87.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..+..++..+++|+++|+ +.+++.+++++..++... ....++.+...|.. ..+...
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~d~~---~~~~~~ 99 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQ-------KTGGKAEFKVENAS---SLSFHD 99 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCS-------SSSCEEEEEECCTT---SCCSCT
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCcc-------ccCcceEEEEeccc---ccCCCC
Confidence 6789999999999999999999999999998 569999999887665310 01235677665443 333446
Q ss_pred CCccEEEEcccccCCcCHH---HHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGTDVVYAEHLLE---PLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~---~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|+++.++++..+.. .+++.+.++|+|||.+++....
T Consensus 100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 143 (235)
T 3sm3_A 100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG 143 (235)
T ss_dssp TCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence 7899999999999887766 8999999999999999987653
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=121.24 Aligned_cols=111 Identities=18% Similarity=0.107 Sum_probs=85.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCC-ceEEEEEEecCCCC-ccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG-SIQAVELDWGNEDH-IKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~-~v~~~~~dw~~~~~-~~~ 140 (221)
++++|||+|||+|..++.+++.|++|+++|. +.+++.+++|++.|++ .+ ++.+...|..+... ...
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl-----------~~~~v~~i~~D~~~~l~~~~~ 221 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGL-----------EQAPIRWICEDAMKFIQREER 221 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTC-----------TTSCEEEECSCHHHHHHHHHH
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC-----------CccceEEEECcHHHHHHHHHh
Confidence 5679999999999999999999999999998 5699999999999986 22 47777755433211 000
Q ss_pred cCCCccEEEEcccccCC----------cCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 141 VAPPFDYIIGTDVVYAE----------HLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~----------~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
...+||+|+++++.|.. .....++..+.++|+|||.+++......
T Consensus 222 ~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~ 276 (332)
T 2igt_A 222 RGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSI 276 (332)
T ss_dssp HTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCT
T ss_pred cCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCC
Confidence 14689999998886542 2367888999999999999877665443
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.3e-15 Score=118.72 Aligned_cols=141 Identities=12% Similarity=0.046 Sum_probs=92.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhh--ccccCCC---CCCCCCceEEEEEEecCCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS--RISQMNP---GSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~--~~~~~~~---~~~~~~~v~~~~~dw~~~~~ 137 (221)
++.+|||+|||+|..+..+|+.|.+|+++|+ +.|++.++++...... .+..... ......++++...|. ..
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~---~~ 144 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSI---FD 144 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCT---TT
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcc---cc
Confidence 6789999999999999999999999999998 5599988764321000 0000000 000024678877544 33
Q ss_pred cccc-CCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEecC------h---hHHHHHHHHHhcCCeEEEe
Q 027594 138 IKAV-APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRS------T---SVHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 138 ~~~~-~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~r~------~---~~~~~~~~~~~~~f~v~~v 205 (221)
.+.. .++||+|++..++++. +....+++.+.++|+|||++++...... + -..+.+.+.+...|++..+
T Consensus 145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~~~~~~~el~~~l~~~f~v~~~ 224 (252)
T 2gb4_A 145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPPFYVPSAELKRLFGTKCSMQCL 224 (252)
T ss_dssp GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSSCCCCHHHHHHHHTTTEEEEEE
T ss_pred CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCCCCCCHHHHHHHhhCCeEEEEE
Confidence 3332 2789999998877653 4567899999999999999865432211 0 1135556666667888666
Q ss_pred cC
Q 027594 206 PK 207 (221)
Q Consensus 206 ~~ 207 (221)
..
T Consensus 225 ~~ 226 (252)
T 2gb4_A 225 EE 226 (252)
T ss_dssp EE
T ss_pred ec
Confidence 53
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=119.23 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=91.6
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
...+.+++.... ...++++|||+|||+|..+..+++.+.+|+++|+ +.+++.+++++..+
T Consensus 36 ~~~~~~~l~~~~-------~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~------------ 96 (216)
T 3ofk_A 36 RERHTQLLRLSL-------SSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW------------ 96 (216)
T ss_dssp HHHHHHHHHHHT-------TTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC------------
T ss_pred HHHHHHHHHHHc-------ccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC------------
Confidence 334555555432 3446789999999999999999999999999998 56999999876543
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCH---HHHHHHHHHhcCCCeEEEEEEEe
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL---EPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~---~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
+++++...|+.+.. ..++||+|+++.++++..+. ..+++.+.++|+|||.++++...
T Consensus 97 --~~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 97 --SHISWAATDILQFS----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp --SSEEEEECCTTTCC----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred --CCeEEEEcchhhCC----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 36788886654443 36789999999999987765 56699999999999999987653
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.6e-15 Score=119.66 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=82.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC--
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-- 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-- 137 (221)
...++.+|||||||+|..++.+++.|++|+++|. +.|++.+++|+..+. ...+|.+...
T Consensus 42 ~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~------------------v~~~~~~~~~~~ 103 (261)
T 3iv6_A 42 NIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC------------------VTIDLLDITAEI 103 (261)
T ss_dssp TCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC------------------CEEEECCTTSCC
T ss_pred CCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc------------------ceeeeeeccccc
Confidence 3457889999999999999999999999999998 559999998865431 2345544432
Q ss_pred ccccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 138 IKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.....++||+|+++.++++ .+....++..+.++| |||+++++.....
T Consensus 104 ~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~ 152 (261)
T 3iv6_A 104 PKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGF 152 (261)
T ss_dssp CGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSC
T ss_pred ccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCc
Confidence 1123568999999998875 345777899999999 9999999877543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.2e-15 Score=111.54 Aligned_cols=125 Identities=10% Similarity=0.004 Sum_probs=89.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|+..++. ..++ +...|... ..
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~-~~~~d~~~--~~ 88 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV-----------SDRI-AVQQGAPR--AF 88 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC-----------TTSE-EEECCTTG--GG
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC-----------CCCE-EEecchHh--hh
Confidence 346789999999999999999987 678999998 5699999999998775 2366 55543322 22
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEec
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~ 206 (221)
+...++||+|+++.++++ ..+++.+.++|+|||.+++....... ...+.+.++ .++++..+.
T Consensus 89 ~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 89 DDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVES--EQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp GGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHHH--HHHHHHHHHHHCCEEEEEE
T ss_pred hccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecccc--HHHHHHHHHHcCCeeEEEE
Confidence 222378999999988876 77899999999999999886654322 233444443 356655443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.9e-15 Score=120.25 Aligned_cols=119 Identities=20% Similarity=0.162 Sum_probs=96.7
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
...+.+++... ....++.+|||||||+|..+..+++. +.+|+++|. +.+++.+++++..++.
T Consensus 22 ~~~l~~~l~~~-------~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------- 86 (276)
T 3mgg_A 22 AETLEKLLHHD-------TVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-------- 86 (276)
T ss_dssp -CHHHHHHHTT-------CCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC--------
T ss_pred HHHHHHHHhhc-------ccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------
Confidence 34556666544 23457889999999999999999988 678999998 5699999999988764
Q ss_pred CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.++.+...|.... +...++||+|+++.++++..+...+++.+.++|+|||.+++...
T Consensus 87 ----~~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 87 ----KNVKFLQANIFSL---PFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp ----CSEEEEECCGGGC---CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ----CCcEEEEcccccC---CCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 4678877665433 33467999999999999999999999999999999999998764
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.4e-15 Score=115.04 Aligned_cols=124 Identities=11% Similarity=0.093 Sum_probs=96.2
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
+.+|||+|||+|..+..++..|.+|+++|. +.+++.++++. .++.+...|+.+ .+...+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~---~~~~~~ 101 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH-----------------PSVTFHHGTITD---LSDSPK 101 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC-----------------TTSEEECCCGGG---GGGSCC
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-----------------CCCeEEeCcccc---cccCCC
Confidence 679999999999999999999999999998 56999888761 246777655543 333467
Q ss_pred CccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEecCh-------------hHHHHHHHHHh-cCCeEEEecC
Q 027594 144 PFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVKLVPK 207 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r~~-------------~~~~~~~~~~~-~~f~v~~v~~ 207 (221)
+||+|+++.++++.. ....+++.+.++|+|||.+++....... ...+.+.+.++ .+|++..+..
T Consensus 102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 102 RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 999999999999864 8999999999999999999988754321 11355666664 5898876654
Q ss_pred C
Q 027594 208 A 208 (221)
Q Consensus 208 ~ 208 (221)
.
T Consensus 182 ~ 182 (203)
T 3h2b_A 182 D 182 (203)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.5e-15 Score=117.19 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=86.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||||||+|..+..++..|++|+++|. +.+++.++++.. ..++.+...|.... +...
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~---~~~~ 114 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE---------------GPDLSFIKGDLSSL---PFEN 114 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTC---------------BTTEEEEECBTTBC---SSCT
T ss_pred CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcc---------------cCCceEEEcchhcC---CCCC
Confidence 6789999999999999999999999999998 569988887641 24678887665433 3346
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|+++.++++..+...+++.+.++|+|||.+++....
T Consensus 115 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 155 (242)
T 3l8d_A 115 EQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG 155 (242)
T ss_dssp TCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcC
Confidence 79999999999999999999999999999999999998753
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-15 Score=115.72 Aligned_cols=104 Identities=16% Similarity=0.247 Sum_probs=86.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++...++ .++.+...|..+. +...
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~---~~~~ 101 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-------------SNVEFIVGDARKL---SFED 101 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCCEEEECCTTSC---CSCT
T ss_pred CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEECchhcC---CCCC
Confidence 3779999999999999999999999999998 669999999988764 3577777655432 2335
Q ss_pred CCccEEEEccc--ccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGTDV--VYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~d~--~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|+++++ +++......+++.+.++|+|||.+++....
T Consensus 102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 68999999999 666667889999999999999999987664
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-15 Score=119.13 Aligned_cols=110 Identities=16% Similarity=0.127 Sum_probs=84.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||+|||+|..++.++..++ +|+++|. +++++.+++|++.+++. .+++++...|..+.... ..
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------~~~v~~~~~d~~~~~~~-~~ 121 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----------SEQAEVINQSSLDFLKQ-PQ 121 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----------TTTEEEECSCHHHHTTS-CC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC----------ccceEEEECCHHHHHHh-hc
Confidence 578999999999999998877775 7999998 56999999999988740 14677777554332111 12
Q ss_pred CCC-ccEEEEcccccCCcCHHHHHHHH--HHhcCCCeEEEEEEEecC
Q 027594 142 APP-FDYIIGTDVVYAEHLLEPLLQTI--FALSGPKTTILLGYEIRS 185 (221)
Q Consensus 142 ~~~-fD~Vi~~d~~y~~~~~~~l~~~~--~~ll~~~g~~~i~~~~r~ 185 (221)
.++ ||+|+++++ |.......+++.+ .++|+|||.+++......
T Consensus 122 ~~~~fD~I~~~~~-~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 122 NQPHFDVVFLDPP-FHFNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp SSCCEEEEEECCC-SSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred cCCCCCEEEECCC-CCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 457 999999888 5667788888888 557999999998776554
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-15 Score=120.74 Aligned_cols=123 Identities=16% Similarity=0.201 Sum_probs=93.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++++|||+|||+|..++.+|+.|+ +|+++|. +.+++.+++|++.|++ .+++++...|..+.. .
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~-----------~~~v~~~~~D~~~~~---~- 189 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFP---G- 189 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCC---C-
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEECCHHHhc---c-
Confidence 578999999999999999999988 4999998 6699999999999986 345778775554332 2
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC----hhHHHHHHHHHh-cCCeEEEe
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~----~~~~~~~~~~~~-~~f~v~~v 205 (221)
..+||+|+++++ + ....++..+.++|+|||.+++...... ....+.+.+.++ .+++++.+
T Consensus 190 ~~~fD~Vi~~~p-~---~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~ 254 (278)
T 2frn_A 190 ENIADRILMGYV-V---RTHEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp CSCEEEEEECCC-S---SGGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred cCCccEEEECCc-h---hHHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence 578999999766 2 336778888999999999988766532 223445555554 47877663
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-14 Score=112.87 Aligned_cols=100 Identities=19% Similarity=0.156 Sum_probs=81.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..+..+++.+.+|+++|. +.+++.+++++. .++.+...|..+ .+..
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----------------~~~~~~~~d~~~---~~~~- 104 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----------------KEFSITEGDFLS---FEVP- 104 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC----------------TTCCEESCCSSS---CCCC-
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC----------------CceEEEeCChhh---cCCC-
Confidence 6789999999999999999999999999998 569998887654 135666644433 2233
Q ss_pred CCccEEEEcccccCCcCHHH--HHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGTDVVYAEHLLEP--LLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~--l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|+++.++++...... +++.+.++|+|||.+++....
T Consensus 105 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 147 (220)
T 3hnr_A 105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTI 147 (220)
T ss_dssp SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEEC
T ss_pred CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecc
Confidence 78999999999998777766 999999999999999998754
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.8e-15 Score=124.51 Aligned_cols=104 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...++++|||||||+|.+++.+++.|+ +|+++|.+++++.++++++.|+. .+++++...|..+ ..
T Consensus 61 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~---~~ 126 (340)
T 2fyt_A 61 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL-----------EDTITLIKGKIEE---VH 126 (340)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTT---SC
T ss_pred hhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCC-----------CCcEEEEEeeHHH---hc
Confidence 345788999999999999999999887 79999986699999999998875 4678888855543 33
Q ss_pred ccCCCccEEEEccc---ccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 140 AVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~---~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
.+.++||+|+++.+ +.+......++..+.++|+|||.++
T Consensus 127 ~~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 127 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CCCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 33578999999874 4456678889999999999999987
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.7e-15 Score=118.73 Aligned_cols=102 Identities=14% Similarity=0.093 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||||||+|..+..+++.+.+|+++|. +.+++.++++... ++.+...|..+. ..
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~----------------~v~~~~~d~~~~----~~ 100 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD----------------GITYIHSRFEDA----QL 100 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS----------------CEEEEESCGGGC----CC
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC----------------CeEEEEccHHHc----Cc
Confidence 36779999999999999999999999999998 5689888875432 467777555433 23
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHH-HhcCCCeEEEEEEEec
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILLGYEIR 184 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~-~ll~~~g~~~i~~~~r 184 (221)
+++||+|+++.++++..+...+++.+. ++|+|||.+++..+..
T Consensus 101 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 101 PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred CCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 678999999999999989999999999 9999999999988654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.6e-15 Score=114.11 Aligned_cols=120 Identities=11% Similarity=0.103 Sum_probs=95.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++ . +++.+...| .+...
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~------------~~v~~~~~d------~~~~~ 73 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----F------------DSVITLSDP------KEIPD 73 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----C------------TTSEEESSG------GGSCT
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----C------------CCcEEEeCC------CCCCC
Confidence 6779999999999999999988779999998 5699988887 1 246666544 23346
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh----------HHHHHHHHHhcCCeEEEecC
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----------VHEQMLQMWKSNFNVKLVPK 207 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~----------~~~~~~~~~~~~f~v~~v~~ 207 (221)
++||+|+++.++++..+...+++.+.++|+|||.+++....+... ..+.+.+.++ +|++..+..
T Consensus 74 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~~~ 147 (170)
T 3i9f_A 74 NSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKRFN 147 (170)
T ss_dssp TCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEEEC
T ss_pred CceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEccC
Confidence 789999999999999999999999999999999999986543311 1345666667 998866544
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.7e-14 Score=112.59 Aligned_cols=126 Identities=18% Similarity=0.187 Sum_probs=94.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++ +|||+|||+|..+..+++.|.+|+++|. +.+++.++++...++. ++.+...|... .+...
T Consensus 30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~---~~~~~ 92 (202)
T 2kw5_A 30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV-------------KITTVQSNLAD---FDIVA 92 (202)
T ss_dssp SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC-------------CEEEECCBTTT---BSCCT
T ss_pred CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEEcChhh---cCCCc
Confidence 45 9999999999999999999999999998 5699999999887652 46666655433 23345
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh--------------HHHHHHHHHhcCCeEEEecC
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS--------------VHEQMLQMWKSNFNVKLVPK 207 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~--------------~~~~~~~~~~~~f~v~~v~~ 207 (221)
++||+|+++.+.+.......+++.+.++|+|||.+++........ ..+.+.+.++ +|++..+..
T Consensus 93 ~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-Gf~v~~~~~ 170 (202)
T 2kw5_A 93 DAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP-SLNWLIANN 170 (202)
T ss_dssp TTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS-SSCEEEEEE
T ss_pred CCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc-CceEEEEEE
Confidence 789999997554445678889999999999999999987543211 1345556666 888865543
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=110.84 Aligned_cols=126 Identities=19% Similarity=0.266 Sum_probs=95.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..+..+++.+.+|+++|. +.+++.++++.. ++.+...|+... +...
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~-----------------~~~~~~~d~~~~---~~~~ 105 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP-----------------EARWVVGDLSVD---QISE 105 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCTTTS---CCCC
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC-----------------CCcEEEcccccC---CCCC
Confidence 6789999999999999999999999999998 568888887642 356666554432 2335
Q ss_pred CCccEEEEc-ccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEecCCC
Q 027594 143 PPFDYIIGT-DVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAK 209 (221)
Q Consensus 143 ~~fD~Vi~~-d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~~~ 209 (221)
++||+|+++ +++++. +....+++.+.++|+|||.+++............+.+.++ .+|++..+....
T Consensus 106 ~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~ 176 (195)
T 3cgg_A 106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESW 176 (195)
T ss_dssp CCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESST
T ss_pred CceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeeccc
Confidence 789999998 666654 4568899999999999999999877654333456666664 589988775543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-14 Score=120.15 Aligned_cols=107 Identities=14% Similarity=0.150 Sum_probs=89.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||+|||+|..++.+++. |++|+++|. +++++.+++++..+++ .+++.+...|+.+.
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---- 152 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----------NRSRQVLLQGWEDF---- 152 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCGGGC----
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChHHC----
Confidence 446789999999999999999976 999999998 5699999999887664 34678877655332
Q ss_pred ccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
+++||+|+++.++++. +....+++.+.++|+|||.+++......
T Consensus 153 --~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 198 (318)
T 2fk8_A 153 --AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSY 198 (318)
T ss_dssp --CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECC
T ss_pred --CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 2689999999999886 6889999999999999999999876654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.4e-15 Score=125.53 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=87.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++++|||||||+|..++.+++.|+ +|+++|.+++++.+++++..++. .+++++...|+.+. +.
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---~~ 129 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL-----------DHVVTIIKGKVEEV---EL 129 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTC---CC
T ss_pred cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCC-----------CCcEEEEECcHHHc---cC
Confidence 45788999999999999999999987 89999987799999999999886 45689988666544 33
Q ss_pred cCCCccEEEEcccc---cCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 141 VAPPFDYIIGTDVV---YAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~---y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
+.++||+|+++.+. .+....+.++..+.++|+|||.++.
T Consensus 130 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 130 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 45799999997653 3467899999999999999999863
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-15 Score=120.92 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=86.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..++.+++.|++|+++|. +.+++.+++++..++. ++.+...|..... . .
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~---~-~ 182 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL-------------NISTALYDINAAN---I-Q 182 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CEEEEECCGGGCC---C-C
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEecccccc---c-c
Confidence 6789999999999999999999999999998 5699999999988763 5777776654432 2 6
Q ss_pred CCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
++||+|+++.++++. +....+++.+.++|+|||.+++...
T Consensus 183 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 183 ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp SCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 789999999999864 5677999999999999999877654
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.60 E-value=3.1e-15 Score=117.47 Aligned_cols=106 Identities=14% Similarity=0.124 Sum_probs=84.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||+|||+|..++.++..++ +|+++|. +++++.+++|++.++. .++++...|+.+.. +..
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~------------~~v~~~~~D~~~~~--~~~ 119 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------------GNARVVNSNAMSFL--AQK 119 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCHHHHH--SSC
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHH--hhc
Confidence 578999999999999999887775 8999998 5699999999998874 46787776554321 123
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHH--hcCCCeEEEEEEEec
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEIR 184 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~--ll~~~g~~~i~~~~r 184 (221)
..+||+|+++++ |+......+++.+.+ +|+|||.+++.....
T Consensus 120 ~~~fD~V~~~~p-~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 120 GTPHNIVFVDPP-FRRGLLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp CCCEEEEEECCS-SSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred CCCCCEEEECCC-CCCCcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 468999999877 667778888888876 499999999877653
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.3e-15 Score=125.57 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=88.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...++++|||||||+|.+++.+++.|+ +|+++|.+++++.+++++..|+. .+++++...|+.+..
T Consensus 60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--- 125 (376)
T 3r0q_C 60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNL-----------DHIVEVIEGSVEDIS--- 125 (376)
T ss_dssp TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTC-----------TTTEEEEESCGGGCC---
T ss_pred ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCC-----------CCeEEEEECchhhcC---
Confidence 456889999999999999999999998 89999987999999999999886 456888886664432
Q ss_pred ccCCCccEEEEcccccC---CcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~---~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. .++||+|++..+.|. ......++..+.++|+|||.+++..
T Consensus 126 ~-~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 126 L-PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp C-SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred c-CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 2 278999999765555 3678889999999999999987643
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=114.86 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=93.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||+|||+|..+..+++.|.+|+++|. +.+++.+++++ + +.+...+.... + .
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~---------------~~~~~~d~~~~---~-~ 99 (211)
T 3e23_A 42 PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL---G---------------RPVRTMLFHQL---D-A 99 (211)
T ss_dssp CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---T---------------SCCEECCGGGC---C-C
T ss_pred CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc---C---------------CceEEeeeccC---C-C
Confidence 36789999999999999999999999999998 56999998876 2 23334443332 2 4
Q ss_pred CCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHh-cC-CeEEEe
Q 027594 142 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK-SN-FNVKLV 205 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r~~------------~~~~~~~~~~~-~~-f~v~~v 205 (221)
.++||+|+++.++++.. ....+++.+.++|+|||.+++....... ...+.+.+.++ .+ |++..+
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~ 179 (211)
T 3e23_A 100 IDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAV 179 (211)
T ss_dssp CSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEE
T ss_pred CCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEE
Confidence 67899999999999876 7889999999999999999998654321 12355666665 48 987655
Q ss_pred cC
Q 027594 206 PK 207 (221)
Q Consensus 206 ~~ 207 (221)
..
T Consensus 180 ~~ 181 (211)
T 3e23_A 180 ES 181 (211)
T ss_dssp EE
T ss_pred Ee
Confidence 43
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-16 Score=124.07 Aligned_cols=142 Identities=16% Similarity=0.181 Sum_probs=78.0
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
+..+.+++.+.. ....++++|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..++.
T Consensus 14 ~~~~~~~~~~~l------~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------- 79 (215)
T 4dzr_A 14 TEVLVEEAIRFL------KRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-------- 79 (215)
T ss_dssp HHHHHHHHHHHH------TTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------
T ss_pred HHHHHHHHHHHh------hhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--------
Confidence 455666666553 12247789999999999999999988 458999998 5699999999988752
Q ss_pred CCCCCceEEEEEEecCCCCc-cccCCCccEEEEcccccCCcCH--------------------------HHHHHHHHHhc
Q 027594 119 SDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAEHLL--------------------------EPLLQTIFALS 171 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~-~~~~~~fD~Vi~~d~~y~~~~~--------------------------~~l~~~~~~ll 171 (221)
++++...|+.+.... ....++||+|+++++++..... ..+++.+.++|
T Consensus 80 -----~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 154 (215)
T 4dzr_A 80 -----VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVL 154 (215)
T ss_dssp --------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGB
T ss_pred -----ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHh
Confidence 345555454431100 0113789999999887654332 67778888899
Q ss_pred CCCeE-EEEEEEecChhHHHHHHHHHhcCCeE
Q 027594 172 GPKTT-ILLGYEIRSTSVHEQMLQMWKSNFNV 202 (221)
Q Consensus 172 ~~~g~-~~i~~~~r~~~~~~~~~~~~~~~f~v 202 (221)
+|||. +++............++..++.+|..
T Consensus 155 kpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~ 186 (215)
T 4dzr_A 155 ARGRAGVFLEVGHNQADEVARLFAPWRERGFR 186 (215)
T ss_dssp CSSSEEEEEECTTSCHHHHHHHTGGGGGGTEE
T ss_pred cCCCeEEEEEECCccHHHHHHHHHHhhcCCce
Confidence 99999 55544433333233333322346643
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-14 Score=110.70 Aligned_cols=129 Identities=17% Similarity=0.044 Sum_probs=95.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||||||+|..++.+++. +.+|+++|. +.+++.+++|+..+++ .++.+...|+..... ..
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~------------~~v~~~~~d~~~~~~-~~ 107 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------------PNIKLLWVDGSDLTD-YF 107 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------------SSEEEEECCSSCGGG-TS
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC------------CCEEEEeCCHHHHHh-hc
Confidence 4679999999999999999987 468999998 5699999999998874 578888876654211 12
Q ss_pred cCCCccEEEEcccccCCc--------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEecC
Q 027594 141 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 207 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~--------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~ 207 (221)
..++||+|+++.+..+.. ....++..+.++|+|||.+++.... ....+...+.+. .+|.+..+..
T Consensus 108 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~ 181 (214)
T 1yzh_A 108 EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN--RGLFEYSLVSFSQYGMKLNGVWL 181 (214)
T ss_dssp CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC--HHHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC--HHHHHHHHHHHHHCCCeeeeccc
Confidence 356899999986543221 2467999999999999999886532 223344445554 4888876654
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-15 Score=115.86 Aligned_cols=110 Identities=13% Similarity=0.221 Sum_probs=85.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++++|||+|||+|..++.+++.+ .+|+++|. +++++.+++|+..+++ .+++.+...|+.+. .+
T Consensus 29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~--~~ 95 (177)
T 2esr_A 29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----------ENRFTLLKMEAERA--ID 95 (177)
T ss_dssp CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----------GGGEEEECSCHHHH--HH
T ss_pred hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECcHHHh--HH
Confidence 3467899999999999999999886 48999998 5699999999998875 24677777665442 11
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHH--HhcCCCeEEEEEEEecC
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIF--ALSGPKTTILLGYEIRS 185 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~--~ll~~~g~~~i~~~~r~ 185 (221)
....+||+|++++++ .......++..+. ++|+|||.+++....+.
T Consensus 96 ~~~~~fD~i~~~~~~-~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 96 CLTGRFDLVFLDPPY-AKETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp HBCSCEEEEEECCSS-HHHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred hhcCCCCEEEECCCC-CcchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 224579999998764 3455677778887 88999999998776543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.59 E-value=1e-14 Score=117.14 Aligned_cols=130 Identities=12% Similarity=0.014 Sum_probs=97.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||||||+|..+..+++.+ .+|+++|. +.+++.+++++..++. .++.+...|+... ...
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~---~~~ 143 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------------RVRNYFCCGLQDF---TPE 143 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG------------GEEEEEECCGGGC---CCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC------------ceEEEEEcChhhc---CCC
Confidence 57899999999999999988775 48999998 5699999998876632 3567777665433 223
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHh-cCCeEEEec
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~r~~------------~~~~~~~~~~~-~~f~v~~v~ 206 (221)
.++||+|+++.++++... ...+++.+.++|+|||.+++....... ...+.+.+.++ .+|++..+.
T Consensus 144 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 144 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 568999999999988665 568999999999999999987643221 02355666664 589886664
Q ss_pred CC
Q 027594 207 KA 208 (221)
Q Consensus 207 ~~ 208 (221)
..
T Consensus 224 ~~ 225 (241)
T 2ex4_A 224 RQ 225 (241)
T ss_dssp EC
T ss_pred ec
Confidence 43
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=124.23 Aligned_cols=119 Identities=18% Similarity=0.178 Sum_probs=91.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||||||+|..++.+++. +.+|+++|+ +.+++.+++|++.+...... .....++.+...|+.+...
T Consensus 81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g----~~~~~~v~~~~~d~~~l~~ 156 (383)
T 4fsd_A 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFG----SPSRSNVRFLKGFIENLAT 156 (383)
T ss_dssp GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHS----STTCCCEEEEESCTTCGGG
T ss_pred CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhccc----ccCCCceEEEEccHHHhhh
Confidence 457889999999999999999875 458999998 56999999998876310000 0002478888866654321
Q ss_pred c---cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 138 I---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 138 ~---~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
. +...++||+|+++.++++..+...+++.+.++|+|||.+++.....
T Consensus 157 ~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 157 AEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred cccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 1 3446799999999999998899999999999999999999876543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-14 Score=115.35 Aligned_cols=107 Identities=18% Similarity=0.208 Sum_probs=88.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|..+..+++.+++|+++|. +.+++.+++++ ... ..++.+...|+.. .+.
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~------------~~~~~~~~~d~~~---~~~ 100 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGV------------DRKVQVVQADARA---IPL 100 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTS------------CTTEEEEESCTTS---CCS
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hcc------------CCceEEEEccccc---CCC
Confidence 346789999999999999999998999999998 56999999887 222 2568888766543 333
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
..++||+|+++.++++..+...+++.+.++|+|||.+++.....
T Consensus 101 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (263)
T 2yqz_A 101 PDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQA 144 (263)
T ss_dssp CTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCC
Confidence 46789999999999998889999999999999999998875443
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=118.64 Aligned_cols=123 Identities=17% Similarity=0.261 Sum_probs=93.7
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
+.+..+.+++.+.. . .++.+|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..++.
T Consensus 93 ~~te~l~~~~l~~~-------~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~------ 158 (276)
T 2b3t_A 93 PDTECLVEQALARL-------P-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------ 158 (276)
T ss_dssp TTHHHHHHHHHHHS-------C-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------
T ss_pred chHHHHHHHHHHhc-------c-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------
Confidence 34666777776652 1 35679999999999999999965 678999998 5699999999998875
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC-------------------------cCHHHHHHHHHHhc
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-------------------------HLLEPLLQTIFALS 171 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~-------------------------~~~~~l~~~~~~ll 171 (221)
.++.+...|+... ...++||+|++++++... .....++..+.++|
T Consensus 159 ------~~v~~~~~d~~~~----~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~L 228 (276)
T 2b3t_A 159 ------KNIHILQSDWFSA----LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL 228 (276)
T ss_dssp ------CSEEEECCSTTGG----GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGE
T ss_pred ------CceEEEEcchhhh----cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence 3688887666442 125689999999776543 23567888899999
Q ss_pred CCCeEEEEEEEecCh
Q 027594 172 GPKTTILLGYEIRST 186 (221)
Q Consensus 172 ~~~g~~~i~~~~r~~ 186 (221)
+|||.+++.......
T Consensus 229 kpgG~l~~~~~~~~~ 243 (276)
T 2b3t_A 229 VSGGFLLLEHGWQQG 243 (276)
T ss_dssp EEEEEEEEECCSSCH
T ss_pred CCCCEEEEEECchHH
Confidence 999999887554443
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-15 Score=120.13 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=85.2
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCC
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLL 122 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~ 122 (221)
.+.++|.+.. ..+.+|||||||+|..+..++..+.+|+++|.+ .|++.+++ .
T Consensus 28 ~l~~~l~~~~---------~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~------------------~ 80 (257)
T 4hg2_A 28 ALFRWLGEVA---------PARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR------------------H 80 (257)
T ss_dssp HHHHHHHHHS---------SCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC------------------C
T ss_pred HHHHHHHHhc---------CCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh------------------c
Confidence 4567777652 134689999999999999999999999999984 57765542 1
Q ss_pred CceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 123 ~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.++.+...+ .+.++..+++||+|+++.++++. +.+.+++.+.++|||||.+.+....
T Consensus 81 ~~v~~~~~~---~e~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~ 137 (257)
T 4hg2_A 81 PRVTYAVAP---AEDTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYG 137 (257)
T ss_dssp TTEEEEECC---TTCCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCceeehhh---hhhhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECC
Confidence 357777744 34455567899999999998776 4788999999999999998776543
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-15 Score=114.12 Aligned_cols=107 Identities=21% Similarity=0.163 Sum_probs=83.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-cccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~~ 141 (221)
++++|||+|||+|..++.+++.+++|+++|. +++++.+++|+..++. ++++...|+.+... ....
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~~~~~~~ 107 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL-------------GARVVALPVEVFLPEAKAQ 107 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC-------------CCEEECSCHHHHHHHHHHT
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC-------------ceEEEeccHHHHHHhhhcc
Confidence 6789999999999999999999999999998 5699999999998762 46777655543211 1111
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHH--HhcCCCeEEEEEEEecC
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIF--ALSGPKTTILLGYEIRS 185 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~--~ll~~~g~~~i~~~~r~ 185 (221)
..+||+|+++++++ ...+.+++.+. ++|+|||.+++......
T Consensus 108 ~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 108 GERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp TCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred CCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 34799999988755 66677888887 89999999998776544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=111.91 Aligned_cols=135 Identities=15% Similarity=0.118 Sum_probs=98.6
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCC
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL 121 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~ 121 (221)
..+..++.+.. ...++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|+..++.
T Consensus 19 ~~~~~~~~~~~-------~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----------- 80 (192)
T 1l3i_A 19 MEVRCLIMCLA-------EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL----------- 80 (192)
T ss_dssp HHHHHHHHHHH-------CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHhc-------CCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCC-----------
Confidence 34455555442 3447789999999999999999988889999998 6699999999988764
Q ss_pred CCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCC
Q 027594 122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNF 200 (221)
Q Consensus 122 ~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f 200 (221)
..++.+...|+... .+ ...+||+|+++.++. ....+++.+.++|+|||.+++...... ....+.+.++ .+|
T Consensus 81 ~~~~~~~~~d~~~~--~~-~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~~--~~~~~~~~l~~~g~ 152 (192)
T 1l3i_A 81 GDNVTLMEGDAPEA--LC-KIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILLE--TKFEAMECLRDLGF 152 (192)
T ss_dssp CTTEEEEESCHHHH--HT-TSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBHH--HHHHHHHHHHHTTC
T ss_pred CcceEEEecCHHHh--cc-cCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecCcc--hHHHHHHHHHHCCC
Confidence 35678877665431 11 125899999987653 568999999999999999988765432 2345555554 356
Q ss_pred eEE
Q 027594 201 NVK 203 (221)
Q Consensus 201 ~v~ 203 (221)
.++
T Consensus 153 ~~~ 155 (192)
T 1l3i_A 153 DVN 155 (192)
T ss_dssp CCE
T ss_pred ceE
Confidence 544
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.9e-14 Score=118.13 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=85.3
Q ss_pred CCCeEEEeCCCccHHHHHHHH---hCCEEEEecc-hhhHHHHHHHHHHh-hhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMAL---LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~---~ga~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++.+|||||||+|..+..+++ .+.+|+++|. +.+++.+++++..+ +. ..++++...|+.+..
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----------~~~v~~~~~d~~~~~-- 102 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-----------YKNVSFKISSSDDFK-- 102 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-----------CTTEEEEECCTTCCG--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------CCceEEEEcCHHhCC--
Confidence 678999999999999999994 5678999998 56999999998876 22 357888887665432
Q ss_pred cccC------CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 KAVA------PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ~~~~------~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
... ++||+|+++.++++. +...+++.+.++|+|||.+++
T Consensus 103 -~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i 147 (299)
T 3g5t_A 103 -FLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAI 147 (299)
T ss_dssp -GGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred -ccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEE
Confidence 233 789999999999999 999999999999999999887
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-14 Score=111.19 Aligned_cols=106 Identities=12% Similarity=0.179 Sum_probs=84.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.+|||+|||+|..+..+++. +.+|+++|. +.+++.+++++..+ .++.+...|..+.
T Consensus 42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~--- 104 (234)
T 3dtn_A 42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--------------LKVKYIEADYSKY--- 104 (234)
T ss_dssp SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--------------TTEEEEESCTTTC---
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--------------CCEEEEeCchhcc---
Confidence 446789999999999999999988 779999998 56999998876543 2577777555433
Q ss_pred cccCCCccEEEEcccccCCcCHH--HHHHHHHHhcCCCeEEEEEEEecC
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~--~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
+. .++||+|+++.++++..... .+++.+.++|+|||.++++.....
T Consensus 105 ~~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 105 DF-EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp CC-CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred CC-CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 22 27899999999999876544 599999999999999999875543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.57 E-value=2e-14 Score=113.47 Aligned_cols=127 Identities=14% Similarity=0.167 Sum_probs=94.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-cc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~-~~ 141 (221)
++.+|||+|||+|..+..+++.|++|+++|+ +.+++.++++ . ++.+...+..+....+ ..
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~---------------~~~~~~~~~~~~~~~~~~~ 113 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA---G---------------AGEVHLASYAQLAEAKVPV 113 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT---C---------------SSCEEECCHHHHHTTCSCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh---c---------------ccccchhhHHhhccccccc
Confidence 5689999999999999999999999999998 5699988876 1 2344444443331112 22
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh-----------------------------hHHHHH
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-----------------------------SVHEQM 192 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~-----------------------------~~~~~~ 192 (221)
..+||+|+++.+++ ..+...+++.+.++|+|||.+++....... ...+.+
T Consensus 114 ~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (227)
T 3e8s_A 114 GKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASW 192 (227)
T ss_dssp CCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHH
T ss_pred CCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHH
Confidence 45699999999999 788899999999999999999987642110 024566
Q ss_pred HHHHh-cCCeEEEecCCC
Q 027594 193 LQMWK-SNFNVKLVPKAK 209 (221)
Q Consensus 193 ~~~~~-~~f~v~~v~~~~ 209 (221)
.+.++ .+|++..+....
T Consensus 193 ~~~l~~aGf~~~~~~~~~ 210 (227)
T 3e8s_A 193 LNALDMAGLRLVSLQEPQ 210 (227)
T ss_dssp HHHHHHTTEEEEEEECCC
T ss_pred HHHHHHcCCeEEEEecCC
Confidence 66665 589998877643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-14 Score=131.33 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=107.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+|++|||+|||||..++.+++.|+. |+++|. +.+++.+++|++.|++. .+++++...|..+. +...
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~----------~~~v~~i~~D~~~~--l~~~ 606 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT----------GRAHRLIQADCLAW--LREA 606 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----------STTEEEEESCHHHH--HHHC
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHH--HHhc
Confidence 6889999999999999999998885 999998 56999999999999861 14788888655432 1223
Q ss_pred CCCccEEEEcccccCC-----------cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecCCCC
Q 027594 142 APPFDYIIGTDVVYAE-----------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKE 210 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~-----------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~~~~ 210 (221)
..+||+|+++++.|.. .....++..+.++|+|||.++++...+........+. +.+++++.+....+
T Consensus 607 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~--~~g~~~~~i~~~~l 684 (703)
T 3v97_A 607 NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLA--KLGLKAQEITQKTL 684 (703)
T ss_dssp CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHH--HTTEEEEECTTTTC
T ss_pred CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHH--HcCCceeeeeeccC
Confidence 5689999998886531 3466788889999999999998776654433232222 35788889999999
Q ss_pred CcccCCCC
Q 027594 211 STMWGNPL 218 (221)
Q Consensus 211 ~~~~~~~~ 218 (221)
+..|....
T Consensus 685 p~df~~~~ 692 (703)
T 3v97_A 685 SQDFARNR 692 (703)
T ss_dssp CGGGTTCS
T ss_pred CCCCCCCC
Confidence 98886543
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.2e-15 Score=120.81 Aligned_cols=112 Identities=16% Similarity=0.157 Sum_probs=86.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||||||+|..++.++..|++|+++|+ +.+++.+++++....... ...++.+...++..........
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~ 128 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEP--------AFDKWVIEEANWLTLDKDVPAG 128 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSH--------HHHTCEEEECCGGGHHHHSCCT
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhccccc--------ccceeeEeecChhhCccccccC
Confidence 5789999999999999999999999999998 569999999875433210 0134666665554321000346
Q ss_pred CCccEEEEc-ccccCCcC-------HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGT-DVVYAEHL-------LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~-d~~y~~~~-------~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|+++ .++++... ...+++.+.++|+|||.+++....
T Consensus 129 ~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 129 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp TCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 789999998 88888777 999999999999999999987654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=121.22 Aligned_cols=103 Identities=23% Similarity=0.271 Sum_probs=84.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++++|||+|||+|.+++.+++.|+ +|+++|.+++++.++++++.|+. .+++++...|..+ ...
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~---~~~ 101 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGF-----------SDKITLLRGKLED---VHL 101 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTT---SCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCC-----------CCCEEEEECchhh---ccC
Confidence 34678999999999999999999887 79999987799999999999876 4578888755433 333
Q ss_pred cCCCccEEEEccccc---CCcCHHHHHHHHHHhcCCCeEEE
Q 027594 141 VAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y---~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
+.++||+|++..+.| +......++..+.++|+|||.++
T Consensus 102 ~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 347899999986544 46678899999999999999987
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.56 E-value=4.9e-14 Score=112.68 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=83.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..+..+++.+.+|+++|. +.+++.+++++..++. ++.+...|..... . .
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~---~-~ 99 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-------------KPRLACQDISNLN---I-N 99 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEECCCGGGCC---C-S
T ss_pred CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC-------------CeEEEecccccCC---c-c
Confidence 6789999999999999999999999999998 5699999998876542 4677665554332 2 2
Q ss_pred CCccEEEEcc-cccCC---cCHHHHHHHHHHhcCCCeEEEEE
Q 027594 143 PPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 143 ~~fD~Vi~~d-~~y~~---~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
++||+|+++. ++++. .....+++.+.++|+|||.+++.
T Consensus 100 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 141 (246)
T 1y8c_A 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 7899999997 98876 67888999999999999999874
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.3e-14 Score=113.19 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=106.4
Q ss_pred ccceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC--EEEEecc-hhhHHHHHHHHHHh
Q 027594 34 LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWN 108 (221)
Q Consensus 34 ~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga--~v~~~D~-~~~l~~~~~n~~~n 108 (221)
...+.|+-.. .||..|...+.. -...+|.+|||||||+|..+..+|.. |. +|+++|+ +++++.++++++..
T Consensus 50 ~e~r~w~p~rsklaa~i~~gl~~----l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~ 125 (233)
T 4df3_A 50 EEYREWNAYRSKLAAALLKGLIE----LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR 125 (233)
T ss_dssp EEEEECCTTTCHHHHHHHTTCSC----CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC
T ss_pred ceeeeECCCchHHHHHHHhchhh----cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh
Confidence 3668888644 466666544211 24568999999999999999999975 54 6999998 66999988876543
Q ss_pred hhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh-
Q 027594 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS- 187 (221)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~- 187 (221)
.++..+..+-............+|+|++ ++ .++.....++..+.+.|||||.++++...+..+
T Consensus 126 --------------~ni~~V~~d~~~p~~~~~~~~~vDvVf~-d~-~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~ 189 (233)
T 4df3_A 126 --------------RNIFPILGDARFPEKYRHLVEGVDGLYA-DV-AQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDV 189 (233)
T ss_dssp --------------TTEEEEESCTTCGGGGTTTCCCEEEEEE-CC-CCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHH
T ss_pred --------------cCeeEEEEeccCccccccccceEEEEEE-ec-cCChhHHHHHHHHHHhccCCCEEEEEEecccCCC
Confidence 3567766555554444445678999885 44 444567789999999999999999987665532
Q ss_pred ------HHHHHHHHH-hcCCeEEEe
Q 027594 188 ------VHEQMLQMW-KSNFNVKLV 205 (221)
Q Consensus 188 ------~~~~~~~~~-~~~f~v~~v 205 (221)
.+..-.+.+ +.+|++.+.
T Consensus 190 ~~p~~~~~~~ev~~L~~~GF~l~e~ 214 (233)
T 4df3_A 190 TTEPSEVYKREIKTLMDGGLEIKDV 214 (233)
T ss_dssp HTCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred CCChHHHHHHHHHHHHHCCCEEEEE
Confidence 233333444 358987543
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=112.99 Aligned_cols=104 Identities=11% Similarity=0.067 Sum_probs=83.6
Q ss_pred CCCeEEEeCCCccHHH-HHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAG-FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~-l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||+|||+|..+ ..++..+.+|+++|. +.+++.+++++..++ .++.+...|... .+..
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~---~~~~ 86 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN-------------FKLNISKGDIRK---LPFK 86 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT-------------CCCCEEECCTTS---CCSC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEECchhh---CCCC
Confidence 5689999999999874 455677889999998 569999999988764 246676655543 3334
Q ss_pred CCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.++||+|+++.++++. .....+++.+.++|+|||.+++....
T Consensus 87 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 130 (209)
T 2p8j_A 87 DESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT 130 (209)
T ss_dssp TTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 5789999999998886 67889999999999999999987754
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.4e-15 Score=123.01 Aligned_cols=121 Identities=15% Similarity=0.242 Sum_probs=85.7
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccC----------------------
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---------------------- 115 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---------------------- 115 (221)
..+++++|||||||+|..++.+++. +++|+++|+ +.+++.+++|+..+.......
T Consensus 43 ~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (292)
T 3g07_A 43 EWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRK 122 (292)
T ss_dssp GGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC--------------------------------
T ss_pred hhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 4467899999999999999999987 678999998 569999999877654210000
Q ss_pred ------------------------CCCCCCCCceEEEEEEecCCCC--ccccCCCccEEEEcccccCC------cCHHHH
Q 027594 116 ------------------------NPGSDLLGSIQAVELDWGNEDH--IKAVAPPFDYIIGTDVVYAE------HLLEPL 163 (221)
Q Consensus 116 ------------------------~~~~~~~~~v~~~~~dw~~~~~--~~~~~~~fD~Vi~~d~~y~~------~~~~~l 163 (221)
........+|++...|+..... .....++||+|++..++.+. .....+
T Consensus 123 ~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~ 202 (292)
T 3g07_A 123 RSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRM 202 (292)
T ss_dssp -------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHH
Confidence 0000012578999888765431 11246789999999987443 378889
Q ss_pred HHHHHHhcCCCeEEEEEE
Q 027594 164 LQTIFALSGPKTTILLGY 181 (221)
Q Consensus 164 ~~~~~~ll~~~g~~~i~~ 181 (221)
++.+.++|+|||.+++..
T Consensus 203 l~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 203 FRRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHhCCCcEEEEec
Confidence 999999999999998853
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.6e-14 Score=116.83 Aligned_cols=105 Identities=17% Similarity=0.145 Sum_probs=88.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.++.. +++|+++|. +.+++.+++++..+. .++++...|..+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------------~~v~~~~~d~~~--- 83 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------------YDSEFLEGDATE--- 83 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-------------SEEEEEESCTTT---
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEEcchhh---
Confidence 446789999999999999999986 679999998 569999999887654 267777765543
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.+. .++||+|+++.++++..+...+++.+.++|+|||.+++..+.
T Consensus 84 ~~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 84 IEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred cCc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 222 468999999999999999999999999999999999987654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=111.19 Aligned_cols=108 Identities=14% Similarity=0.064 Sum_probs=83.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+|||+|||+|..++.+++. + .+|+++|. +++++.+++|++.++. .+++++...|..+...
T Consensus 21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~- 88 (197)
T 3eey_A 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----------IDRVTLIKDGHQNMDK- 88 (197)
T ss_dssp CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----------GGGEEEECSCGGGGGG-
T ss_pred CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCeEEEECCHHHHhh-
Confidence 36789999999999999999876 3 58999998 5699999999998865 3568888766543321
Q ss_pred cccCCCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 139 KAVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...++||+|+++.+++.. .....+++.+.++|+|||.+++....
T Consensus 89 -~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 89 -YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp -TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred -hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 234789999998766321 13456899999999999999887643
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.6e-14 Score=111.59 Aligned_cols=102 Identities=16% Similarity=0.047 Sum_probs=79.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++++|||||||+|..+..+++.|++|+++|. +++++.++++ +.+...|..+.. .+.
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--------------------~~~~~~d~~~~~-~~~ 97 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--------------------FNVVKSDAIEYL-KSL 97 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--------------------SEEECSCHHHHH-HTS
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------------------cceeeccHHHHh-hhc
Confidence 346789999999999999999999999999998 5588888765 133332222210 022
Q ss_pred cCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
..++||+|+++.++++.. ....+++.+.++|+|||.+++.....
T Consensus 98 ~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (240)
T 3dli_A 98 PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP 143 (240)
T ss_dssp CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 457899999999999876 66999999999999999999877653
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=113.46 Aligned_cols=129 Identities=18% Similarity=0.172 Sum_probs=90.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
++++|||||||+|..++.+|+. +++|+++|. +++++.+++|++.++. .+++++...|..+... .
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~l~~~ 126 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----------QDKVTILNGASQDLIPQL 126 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHGGGT
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----------CCceEEEECCHHHHHHHH
Confidence 5689999999999999999974 678999998 6699999999999876 3568888866533211 1
Q ss_pred c--ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh--cCCeEEEec
Q 027594 139 K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK--SNFNVKLVP 206 (221)
Q Consensus 139 ~--~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~--~~f~v~~v~ 206 (221)
. ....+||+|++.....+......++..+ ++|+|||.+++........ ..|.+.++ ..|+...++
T Consensus 127 ~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~--~~~~~~l~~~~~~~~~~~~ 195 (221)
T 3u81_A 127 KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPGT--PDFLAYVRGSSSFECTHYS 195 (221)
T ss_dssp TTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCCC--HHHHHHHHHCTTEEEEEEE
T ss_pred HHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcch--HHHHHHHhhCCCceEEEcc
Confidence 0 0126899999876554443344566666 8999999988755443322 45555553 256555443
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.3e-15 Score=121.89 Aligned_cols=146 Identities=14% Similarity=0.169 Sum_probs=94.0
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhcc---------ccCCCCCC--------C
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRI---------SQMNPGSD--------L 121 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~---------~~~~~~~~--------~ 121 (221)
...++++|||||||+|..++.++..|+ +|+++|+ +.|++.++++++.+.... .......+ .
T Consensus 52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T 2a14_A 52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL 131 (263)
T ss_dssp TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence 355788999999999999888888887 5999998 559999999876542100 00000000 0
Q ss_pred CCceE-EEEEEecCCCCcc-ccCCCccEEEEcccccCC----cCHHHHHHHHHHhcCCCeEEEEEEEecCh---------
Q 027594 122 LGSIQ-AVELDWGNEDHIK-AVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIRST--------- 186 (221)
Q Consensus 122 ~~~v~-~~~~dw~~~~~~~-~~~~~fD~Vi~~d~~y~~----~~~~~l~~~~~~ll~~~g~~~i~~~~r~~--------- 186 (221)
..++. +...|........ ...++||+|+++-++++. ++...+++.+.++|||||.++++......
T Consensus 132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~ 211 (263)
T 2a14_A 132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF 211 (263)
T ss_dssp HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred HhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEe
Confidence 01233 5555544322111 124689999999988752 45567888889999999999998632210
Q ss_pred ----hHHHHHHHHHh-cCCeEEEec
Q 027594 187 ----SVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 187 ----~~~~~~~~~~~-~~f~v~~v~ 206 (221)
-..+.+.+.+. .+|++..+.
T Consensus 212 ~~~~~~~~~l~~~l~~aGF~i~~~~ 236 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAGFDIEQLL 236 (263)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred eccccCHHHHHHHHHHCCCEEEEEe
Confidence 02345566664 589886554
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.1e-14 Score=113.87 Aligned_cols=102 Identities=18% Similarity=0.162 Sum_probs=84.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||||||+|..+..+++.+. +|+++|. +.+++.++++... .++.+...|.... +.
T Consensus 42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------~~~~~~~~d~~~~---~~ 103 (243)
T 3bkw_A 42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---------------TGITYERADLDKL---HL 103 (243)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---------------SSEEEEECCGGGC---CC
T ss_pred cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---------------CCceEEEcChhhc---cC
Confidence 3678999999999999999999898 8999998 5699988876432 2467777655443 23
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
...+||+|+++.++++..+...+++.+.++|+|||.+++...
T Consensus 104 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 104 PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence 457899999999999988999999999999999999998763
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-14 Score=106.92 Aligned_cols=132 Identities=15% Similarity=0.154 Sum_probs=91.7
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
+.+..+.+++... ..++.+|||+|||+|..++.+++.+ +|+++|+ +.+++. .
T Consensus 8 ~~~~~l~~~l~~~---------~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~------~----------- 60 (170)
T 3q87_B 8 EDTYTLMDALERE---------GLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES------H----------- 60 (170)
T ss_dssp HHHHHHHHHHHHH---------TCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT------C-----------
T ss_pred ccHHHHHHHHHhh---------cCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc------c-----------
Confidence 4456677776531 2356799999999999999999999 9999998 557776 1
Q ss_pred CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC---------HHHHHHHHHHhcCCCeEEEEEEEecChhHH
Q 027594 119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------LEPLLQTIFALSGPKTTILLGYEIRSTSVH 189 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~---------~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~ 189 (221)
.++.+...|+.+. ...++||+|+++++++.... ...++..+.+.+ |||.+++....... .
T Consensus 61 ----~~~~~~~~d~~~~----~~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~--~ 129 (170)
T 3q87_B 61 ----RGGNLVRADLLCS----INQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR--P 129 (170)
T ss_dssp ----SSSCEEECSTTTT----BCGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC--H
T ss_pred ----cCCeEEECChhhh----cccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC--H
Confidence 2467777555432 22378999999988775332 245667777777 99999987755432 2
Q ss_pred HHHHHHHh-cCCeEEEecCCC
Q 027594 190 EQMLQMWK-SNFNVKLVPKAK 209 (221)
Q Consensus 190 ~~~~~~~~-~~f~v~~v~~~~ 209 (221)
+.+.+.++ .+|++..+....
T Consensus 130 ~~l~~~l~~~gf~~~~~~~~~ 150 (170)
T 3q87_B 130 KEVLARLEERGYGTRILKVRK 150 (170)
T ss_dssp HHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEeec
Confidence 45555554 488886665443
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-14 Score=111.46 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=83.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|..+..+++.+++|+++|. +.+++.+++ ++ ..++.+...|..+. .
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~------------~~~~~~~~~d~~~~----~ 103 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HG------------LDNVEFRQQDLFDW----T 103 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GC------------CTTEEEEECCTTSC----C
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cC------------CCCeEEEecccccC----C
Confidence 345679999999999999999999999999998 568888886 22 14678887665433 3
Q ss_pred cCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..++||+|+++.++++... ...+++.+.++|+|||.+++....
T Consensus 104 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 148 (218)
T 3ou2_A 104 PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT 148 (218)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 4679999999999998766 488999999999999999988653
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.2e-14 Score=109.33 Aligned_cols=101 Identities=18% Similarity=0.100 Sum_probs=82.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++|+..++. .++++...|+.... .
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~---~ 139 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDL------------HNVSTRHGDGWQGW---Q 139 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGCC---G
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC------------CceEEEECCcccCC---c
Confidence 447889999999999999999999999999998 6699999999998774 46888886665432 2
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...+||+|+++.++.+... .+.++|+|||++++....
T Consensus 140 ~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 140 ARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred cCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 3568999999988776443 578899999999987765
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=111.06 Aligned_cols=100 Identities=12% Similarity=-0.033 Sum_probs=83.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||||||+|..+..++.. +.+|+++|. +.+++.++++ . .++.+...|.... +
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~------------~~~~~~~~d~~~~---~ 91 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----L------------PNTNFGKADLATW---K 91 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----S------------TTSEEEECCTTTC---C
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----C------------CCcEEEECChhhc---C
Confidence 46789999999999999999987 889999998 5699988876 1 2467777555432 2
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...+||+|+++.++++..+...+++.+.++|+|||.+++....
T Consensus 92 -~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 92 -PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp -CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred -ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 3678999999999999989999999999999999999987753
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=118.17 Aligned_cols=113 Identities=17% Similarity=0.072 Sum_probs=85.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCC-ceEEEEEEecCCCC-c
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG-SIQAVELDWGNEDH-I 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~-~v~~~~~dw~~~~~-~ 138 (221)
.++++|||+|||+|..++.+|+.|+ +|+++|. +.+++.+++|++.|++ .+ ++++...|..+... .
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~-----------~~~~v~~~~~D~~~~l~~~ 279 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL-----------DMANHQLVVMDVFDYFKYA 279 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC-----------CCTTEEEEESCHHHHHHHH
T ss_pred cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CccceEEEECCHHHHHHHH
Confidence 3678999999999999999999887 7999998 5699999999999986 23 78888866543211 1
Q ss_pred cccCCCccEEEEcccccC-----C----cCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 139 KAVAPPFDYIIGTDVVYA-----E----HLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~-----~----~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
.....+||+|+++++.+. . ..+..++..+.++|+|||.++++......
T Consensus 280 ~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~ 336 (385)
T 2b78_A 280 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANM 336 (385)
T ss_dssp HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred HHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence 112458999999888752 1 12445677778999999999988765553
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-14 Score=114.07 Aligned_cols=121 Identities=12% Similarity=0.025 Sum_probs=88.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+.+|||||||+|..++.+|+.. ..|+++|. +++++.+++|++.+++ .++.+...|..+......
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l------------~nv~~~~~Da~~~l~~~~ 101 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL------------SNLRVMCHDAVEVLHKMI 101 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC------------SSEEEECSCHHHHHHHHS
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHc
Confidence 56799999999999999999874 56999998 5699999999998875 468887755433211012
Q ss_pred cCCCccEEEEc--ccccCCcCH------HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc
Q 027594 141 VAPPFDYIIGT--DVVYAEHLL------EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 198 (221)
Q Consensus 141 ~~~~fD~Vi~~--d~~y~~~~~------~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~ 198 (221)
..++||.|+++ ++....... ..+++.+.++|+|||.++++.... ...+...+.+..
T Consensus 102 ~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~--~~~~~~~~~~~~ 165 (218)
T 3dxy_A 102 PDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE--PYAEHMLEVMSS 165 (218)
T ss_dssp CTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHHT
T ss_pred CCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH--HHHHHHHHHHHh
Confidence 46789999988 555443332 259999999999999998876432 233444555544
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.53 E-value=6e-14 Score=112.99 Aligned_cols=129 Identities=11% Similarity=0.016 Sum_probs=96.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||||||+|..+..++..+ .+|+++|. +.+++.+++++..+ .++.+...|+... +.
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~---~~ 154 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--------------PVGKFILASMETA---TL 154 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--------------SEEEEEESCGGGC---CC
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--------------CceEEEEccHHHC---CC
Confidence 367899999999999999998775 46999998 56999999876543 3577777665443 23
Q ss_pred cCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEecCh-------------hHHHHHHHHHh-cCCeEEE
Q 027594 141 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~r~~-------------~~~~~~~~~~~-~~f~v~~ 204 (221)
..++||+|+++.++++. .....+++.+.++|+|||.+++....... ...+.+.+.++ .+|++..
T Consensus 155 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~ 234 (254)
T 1xtp_A 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVK 234 (254)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEE
Confidence 45789999999999987 56889999999999999999997742110 01245555554 5898766
Q ss_pred ecCC
Q 027594 205 VPKA 208 (221)
Q Consensus 205 v~~~ 208 (221)
+...
T Consensus 235 ~~~~ 238 (254)
T 1xtp_A 235 EAFQ 238 (254)
T ss_dssp EEEC
T ss_pred eeec
Confidence 5443
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=117.21 Aligned_cols=107 Identities=18% Similarity=0.194 Sum_probs=83.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||||||+|..+..+++.|.+|+++|+ +.+++.+++++..++... ..++.+...|..+.. . .
T Consensus 82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---------~~~v~~~~~d~~~~~---~-~ 148 (299)
T 3g2m_A 82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADV---------RDRCTLVQGDMSAFA---L-D 148 (299)
T ss_dssp CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHH---------HTTEEEEECBTTBCC---C-S
T ss_pred CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhccccc---------ccceEEEeCchhcCC---c-C
Confidence 3459999999999999999999999999998 569999999988764210 146888886665432 2 5
Q ss_pred CCccEEEEc-ccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGT-DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~-d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|+++ .++++.+ ....+++.+.++|+|||.+++....
T Consensus 149 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 149 KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp CCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 789999865 5555443 4689999999999999999987643
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.53 E-value=5.3e-14 Score=119.36 Aligned_cols=106 Identities=16% Similarity=0.168 Sum_probs=85.0
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...++++|||||||+|.+++.+++.|+ +|+++|.+++++.++++++.|++ .+++++...|+.+..
T Consensus 47 ~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l-----------~~~v~~~~~d~~~~~--- 112 (348)
T 2y1w_A 47 TDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNL-----------TDRIVVIPGKVEEVS--- 112 (348)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC---
T ss_pred ccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcchhhCC---
Confidence 345788999999999999999999876 89999986688999999998875 467888886654432
Q ss_pred ccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. .++||+|++..+.++. +.....+..+.++|+|||.+++..
T Consensus 113 ~-~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 113 L-PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp C-SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred C-CCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence 2 3589999999887753 455677778889999999988643
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=116.51 Aligned_cols=107 Identities=14% Similarity=0.045 Sum_probs=86.3
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||+|||+|..+..+++.+. +|+++|. +.+++.+++++..++. ..++.+...|.... +.
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---~~ 128 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----------RFKVFFRAQDSYGR---HM 128 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----------SSEEEEEESCTTTS---CC
T ss_pred CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CccEEEEECCcccc---cc
Confidence 3678999999999999998888876 8999998 5699999998887653 24677777555433 22
Q ss_pred -cCCCccEEEEcccccC----CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 -VAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 -~~~~fD~Vi~~d~~y~----~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..++||+|+++.++++ ......+++.+.++|+|||.+++..+.
T Consensus 129 ~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 129 DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 3578999999998865 456788999999999999999987765
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=116.37 Aligned_cols=146 Identities=15% Similarity=0.183 Sum_probs=97.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhc---------cccCCCCCCC--------C
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSR---------ISQMNPGSDL--------L 122 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~---------~~~~~~~~~~--------~ 122 (221)
..++++|||||||+|..++.++..+. +|+++|+ +.+++.+++++..+... .......... .
T Consensus 54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 45778999999999999999999888 8999998 56999999887653200 0000000000 0
Q ss_pred Cce-EEEEEEecCCCCc-cccCCCccEEEEccccc----CCcCHHHHHHHHHHhcCCCeEEEEEEEecC-----------
Q 027594 123 GSI-QAVELDWGNEDHI-KAVAPPFDYIIGTDVVY----AEHLLEPLLQTIFALSGPKTTILLGYEIRS----------- 185 (221)
Q Consensus 123 ~~v-~~~~~dw~~~~~~-~~~~~~fD~Vi~~d~~y----~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~----------- 185 (221)
.++ .+...|....... ....++||+|+++.+++ +......+++.+.++|+|||.+++......
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~ 213 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS 213 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence 126 6777665543321 11127899999999998 666788999999999999999988753210
Q ss_pred --hhHHHHHHHHHh-cCCeEEEecC
Q 027594 186 --TSVHEQMLQMWK-SNFNVKLVPK 207 (221)
Q Consensus 186 --~~~~~~~~~~~~-~~f~v~~v~~ 207 (221)
.-..+.+.+.++ .+|++..+..
T Consensus 214 ~~~~~~~~~~~~l~~aGf~~~~~~~ 238 (265)
T 2i62_A 214 SLPLGWETVRDAVEEAGYTIEQFEV 238 (265)
T ss_dssp CCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccccCHHHHHHHHHHCCCEEEEEEE
Confidence 011235555554 5898865543
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-14 Score=111.24 Aligned_cols=117 Identities=17% Similarity=0.290 Sum_probs=88.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|..++.++.. +.+|+++|. +.+++.+++|+..++. .++++...|+....
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~---- 128 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------------ENIEPVQSRVEEFP---- 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------------SSEEEEECCTTTSC----
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEecchhhCC----
Confidence 5789999999999999999976 678999998 5699999999998764 34888886665432
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL 204 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~ 204 (221)
...+||+|+++.+ .....++..+.++|+|||.+++....... +.+ ..+.++|++..
T Consensus 129 ~~~~~D~i~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~~---~~~-~~~~~g~~~~~ 184 (207)
T 1jsx_A 129 SEPPFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYALKGQMPE---DEI-ALLPEEYQVES 184 (207)
T ss_dssp CCSCEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEEESSCCH---HHH-HTSCTTEEEEE
T ss_pred ccCCcCEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEeCCCch---HHH-HHHhcCCceee
Confidence 2468999997542 56789999999999999999886544332 222 22223777654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-13 Score=111.42 Aligned_cols=110 Identities=13% Similarity=0.035 Sum_probs=87.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hh------hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEE
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IE------VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD 131 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~------~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~d 131 (221)
..++.+|||||||+|..+..+++. | .+|+++|. +. +++.+++++..++. .+++++...|
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d 109 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----------GDRLTVHFNT 109 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----------GGGEEEECSC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----------CCceEEEECC
Confidence 347789999999999999999987 4 68999998 44 89999999987664 2467777754
Q ss_pred -ecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 132 -WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 132 -w~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
+. ....+...++||+|+++.++++..+...+++.+..+++|||.+++....
T Consensus 110 ~~~-~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~ 161 (275)
T 3bkx_A 110 NLS-DDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS 161 (275)
T ss_dssp CTT-TCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred hhh-hccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 21 1222334578999999999999888888888888889999999987643
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.2e-14 Score=113.04 Aligned_cols=108 Identities=16% Similarity=-0.039 Sum_probs=84.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~- 139 (221)
..++.+|||||||+|..+..+++.+.+|+++|. +.+++.++++.. ..++++...|..+.....
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~~~~~~ 118 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT---------------AANISYRLLDGLVPEQAAQ 118 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC---------------CTTEEEEECCTTCHHHHHH
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc---------------ccCceEEECcccccccccc
Confidence 446789999999999999999999999999998 569999988752 135777775554321110
Q ss_pred c-cCCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 140 A-VAPPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 140 ~-~~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
. ...+||+|+++.++++.. ....+++.+.++|+|||.+++.....
T Consensus 119 ~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 166 (245)
T 3ggd_A 119 IHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGT 166 (245)
T ss_dssp HHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECT
T ss_pred cccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 0 113599999999999876 78999999999999999988877643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=110.29 Aligned_cols=128 Identities=17% Similarity=0.151 Sum_probs=93.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++|||||||+|..++.+++. +.+|+++|. +++++.+++|++.++. .+++++...|..+.....
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~l~~~ 131 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-----------DQRVTLREGPALQSLESL 131 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHTC
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHhc
Confidence 5789999999999999999986 678999998 6699999999998876 357888886654321111
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHhc--CCeEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNVKLV 205 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------------~~~~~~~~~~~~--~f~v~~v 205 (221)
....+||+|++.. .......+++.+.++|+|||.+++....... ...+.|.+.+.. .|....+
T Consensus 132 ~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 208 (248)
T 3tfw_A 132 GECPAFDLIFIDA---DKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL 208 (248)
T ss_dssp CSCCCCSEEEECS---CGGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred CCCCCeEEEEECC---chHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe
Confidence 1234899999853 3556778999999999999998875443321 124566666543 5665544
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-13 Score=106.84 Aligned_cols=128 Identities=15% Similarity=0.086 Sum_probs=90.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+.+|||||||+|..++.+|+. +.+|+++|+ +++++.+++|++.+++ .++.+...|...... ..
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~------------~nv~~~~~d~~~l~~-~~ 104 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------------QNVKLLNIDADTLTD-VF 104 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------------SSEEEECCCGGGHHH-HC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC------------CCEEEEeCCHHHHHh-hc
Confidence 4679999999999999999987 678999998 5699999999998764 468888766544211 02
Q ss_pred cCCCccEEEEcccccCCc--------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~--------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~ 206 (221)
....||.|+++-+..+.. ....+++.+.++|+|||.+++.... ....+...+.+. .+|....+.
T Consensus 105 ~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~--~~~~~~~~~~~~~~g~~~~~~~ 177 (213)
T 2fca_A 105 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN--RGLFEYSLKSFSEYGLLLTYVS 177 (213)
T ss_dssp CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC--HHHHHHHHHHHHHHTCEEEEEE
T ss_pred CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC--HHHHHHHHHHHHHCCCcccccc
Confidence 356899998763321111 1478999999999999999886533 222333344443 367665543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.6e-13 Score=113.18 Aligned_cols=148 Identities=18% Similarity=0.115 Sum_probs=103.9
Q ss_pred eEEEEEcCeEEEEeeCCCCCcccceec------chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC
Q 027594 13 VINLEVLGHQLQFSQDPNSKHLGTTVW------DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W------~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g 86 (221)
.+.+.+....+.+..+........+-| +-...+++.+.... ...++.+|||+|||+|.+++.++..+
T Consensus 153 ~i~v~i~~d~~~l~~d~sg~~l~~r~yr~~~~a~l~~~la~~l~~~~-------~~~~~~~vLD~gcGsG~~~ie~a~~~ 225 (354)
T 3tma_A 153 RVRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLA-------DARPGMRVLDPFTGSGTIALEAASTL 225 (354)
T ss_dssp EEEEEEETTEEEEEEECCSSCGGGCCGGGCSSCSCCHHHHHHHHHHT-------TCCTTCCEEESSCTTSHHHHHHHHHH
T ss_pred EEEEEEECCEEEEEEEccCCcccccccccCCCCCcCHHHHHHHHHHh-------CCCCCCEEEeCCCCcCHHHHHHHHhh
Confidence 456666677777765543222222222 22345666665442 33467899999999999999999875
Q ss_pred ---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc----
Q 027594 87 ---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---- 158 (221)
Q Consensus 87 ---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~---- 158 (221)
.+|+++|+ +.+++.+++|++.+++ +++++...|..+. +.....||+|++++++....
T Consensus 226 ~~~~~v~g~Di~~~~i~~a~~n~~~~g~------------~~i~~~~~D~~~~---~~~~~~~D~Ii~npPyg~r~~~~~ 290 (354)
T 3tma_A 226 GPTSPVYAGDLDEKRLGLAREAALASGL------------SWIRFLRADARHL---PRFFPEVDRILANPPHGLRLGRKE 290 (354)
T ss_dssp CTTSCEEEEESCHHHHHHHHHHHHHTTC------------TTCEEEECCGGGG---GGTCCCCSEEEECCCSCC----CH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHcCC------------CceEEEeCChhhC---ccccCCCCEEEECCCCcCccCCcc
Confidence 78999998 6699999999999875 3688888665443 23345689999988854311
Q ss_pred ----CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 159 ----LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 159 ----~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+++.+.++|+|||.+++...
T Consensus 291 ~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 291 GLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred cHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 136788899999999999988654
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-15 Score=119.56 Aligned_cols=101 Identities=18% Similarity=0.080 Sum_probs=83.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..++.+++.|.+|+++|+ +.+++.+++|+..+++ .+++.+...|+.+.. ..
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~----~~ 142 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGI-----------ADKIEFICGDFLLLA----SF 142 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHG----GG
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC-----------CcCeEEEECChHHhc----cc
Confidence 6789999999999999999999999999998 5699999999998875 246888886665432 35
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.+||+|++++++++.......+..+.++|+|||.+++
T Consensus 143 ~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 143 LKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp CCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHH
T ss_pred CCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHH
Confidence 6899999999888776666566677888999988554
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-13 Score=112.86 Aligned_cols=106 Identities=12% Similarity=0.060 Sum_probs=87.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||+|||+|..+..+++. +.+++++|.+.+++.+++++...++ .+++++...|..+ ..
T Consensus 202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l-----------~~~v~~~~~d~~~--~~--- 265 (369)
T 3gwz_A 202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGL-----------ADRCEILPGDFFE--TI--- 265 (369)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTT--CC---
T ss_pred cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCc-----------CCceEEeccCCCC--CC---
Confidence 5679999999999999999887 4589999997799999999988765 4679998876652 11
Q ss_pred CCCccEEEEcccccCCcCHH--HHHHHHHHhcCCCeEEEEEEEecC
Q 027594 142 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~--~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
..+||+|+++.++++.++.. .+++.+.++|+|||++++......
T Consensus 266 p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 311 (369)
T 3gwz_A 266 PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLID 311 (369)
T ss_dssp CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCC
T ss_pred CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 22799999999998876554 799999999999999999776543
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=111.04 Aligned_cols=103 Identities=19% Similarity=0.257 Sum_probs=81.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||+|||+|..++.+++.|.+|+++|. +++++.+++++..++. ++.+...|+.+.. .
T Consensus 40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~~----~ 102 (252)
T 1wzn_A 40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-------------KIEFLQGDVLEIA----F 102 (252)
T ss_dssp SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEESCGGGCC----C
T ss_pred cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEECChhhcc----c
Confidence 35679999999999999999999999999998 5699999999887653 5777776665432 2
Q ss_pred CCCccEEEEcc-c--ccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 142 APPFDYIIGTD-V--VYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 142 ~~~fD~Vi~~d-~--~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
..+||+|++.. . ++..+....+++.+.++|+|||.+++..+
T Consensus 103 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 36899999752 2 22235678899999999999999987554
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.7e-14 Score=116.00 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=85.3
Q ss_pred CCCCeEEEeCCCccHHHHHHH-H--hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMA-L--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a-~--~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+|||||||+|..++.++ . .+.+|+++|. +.+++.+++|+..++. .+++++...|+.+.
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--- 182 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL-----------AGQITLHRQDAWKL--- 182 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEECCGGGC---
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECchhcC---
Confidence 467899999999999999985 2 2568999998 6699999999988765 34688888776553
Q ss_pred cccCCCccEEEEcccccCCcCHHH---HHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEP---LLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~---l~~~~~~ll~~~g~~~i~~~ 182 (221)
+.. ++||+|+++.++++..+... +++.+.++|+|||.+++...
T Consensus 183 ~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 228 (305)
T 3ocj_A 183 DTR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL 228 (305)
T ss_dssp CCC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred Ccc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 223 78999999999888665554 79999999999999998763
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=108.13 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=92.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
++++|||||||+|..++.+++. +++|+++|. +++++.+++|+..++. .+++++...|..+... .
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~ 126 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-----------NDRVEVRTGLALDSLQQI 126 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence 5789999999999999999987 789999998 6699999999998875 3568888865533211 1
Q ss_pred ccc-CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHhc--CCeEE
Q 027594 139 KAV-APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNVK 203 (221)
Q Consensus 139 ~~~-~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------------~~~~~~~~~~~~--~f~v~ 203 (221)
... ..+||+|++... ......++..+.++|+|||.+++....... ...+.|.+.+.. .|...
T Consensus 127 ~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 203 (223)
T 3duw_A 127 ENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSAT 203 (223)
T ss_dssp HHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred HhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEE
Confidence 111 257999998644 456778999999999999987764433221 123566666643 46655
Q ss_pred Eec
Q 027594 204 LVP 206 (221)
Q Consensus 204 ~v~ 206 (221)
.++
T Consensus 204 ~~p 206 (223)
T 3duw_A 204 ALQ 206 (223)
T ss_dssp EEE
T ss_pred EEe
Confidence 544
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=116.65 Aligned_cols=103 Identities=14% Similarity=0.110 Sum_probs=81.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+.+|||||||+|.+++.+++.+ .+|+++|. +.+++.+++|+..++. .+.+...| ....
T Consensus 196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------------~~~~~~~d---~~~~-- 257 (343)
T 2pjd_A 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-------------EGEVFASN---VFSE-- 257 (343)
T ss_dssp CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-------------CCEEEECS---TTTT--
T ss_pred CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------------CCEEEEcc---cccc--
Confidence 45699999999999999999887 47999998 5599999999998874 23444433 2222
Q ss_pred cCCCccEEEEcccccC-----CcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~-----~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
..++||+|++++++++ ......+++.+.++|+|||.+++.....
T Consensus 258 ~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 258 VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 2568999999998764 3456789999999999999999876543
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.2e-14 Score=113.26 Aligned_cols=112 Identities=18% Similarity=0.090 Sum_probs=87.3
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCC
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL 121 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~ 121 (221)
..+++.+.+.. ...++.+|||||||+|..+..++..+++|+++|. +.+++.++++.
T Consensus 20 ~~~~~~l~~~~-------~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~---------------- 76 (261)
T 3ege_A 20 IRIVNAIINLL-------NLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP---------------- 76 (261)
T ss_dssp HHHHHHHHHHH-------CCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT----------------
T ss_pred HHHHHHHHHHh-------CCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc----------------
Confidence 34566666553 2346789999999999999999999999999998 45777655432
Q ss_pred CCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 122 ~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++.+...|+.+ .+...++||+|+++.++++..+...+++.+.++|+ ||.+++....
T Consensus 77 --~~~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~ 132 (261)
T 3ege_A 77 --QVEWFTGYAEN---LALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD 132 (261)
T ss_dssp --TEEEECCCTTS---CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred --CCEEEECchhh---CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence 46776655533 33446799999999999999999999999999999 9987776654
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-13 Score=117.42 Aligned_cols=112 Identities=20% Similarity=0.146 Sum_probs=87.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhh-ccccCCCCCCCCCceEEEEEEecCCCC-cc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTS-RISQMNPGSDLLGSIQAVELDWGNEDH-IK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~-~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~ 139 (221)
++++|||+|||+|..++.+|+.|+ +|+++|. +++++.+++|++.|++ . +++++...|..+... ..
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~-----------~~v~~~~~D~~~~~~~~~ 288 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-----------SKAEFVRDDVFKLLRTYR 288 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG-----------GGEEEEESCHHHHHHHHH
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-----------cceEEEECCHHHHHHHHH
Confidence 678999999999999999999875 7999998 5699999999999874 1 267887765543211 11
Q ss_pred ccCCCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 140 AVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
....+||+|+++++.+.. .....++..+.++|+|||.++++......
T Consensus 289 ~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 344 (396)
T 3c0k_A 289 DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLM 344 (396)
T ss_dssp HTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTC
T ss_pred hcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcC
Confidence 114689999998886543 45778889999999999999987765443
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=108.07 Aligned_cols=121 Identities=15% Similarity=0.084 Sum_probs=88.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|.+++.+++.|. +|+++|+ +.+++.|++|++.|++ .+++++...|+.+.. .
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl-----------~~~I~~~~gD~l~~~---~ 86 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL-----------TSKIDVRLANGLSAF---E 86 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGC---C
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhcc---c
Confidence 678999999999999999999874 5999998 5699999999999987 467999886654332 1
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK 203 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~ 203 (221)
...+||+|+.+.+.- ..+..++......|+++|.+++.- .......+.|+. +.+|.+.
T Consensus 87 ~~~~~D~IviaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp-~~~~~~lr~~L~--~~Gf~i~ 144 (230)
T 3lec_A 87 EADNIDTITICGMGG--RLIADILNNDIDKLQHVKTLVLQP-NNREDDLRKWLA--ANDFEIV 144 (230)
T ss_dssp GGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEE-SSCHHHHHHHHH--HTTEEEE
T ss_pred cccccCEEEEeCCch--HHHHHHHHHHHHHhCcCCEEEEEC-CCChHHHHHHHH--HCCCEEE
Confidence 223799987654433 457778888888899999876644 444333344433 3577763
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-13 Score=108.64 Aligned_cols=121 Identities=13% Similarity=0.082 Sum_probs=88.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|.+++.+|+.+. +|+++|+ +.+++.+++|++.|++ .+++++...|+.....
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----------~~~i~~~~~d~l~~l~--- 80 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL-----------KEKIQVRLANGLAAFE--- 80 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGCC---
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEECchhhhcc---
Confidence 567999999999999999999874 6999998 5699999999999987 4578888866643221
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK 203 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~ 203 (221)
...+||+|+.+.. ....+..++......|+++|.+++ .+.......+.++. +.+|.+.
T Consensus 81 ~~~~~D~IviaG~--Gg~~i~~Il~~~~~~L~~~~~lVl-q~~~~~~~vr~~L~--~~Gf~i~ 138 (225)
T 3kr9_A 81 ETDQVSVITIAGM--GGRLIARILEEGLGKLANVERLIL-QPNNREDDLRIWLQ--DHGFQIV 138 (225)
T ss_dssp GGGCCCEEEEEEE--CHHHHHHHHHHTGGGCTTCCEEEE-EESSCHHHHHHHHH--HTTEEEE
T ss_pred cCcCCCEEEEcCC--ChHHHHHHHHHHHHHhCCCCEEEE-ECCCCHHHHHHHHH--HCCCEEE
Confidence 1226998887654 223467888888889999999777 44444333333332 3577763
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-14 Score=114.38 Aligned_cols=103 Identities=16% Similarity=0.119 Sum_probs=84.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.+|||+|||+|..++.+|+.+. +|+++|. +++++.+++|++.|++ .++.+...|..+. .
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l------------~~~~~~~~d~~~~-~- 182 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL------------NNVIPILADNRDV-E- 182 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC------------SSEEEEESCGGGC-C-
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCEEEEECChHHc-C-
Confidence 34678999999999999999998854 8999998 6799999999999985 4677777665443 1
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
. ..+||+|+++++. ....++..+.++|+|||.+++.....
T Consensus 183 -~-~~~~D~Vi~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 183 -L-KDVADRVIMGYVH----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp -C-TTCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred -c-cCCceEEEECCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 1 5689999998774 56678888899999999999876655
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.49 E-value=3.1e-13 Score=106.77 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=72.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||||||+|..+..+++.. .+|+++|. +.+++.+.++++.. .++.+...|........
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--------------~~v~~~~~d~~~~~~~~ 121 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--------------NNIIPLLFDASKPWKYS 121 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--------------SSEEEECSCTTCGGGTT
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--------------CCeEEEEcCCCCchhhc
Confidence 467899999999999999998764 68999998 55877766655432 24555543332211101
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...++||+|+++ + ........+++.+.++|+|||.++++.+.
T Consensus 122 ~~~~~fD~V~~~-~-~~~~~~~~~l~~~~r~LkpgG~l~i~~~~ 163 (210)
T 1nt2_A 122 GIVEKVDLIYQD-I-AQKNQIEILKANAEFFLKEKGEVVIMVKA 163 (210)
T ss_dssp TTCCCEEEEEEC-C-CSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccccceeEEEEe-c-cChhHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 123689999987 2 23333455689999999999999998654
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.9e-13 Score=116.52 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=81.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
+|++|||+|||||..++.+|+.|++|+++|. +.+++.+++|++.|++ .. .+...|..+. .....
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~-----------~~--~~~~~D~~~~--l~~~~ 278 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGL-----------RV--DIRHGEALPT--LRGLE 278 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----------CC--EEEESCHHHH--HHTCC
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCC-----------CC--cEEEccHHHH--HHHhc
Confidence 4889999999999999999999999999998 5699999999999986 12 3334332221 11113
Q ss_pred CCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 143 PPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
..||+|+++++.+.. .....++..+.++|+|||.++++.....
T Consensus 279 ~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 279 GPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 349999998886553 2456788888999999999987665544
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.6e-13 Score=109.08 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=78.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+|.+|||+|||+|.+++.+|+.|+ +|+++|. +.+++.+++|++.|++ .+++++.+.|..+.. .
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v-----------~~~v~~~~~D~~~~~----~ 189 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFP----G 189 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCC----C
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCcHHHhc----c
Confidence 688999999999999999999985 7999998 6799999999999997 567888875543321 2
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
...||.|+++++.+.. .++..+.++|++||.+.+
T Consensus 190 ~~~~D~Vi~~~p~~~~----~~l~~a~~~lk~gG~ih~ 223 (278)
T 3k6r_A 190 ENIADRILMGYVVRTH----EFIPKALSIAKDGAIIHY 223 (278)
T ss_dssp CSCEEEEEECCCSSGG----GGHHHHHHHEEEEEEEEE
T ss_pred ccCCCEEEECCCCcHH----HHHHHHHHHcCCCCEEEE
Confidence 5689999998775543 456667788999998765
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-13 Score=110.67 Aligned_cols=102 Identities=16% Similarity=0.196 Sum_probs=81.3
Q ss_pred CCCCCCeEEEeCCCcc-HHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGCG-VAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G-~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...++.+|||||||+| +.++.+|+ .|++|+++|. +++++.|+++++..+. +++++...|.. .
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl------------~~v~~v~gDa~---~ 183 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV------------DGVNVITGDET---V 183 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC------------CSEEEEESCGG---G
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC------------CCeEEEECchh---h
Confidence 3457899999999997 45566776 5899999998 6699999999998764 57888875443 2
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
. +.++||+|+.+.. ......+++.+.++|+|||++++...
T Consensus 184 l--~d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 184 I--DGLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp G--GGCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred C--CCCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 2 2578999998654 46788999999999999999988653
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=9.2e-14 Score=114.74 Aligned_cols=120 Identities=15% Similarity=0.175 Sum_probs=89.7
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
.+..+.+++.+.. ...++.+|||+|||+|.+++.+++. +++|+++|+ +++++.+++|+..+++
T Consensus 107 ~te~lv~~~l~~~-------~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l-------- 171 (284)
T 1nv8_A 107 ETEELVELALELI-------RKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-------- 171 (284)
T ss_dssp THHHHHHHHHHHH-------HHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC--------
T ss_pred hHHHHHHHHHHHh-------cccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC--------
Confidence 3556666665442 1125579999999999999999988 778999998 5699999999999876
Q ss_pred CCCCCceEEEEEEecCCCCccccCCCc---cEEEEcccccCCcC-------------------HHHHHHHHH-HhcCCCe
Q 027594 119 SDLLGSIQAVELDWGNEDHIKAVAPPF---DYIIGTDVVYAEHL-------------------LEPLLQTIF-ALSGPKT 175 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~~~~~~~f---D~Vi~~d~~y~~~~-------------------~~~l~~~~~-~ll~~~g 175 (221)
.+++++...||.... ..+| |+|++++++..... -..+++.+. +.++|||
T Consensus 172 ---~~~v~~~~~D~~~~~-----~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG 243 (284)
T 1nv8_A 172 ---SDRFFVRKGEFLEPF-----KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGK 243 (284)
T ss_dssp ---TTSEEEEESSTTGGG-----GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTC
T ss_pred ---CCceEEEECcchhhc-----ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCC
Confidence 346899887775421 2468 99999977543211 116788888 9999999
Q ss_pred EEEEEEEe
Q 027594 176 TILLGYEI 183 (221)
Q Consensus 176 ~~~i~~~~ 183 (221)
.+++....
T Consensus 244 ~l~~e~~~ 251 (284)
T 1nv8_A 244 IVLMEIGE 251 (284)
T ss_dssp EEEEECCT
T ss_pred EEEEEECc
Confidence 99885543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.7e-13 Score=106.37 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=81.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||+|||+|..+..+ +. +|+++|. +.+++.++++. . ++.+...|.. ..+..
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~--~---------------~~~~~~~d~~---~~~~~ 92 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA--P---------------EATWVRAWGE---ALPFP 92 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC--T---------------TSEEECCCTT---SCCSC
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC--C---------------CcEEEEcccc---cCCCC
Confidence 7789999999999988877 77 8999998 56999888765 1 2455554433 23334
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
.++||+|+++.++++..+...+++.+.++|+|||.+++....+..
T Consensus 93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 137 (211)
T 2gs9_A 93 GESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS 137 (211)
T ss_dssp SSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred CCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence 578999999999999889999999999999999999998876653
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=112.79 Aligned_cols=121 Identities=13% Similarity=0.079 Sum_probs=91.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHh-hhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.+ +. +++.+...|+.+.
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~------------~~v~~~~~d~~~~- 174 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI------------GNVRTSRSDIADF- 174 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC------------TTEEEECSCTTTC-
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC------------CcEEEEECchhcc-
Confidence 346789999999999999999987 679999998 66999999999887 53 4677777665431
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEe
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v 205 (221)
...++||+|+++ ......+++.+.++|+|||.+++...... ..+.+.+.++ .+|...++
T Consensus 175 ---~~~~~fD~Vi~~-----~~~~~~~l~~~~~~LkpgG~l~i~~~~~~--~~~~~~~~l~~~Gf~~~~~ 234 (275)
T 1yb2_A 175 ---ISDQMYDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPNFD--QSEKTVLSLSASGMHHLET 234 (275)
T ss_dssp ---CCSCCEEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESSHH--HHHHHHHHSGGGTEEEEEE
T ss_pred ---CcCCCccEEEEc-----CcCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCeEEEE
Confidence 234689999983 33556889999999999999998775432 2345555554 47766444
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-13 Score=109.73 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=83.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||||||+|..+..++..+.+|+++|. +.+++.++++. .++.+...|... .+.
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~---~~~- 114 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY-----------------PHLHFDVADARN---FRV- 114 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------------TTSCEEECCTTT---CCC-
T ss_pred CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-----------------CCCEEEECChhh---CCc-
Confidence 36789999999999999999998899999998 56999888754 135666655433 222
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
.++||+|+++.++++..+...+++.+.++|+|||.+++.....
T Consensus 115 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 115 DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 4689999999999998899999999999999999999877654
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-14 Score=111.75 Aligned_cols=101 Identities=7% Similarity=0.029 Sum_probs=79.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+..+|||||||+|.+++.++.. +++|+++|++ .|++.+++|++.++. ..++.+ .|. .. ..
T Consensus 49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~-----------~~~v~~--~d~---~~-~~ 111 (200)
T 3fzg_A 49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT-----------TIKYRF--LNK---ES-DV 111 (200)
T ss_dssp CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC-----------SSEEEE--ECC---HH-HH
T ss_pred CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CccEEE--ecc---cc-cC
Confidence 4569999999999999999877 6789999984 599999999999875 234555 222 11 23
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+..+||+|++..+++..+..+..+..+.+.|+|+|.++ +.+
T Consensus 112 ~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfI-Sfp 152 (200)
T 3fzg_A 112 YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVI-SFP 152 (200)
T ss_dssp TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEE-EEE
T ss_pred CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEE-EeC
Confidence 46789999999999987666666778999999998864 455
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-13 Score=114.32 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=95.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-ccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~ 140 (221)
++++|||+|||+|..++.+|+.|+ +|+++|+ +.+++.+++|++.|++ .+++++...|..+... ...
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~-----------~~~v~~~~~d~~~~~~~~~~ 285 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----------EDRMKFIVGSAFEEMEKLQK 285 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHHHH
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CccceEEECCHHHHHHHHHh
Confidence 678999999999999999999876 7999998 5699999999999986 2368888765543211 111
Q ss_pred cCCCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEecChhH--HHHHH-HHH-hcCCeEEEec
Q 027594 141 VAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSV--HEQML-QMW-KSNFNVKLVP 206 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~--~~~~~-~~~-~~~f~v~~v~ 206 (221)
...+||+|+++++.+.. .....++..+.++|+|||.++++........ ....+ +.+ +.+..++.+.
T Consensus 286 ~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~ 364 (396)
T 2as0_A 286 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLE 364 (396)
T ss_dssp TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESS
T ss_pred hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 24689999998886653 3466788888999999999888766544321 22222 223 2355666555
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.2e-13 Score=110.62 Aligned_cols=96 Identities=14% Similarity=0.082 Sum_probs=78.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||||||+|..+..+++.+.+|+++|+ +++++.++++.. ++.+...|.... +. .
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-----------------~~~~~~~d~~~~---~~-~ 108 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP-----------------DAVLHHGDMRDF---SL-G 108 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCTTTC---CC-S
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----------------CCEEEECChHHC---Cc-c
Confidence 5679999999999999999999999999998 569998887632 357777555432 22 5
Q ss_pred CCccEEEEcc-cccCC---cCHHHHHHHHHHhcCCCeEEEEE
Q 027594 143 PPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 143 ~~fD~Vi~~d-~~y~~---~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
++||+|+++. ++++. +....+++.+.++|+|||.+++.
T Consensus 109 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~ 150 (263)
T 3pfg_A 109 RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150 (263)
T ss_dssp CCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 7899999997 88775 46778899999999999999984
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=106.87 Aligned_cols=116 Identities=17% Similarity=0.224 Sum_probs=87.8
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
..+.+++.+. ..++.+|||+|||+|..++.+++.|. +|+++|. +.+++.++++...
T Consensus 30 ~~~~~~l~~~---------~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~------------- 87 (215)
T 2pxx_A 30 SSFRALLEPE---------LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH------------- 87 (215)
T ss_dssp HHHHHHHGGG---------CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-------------
T ss_pred HHHHHHHHHh---------cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-------------
Confidence 3466666644 24678999999999999999999887 7999998 5699999887653
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccC---------------CcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA---------------EHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~---------------~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
..++.+...|.... +...++||+|+++.++.+ ......+++.+.++|+|||.+++.....
T Consensus 88 -~~~i~~~~~d~~~~---~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~ 162 (215)
T 2pxx_A 88 -VPQLRWETMDVRKL---DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 (215)
T ss_dssp -CTTCEEEECCTTSC---CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred -CCCcEEEEcchhcC---CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence 13577777555432 334578999999887643 2356789999999999999998876543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=110.55 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=78.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHh---hhcccc---------CCCCC-----CC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWN---TSRISQ---------MNPGS-----DL 121 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~----ga~v~~~D~-~~~l~~~~~n~~~n---~~~~~~---------~~~~~-----~~ 121 (221)
++.+|||+|||+|..++.+++. +.+|+++|+ +.+++.+++|+..+ ++.... ....+ ..
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 5679999999999999999876 568999998 56999999998876 431000 00000 00
Q ss_pred CCceE-------------EEEEEecCCCCcc--ccCCCccEEEEcccccCCc---------CHHHHHHHHHHhcCCCeEE
Q 027594 122 LGSIQ-------------AVELDWGNEDHIK--AVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 122 ~~~v~-------------~~~~dw~~~~~~~--~~~~~fD~Vi~~d~~y~~~---------~~~~l~~~~~~ll~~~g~~ 177 (221)
..++. +...|+.+..... ....+||+|++++++.... ....+++.+.++|+|||.+
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 00034 6665543321000 0234899999998765433 2458899999999999999
Q ss_pred EEEE
Q 027594 178 LLGY 181 (221)
Q Consensus 178 ~i~~ 181 (221)
+++.
T Consensus 211 ~~~~ 214 (250)
T 1o9g_A 211 AVTD 214 (250)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9843
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.47 E-value=5e-13 Score=107.55 Aligned_cols=120 Identities=12% Similarity=0.013 Sum_probs=87.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|.+++.+++.+. +|+++|+ +.+++.|++|++.|++ .+++.+...|+.+.. .
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----------~~~I~v~~gD~l~~~---~ 86 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL-----------TEQIDVRKGNGLAVI---E 86 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGC---C
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEecchhhcc---C
Confidence 567999999999999999999874 6999998 5699999999999987 467888886654332 1
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 202 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v 202 (221)
...+||+|+.+..-- ..+..++......|++++.+++. +.......+.++. +.+|.+
T Consensus 87 ~~~~~D~IviagmGg--~lI~~IL~~~~~~L~~~~~lIlq-~~~~~~~lr~~L~--~~Gf~i 143 (244)
T 3gnl_A 87 KKDAIDTIVIAGMGG--TLIRTILEEGAAKLAGVTKLILQ-PNIAAWQLREWSE--QNNWLI 143 (244)
T ss_dssp GGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEE-ESSCHHHHHHHHH--HHTEEE
T ss_pred ccccccEEEEeCCch--HHHHHHHHHHHHHhCCCCEEEEE-cCCChHHHHHHHH--HCCCEE
Confidence 123699987654322 45677788888889998887764 4444433444433 346766
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-13 Score=107.37 Aligned_cols=130 Identities=18% Similarity=0.091 Sum_probs=93.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++|||||||+|..++.+++. +.+|+++|. +++++.++++++.++. .+++++...|..+.....
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~ 132 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-----------SDKIGLRLSPAKDTLAEL 132 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeCCHHHHHHHh
Confidence 5679999999999999999986 678999998 6699999999998875 356888876553321110
Q ss_pred cc---CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHhc--CCeE
Q 027594 140 AV---APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNV 202 (221)
Q Consensus 140 ~~---~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------------~~~~~~~~~~~~--~f~v 202 (221)
.. ..+||+|+.... ......+++.+.++|+|||.+++....... ...+.|.+.+.. .|..
T Consensus 133 ~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 209 (225)
T 3tr6_A 133 IHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDM 209 (225)
T ss_dssp HTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEE
T ss_pred hhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEE
Confidence 00 168999996543 456788999999999999999875433211 124566655543 4665
Q ss_pred EEecC
Q 027594 203 KLVPK 207 (221)
Q Consensus 203 ~~v~~ 207 (221)
..++.
T Consensus 210 ~~lp~ 214 (225)
T 3tr6_A 210 ILIPI 214 (225)
T ss_dssp EEECS
T ss_pred EEEEc
Confidence 55543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=112.91 Aligned_cols=148 Identities=16% Similarity=0.102 Sum_probs=91.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhh------------hccccCCCCC------CCC
Q 027594 63 LKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNT------------SRISQMNPGS------DLL 122 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~------------~~~~~~~~~~------~~~ 122 (221)
.++.+|||||||+|..++.++. .+.+|+++|+ +.|++.+++++.... .........- ...
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4678999999999996655554 4779999998 569999988664311 0000000000 000
Q ss_pred CceEEEEEEecCCCCc---cccCCCccEEEEcccccC----CcCHHHHHHHHHHhcCCCeEEEEEEEecC----------
Q 027594 123 GSIQAVELDWGNEDHI---KAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGPKTTILLGYEIRS---------- 185 (221)
Q Consensus 123 ~~v~~~~~dw~~~~~~---~~~~~~fD~Vi~~d~~y~----~~~~~~l~~~~~~ll~~~g~~~i~~~~r~---------- 185 (221)
..+.+...|....... ....++||+|+++.++++ ..+...+++.+.++|+|||.+++......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~ 229 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL 229 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence 0133444444331111 122456999999999887 55788999999999999999998642211
Q ss_pred ---hhHHHHHHHHHh-cCCeEEEecCCCC
Q 027594 186 ---TSVHEQMLQMWK-SNFNVKLVPKAKE 210 (221)
Q Consensus 186 ---~~~~~~~~~~~~-~~f~v~~v~~~~~ 210 (221)
.-..+.+.+.++ .+|++..+.....
T Consensus 230 ~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 258 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSGYKVRDLRTYIM 258 (289)
T ss_dssp ECCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred eeccCCHHHHHHHHHHcCCeEEEeeEeec
Confidence 012355556664 5898866654443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=108.75 Aligned_cols=114 Identities=13% Similarity=0.083 Sum_probs=86.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.++. .+++++...|+.+.
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~-- 157 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----------DDRVTIKLKDIYEG-- 157 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-----------TTTEEEECSCGGGC--
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-----------CCceEEEECchhhc--
Confidence 457889999999999999999987 678999998 5699999999998875 34588888666533
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK 197 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~ 197 (221)
....+||+|+++. .....+++.+.++|+|||.+++..+... ....+.+.++
T Consensus 158 --~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~ 208 (255)
T 3mb5_A 158 --IEEENVDHVILDL-----PQPERVVEHAAKALKPGGFFVAYTPCSN--QVMRLHEKLR 208 (255)
T ss_dssp --CCCCSEEEEEECS-----SCGGGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHH
T ss_pred --cCCCCcCEEEECC-----CCHHHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHH
Confidence 2356799999853 3456789999999999999988654322 2334444443
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=108.15 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=81.5
Q ss_pred CCCeEEEeCCCccHHHHHHHH--hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-
Q 027594 64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~--~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~- 139 (221)
++++|||||||+|..++.+++ .+.+|+++|. +++++.+++|++.+++ .+++.+...|..+. .+
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~~~ 137 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF-----------ENQVRIIEGNALEQ--FEN 137 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-----------TTTEEEEESCGGGC--HHH
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECCHHHH--HHh
Confidence 578999999999999999998 4678999998 6699999999998875 35788888665433 22
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
....+||+|++.. .......+++.+.++|+|||.+++
T Consensus 138 ~~~~~fD~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 138 VNDKVYDMIFIDA---AKAQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp HTTSCEEEEEEET---TSSSHHHHHHHHGGGEEEEEEEEE
T ss_pred hccCCccEEEEcC---cHHHHHHHHHHHHHhcCCCeEEEE
Confidence 2257899999763 356688899999999999999877
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=109.21 Aligned_cols=116 Identities=17% Similarity=0.198 Sum_probs=84.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||+|||+|..+..+++.+++|+++|. +.+++.++++ . .++++...|+.+. .+..
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~-------------~~~~~~~~d~~~~--~~~~ 107 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN----A-------------PHADVYEWNGKGE--LPAG 107 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH----C-------------TTSEEEECCSCSS--CCTT
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh----C-------------CCceEEEcchhhc--cCCc
Confidence 36789999999999999999999999999998 5699999887 1 3578888776432 2333
Q ss_pred -CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEec
Q 027594 142 -APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 142 -~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~ 206 (221)
.++||+|+++ .....+++.+.++|+|||.++........ ..+.+.+. .+|.+..+.
T Consensus 108 ~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 108 LGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVGPRLNV---PEVPERLAAVGWDIVAED 165 (226)
T ss_dssp CCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEESSSCC---THHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeCCcCCH---HHHHHHHHHCCCeEEEEE
Confidence 5789999997 35667888999999999998832222222 33444443 477765544
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.6e-14 Score=112.53 Aligned_cols=104 Identities=19% Similarity=0.189 Sum_probs=78.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||||||+|..+..+++.+. +|+++|. +.+++.++++...++ .++.+...|+.+.. .+..
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-------------~~v~~~~~d~~~~~-~~~~ 125 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVA-PTLP 125 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHG-GGSC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEecCHHHhh-cccC
Confidence 567999999999999999988766 7999998 569999999876543 35777776664431 0234
Q ss_pred CCCccEEEE-cccc----cCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 142 APPFDYIIG-TDVV----YAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 142 ~~~fD~Vi~-~d~~----y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
+++||+|++ ...+ .+....+.+++.+.++|+|||++++..
T Consensus 126 ~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~ 170 (236)
T 1zx0_A 126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred CCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence 578999998 3322 123334577999999999999988754
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=107.25 Aligned_cols=100 Identities=18% Similarity=0.164 Sum_probs=80.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..+..+++. .+|+++|. +.+++.+++++..++ .++.+...|..... . .
T Consensus 33 ~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~~---~-~ 94 (243)
T 3d2l_A 33 PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN-------------RHVDFWVQDMRELE---L-P 94 (243)
T ss_dssp TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT-------------CCCEEEECCGGGCC---C-S
T ss_pred CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC-------------CceEEEEcChhhcC---C-C
Confidence 4579999999999999999988 89999998 569999999987764 35677776654432 2 3
Q ss_pred CCccEEEEcc-cccCC---cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 143 PPFDYIIGTD-VVYAE---HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 143 ~~fD~Vi~~d-~~y~~---~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
++||+|+++. ++++. .....+++.+.++|+|||.+++..
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 6899999874 77765 567788999999999999998743
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=121.93 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=83.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++++|||||||+|.+++.+++.++ +|+++|.+++++.+++|++.|++ .+++++...|+.+..
T Consensus 156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl-----------~~~v~~~~~d~~~~~---- 220 (480)
T 3b3j_A 156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNL-----------TDRIVVIPGKVEEVS---- 220 (480)
T ss_dssp GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC----
T ss_pred hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhCc----
Confidence 34678999999999999999998875 89999996699999999999876 467999987765432
Q ss_pred cCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
...+||+|+++.++|+. +.....+..+.++|+|||.+++.
T Consensus 221 ~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 221 LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 13589999998887753 33455666778899999998853
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=6.7e-13 Score=113.13 Aligned_cols=103 Identities=14% Similarity=0.049 Sum_probs=84.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||+|||+|..++.+++. +.+++++|++.+++.+++++..+++ .+++++...|+.+. .
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~--- 245 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL-----------ADRVTVAEGDFFKP--L--- 245 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--C---
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCC-----------CCceEEEeCCCCCc--C---
Confidence 5679999999999999999987 4589999996699999999988765 35788888665431 2
Q ss_pred CCCccEEEEcccccCCcCH--HHHHHHHHHhcCCCeEEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~--~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
...||+|+++.++++.... ..+++.+.++|+|||++++...
T Consensus 246 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 246 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 2349999999999876554 4899999999999999988765
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-13 Score=110.67 Aligned_cols=107 Identities=15% Similarity=0.158 Sum_probs=87.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||+|||+|..+..+++. +.+++++|.+.+++.+++++..+++ .+++++...|+.+. +.
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---~~ 229 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGV-----------ASRYHTIAGSAFEV---DY 229 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTC-----------GGGEEEEESCTTTS---CC
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC-----------CcceEEEecccccC---CC
Confidence 35679999999999999999877 6789999988999999999988765 34688888665432 11
Q ss_pred cCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
...||+|+++.++++. +....+++.+.++|+|||++++.....
T Consensus 230 -~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 230 -GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp -CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred -CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 3359999999999886 456799999999999999998876543
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.4e-13 Score=112.35 Aligned_cols=108 Identities=16% Similarity=0.276 Sum_probs=77.9
Q ss_pred CCCCeEEEeCCCccHHHHHHH----Hh--CCEE--EEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEec
Q 027594 63 LKGKRVIELGAGCGVAGFGMA----LL--GCNV--ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a----~~--ga~v--~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~ 133 (221)
.++.+|||||||+|.++..++ .. +.+| +++|. ++|++.++++++.... ..++.+ .|.
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~-----------~~~v~~---~~~ 116 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN-----------LENVKF---AWH 116 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS-----------CTTEEE---EEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC-----------CCcceE---EEE
Confidence 356799999999997765332 22 3444 99998 5699999988765311 133433 233
Q ss_pred CCCC--cc------ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 134 NEDH--IK------AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 134 ~~~~--~~------~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
.... .. ..+++||+|+++.++++.++...+++.+.++|+|||.++++....
T Consensus 117 ~~~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 117 KETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp CSCHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred ecchhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 3221 11 235789999999999999999999999999999999999876543
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-12 Score=112.32 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=85.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-cccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~~ 141 (221)
++++|||+|||+|..++.+|+.+.+|+++|. +.+++.+++|++.|++ .++.+...|..+... ....
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~------------~~~~~~~~d~~~~~~~~~~~ 276 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL------------GNVRVLEANAFDLLRRLEKE 276 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEESCHHHHHHHHHHT
T ss_pred CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CCceEEECCHHHHHHHHHhc
Confidence 6789999999999999999988667999998 6699999999999986 347777755433211 0111
Q ss_pred CCCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 142 APPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
..+||+|+++++.+.. .....++..+.++|+|||.++++......
T Consensus 277 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 330 (382)
T 1wxx_A 277 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHM 330 (382)
T ss_dssp TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred CCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence 4689999998876653 34567888899999999999887765443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=112.10 Aligned_cols=114 Identities=10% Similarity=0.031 Sum_probs=76.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC---Cc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~---~~ 138 (221)
++.+|||||||+|.....+++. +++|+++|+ ++|++.|++.....+.... ...-++.+...+..... .+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~------~~~~~~~f~~~d~~~d~~~~~l 121 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIK------TKYYKFDYIQETIRSDTFVSSV 121 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----------CCCEEEEEECCTTSSSHHHHH
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcccccc------ccccccchhhhhcccchhhhhh
Confidence 4789999999999655545444 578999998 5599999987765432000 00001344443331111 01
Q ss_pred --cccCCCccEEEEcccccC---CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 139 --KAVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 139 --~~~~~~fD~Vi~~d~~y~---~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
....++||+|++..++++ ..+...+++.+.++|+|||.+++....
T Consensus 122 ~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 122 REVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp HTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 123568999999888753 346789999999999999999887764
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-14 Score=113.13 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=79.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+|.+|||||||+|..+..+++.+ ++||++|. +++++.++++....+ .++.+...+|..... ...
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~-------------~~~~~~~~~a~~~~~-~~~ 125 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVAP-TLP 125 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHGG-GSC
T ss_pred CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC-------------CceEEEeehHHhhcc-ccc
Confidence 67899999999999999998764 57999998 669999999877654 357777766654321 234
Q ss_pred CCCccEEEEcc-----cccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 142 APPFDYIIGTD-----VVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 142 ~~~fD~Vi~~d-----~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..+||.|+... ...+..+.+.+++.+.++|||||++.+..
T Consensus 126 ~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 67899997532 23345567889999999999999987643
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-13 Score=107.07 Aligned_cols=128 Identities=11% Similarity=0.080 Sum_probs=90.9
Q ss_pred CCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCC-CceEEEEEEecCCCCcc
Q 027594 65 GKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL-GSIQAVELDWGNEDHIK 139 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~-~~v~~~~~dw~~~~~~~ 139 (221)
+.+|||||||+|..++.+|+. +++|+++|. +++++.+++|++.++. . +++++...|..+... .
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~~i~~~~gda~~~l~-~ 124 (221)
T 3dr5_A 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-----------SPSRVRFLLSRPLDVMS-R 124 (221)
T ss_dssp CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-----------CGGGEEEECSCHHHHGG-G
T ss_pred CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CcCcEEEEEcCHHHHHH-H
Confidence 449999999999999999874 678999998 6699999999999875 3 478887754433211 1
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec---------C-hh--HHHHHHHHHhc--CCeEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR---------S-TS--VHEQMLQMWKS--NFNVKLV 205 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r---------~-~~--~~~~~~~~~~~--~f~v~~v 205 (221)
...++||+|++.. .......+++.+.++|+|||.+++..... . .. ..+.|.+.+.. .++...+
T Consensus 125 ~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 201 (221)
T 3dr5_A 125 LANDSYQLVFGQV---SPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARL 201 (221)
T ss_dssp SCTTCEEEEEECC---CTTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred hcCCCcCeEEEcC---cHHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEe
Confidence 1257899999863 34567789999999999999988732211 1 11 23566666654 4665555
Q ss_pred cC
Q 027594 206 PK 207 (221)
Q Consensus 206 ~~ 207 (221)
+-
T Consensus 202 p~ 203 (221)
T 3dr5_A 202 PL 203 (221)
T ss_dssp SS
T ss_pred ec
Confidence 43
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-14 Score=115.20 Aligned_cols=148 Identities=16% Similarity=0.096 Sum_probs=90.7
Q ss_pred ecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccC
Q 027594 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQM 115 (221)
Q Consensus 38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~ 115 (221)
+.+++..|.+.|... ....++++|||||||||..+..+++.|+ +|+++|. +.|++.++++........
T Consensus 18 vsrg~~kL~~~L~~~-------~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~--- 87 (232)
T 3opn_A 18 VSRGGLKLEKALKEF-------HLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVME--- 87 (232)
T ss_dssp SSTTHHHHHHHHHHT-------TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEEC---
T ss_pred cCCcHHHHHHHHHHc-------CCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccc---
Confidence 345677777777654 3455788999999999999999999986 8999998 558888766533211000
Q ss_pred CCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec-----------
Q 027594 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR----------- 184 (221)
Q Consensus 116 ~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r----------- 184 (221)
..++.. ..... .....||.+.. |+++. .+..++..+.++|+|||.+++.....
T Consensus 88 ------~~~~~~-----~~~~~--~~~~~~d~~~~-D~v~~--~l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~ 151 (232)
T 3opn_A 88 ------QFNFRN-----AVLAD--FEQGRPSFTSI-DVSFI--SLDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKN 151 (232)
T ss_dssp ------SCCGGG-----CCGGG--CCSCCCSEEEE-CCSSS--CGGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-C
T ss_pred ------cceEEE-----eCHhH--cCcCCCCEEEE-EEEhh--hHHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcC
Confidence 001110 00011 11113555443 33332 23789999999999999998863110
Q ss_pred ----Chh----HHHHHHHHHh-cCCeEEEecCCCCC
Q 027594 185 ----STS----VHEQMLQMWK-SNFNVKLVPKAKES 211 (221)
Q Consensus 185 ----~~~----~~~~~~~~~~-~~f~v~~v~~~~~~ 211 (221)
... ..+.+.+.++ .+|++..+......
T Consensus 152 G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~ 187 (232)
T 3opn_A 152 GIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIK 187 (232)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSC
T ss_pred CeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCC
Confidence 111 2234555554 48999887665554
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.45 E-value=8.7e-13 Score=108.14 Aligned_cols=124 Identities=13% Similarity=0.024 Sum_probs=91.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.+++ .+++.+...|+.+.
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~-- 176 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----------IERVTIKVRDISEG-- 176 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----------GGGEEEECCCGGGC--
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----------CCCEEEEECCHHHc--
Confidence 346789999999999999999987 468999998 6699999999988764 24677777665443
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEecC
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK 207 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~ 207 (221)
....+||+|+++. .....++..+.++|+|||.+++...... ....+.+.++ .+|...++..
T Consensus 177 --~~~~~~D~V~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~gf~~~~~~~ 238 (277)
T 1o54_A 177 --FDEKDVDALFLDV-----PDPWNYIDKCWEALKGGGRFATVCPTTN--QVQETLKKLQELPFIRIEVWE 238 (277)
T ss_dssp --CSCCSEEEEEECC-----SCGGGTHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHSSEEEEEEEC
T ss_pred --ccCCccCEEEECC-----cCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCceeEEEE
Confidence 2245899999853 3445788999999999999988765321 2244444443 5786554433
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-12 Score=105.87 Aligned_cols=120 Identities=14% Similarity=0.049 Sum_probs=90.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHh-hhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.+ +. +++.+...|+.+.
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~------------~~v~~~~~d~~~~- 160 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV------------ENVRFHLGKLEEA- 160 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC------------CCEEEEESCGGGC-
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC------------CCEEEEECchhhc-
Confidence 447789999999999999999987 578999998 66999999999887 52 5678887666543
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK 203 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~ 203 (221)
+....+||+|+++ ......+++.+.++|+|||.+++..... .....+.+.++ .+|...
T Consensus 161 --~~~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~gf~~~ 219 (258)
T 2pwy_A 161 --ELEEAAYDGVALD-----LMEPWKVLEKAALALKPDRFLVAYLPNI--TQVLELVRAAEAHPFRLE 219 (258)
T ss_dssp --CCCTTCEEEEEEE-----SSCGGGGHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHTTTTEEEE
T ss_pred --CCCCCCcCEEEEC-----CcCHHHHHHHHHHhCCCCCEEEEEeCCH--HHHHHHHHHHHHCCCceE
Confidence 2234689999984 2345688999999999999998876543 22345555554 467653
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.9e-12 Score=102.81 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=87.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|.+.+++ ..++.+...|+.+.. ..
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~ 155 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNL-----------GKNVKFFNVDFKDAE---VP 155 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTC-----------CTTEEEECSCTTTSC---CC
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC-----------CCcEEEEEcChhhcc---cC
Confidence 46789999999999999999988889999998 6699999999988764 346777765554321 12
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCe
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~ 201 (221)
..+||+|+++.+ ....+++.+.++|+|||.+++..... .....+.+.+++.|.
T Consensus 156 ~~~~D~v~~~~~-----~~~~~l~~~~~~L~~gG~l~~~~~~~--~~~~~~~~~l~~~f~ 208 (248)
T 2yvl_A 156 EGIFHAAFVDVR-----EPWHYLEKVHKSLMEGAPVGFLLPTA--NQVIKLLESIENYFG 208 (248)
T ss_dssp TTCBSEEEECSS-----CGGGGHHHHHHHBCTTCEEEEEESSH--HHHHHHHHHSTTTEE
T ss_pred CCcccEEEECCc-----CHHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHhhCC
Confidence 468999998533 45678899999999999999877543 223444455443343
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=109.72 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=85.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+..+|||+|||+|..+..+++. +.+++++|.+.+++.+++++...++ .+++++...|..+ ..
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~--~~--- 232 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGL-----------SGRAQVVVGSFFD--PL--- 232 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTS--CC---
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCc-----------CcCeEEecCCCCC--CC---
Confidence 3579999999999999999875 4579999997799999999887764 4678998866642 11
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..+||+|+++.++++.++ ...+++.+.++|+|||++++....
T Consensus 233 p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 276 (332)
T 3i53_A 233 PAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV 276 (332)
T ss_dssp CCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred CCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence 228999999999988665 588999999999999999987653
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=102.65 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=80.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..+..+++.+ .+|+++|. +++++.+++++..++. .++.+...|....
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~-- 140 (215)
T 2yxe_A 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY------------DNVIVIVGDGTLG-- 140 (215)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEESCGGGC--
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEECCcccC--
Confidence 4567899999999999999999875 78999998 6699999999988764 4577777555322
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
. ....+||+|+++.++++.. ..+.++|+|||.+++.....
T Consensus 141 ~-~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 141 Y-EPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp C-GGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred C-CCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence 1 1246899999998887644 47889999999999877543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.3e-13 Score=106.11 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=81.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|+..++. .+++.+...|..... +.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--~~ 120 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-----------ESRIELLFGDALQLG--EK 120 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCGGGSH--HH
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECCHHHHH--Hh
Confidence 5679999999999999999987 678999998 6699999999998775 346887775554321 11
Q ss_pred c--CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 141 V--APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 141 ~--~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. .++||+|+++.+. .....+++.+.++|+|||.+++.
T Consensus 121 ~~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~ 159 (233)
T 2gpy_A 121 LELYPLFDVLFIDAAK---GQYRRFFDMYSPMVRPGGLILSD 159 (233)
T ss_dssp HTTSCCEEEEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEE
T ss_pred cccCCCccEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEE
Confidence 2 4689999987653 46788999999999999999885
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.43 E-value=8.1e-12 Score=97.63 Aligned_cols=125 Identities=24% Similarity=0.278 Sum_probs=87.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||+|||+|..++.+++.|+ +|+++|. +.+++.+++|+..++. ++.+...|+.+.
T Consensus 47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~---- 109 (207)
T 1wy7_A 47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------------KFKVFIGDVSEF---- 109 (207)
T ss_dssp SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------------SEEEEESCGGGC----
T ss_pred CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CEEEEECchHHc----
Confidence 34678999999999999999998876 6999998 5699999999888753 577777555432
Q ss_pred ccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEecCCC
Q 027594 140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAK 209 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~~~~ 209 (221)
..+||+|+++++++.. .....+++.+.+++ + .+++... ......+.+.+.+. .+|+++.+....
T Consensus 110 --~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~-~~~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~ 176 (207)
T 1wy7_A 110 --NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--D-VVYSIHL-AKPEVRRFIEKFSWEHGFVVTHRLTTK 176 (207)
T ss_dssp --CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--S-EEEEEEE-CCHHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred --CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--C-cEEEEEe-CCcCCHHHHHHHHHHCCCeEEEEEEEe
Confidence 2489999999887654 34567778888877 4 4454441 12222333444443 478877665433
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=7.4e-13 Score=110.35 Aligned_cols=115 Identities=16% Similarity=0.041 Sum_probs=83.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC---c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~---~ 138 (221)
++.+|||||||+|..+..+++. +.+|+++|. +.+++.++++...+.... ......++.+...|...... .
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~ 108 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRR-----DSEYIFSAEFITADSSKELLIDKF 108 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSS-----CC-CCCEEEEEECCTTTSCSTTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcc-----cccccceEEEEEecccccchhhhc
Confidence 5679999999999999888865 568999998 569999999887653100 00012357777766654321 1
Q ss_pred cccCCCccEEEEcccccCC----cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 139 KAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~----~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.....+||+|+++.++++. +....+++.+.++|+|||.+++....
T Consensus 109 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 109 RDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp SSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred ccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 1124589999999998765 34568999999999999999987764
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.43 E-value=6.1e-13 Score=107.96 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=79.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||||||+|..+..+++.|.+|+++|. +.+++.++++... + +...|. ...+...
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~----------------~--~~~~d~---~~~~~~~ 112 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK----------------N--VVEAKA---EDLPFPS 112 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS----------------C--EEECCT---TSCCSCT
T ss_pred CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCC----------------C--EEECcH---HHCCCCC
Confidence 6789999999999999999999999999998 5699988876331 1 334333 2233346
Q ss_pred CCccEEEEcccccC-CcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 143 PPFDYIIGTDVVYA-EHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~-~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
++||+|+++.++++ ..+...+++.+.++|+|||.+++....+.
T Consensus 113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 156 (260)
T 2avn_A 113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY 156 (260)
T ss_dssp TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence 78999999876554 46699999999999999999999877653
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=9.4e-13 Score=111.14 Aligned_cols=100 Identities=16% Similarity=0.117 Sum_probs=81.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|..++. |+.+.+|+++|. +.+++.+++|++.|++ .+++.+...|..+..
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l-----------~~~v~~~~~D~~~~~------ 256 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKL-----------EHKIIPILSDVREVD------ 256 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCGGGCC------
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECChHHhc------
Confidence 678999999999999999 885568999998 6699999999999986 357888886654332
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.+||+|+++++.+. ..++..+.++|+|||.+++......
T Consensus 257 ~~fD~Vi~dpP~~~----~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 257 VKGNRVIMNLPKFA----HKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp CCEEEEEECCTTTG----GGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred CCCcEEEECCcHhH----HHHHHHHHHHcCCCCEEEEEEeecC
Confidence 68999999766443 3788888999999999888665554
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.5e-12 Score=111.19 Aligned_cols=139 Identities=12% Similarity=0.107 Sum_probs=97.4
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
+..+.+++.+.. ...++.+|||+|||+|.+++.+|+.+.+|+++|. +++++.+++|++.|++
T Consensus 271 ~e~l~~~~~~~l-------~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~---------- 333 (433)
T 1uwv_A 271 NQKMVARALEWL-------DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL---------- 333 (433)
T ss_dssp HHHHHHHHHHHH-------TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHhh-------cCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence 455556665442 2335679999999999999999999889999998 5699999999999885
Q ss_pred CCCceEEEEEEecCCCC-ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHH-HHHHHHHhc
Q 027594 121 LLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVH-EQMLQMWKS 198 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~-~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~-~~~~~~~~~ 198 (221)
.++.+...|+.+... .+....+||+|+++++.-.. ..+++.+.+ ++|++.+|++... ... +......+.
T Consensus 334 --~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc~p---~tlard~~~l~~~ 404 (433)
T 1uwv_A 334 --QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSCNP---ATLARDSEALLKA 404 (433)
T ss_dssp --CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEESCH---HHHHHHHHHHHHT
T ss_pred --CceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEECCh---HHHHhhHHHHHHC
Confidence 478888877765322 22334689999997764433 246666554 6899998885432 222 232233346
Q ss_pred CCeEEEec
Q 027594 199 NFNVKLVP 206 (221)
Q Consensus 199 ~f~v~~v~ 206 (221)
+|++..+.
T Consensus 405 Gy~~~~~~ 412 (433)
T 1uwv_A 405 GYTIARLA 412 (433)
T ss_dssp TCEEEEEE
T ss_pred CcEEEEEE
Confidence 89887653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.5e-13 Score=105.14 Aligned_cols=106 Identities=13% Similarity=0.053 Sum_probs=78.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.+++. | .+|+++|. +.+++.+.+++..+ .++.+...|..+...
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--------------~~v~~~~~d~~~~~~ 140 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--------------TNIIPVIEDARHPHK 140 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--------------TTEEEECSCTTCGGG
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--------------CCeEEEEcccCChhh
Confidence 346789999999999999999876 3 68999998 55888888877764 246776655543222
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.+....+||+|+++.+ .......++..+.++|+|||.+++....
T Consensus 141 ~~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 141 YRMLIAMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp GGGGCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred hcccCCcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 2334578999998654 3444466788899999999999996654
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.5e-12 Score=102.91 Aligned_cols=123 Identities=13% Similarity=0.191 Sum_probs=91.0
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
+.+|||+|||+|..+..++.. +++|. +.+++.++++ + +.+...+... .+...+
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~----~---------------~~~~~~d~~~---~~~~~~ 101 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR----G---------------VFVLKGTAEN---LPLKDE 101 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT----T---------------CEEEECBTTB---CCSCTT
T ss_pred CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc----C---------------CEEEEccccc---CCCCCC
Confidence 789999999999999888765 89998 5688888876 2 3555544332 333456
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh---------------------HHHHHHHHHh-cCCe
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS---------------------VHEQMLQMWK-SNFN 201 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~---------------------~~~~~~~~~~-~~f~ 201 (221)
+||+|+++.++++..+...+++.+.++|+|||.+++....+... ..+.+.+.++ .+|+
T Consensus 102 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~ 181 (219)
T 1vlm_A 102 SFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFE 181 (219)
T ss_dssp CEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCE
T ss_pred CeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCe
Confidence 89999999999998889999999999999999999987654321 1244555554 4898
Q ss_pred EEEecCCCCCcc
Q 027594 202 VKLVPKAKESTM 213 (221)
Q Consensus 202 v~~v~~~~~~~~ 213 (221)
+..+.......-
T Consensus 182 ~~~~~~~~~~~p 193 (219)
T 1vlm_A 182 EFKVVQTLFKHP 193 (219)
T ss_dssp EEEEEEECCSCG
T ss_pred EEEEecccCCCC
Confidence 876655544433
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-12 Score=111.42 Aligned_cols=107 Identities=12% Similarity=0.161 Sum_probs=85.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
...+|||||||+|..+..+++. +.+++++|.+.+++.+++++...+. .+++++...|..... .+.
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-~~~- 245 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSG-----------SERIHGHGANLLDRD-VPF- 245 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTT-----------GGGEEEEECCCCSSS-CCC-
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCc-----------ccceEEEEccccccC-CCC-
Confidence 5579999999999999999875 5689999998899999999887654 357888886664432 011
Q ss_pred CCCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
+.+||+|+++.++++.. ....+++.+.+.|+|||++++....
T Consensus 246 p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (363)
T 3dp7_A 246 PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL 289 (363)
T ss_dssp CCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred CCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence 36899999999998654 3468899999999999999987653
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=107.72 Aligned_cols=126 Identities=13% Similarity=0.009 Sum_probs=88.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||+|||+|..++.++.. +.+|+++|. +.+++.+++|++.++. .++.+...|.....
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------------~~v~~~~~D~~~~~--- 182 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------------LNVILFHSSSLHIG--- 182 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------------CSEEEESSCGGGGG---
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------------CeEEEEECChhhcc---
Confidence 6789999999999999999875 368999998 5699999999999875 45777765543322
Q ss_pred ccCCCccEEEEcccccC------CcC----------------HHHHHHHHHHhcCCCeEEEEEEEecCh----hHHHHHH
Q 027594 140 AVAPPFDYIIGTDVVYA------EHL----------------LEPLLQTIFALSGPKTTILLGYEIRST----SVHEQML 193 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~------~~~----------------~~~l~~~~~~ll~~~g~~~i~~~~r~~----~~~~~~~ 193 (221)
....+||+|+++.+... ..+ ...+++.+.++|+|||+++++...-.. .+...|+
T Consensus 183 ~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~l 262 (315)
T 1ixk_A 183 ELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWAL 262 (315)
T ss_dssp GGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred cccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHHH
Confidence 23568999998655321 111 157889999999999999886644332 2233444
Q ss_pred HHHhcCCeEEEec
Q 027594 194 QMWKSNFNVKLVP 206 (221)
Q Consensus 194 ~~~~~~f~v~~v~ 206 (221)
+. .+|++..+.
T Consensus 263 ~~--~~~~~~~~~ 273 (315)
T 1ixk_A 263 DN--FDVELLPLK 273 (315)
T ss_dssp HH--SSEEEECCC
T ss_pred hc--CCCEEecCC
Confidence 32 356665543
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=109.55 Aligned_cols=100 Identities=24% Similarity=0.185 Sum_probs=79.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.+++.+. +|+++|. +++++.+++|++.++. .++.+...|..+..
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------------~~v~~~~~d~~~~~- 139 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------------ENVIFVCGDGYYGV- 139 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGCC-
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CCeEEEECChhhcc-
Confidence 44778999999999999999998755 4999998 6699999999998875 45888876664432
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+||+|++..++.+.. +.+.++|+|||++++...
T Consensus 140 --~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 140 --PEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp --GGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred --ccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 1246899999998887654 567889999999988643
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.9e-13 Score=114.70 Aligned_cols=146 Identities=12% Similarity=0.074 Sum_probs=97.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHH-------hhhccccCCCCCCCCCceEEEEEE
Q 027594 62 KLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEW-------NTSRISQMNPGSDLLGSIQAVELD 131 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~-------n~~~~~~~~~~~~~~~~v~~~~~d 131 (221)
..++.+|||||||+|.+++.+|. .+++ |+++|+ +++++.+++|++. +++. ..+|.+...|
T Consensus 171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~----------~~rVefi~GD 240 (438)
T 3uwp_A 171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKK----------HAEYTLERGD 240 (438)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBC----------CCEEEEEECC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCC----------CCCeEEEECc
Confidence 44788999999999999999885 4664 999998 5699999887643 2220 1468888855
Q ss_pred ecCCCCccccC--CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHH--HHHHHHHhcCCeEEEecC
Q 027594 132 WGNEDHIKAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVH--EQMLQMWKSNFNVKLVPK 207 (221)
Q Consensus 132 w~~~~~~~~~~--~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~--~~~~~~~~~~f~v~~v~~ 207 (221)
..+ .+... ..||+|+++.+++ ..+....+..+.+.|+|||++++.......+.. ..-+.-...-++++++..
T Consensus 241 ~~~---lp~~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~i~~rnl~di~~il~v~el~~ 316 (438)
T 3uwp_A 241 FLS---EEWRERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSP 316 (438)
T ss_dssp TTS---HHHHHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEESSCSSCTTCCCCSSSTTSGGGSEEEEECCC
T ss_pred ccC---CccccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEeecccCCCCCCCcccccChhhhheeeeccC
Confidence 433 22211 4799999987765 456667778888999999999876544332210 000111234567777776
Q ss_pred CCCCcccCCCCCCC
Q 027594 208 AKESTMWGNPLGLY 221 (221)
Q Consensus 208 ~~~~~~~~~~~~~~ 221 (221)
.....-|....|.|
T Consensus 317 ~~~sVSWT~~~g~y 330 (438)
T 3uwp_A 317 LKGSVSWTGKPVSY 330 (438)
T ss_dssp CTTCCCTTSSCCCC
T ss_pred CCCceeeccCCccE
Confidence 66666666666665
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-13 Score=110.13 Aligned_cols=83 Identities=19% Similarity=0.205 Sum_probs=62.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC-C-Cc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D-HI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~-~-~~ 138 (221)
++.+|||+|||+|.+++.++.. +++|+++|+ +++++.+++|+..+++ .+++++...|..+. . ..
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~~ 133 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----------SDLIKVVKVPQKTLLMDAL 133 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTCSSTTTS
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------CccEEEEEcchhhhhhhhh
Confidence 5779999999999999988865 689999998 6699999999998875 34688888664331 1 11
Q ss_pred ccc-CCCccEEEEcccccCC
Q 027594 139 KAV-APPFDYIIGTDVVYAE 157 (221)
Q Consensus 139 ~~~-~~~fD~Vi~~d~~y~~ 157 (221)
... +.+||+|+++++++..
T Consensus 134 ~~~~~~~fD~i~~npp~~~~ 153 (254)
T 2h00_A 134 KEESEIIYDFCMCNPPFFAN 153 (254)
T ss_dssp TTCCSCCBSEEEECCCCC--
T ss_pred hcccCCcccEEEECCCCccC
Confidence 111 2589999999887753
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.1e-12 Score=96.69 Aligned_cols=134 Identities=15% Similarity=0.114 Sum_probs=89.6
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecchhhHHHHHHHHHHhhhccccCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
+...+.+.+... ....++.+|||+|||+|..+..+++. | .+|+++|.+.+++.
T Consensus 6 ~~~~l~~~~~~~-------~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~----------------- 61 (180)
T 1ej0_A 6 AWFKLDEIQQSD-------KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI----------------- 61 (180)
T ss_dssp HHHHHHHHHHHH-------CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC-----------------
T ss_pred HHHHHHHHHHHh-------CCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc-----------------
Confidence 444555555543 23446789999999999999999876 3 68999998544321
Q ss_pred CCCCCCceEEEEEEecCCCC---cc--ccCCCccEEEEcccccCCcCH-----------HHHHHHHHHhcCCCeEEEEEE
Q 027594 118 GSDLLGSIQAVELDWGNEDH---IK--AVAPPFDYIIGTDVVYAEHLL-----------EPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~---~~--~~~~~fD~Vi~~d~~y~~~~~-----------~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.++.+...|+.+... .. ....+||+|+++.+++..... ..+++.+.++|+|||.+++..
T Consensus 62 -----~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 62 -----VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp -----TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -----CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 246666655433210 00 235689999999888765554 688999999999999998876
Q ss_pred EecChhHHHHHHHHHhcCCeEEEe
Q 027594 182 EIRSTSVHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 182 ~~r~~~~~~~~~~~~~~~f~v~~v 205 (221)
..... ...+.+.++..|....+
T Consensus 137 ~~~~~--~~~~~~~~~~~~~~~~~ 158 (180)
T 1ej0_A 137 FQGEG--FDEYLREIRSLFTKVKV 158 (180)
T ss_dssp ESSTT--HHHHHHHHHHHEEEEEE
T ss_pred ecCCc--HHHHHHHHHHhhhhEEe
Confidence 64433 24455555555654433
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-13 Score=109.26 Aligned_cols=128 Identities=19% Similarity=0.140 Sum_probs=93.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++|||||||+|..++.+|+. +++|+++|. +++++.+++|++.+++ .+++++...|..+. ..
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~--l~ 126 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-----------EHKIKLRLGPALDT--LH 126 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-----------TTTEEEEESCHHHH--HH
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHH--HH
Confidence 5679999999999999999974 578999998 5699999999998876 45788888554322 11
Q ss_pred cc-----CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHhc--CC
Q 027594 140 AV-----APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NF 200 (221)
Q Consensus 140 ~~-----~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------------~~~~~~~~~~~~--~f 200 (221)
.. .++||+|++... ......+++.+.++|+|||.+++....... ...+.|.+.+.. .|
T Consensus 127 ~~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (242)
T 3r3h_A 127 SLLNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRV 203 (242)
T ss_dssp HHHHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSE
T ss_pred HHhhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCE
Confidence 11 468999998643 456778899999999999998875433211 124567666654 46
Q ss_pred eEEEecC
Q 027594 201 NVKLVPK 207 (221)
Q Consensus 201 ~v~~v~~ 207 (221)
+...++.
T Consensus 204 ~~~~lp~ 210 (242)
T 3r3h_A 204 FVSLLAI 210 (242)
T ss_dssp EEEEESS
T ss_pred EEEEEEc
Confidence 6555543
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.5e-12 Score=108.02 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=84.4
Q ss_pred CeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
.+|||+|||+|..+..+++. +.+++++|.+.+++.+++++..++. .+++++...|+.+. . ..
T Consensus 169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~----~-~~ 232 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLA-----------GERVSLVGGDMLQE----V-PS 232 (334)
T ss_dssp CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHH-----------TTSEEEEESCTTTC----C-CS
T ss_pred CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCC-----------CCcEEEecCCCCCC----C-CC
Confidence 79999999999999999876 5689999996699999999887765 45788888665441 1 35
Q ss_pred CccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 144 PFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
+||+|+++.++++.+. ...+++.+.++|+|||++++....
T Consensus 233 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 274 (334)
T 2ip2_A 233 NGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT 274 (334)
T ss_dssp SCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred CCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 7999999999986554 448999999999999999998643
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.2e-12 Score=110.83 Aligned_cols=106 Identities=12% Similarity=0.048 Sum_probs=86.5
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
+.+|||+|||+|..+..+++. +.+++++|.+.+++.+++++...+. .+++++...|+.+... ...
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~~ 246 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDL-----------GGRVEFFEKNLLDARN--FEG 246 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC-----------GGGEEEEECCTTCGGG--GTT
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCC-----------CCceEEEeCCcccCcc--cCC
Confidence 789999999999999999886 4589999997799999999888764 3568888866543321 134
Q ss_pred CCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.+||+|+++.++++.++ ...+++.+.++|+|||++++....
T Consensus 247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 289 (352)
T 3mcz_A 247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT 289 (352)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 57999999999987654 589999999999999999987653
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.1e-12 Score=108.69 Aligned_cols=145 Identities=14% Similarity=0.134 Sum_probs=97.9
Q ss_pred eEEEEEcCeEEEEeeCCCCC-c---ccceecc--h--HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH
Q 027594 13 VINLEVLGHQLQFSQDPNSK-H---LGTTVWD--A--SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL 84 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~-~---~g~~~W~--~--~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~ 84 (221)
.+.+.+.+..+++..+.... . .|.+.+. + ...+++.+... . ..++.+|||+|||+|.+++.++.
T Consensus 166 ~i~~~~~~d~~~~~ld~~g~~~l~~rgyr~~~~~a~l~~~la~~l~~~-------~-~~~~~~vLD~gCGsG~~~i~~a~ 237 (373)
T 3tm4_A 166 IFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIEL-------A-ELDGGSVLDPMCGSGTILIELAL 237 (373)
T ss_dssp EEEEEEETTEEEEEEESSCSSCTTCCTTCCSCCTTCCCHHHHHHHHHH-------H-TCCSCCEEETTCTTCHHHHHHHH
T ss_pred EEEEEEECCEEEEEEEccCCcccccCCcccccCCCCccHHHHHHHHHh-------h-cCCCCEEEEccCcCcHHHHHHHH
Confidence 45666777777776665321 1 2222221 1 33455555443 1 23678999999999999999999
Q ss_pred hCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC----
Q 027594 85 LGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE---- 157 (221)
Q Consensus 85 ~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~---- 157 (221)
.+. +|+++|+ +.+++.+++|++.+++ .+++++...|..+ .+....+||+|++++++...
T Consensus 238 ~~~~~~v~g~Dis~~~l~~A~~n~~~~gl-----------~~~i~~~~~D~~~---~~~~~~~fD~Ii~npPyg~r~~~~ 303 (373)
T 3tm4_A 238 RRYSGEIIGIEKYRKHLIGAEMNALAAGV-----------LDKIKFIQGDATQ---LSQYVDSVDFAISNLPYGLKIGKK 303 (373)
T ss_dssp TTCCSCEEEEESCHHHHHHHHHHHHHTTC-----------GGGCEEEECCGGG---GGGTCSCEEEEEEECCCC------
T ss_pred hCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------CCceEEEECChhh---CCcccCCcCEEEECCCCCcccCcc
Confidence 887 8999998 5699999999999876 3578888866544 33335789999998885531
Q ss_pred cC----HHHHHHHHHHhcCCCeEEEEEE
Q 027594 158 HL----LEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 158 ~~----~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.. ...+++.+.++| +|.+++..
T Consensus 304 ~~~~~ly~~~~~~l~r~l--~g~~~~i~ 329 (373)
T 3tm4_A 304 SMIPDLYMKFFNELAKVL--EKRGVFIT 329 (373)
T ss_dssp CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred hhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 11 366778888888 44444433
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=6.6e-12 Score=106.61 Aligned_cols=104 Identities=14% Similarity=0.160 Sum_probs=85.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||+|||+|..+..+++. +.+++++|.+.+++.+++++..++. .+++++...|..+. +
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---~- 253 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKE---S- 253 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC-----------TTTEEEEECCTTTS---C-
T ss_pred CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC-----------CCCEEEEeCccccC---C-
Confidence 35679999999999999999987 5589999996699999999988765 35688888665433 1
Q ss_pred cCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
...+|+|+++.++++..+ ...+++.+.++|+|||++++...
T Consensus 254 -~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~ 296 (359)
T 1x19_A 254 -YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM 296 (359)
T ss_dssp -CCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred -CCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 223499999999988665 78899999999999999988764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-12 Score=107.66 Aligned_cols=106 Identities=14% Similarity=0.169 Sum_probs=82.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++++|||+| |+|.+++.+++.++ +|+++|+ +++++.+++|++.+++ .++++...|+... +
T Consensus 170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~------------~~v~~~~~D~~~~--l 234 (373)
T 2qm3_A 170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY------------EDIEIFTFDLRKP--L 234 (373)
T ss_dssp CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC------------CCEEEECCCTTSC--C
T ss_pred CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CCEEEEEChhhhh--c
Confidence 34688999999 99999999998875 7999998 6799999999999875 3688888666442 2
Q ss_pred cc-cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE-EEEEEe
Q 027594 139 KA-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI-LLGYEI 183 (221)
Q Consensus 139 ~~-~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~-~i~~~~ 183 (221)
+. ..++||+|++++++... ....+++.+.++|+|||++ +++...
T Consensus 235 ~~~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 235 PDYALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp CTTTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred hhhccCCccEEEECCCCchH-HHHHHHHHHHHHcccCCeEEEEEEec
Confidence 21 24589999998775433 3688999999999999954 554443
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=105.94 Aligned_cols=104 Identities=14% Similarity=0.025 Sum_probs=80.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
++++|||||||+|..++.+++. +.+|+++|. +++++.+++|++.++. .+++++...|..+... .
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~l~~l 147 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----------DHKIDFREGPALPVLDEM 147 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCeEEEECCHHHHHHHH
Confidence 5679999999999999999976 679999998 5699999999998775 3568888755433211 1
Q ss_pred cc---cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 ~~---~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.. ...+||+|++... ......+++.+.++|+|||.+++..
T Consensus 148 ~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 148 IKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp HHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred HhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 00 1468999998632 4567889999999999999987743
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-12 Score=103.83 Aligned_cols=103 Identities=15% Similarity=0.096 Sum_probs=76.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
.++.+|||+|||+|..++.+++. + .+|+++|. +++++.+++|+..+ .++.+...|...... .
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------~~v~~~~~d~~~~~~~~ 138 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--------------ENIIPILGDANKPQEYA 138 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--------------TTEEEEECCTTCGGGGT
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--------------CCeEEEECCCCCccccc
Confidence 46789999999999999999987 4 68999998 56999999886654 357777655443111 2
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.. ..+||+|+. ++ ........+++.+.++|+|||.++++..
T Consensus 139 ~~-~~~~D~v~~-~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 179 (230)
T 1fbn_A 139 NI-VEKVDVIYE-DV-AQPNQAEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp TT-SCCEEEEEE-CC-CSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cc-CccEEEEEE-ec-CChhHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 22 268999993 22 2233347789999999999999999744
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.40 E-value=3e-12 Score=101.77 Aligned_cols=100 Identities=14% Similarity=0.147 Sum_probs=79.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|..+..++..+.+|+++|. +++++.+++++..++ ++.+...|.... . .
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~--------------~v~~~~~d~~~~--~-~ 130 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN--------------NIKLILGDGTLG--Y-E 130 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS--------------SEEEEESCGGGC--C-G
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC--------------CeEEEECCcccc--c-c
Confidence 446789999999999999999999999999998 569999998876542 467777665442 1 1
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
...+||+|+++.++++.. ..+.++|+|||.+++.....
T Consensus 131 ~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 131 EEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred cCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 246899999998887643 46788999999999876544
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-12 Score=102.85 Aligned_cols=100 Identities=13% Similarity=0.065 Sum_probs=79.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.++. .+++++...|+.+.. +
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--~ 122 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----------IDRVELQVGDPLGIA--A 122 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----------GGGEEEEESCHHHHH--T
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----------CceEEEEEecHHHHh--c
Confidence 5679999999999999999976 678999998 5699999999998765 346888876554321 1
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
...+ ||+|++. ........+++.+.++|+|||.+++.
T Consensus 123 ~~~~-fD~v~~~---~~~~~~~~~l~~~~~~LkpgG~lv~~ 159 (210)
T 3c3p_A 123 GQRD-IDILFMD---CDVFNGADVLERMNRCLAKNALLIAV 159 (210)
T ss_dssp TCCS-EEEEEEE---TTTSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred cCCC-CCEEEEc---CChhhhHHHHHHHHHhcCCCeEEEEE
Confidence 1235 9999986 23567789999999999999998873
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-12 Score=103.97 Aligned_cols=130 Identities=15% Similarity=0.082 Sum_probs=91.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
++++|||||||+|..++.+++. +.+|+++|. +++++.+++++..++. .+++.+...|..+... .
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~~~~~ 128 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----------ENKIFLKLGSALETLQVL 128 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCEEEEECCHHHHHHHH
Confidence 5789999999999999999987 578999998 6699999999988765 2457777755432110 0
Q ss_pred c-----------cc-C-CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHH
Q 027594 139 K-----------AV-A-PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQML 193 (221)
Q Consensus 139 ~-----------~~-~-~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------------~~~~~~~ 193 (221)
. .. . ++||+|+++ ........+++.+.++|+|||.+++....... ...+.|.
T Consensus 129 ~~~~~~~~~~~~f~~~~~~fD~I~~~---~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~ 205 (239)
T 2hnk_A 129 IDSKSAPSWASDFAFGPSSIDLFFLD---ADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFN 205 (239)
T ss_dssp HHCSSCCGGGTTTCCSTTCEEEEEEC---SCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHH
T ss_pred HhhcccccccccccCCCCCcCEEEEe---CCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHH
Confidence 0 01 1 689999987 33556778999999999999999885422111 1235565
Q ss_pred HHHhc--CCeEEEecC
Q 027594 194 QMWKS--NFNVKLVPK 207 (221)
Q Consensus 194 ~~~~~--~f~v~~v~~ 207 (221)
+.+.. .|.+..++-
T Consensus 206 ~~~~~~~~~~~~~~p~ 221 (239)
T 2hnk_A 206 ELVYNDSLVDVSLVPI 221 (239)
T ss_dssp HHHHHCTTEEEEEECS
T ss_pred HHHhhCCCeEEEEEEc
Confidence 55543 566665554
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.39 E-value=9.8e-13 Score=103.92 Aligned_cols=101 Identities=18% Similarity=0.154 Sum_probs=79.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||+|||+|..+..+++.+.+|+++|. +.+++.++++.. .+...|.... ..+..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~~-------------------~~~~~d~~~~-~~~~~ 90 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKLD-------------------HVVLGDIETM-DMPYE 90 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTSS-------------------EEEESCTTTC-CCCSC
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCC-------------------cEEEcchhhc-CCCCC
Confidence 36789999999999999999988889999998 558887775421 3344333221 12233
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.++||+|+++.++++..+...+++.+.++|+|||.+++..+.
T Consensus 91 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 91 EEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp TTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred CCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 578999999999999888999999999999999999998754
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-12 Score=102.65 Aligned_cols=97 Identities=8% Similarity=0.062 Sum_probs=76.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.++.+|||+|||+|..+..+++.+.+|+++|. +.+++.++++. .++.+...|.... +.
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~---~~- 97 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL-----------------PDATLHQGDMRDF---RL- 97 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC-----------------TTCEEEECCTTTC---CC-
T ss_pred CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC-----------------CCCEEEECCHHHc---cc-
Confidence 35689999999999999999998889999998 56999888753 2356666555432 22
Q ss_pred CCCccEEEE-cccccCC---cCHHHHHHHHHHhcCCCeEEEEE
Q 027594 142 APPFDYIIG-TDVVYAE---HLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 142 ~~~fD~Vi~-~d~~y~~---~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
..+||+|++ .+++++. +....+++.+.++|+|||.+++.
T Consensus 98 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (239)
T 3bxo_A 98 GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE 140 (239)
T ss_dssp SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 568999995 5577665 56778999999999999999885
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-12 Score=103.43 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=78.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.+++. | .+|+++|. +.+++.+++|++.+ .++.+...|..+...
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--------------~~v~~~~~d~~~~~~ 136 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--------------RNIVPILGDATKPEE 136 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--------------TTEEEEECCTTCGGG
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--------------CCCEEEEccCCCcch
Confidence 346789999999999999999965 4 68999998 56999998887754 257777765543221
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
......+||+|+++.+ .......++..+.++|+|||.+++....
T Consensus 137 ~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 180 (227)
T 1g8a_A 137 YRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIAVKS 180 (227)
T ss_dssp GTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred hhcccCCceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 1122458999997654 3333345599999999999999988543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=104.10 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=78.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||+|||+|..++.+++.+ .+|+++|. +++++.+++|+..++. .++.+...|.... .+
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~--~~ 154 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------------KNVHVILGDGSKG--FP 154 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGC--CG
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCcEEEECCcccC--CC
Confidence 4467899999999999999999876 78999997 6699999999988764 4577777554211 11
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
...+||+|+++.++.+.. ..+.++|+|||.+++.....
T Consensus 155 -~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 155 -PKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp -GGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred -CCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEecC
Confidence 134699999988776533 36788999999999977644
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-12 Score=105.27 Aligned_cols=109 Identities=12% Similarity=0.037 Sum_probs=81.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~- 138 (221)
++.+|||+|||+|..++.++.. + .+|+++|. +.+++.+++|++.++. .++.+...|.......
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------------~~v~~~~~D~~~~~~~~ 150 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------------LNTIIINADMRKYKDYL 150 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCHHHHHHHH
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------------CcEEEEeCChHhcchhh
Confidence 6789999999999999998873 4 68999998 5699999999998875 4677777554322110
Q ss_pred cccCCCccEEEEcccccCC------------------cCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 139 KAVAPPFDYIIGTDVVYAE------------------HLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~------------------~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
.....+||+|+++.+.... .....+++.+.++|+|||.++++...-
T Consensus 151 ~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 151 LKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp HHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 0015689999987654321 345788999999999999998876543
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-12 Score=108.10 Aligned_cols=139 Identities=13% Similarity=0.050 Sum_probs=87.3
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
+..+..++.+.. ...+.+|||+|||+|.+++.+|+.+.+|+++|. +++++.+++|++.|++
T Consensus 199 ~~~l~~~~~~~~--------~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~---------- 260 (369)
T 3bt7_A 199 NIQMLEWALDVT--------KGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI---------- 260 (369)
T ss_dssp HHHHHHHHHHHT--------TTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC----------
T ss_pred HHHHHHHHHHHh--------hcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence 355666665542 223678999999999999999998889999998 6699999999999985
Q ss_pred CCCceEEEEEEecCCCC-cccc------------CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh
Q 027594 121 LLGSIQAVELDWGNEDH-IKAV------------APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~-~~~~------------~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
+++++...|..+... .... ..+||+|+.+++... .. ..+.++++++|.++++... +.
T Consensus 261 --~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g--~~----~~~~~~l~~~g~ivyvsc~--p~ 330 (369)
T 3bt7_A 261 --DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG--LD----SETEKMVQAYPRILYISCN--PE 330 (369)
T ss_dssp --CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC--CC----HHHHHHHTTSSEEEEEESC--HH
T ss_pred --CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccc--cH----HHHHHHHhCCCEEEEEECC--HH
Confidence 467777755432210 0000 137999998777432 22 2334445566765554332 22
Q ss_pred HHHHHHHHHhcCCeEEEecCC
Q 027594 188 VHEQMLQMWKSNFNVKLVPKA 208 (221)
Q Consensus 188 ~~~~~~~~~~~~f~v~~v~~~ 208 (221)
...+=+..+.++|+++.+.--
T Consensus 331 t~ard~~~l~~~y~~~~~~~~ 351 (369)
T 3bt7_A 331 TLCKNLETLSQTHKVERLALF 351 (369)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHhhCcEEEEEEee
Confidence 222222333345777655433
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-12 Score=112.27 Aligned_cols=109 Identities=18% Similarity=0.279 Sum_probs=78.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHH-------HHHHHHhhhccccCCCCCCCCCceEEEEEE
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLL-------KRNVEWNTSRISQMNPGSDLLGSIQAVELD 131 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-ga-~v~~~D~-~~~l~~~-------~~n~~~n~~~~~~~~~~~~~~~~v~~~~~d 131 (221)
..++.+|||||||+|..++.+|+. ++ +|+++|. +.+++.+ ++|++.+++. ..++.+...+
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~----------~~nV~~i~gD 309 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR----------LNNVEFSLKK 309 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----------CCCEEEEESS
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----------CCceEEEEcC
Confidence 447889999999999999999975 54 7999998 5588888 8888776630 1467776531
Q ss_pred -ecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 132 -WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 132 -w~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
+...........+||+|+++.+++. ......++.+.+.|+|||.+++..
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l~~-~d~~~~L~el~r~LKpGG~lVi~d 359 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFLFD-EDLNKKVEKILQTAKVGCKIISLK 359 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTTCC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccccccccCCCCEEEEeCcccc-ccHHHHHHHHHHhCCCCeEEEEee
Confidence 1110001112368999999877754 567778899999999999998864
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-12 Score=103.01 Aligned_cols=130 Identities=14% Similarity=0.107 Sum_probs=92.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC-Cc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~-~~ 138 (221)
++++|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.++. .+++++...|..+.. ..
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~~d~~~~~~~~ 137 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----------EHKIDLRLKPALETLDEL 137 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----------CCeEEEEEcCHHHHHHHH
Confidence 5789999999999999999975 568999998 6699999999998875 357888775543221 11
Q ss_pred ccc--CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHhc--CCeE
Q 027594 139 KAV--APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNV 202 (221)
Q Consensus 139 ~~~--~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------------~~~~~~~~~~~~--~f~v 202 (221)
... ..+||+|++... ......+++.+.++|+|||.+++....... ...+.|.+.+.. .+..
T Consensus 138 ~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 214 (229)
T 2avd_A 138 LAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYI 214 (229)
T ss_dssp HHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEE
T ss_pred HhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEE
Confidence 111 168999998644 456778999999999999998885432211 123556655543 4666
Q ss_pred EEecC
Q 027594 203 KLVPK 207 (221)
Q Consensus 203 ~~v~~ 207 (221)
..++.
T Consensus 215 ~~lp~ 219 (229)
T 2avd_A 215 SLLPL 219 (229)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 65543
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.3e-12 Score=108.36 Aligned_cols=105 Identities=15% Similarity=0.082 Sum_probs=85.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||+|||+|..+..+++.+ .+++++|++.+++.+++|+..++. .+++++...|+.+. .
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~-- 246 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL-----------SDRVDVVEGDFFEP--L-- 246 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--C--
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCC-----------CCceEEEeCCCCCC--C--
Confidence 356799999999999999998874 478999996699999999988765 35788888766432 1
Q ss_pred cCCCccEEEEcccccCCcCH--HHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~--~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...||+|+++.++++.... ..+++.+.++|+|||++++....
T Consensus 247 -~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 247 -PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp -SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 2359999999999876544 58999999999999999987654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.37 E-value=6.5e-12 Score=102.74 Aligned_cols=103 Identities=18% Similarity=0.157 Sum_probs=80.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHh-h-hccccCCCCCCCCCceEEEEEEecCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-T-SRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n-~-~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.+ + + .+++.+...|..+.
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~-----------~~~v~~~~~d~~~~ 165 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP-----------PDNWRLVVSDLADS 165 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC-----------CTTEEEECSCGGGC
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-----------CCcEEEEECchHhc
Confidence 446789999999999999999975 568999998 66999999999887 4 2 24677777555433
Q ss_pred CCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 136 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 136 ~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.....+||+|+++. .....++..+.++|+|||.+++....
T Consensus 166 ---~~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 166 ---ELPDGSVDRAVLDM-----LAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp ---CCCTTCEEEEEEES-----SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred ---CCCCCceeEEEECC-----cCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 22356899999843 24557899999999999999887654
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=99.92 Aligned_cols=115 Identities=7% Similarity=-0.033 Sum_probs=78.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||||||+|..++.+++.+ .+|+++|+ +.+++.+++|+..+...... .....++.+...|..+......
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~----~~~~~nv~~~~~D~~~~l~~~~ 124 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTAS----KHGFQNINVLRGNAMKFLPNFF 124 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-C----CSTTTTEEEEECCTTSCGGGTS
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhcccc----ccCCCcEEEEeccHHHHHHHhc
Confidence 67799999999999999999886 46999998 56999999999887321000 0002468888766543211113
Q ss_pred cCCCccEEEEccc--ccCC------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDV--VYAE------HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~--~y~~------~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+|.|+...+ .+.. -....++..+.++|+|||.+++...
T Consensus 125 ~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 125 EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 3568999876522 2110 0125899999999999999988543
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-11 Score=106.36 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=76.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||+|||+|.+++.+|+.+.+|+++|. +++++.+++|++.|++ . +++...|..+.. .
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl------------~-v~~~~~d~~~~~-----~ 351 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV------------D-AEFEVASDREVS-----V 351 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC------------C-EEEEECCTTTCC-----C
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC------------c-EEEEECChHHcC-----c
Confidence 5679999999999999999999899999998 5699999999999985 3 777775554331 2
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.+||+|+++++.. ...+.+++.+.. ++|+|.+|++.
T Consensus 352 ~~fD~Vv~dPPr~--g~~~~~~~~l~~-l~p~givyvsc 387 (425)
T 2jjq_A 352 KGFDTVIVDPPRA--GLHPRLVKRLNR-EKPGVIVYVSC 387 (425)
T ss_dssp TTCSEEEECCCTT--CSCHHHHHHHHH-HCCSEEEEEES
T ss_pred cCCCEEEEcCCcc--chHHHHHHHHHh-cCCCcEEEEEC
Confidence 2899999977632 223456666654 89999999865
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.36 E-value=8e-12 Score=114.78 Aligned_cols=110 Identities=11% Similarity=0.047 Sum_probs=83.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||||||+|..++.+++.+ .+|+++|+ +.+++.+++++....... .....++++...|..+ .+
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAk------r~gl~nVefiqGDa~d---Lp 791 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE------ACNVKSATLYDGSILE---FD 791 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTT------CSSCSEEEEEESCTTS---CC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchh------hcCCCceEEEECchHh---CC
Confidence 67899999999999999999988 68999998 569999998776532100 0012467887755433 34
Q ss_pred ccCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
....+||+|+++.++++... ...+++.+.++|+|| .+++..+.
T Consensus 792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 44678999999999998665 346899999999999 77776654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=103.03 Aligned_cols=123 Identities=11% Similarity=0.133 Sum_probs=82.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh------CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~------ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
++.+|||||||+|..++.+++. +++|+++|. +++++.++ +. ..++++...|+.+..
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~-----------~~~v~~~~gD~~~~~ 143 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SD-----------MENITLHQGDCSDLT 143 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GG-----------CTTEEEEECCSSCSG
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------cc-----------CCceEEEECcchhHH
Confidence 4579999999999999999986 678999998 55777665 11 246888886665431
Q ss_pred CccccC-CCccEEEEcccccCCcCHHHHHHHHHH-hcCCCeEEEEEEE-----ecChhHHHHHHHHHhcCCeEEEec
Q 027594 137 HIKAVA-PPFDYIIGTDVVYAEHLLEPLLQTIFA-LSGPKTTILLGYE-----IRSTSVHEQMLQMWKSNFNVKLVP 206 (221)
Q Consensus 137 ~~~~~~-~~fD~Vi~~d~~y~~~~~~~l~~~~~~-ll~~~g~~~i~~~-----~r~~~~~~~~~~~~~~~f~v~~v~ 206 (221)
.++... .+||+|++... + .....++..+.+ +|+|||++++... .........+++.....|++....
T Consensus 144 ~l~~~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~ 217 (236)
T 2bm8_A 144 TFEHLREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIEDMIPYWYRYAPQLFSEYLGAFRDVLSMDMLY 217 (236)
T ss_dssp GGGGGSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECSCHHHHHHHCHHHHHHHHHTTTTTEEEETTT
T ss_pred HHHhhccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEeCcccccccCHHHHHHHHHhCcccEEEcchh
Confidence 122222 37999987654 2 367888999997 9999999988532 111122333444333367765433
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.8e-13 Score=105.59 Aligned_cols=107 Identities=11% Similarity=0.083 Sum_probs=72.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||||||+|..+..+++. +.+|+++|. +++++.+.++++.+... ...+++.+...|..+. +.
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~--------~~~~~v~~~~~d~~~l---~~ 95 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK--------GGLPNLLYLWATAERL---PP 95 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG--------TCCTTEEEEECCSTTC---CS
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh--------cCCCceEEEecchhhC---CC
Confidence 5779999999999999999988 678999998 56888655444332110 0024688888665443 22
Q ss_pred cCCCccEEEEccc---cc--CCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDV---VY--AEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~---~y--~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.... |.|...-+ .+ +..+...+++.+.++|+|||.+++...
T Consensus 96 ~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 141 (218)
T 3mq2_A 96 LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN 141 (218)
T ss_dssp CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence 2334 66652211 11 223347899999999999999998653
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.1e-12 Score=101.49 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=80.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCC-------EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEec
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGC-------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga-------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~ 133 (221)
..++.+|||+|||+|..+..+++... +|+++|. +++++.+++|+..++.... ...++.+...|..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~ 150 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL-------KIDNFKIIHKNIY 150 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGG-------SSTTEEEEECCGG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccc-------ccCCEEEEECChH
Confidence 34678999999999999999998754 8999998 6699999999988752000 0146788776654
Q ss_pred CCCCc-cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 134 NEDHI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 134 ~~~~~-~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..... .....+||+|+++.++.+ +++.+.++|+|||++++....
T Consensus 151 ~~~~~~~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 151 QVNEEEKKELGLFDAIHVGASASE------LPEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp GCCHHHHHHHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEEEEEE
T ss_pred hcccccCccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEEEcc
Confidence 42100 022468999999877654 347788999999999988765
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.35 E-value=6e-12 Score=100.79 Aligned_cols=106 Identities=15% Similarity=0.043 Sum_probs=70.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+|.+|||+|||+|..+..+|.. + .+|+++|. +.+++.+.+.++.. .++.+...|-.....
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--------------~nv~~i~~Da~~~~~ 139 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--------------PNIFPLLADARFPQS 139 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--------------TTEEEEECCTTCGGG
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------------CCeEEEEcccccchh
Confidence 457899999999999999999865 3 48999998 55775554443321 357777655433221
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.....++||+|+++-+. ......+...+.++|+|||+++++.+.
T Consensus 140 ~~~~~~~~D~I~~d~a~--~~~~~il~~~~~~~LkpGG~lvisik~ 183 (232)
T 3id6_C 140 YKSVVENVDVLYVDIAQ--PDQTDIAIYNAKFFLKVNGDMLLVIKA 183 (232)
T ss_dssp TTTTCCCEEEEEECCCC--TTHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred hhccccceEEEEecCCC--hhHHHHHHHHHHHhCCCCeEEEEEEcc
Confidence 11224689999986332 333344556667799999999987543
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.8e-13 Score=115.24 Aligned_cols=102 Identities=12% Similarity=0.148 Sum_probs=78.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEec--CCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG--NEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~--~~~~~~ 139 (221)
.++.+|||+|||+|..+..++..|.+|+++|. +.+++.++++ +. ......+. ....++
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~---------------~~~~~~~~~~~~~~l~ 166 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GI---------------RVRTDFFEKATADDVR 166 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TC---------------CEECSCCSHHHHHHHH
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CC---------------CcceeeechhhHhhcc
Confidence 46789999999999999999999999999998 5588888765 22 11110000 001112
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...++||+|+++.++++..+...+++.+.++|+|||.+++..+.
T Consensus 167 ~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 167 RTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 23578999999999999999999999999999999999987653
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=102.78 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=80.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
++++|||||||+|..++.+++. +.+|+++|. +++++.+++|++.++. .+++++...|..+... .
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~l~~l 138 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----------EHKINFIESDAMLALDNL 138 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence 5679999999999999999876 678999998 6699999999998775 3568888765543211 1
Q ss_pred cc---cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 KA---VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 ~~---~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.. ..++||+|++.. .......+++.+.++|+|||.+++..
T Consensus 139 ~~~~~~~~~fD~I~~d~---~~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 139 LQGQESEGSYDFGFVDA---DKPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp HHSTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HhccCCCCCcCEEEECC---chHHHHHHHHHHHHhcCCCeEEEEec
Confidence 00 146899999762 34567889999999999999987743
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=7e-13 Score=119.35 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=76.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||||||+|+++..+|++|++||++|. +.+++.|+..+..++. -++.+...+..+... ....
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~------------~~~~~~~~~~~~~~~-~~~~ 132 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD------------FAAEFRVGRIEEVIA-ALEE 132 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT------------SEEEEEECCHHHHHH-HCCT
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC------------CceEEEECCHHHHhh-hccC
Confidence 5679999999999999999999999999998 5699999999887753 357777644432211 1235
Q ss_pred CCccEEEEcccccCCcCHHHHHH--HHHHhcCCCeEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQ--TIFALSGPKTTILLGY 181 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~--~~~~ll~~~g~~~i~~ 181 (221)
++||+|++..+++|..+...+.. .+.+.+++++..++..
T Consensus 133 ~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~ 173 (569)
T 4azs_A 133 GEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILE 173 (569)
T ss_dssp TSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred CCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence 68999999999998655443322 2344466666655543
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-11 Score=96.36 Aligned_cols=134 Identities=16% Similarity=0.232 Sum_probs=88.0
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
++..|.+.+.+. ....++.+|||||||+|..+..+++.+++|+++|+.++. .
T Consensus 9 a~~KL~ei~~~~-------~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~----------~----------- 60 (191)
T 3dou_A 9 AAFKLEFLLDRY-------RVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME----------E----------- 60 (191)
T ss_dssp HHHHHHHHHHHH-------CCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC----------C-----------
T ss_pred HHHHHHHHHHHc-------CCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc----------c-----------
Confidence 566666666554 223468899999999999999999888899999985420 1
Q ss_pred CCCceEEEEEEecCCCCcc----ccC----CCccEEEEcccccCC-----------cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 121 LLGSIQAVELDWGNEDHIK----AVA----PPFDYIIGTDVVYAE-----------HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~----~~~----~~fD~Vi~~d~~y~~-----------~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..++++...|..+..... ... ++||+|+++...... .....++..+.++|+|||.+++..
T Consensus 61 -~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~ 139 (191)
T 3dou_A 61 -IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ 139 (191)
T ss_dssp -CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 135788886665432110 001 489999986432211 123466777889999999988755
Q ss_pred EecChhHHHHHHHHHhcCCeEEEe
Q 027594 182 EIRSTSVHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 182 ~~r~~~~~~~~~~~~~~~f~v~~v 205 (221)
..... ...+...++..|.-..+
T Consensus 140 ~~~~~--~~~~~~~l~~~F~~v~~ 161 (191)
T 3dou_A 140 FQGDM--TNDFIAIWRKNFSSYKI 161 (191)
T ss_dssp ECSTH--HHHHHHHHGGGEEEEEE
T ss_pred cCCCC--HHHHHHHHHHhcCEEEE
Confidence 43322 35667777777754333
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=5e-12 Score=101.53 Aligned_cols=127 Identities=8% Similarity=-0.012 Sum_probs=83.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++.+|||||||+|..++.+|+. +..|+++|+ +.+++.+++++........ ....++.+...|.........
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~------~~~~nv~~~~~d~~~~l~~~~ 119 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPA------GGFQNIACLRSNAMKHLPNFF 119 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTT------CCCTTEEEEECCTTTCHHHHC
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHh------cCCCeEEEEECcHHHhhhhhC
Confidence 5568999999999999999987 457999998 5699999998765211000 012568888865543111013
Q ss_pred cCCCccEEEEcccccCC--c------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc
Q 027594 141 VAPPFDYIIGTDVVYAE--H------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 198 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~--~------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~ 198 (221)
...+||.|+.+-+-.+. . ....+++.+.++|+|||.+++.... ........+.+.+
T Consensus 120 ~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~--~~~~~~~~~~l~~ 183 (235)
T 3ckk_A 120 YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV--LELHDWMCTHFEE 183 (235)
T ss_dssp CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESC--HHHHHHHHHHHHT
T ss_pred CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC--HHHHHHHHHHHHH
Confidence 35789999875221111 0 1257999999999999999886543 2333444455543
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-12 Score=102.34 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=79.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC-Cc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~-~~ 138 (221)
++++|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.++. .+++.+...+..+.. ..
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~~d~~~~l~~l 140 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----------AEKISLRLGPALATLEQL 140 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence 5679999999999999999975 568999998 6699999999998775 346787775543211 11
Q ss_pred cccC--CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 KAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 ~~~~--~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.... ++||+|++... ......+++.+.++|+|||.+++..
T Consensus 141 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~ 182 (232)
T 3cbg_A 141 TQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDN 182 (232)
T ss_dssp HTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred HhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 1112 68999997643 4567889999999999999998754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-12 Score=107.29 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=77.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||+|||+|..+..+++.. .+++++|.+.++. +++++..+. .+++++...|.. ...
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~-----------~~~v~~~~~d~~--~~~--- 245 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDV-----------AGRWKVVEGDFL--REV--- 245 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGG-----------TTSEEEEECCTT--TCC---
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCC-----------CCCeEEEecCCC--CCC---
Confidence 56799999999999999998864 4688999876554 333333332 357888886654 112
Q ss_pred CCCccEEEEcccccCCcCH--HHHHHHHHHhcCCCeEEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLL--EPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~--~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+ +||+|+++.++++.++. ..+++.+.++|+|||++++...
T Consensus 246 p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~ 287 (348)
T 3lst_A 246 P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDA 287 (348)
T ss_dssp C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEEC
T ss_pred C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 2 89999999999987765 6999999999999999998764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-12 Score=102.61 Aligned_cols=102 Identities=14% Similarity=0.048 Sum_probs=69.3
Q ss_pred CCCeEEEeCCCccHHHHHHHH--hCCEEEEecch-h-hHHHH---HHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQI-E-VLPLL---KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~--~ga~v~~~D~~-~-~l~~~---~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
++.+|||||||+|..++.+++ .+++|+++|.+ + +++.+ ++++..++. .++.+...|.....
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------------~~v~~~~~d~~~l~ 91 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL------------SNVVFVIAAAESLP 91 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------------SSEEEECCBTTBCC
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------------CCeEEEEcCHHHhh
Confidence 567999999999999999984 46789999985 5 66666 777666553 46777775554331
Q ss_pred CccccCCCccEEEEcccccC-----CcCHHHHHHHHHHhcCCCeEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYA-----EHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~-----~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
. .....+|.|.++.+... ......+++.+.++|+|||.+++
T Consensus 92 ~--~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 92 F--ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp G--GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred h--hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 1 11234555554432111 11235688999999999999988
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.8e-11 Score=94.21 Aligned_cols=95 Identities=22% Similarity=0.242 Sum_probs=69.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||+|||+|..++.+++.++ +|+++|. +.+++.+++|+. ++++...|..+.
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----------------~~~~~~~d~~~~----- 107 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------------GVNFMVADVSEI----- 107 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCGGGC-----
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------------CCEEEECcHHHC-----
Confidence 4678999999999999999998876 6999998 569999998765 246666554432
Q ss_pred cCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.++||+|++++++++... ...+++.+.+++ |.++++...
T Consensus 108 -~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~ 148 (200)
T 1ne2_A 108 -SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGNA 148 (200)
T ss_dssp -CCCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEEG
T ss_pred -CCCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEcC
Confidence 268999999999877543 346777777777 556665543
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.4e-12 Score=105.35 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=94.1
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhcccc
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQ 114 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~ 114 (221)
.+-+++..|.+.+... ....++++|||+|||||.++..+++.|+ +|+++|. +.|++.+.++ +
T Consensus 65 yvsrg~~Kl~~~l~~~-------~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~------ 128 (291)
T 3hp7_A 65 YVSRGGLKLEKALAVF-------NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D------ 128 (291)
T ss_dssp SSSTTHHHHHHHHHHT-------TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C------
T ss_pred cccchHHHHHHHHHhc-------CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C------
Confidence 3455677888888655 3455788999999999999999998886 7999998 5588774432 1
Q ss_pred CCCCCCCCCceEEE-EEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe----------
Q 027594 115 MNPGSDLLGSIQAV-ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI---------- 183 (221)
Q Consensus 115 ~~~~~~~~~~v~~~-~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~---------- 183 (221)
.++... ..+.........+..+||+|++. ..+. ++..++..+.++|+|||.+++..+.
T Consensus 129 --------~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d-~sf~--sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~ 197 (291)
T 3hp7_A 129 --------DRVRSMEQYNFRYAEPVDFTEGLPSFASID-VSFI--SLNLILPALAKILVDGGQVVALVKPQFEAGREQIG 197 (291)
T ss_dssp --------TTEEEECSCCGGGCCGGGCTTCCCSEEEEC-CSSS--CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC
T ss_pred --------cccceecccCceecchhhCCCCCCCEEEEE-eeHh--hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcC
Confidence 112111 10111111111123359999875 4333 4688999999999999999886321
Q ss_pred -----cChh----HHHHHHHHH-hcCCeEEEecCCCC
Q 027594 184 -----RSTS----VHEQMLQMW-KSNFNVKLVPKAKE 210 (221)
Q Consensus 184 -----r~~~----~~~~~~~~~-~~~f~v~~v~~~~~ 210 (221)
|.+. ..+.+.+.+ ..+|.+..+....+
T Consensus 198 ~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi 234 (291)
T 3hp7_A 198 KNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPI 234 (291)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSS
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Confidence 1111 223444444 35899887776655
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-11 Score=93.61 Aligned_cols=131 Identities=12% Similarity=0.070 Sum_probs=82.8
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh----CCEEEEecchhhHHHHHHHHHHhhhccccCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL----GCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~----ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
++..|.+.+.+. ....++.+|||||||+|..++.+++. +++|+++|.+++. .
T Consensus 6 ~~~kl~~~~~~~-------~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~------- 61 (201)
T 2plw_A 6 AAYKLIELDNKY-------LFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------P------- 61 (201)
T ss_dssp THHHHHHHHHHH-------CCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------C-------
T ss_pred HHHHHHHHHHHc-------CCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------C-------
Confidence 455666655543 12346789999999999999999876 3679999985531 0
Q ss_pred CCCCCCCceEEEEEEecCCCC----------------c------cccCCCccEEEEcccccCCc----CH-------HHH
Q 027594 117 PGSDLLGSIQAVELDWGNEDH----------------I------KAVAPPFDYIIGTDVVYAEH----LL-------EPL 163 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~----------------~------~~~~~~fD~Vi~~d~~y~~~----~~-------~~l 163 (221)
..++.+...|+.+... . .....+||+|+++.+++... +. ..+
T Consensus 62 -----~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~ 136 (201)
T 2plw_A 62 -----IPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSI 136 (201)
T ss_dssp -----CTTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHH
T ss_pred -----CCCceEEEccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHH
Confidence 1245666655543320 0 02346899999876654421 11 237
Q ss_pred HHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeE
Q 027594 164 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV 202 (221)
Q Consensus 164 ~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v 202 (221)
++.+.++|+|||.+++....... ...+...++..|..
T Consensus 137 l~~~~~~LkpgG~lv~~~~~~~~--~~~l~~~l~~~f~~ 173 (201)
T 2plw_A 137 THFMEQYINIGGTYIVKMYLGSQ--TNNLKTYLKGMFQL 173 (201)
T ss_dssp HHHHHHHEEEEEEEEEEEECSTT--HHHHHHHHHTTEEE
T ss_pred HHHHHHHccCCCEEEEEEeCCCC--HHHHHHHHHHHHhe
Confidence 78889999999999875443222 34555666666644
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-11 Score=104.61 Aligned_cols=148 Identities=12% Similarity=0.109 Sum_probs=102.8
Q ss_pred eEEEEEcCeEEEEeeCCCCCcccceecch-------HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027594 13 VINLEVLGHQLQFSQDPNSKHLGTTVWDA-------SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~~-------~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ 85 (221)
.|.+.+.....++..+........+-|+. ...||..|.... ...++..|||.+||+|.+.+.+|..
T Consensus 150 ~i~v~l~~~~~~~~ld~sg~~L~krgyr~~~~~Apl~e~lAa~ll~l~-------~~~~~~~vlDp~CGSGt~~ieaa~~ 222 (393)
T 3k0b_A 150 KLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLT-------SWHPDRPFYDPVCGSGTIPIEAALI 222 (393)
T ss_dssp CEEEEEETTEEEEEEESSSSCTTCCSTTTTSCSCSCCHHHHHHHHHHS-------CCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred EEEEEEECCEEEEEEecCCCcccccccccCCCCCCCcHHHHHHHHHHh-------CCCCCCeEEEcCCCCCHHHHHHHHH
Confidence 46677778888888775433222233431 234555554442 3346779999999999999999876
Q ss_pred CC----------------------------------------EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCc
Q 027594 86 GC----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS 124 (221)
Q Consensus 86 ga----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (221)
++ +|+++|+ +.+++.+++|++.+++ .++
T Consensus 223 ~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl-----------~~~ 291 (393)
T 3k0b_A 223 GQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGL-----------GDL 291 (393)
T ss_dssp HTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTC-----------TTC
T ss_pred hcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCC-----------CCc
Confidence 43 4999998 5699999999999886 356
Q ss_pred eEEEEEEecCCCCccccCCCccEEEEcccccCC----cCHHHHHHHHHHhcCC--CeEEEEEEE
Q 027594 125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGP--KTTILLGYE 182 (221)
Q Consensus 125 v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~----~~~~~l~~~~~~ll~~--~g~~~i~~~ 182 (221)
+++...|+.+... ..+||+|++++|+... ..+..+.+.+.+.+++ |+.+++...
T Consensus 292 I~~~~~D~~~~~~----~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 292 ITFRQLQVADFQT----EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp SEEEECCGGGCCC----CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred eEEEECChHhCCC----CCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 8888866654421 3589999999886432 3455666666666664 888887655
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.8e-11 Score=103.90 Aligned_cols=148 Identities=14% Similarity=0.067 Sum_probs=103.1
Q ss_pred eEEEEEcCeEEEEeeCCCCCcccceecch-------HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027594 13 VINLEVLGHQLQFSQDPNSKHLGTTVWDA-------SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~~-------~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ 85 (221)
.+.+.+....+++..+......-.+-|+. ...|+..|.... ...++.+|||+|||+|.+.+.+|..
T Consensus 144 ~i~~~i~~~~~~~~lD~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~~-------~~~~~~~vlDp~CGSGt~lieaa~~ 216 (385)
T 3ldu_A 144 PIFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYLT-------PWKAGRVLVDPMCGSGTILIEAAMI 216 (385)
T ss_dssp CEEEEEETTEEEEEEESCCSCTTCCSCCCC--CCCCCHHHHHHHHHTS-------CCCTTSCEEETTCTTCHHHHHHHHH
T ss_pred EEEEEEECCEEEEEEecCCChhhhcccccCCCCCCCcHHHHHHHHHhh-------CCCCCCeEEEcCCCCCHHHHHHHHH
Confidence 46777777778887775322211122221 234666665542 3346789999999999999999876
Q ss_pred C----------------------------------------CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCc
Q 027594 86 G----------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS 124 (221)
Q Consensus 86 g----------------------------------------a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (221)
+ .+|+++|+ +.+++.+++|+..+++ .+.
T Consensus 217 ~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl-----------~~~ 285 (385)
T 3ldu_A 217 GINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGV-----------DEY 285 (385)
T ss_dssp HTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTC-----------GGG
T ss_pred HhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCC-----------CCc
Confidence 4 35999998 5699999999999986 346
Q ss_pred eEEEEEEecCCCCccccCCCccEEEEcccccC----CcCHHHHHHHHHHhcCC--CeEEEEEEE
Q 027594 125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGP--KTTILLGYE 182 (221)
Q Consensus 125 v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~----~~~~~~l~~~~~~ll~~--~g~~~i~~~ 182 (221)
+++...|..+.. ...+||+|++++++.. ...+..+.+.+.+.|++ |+.+++...
T Consensus 286 i~~~~~D~~~l~----~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 286 IEFNVGDATQFK----SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp EEEEECCGGGCC----CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred eEEEECChhhcC----cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 888886665432 1358999999999543 23456677777777765 888877654
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-11 Score=102.10 Aligned_cols=148 Identities=10% Similarity=0.077 Sum_probs=103.8
Q ss_pred eEEEEEcCeEEEEeeCCCCCcccceecch-------HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027594 13 VINLEVLGHQLQFSQDPNSKHLGTTVWDA-------SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~~-------~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ 85 (221)
.|.+.+.....++..+........+-|+. ...||..|.... ...++..+||.+||+|.+.+.+|..
T Consensus 143 ~i~v~~~~~~~~~~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l~-------~~~~~~~llDp~CGSGt~lIEAa~~ 215 (384)
T 3ldg_A 143 KIEISLLKDQARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLS-------NWFPDKPFVDPTCGSGTFCIEAAMI 215 (384)
T ss_dssp EEEEEEETTEEEEEEESSSSCTTCCSCCCC---CCCCHHHHHHHHHHT-------TCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred EEEEEEECCEEEEEEeccCCcccccCcccCCCCCCCcHHHHHHHHHHh-------CCCCCCeEEEeCCcCCHHHHHHHHH
Confidence 46677778888887775332222222221 235666655442 3346789999999999999999875
Q ss_pred CC----------------------------------------EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCc
Q 027594 86 GC----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS 124 (221)
Q Consensus 86 ga----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (221)
++ +|+++|+ +.|++.+++|++.+++ .+.
T Consensus 216 a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl-----------~~~ 284 (384)
T 3ldg_A 216 GMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGL-----------EDV 284 (384)
T ss_dssp HTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTC-----------TTT
T ss_pred hcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCC-----------CCc
Confidence 43 4999998 5699999999999986 456
Q ss_pred eEEEEEEecCCCCccccCCCccEEEEcccccC----CcCHHHHHHHHHHhcCC--CeEEEEEEE
Q 027594 125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALSGP--KTTILLGYE 182 (221)
Q Consensus 125 v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~----~~~~~~l~~~~~~ll~~--~g~~~i~~~ 182 (221)
+++...|..+.. . ..+||+|++++|+.. ...+..+.+.+.+.+++ |+.+++...
T Consensus 285 I~~~~~D~~~l~---~-~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 285 VKLKQMRLQDFK---T-NKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp EEEEECCGGGCC---C-CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred eEEEECChHHCC---c-cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 888886665432 1 358999999998653 23466777777777775 888888665
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.31 E-value=8.5e-12 Score=102.39 Aligned_cols=106 Identities=10% Similarity=0.029 Sum_probs=82.1
Q ss_pred CCeEEEeCCCc---cHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 65 GKRVIELGAGC---GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 65 ~~~vLelGcG~---G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..+|||||||+ |.....+++. +++|+++|. +.|++.+++++..+ ++++++..|..+....
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--------------~~v~~~~~D~~~~~~~ 143 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--------------PNTAVFTADVRDPEYI 143 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--------------TTEEEEECCTTCHHHH
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--------------CCeEEEEeeCCCchhh
Confidence 46999999999 9887766654 678999998 66999999887432 4678888665432110
Q ss_pred --------cccCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 139 --------KAVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 139 --------~~~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
.....+||+|+++.++++..+ ...+++.+.++|+|||.+++.....
T Consensus 144 ~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 144 LNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred hccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 011247999999999998654 8999999999999999999988765
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.9e-12 Score=104.84 Aligned_cols=126 Identities=16% Similarity=0.116 Sum_probs=88.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHH--hhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++|||||||+|..+..+++. +.+|+++|+ +++++.+++|+.. ++.. .+++++...|+... .
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~----------~~~v~~~~~D~~~~--l 183 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE----------DKRVNVFIEDASKF--L 183 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG----------STTEEEEESCHHHH--H
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC----------CCcEEEEEccHHHH--H
Confidence 4579999999999999999976 468999998 5699999998775 2220 25688887665332 1
Q ss_pred cccCCCccEEEEccc--ccCCcCH--HHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHhcCCe
Q 027594 139 KAVAPPFDYIIGTDV--VYAEHLL--EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN 201 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~--~y~~~~~--~~l~~~~~~ll~~~g~~~i~~~~r--~~~~~~~~~~~~~~~f~ 201 (221)
....++||+|+++.. +...... ..+++.+.++|+|||.+++..... .......+.+.+++.|.
T Consensus 184 ~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~ 252 (321)
T 2pt6_A 184 ENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFK 252 (321)
T ss_dssp HHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCS
T ss_pred hhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCC
Confidence 112568999998642 1111111 789999999999999998865432 22345566666666663
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-11 Score=103.01 Aligned_cols=132 Identities=16% Similarity=0.030 Sum_probs=87.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++++|||||||+|..+..+++. ..+|+++|+ +.+++.+++++....... ...++++...|...... ..
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~--------~~~~v~~~~~D~~~~~~-~~ 165 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSL--------ADPRATVRVGDGLAFVR-QT 165 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHHHH-SS
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhccc--------CCCcEEEEECcHHHHHH-hc
Confidence 5679999999999999999976 458999998 569999999875321100 03568888765543211 00
Q ss_pred cCCCccEEEEcccccCCcC--H--HHHHHHHHHhcCCCeEEEEEEEecC--hhHHHHHHHHHhc-CCeEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHL--L--EPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKS-NFNVKL 204 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~--~--~~l~~~~~~ll~~~g~~~i~~~~r~--~~~~~~~~~~~~~-~f~v~~ 204 (221)
..++||+|+++.+...... + ..+++.+.++|+|||.+++...... ....+.+.+.+++ +|....
T Consensus 166 ~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~ 236 (304)
T 3bwc_A 166 PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQ 236 (304)
T ss_dssp CTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEE
T ss_pred cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEE
Confidence 2568999998655433221 1 6889999999999999988654321 2234556666655 585433
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=9e-12 Score=97.95 Aligned_cols=111 Identities=10% Similarity=0.022 Sum_probs=80.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
.++.+|||+|||+|..+..+ +.+|+++|.+.. + +.+...|..+ .+...
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----------~----------------~~~~~~d~~~---~~~~~ 113 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSI---RNPVHCFDLASL----------D----------------PRVTVCDMAQ---VPLED 113 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----------S----------------TTEEESCTTS---CSCCT
T ss_pred CCCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----------C----------------ceEEEecccc---CCCCC
Confidence 35679999999999988777 378999997443 1 2334433322 33345
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEec
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~ 206 (221)
++||+|+++.++++ .....+++.+.++|+|||.+++..........+.+.+.++ .+|++..+.
T Consensus 114 ~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 114 ESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp TCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEE
T ss_pred CCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEe
Confidence 78999999999874 7889999999999999999999765543223455666664 488876654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=6.9e-12 Score=99.41 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=78.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..+..+++. + .+|+++|. +.+++.+++|+..++.... ..+++.+...|....
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~-- 145 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL-------SSGRVQLVVGDGRMG-- 145 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH-------HTSSEEEEESCGGGC--
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc-------CCCcEEEEECCcccC--
Confidence 346789999999999999999876 4 58999998 5699999999987642000 014677777665432
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.....+||+|+++.++.+ +++.+.++|+|||.+++....
T Consensus 146 -~~~~~~fD~i~~~~~~~~------~~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 146 -YAEEAPYDAIHVGAAAPV------VPQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp -CGGGCCEEEEEECSBBSS------CCHHHHHTEEEEEEEEEEESC
T ss_pred -cccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEEEec
Confidence 122468999998877643 346788999999999987654
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=98.18 Aligned_cols=106 Identities=13% Similarity=0.153 Sum_probs=78.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C-------CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEe
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-G-------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 132 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-g-------a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw 132 (221)
..++.+|||+|||+|..+..+++. + .+|+++|. +++++.+++|+..++.... ...++.+...|.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~ 154 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML-------DSGQLLIVEGDG 154 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH-------HHTSEEEEESCG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcccc-------CCCceEEEECCc
Confidence 346789999999999999999874 4 48999998 6699999999987651000 004677777665
Q ss_pred cCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 133 GNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 133 ~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
... . ....+||+|+++.++.+. .+.+.++|+|||++++....
T Consensus 155 ~~~--~-~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 155 RKG--Y-PPNAPYNAIHVGAAAPDT------PTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp GGC--C-GGGCSEEEEEECSCBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred ccC--C-CcCCCccEEEECCchHHH------HHHHHHHhcCCCEEEEEEec
Confidence 442 1 113689999998877653 36788999999999887653
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-11 Score=100.79 Aligned_cols=114 Identities=14% Similarity=0.112 Sum_probs=75.6
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.+++. | .+|+++|. +++++.+++|++..+.... .+.......++++...|..+...
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-ln~~~~~~~~v~~~~~d~~~~~~ 181 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK-LSHVEEWPDNVDFIHKDISGATE 181 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHT-TTCSSCCCCCEEEEESCTTCCC-
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccc-cccccccCCceEEEECChHHccc
Confidence 347889999999999999999986 5 67999998 6699999999986430000 00000002467877755543210
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.....+||+|+++.+- ...++..+.++|+|||.+++...
T Consensus 182 -~~~~~~fD~V~~~~~~-----~~~~l~~~~~~LkpgG~lv~~~~ 220 (336)
T 2b25_A 182 -DIKSLTFDAVALDMLN-----PHVTLPVFYPHLKHGGVCAVYVV 220 (336)
T ss_dssp -------EEEEEECSSS-----TTTTHHHHGGGEEEEEEEEEEES
T ss_pred -ccCCCCeeEEEECCCC-----HHHHHHHHHHhcCCCcEEEEEeC
Confidence 1234579999986432 22378889999999999987654
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-11 Score=107.70 Aligned_cols=140 Identities=12% Similarity=0.114 Sum_probs=94.3
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM 115 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~ 115 (221)
.++.+++..+. ..++.+|||+|||+|..++.+|.+ +.+|+++|+ +.+++.+++|++.+++
T Consensus 92 ~ss~l~~~~L~-----------~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~----- 155 (456)
T 3m4x_A 92 PSAMIVGTAAA-----------AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV----- 155 (456)
T ss_dssp TTTHHHHHHHC-----------CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHcC-----------CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----
Confidence 34566666553 236789999999999999998865 358999998 5699999999999986
Q ss_pred CCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC------c----------------CHHHHHHHHHHhcCC
Q 027594 116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE------H----------------LLEPLLQTIFALSGP 173 (221)
Q Consensus 116 ~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~------~----------------~~~~l~~~~~~ll~~ 173 (221)
.++.+...|..... .....+||+|+++.+.... . ....++..+.++|+|
T Consensus 156 -------~nv~v~~~Da~~l~--~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp 226 (456)
T 3m4x_A 156 -------SNAIVTNHAPAELV--PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN 226 (456)
T ss_dssp -------SSEEEECCCHHHHH--HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE
T ss_pred -------CceEEEeCCHHHhh--hhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45776664432221 1125689999987663211 1 123678888899999
Q ss_pred CeEEEEEEEecChh----HHHHHHHHHhcCCeEEEec
Q 027594 174 KTTILLGYEIRSTS----VHEQMLQMWKSNFNVKLVP 206 (221)
Q Consensus 174 ~g~~~i~~~~r~~~----~~~~~~~~~~~~f~v~~v~ 206 (221)
||+++.+...-.+. +...|++.. .|++..+.
T Consensus 227 GG~LvYsTCs~~~eEne~vv~~~l~~~--~~~l~~~~ 261 (456)
T 3m4x_A 227 KGQLIYSTCTFAPEENEEIISWLVENY--PVTIEEIP 261 (456)
T ss_dssp EEEEEEEESCCCGGGTHHHHHHHHHHS--SEEEECCC
T ss_pred CcEEEEEEeecccccCHHHHHHHHHhC--CCEEEecc
Confidence 99988766544332 334444332 36665553
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.7e-11 Score=105.18 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=78.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||+|||+|..++.+|.+ +.+|+++|+ +.+++.+++|++.++. .++.+...|... ..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------------~nv~~~~~D~~~---~~ 181 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------------SNVALTHFDGRV---FG 181 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------------CSEEEECCCSTT---HH
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCCHHH---hh
Confidence 6789999999999999999875 368999998 5699999999999875 457776644322 22
Q ss_pred c-cCCCccEEEEcccccC------CcC----------------HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 A-VAPPFDYIIGTDVVYA------EHL----------------LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~-~~~~fD~Vi~~d~~y~------~~~----------------~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
. ...+||.|++..+... ..+ ...++..+.++|+|||+++++...
T Consensus 182 ~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 1 3468999998654321 111 246788888999999998886543
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=101.19 Aligned_cols=128 Identities=16% Similarity=0.069 Sum_probs=87.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhc-cccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSR-ISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~-~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++|||||||+|..+..+++. +.+|+++|+ +.+++.+++++...... . ..+++++...|.... +.
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~--------~~~~v~~~~~D~~~~--l~ 146 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF--------DDPRAVLVIDDARAY--LE 146 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG--------GCTTEEEEESCHHHH--HH
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccc--------cCCceEEEEchHHHH--HH
Confidence 4579999999999999999976 468999998 56999999987642100 0 024688877554332 12
Q ss_pred ccCCCccEEEEcccccC---C--cC--HHHHHHHHHHhcCCCeEEEEEEEecC---hhHHHHHHHHHhcCCe
Q 027594 140 AVAPPFDYIIGTDVVYA---E--HL--LEPLLQTIFALSGPKTTILLGYEIRS---TSVHEQMLQMWKSNFN 201 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~---~--~~--~~~l~~~~~~ll~~~g~~~i~~~~r~---~~~~~~~~~~~~~~f~ 201 (221)
...++||+|+++.+... . .. ...+++.+.++|+|||.+++...... ........+.+++.|.
T Consensus 147 ~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~ 218 (314)
T 1uir_A 147 RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR 218 (314)
T ss_dssp HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCS
T ss_pred hcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCC
Confidence 23568999998644332 1 11 37889999999999999888644322 3345556666666663
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.6e-11 Score=97.71 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=73.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||+|||+|..+..+++. +.+|+++|. +.+++.++++. .++.+...|+.. .+
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~---~~ 143 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------------PQVTFCVASSHR---LP 143 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTS---CS
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEcchhh---CC
Confidence 36789999999999999999886 789999998 55888887653 235666654432 33
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
...++||+|+++.+ ...++.+.++|+|||.+++......
T Consensus 144 ~~~~~fD~v~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 144 FSDTSMDAIIRIYA-------PCKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp BCTTCEEEEEEESC-------CCCHHHHHHHEEEEEEEEEEEECTT
T ss_pred CCCCceeEEEEeCC-------hhhHHHHHHhcCCCcEEEEEEcCHH
Confidence 34578999998755 2347888999999999998876543
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.5e-11 Score=98.10 Aligned_cols=129 Identities=11% Similarity=0.004 Sum_probs=87.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++++|||||||+|..+..+++. + .+|+++|+ +++++.+++|+....... ..+++++...|.... +..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~--------~~~rv~v~~~D~~~~--l~~ 144 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL--------DDPRVDVQVDDGFMH--IAK 144 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT--------TSTTEEEEESCSHHH--HHT
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc--------CCCceEEEECcHHHH--Hhh
Confidence 4679999999999999999987 4 58999998 669999999886531100 135788877543221 112
Q ss_pred cCCCccEEEEcccccCCc----CHHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHhcCCeE
Q 027594 141 VAPPFDYIIGTDVVYAEH----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFNV 202 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~----~~~~l~~~~~~ll~~~g~~~i~~~~--r~~~~~~~~~~~~~~~f~v 202 (221)
..++||+|++..+..... ....+++.+.++|+|||.+++.... ..........+.+++.|..
T Consensus 145 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~ 212 (275)
T 1iy9_A 145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPI 212 (275)
T ss_dssp CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCC
Confidence 356899999854321111 1267899999999999998875432 2233345556666666643
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.9e-11 Score=93.49 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=72.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C----------CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEE-E
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-G----------CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-E 129 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-g----------a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~-~ 129 (221)
..++.+|||||||+|..++.+++. + .+|+++|.+++. . ..++++. .
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~------------~~~~~~~~~ 77 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------P------------LEGATFLCP 77 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------C------------CTTCEEECS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------c------------CCCCeEEEe
Confidence 346789999999999999999976 4 689999985521 0 1234555 4
Q ss_pred EEecCCCCc-----cccCCCccEEEEcccccCCc----CH-------HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHH
Q 027594 130 LDWGNEDHI-----KAVAPPFDYIIGTDVVYAEH----LL-------EPLLQTIFALSGPKTTILLGYEIRSTSVHEQML 193 (221)
Q Consensus 130 ~dw~~~~~~-----~~~~~~fD~Vi~~d~~y~~~----~~-------~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~ 193 (221)
.|+...... .....+||+|+++.++.... +. ..+++.+.++|+|||.+++....... ...+.
T Consensus 78 ~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~~~~~ 155 (196)
T 2nyu_A 78 ADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ--SRRLQ 155 (196)
T ss_dssp CCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG--GHHHH
T ss_pred ccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc--HHHHH
Confidence 333221100 01235899999875433211 11 47888899999999999886543322 23444
Q ss_pred HHHhcCC
Q 027594 194 QMWKSNF 200 (221)
Q Consensus 194 ~~~~~~f 200 (221)
..++..|
T Consensus 156 ~~l~~~f 162 (196)
T 2nyu_A 156 RRLTEEF 162 (196)
T ss_dssp HHHHHHE
T ss_pred HHHHHHh
Confidence 5444444
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=106.49 Aligned_cols=127 Identities=17% Similarity=0.136 Sum_probs=86.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||+|||+|..++.+|.+ ..+|+++|+ +.+++.+++|++.++. . +.+...|..... .
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~------------~-v~~~~~Da~~l~--~ 165 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA------------P-LAVTQAPPRALA--E 165 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC------------C-CEEECSCHHHHH--H
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------------e-EEEEECCHHHhh--h
Confidence 6789999999999999999865 258999998 5699999999999885 3 666654432221 1
Q ss_pred ccCCCccEEEEccccc------CCcC----------------HHHHHHHHHHhcCCCeEEEEEEEecChh----HHHHHH
Q 027594 140 AVAPPFDYIIGTDVVY------AEHL----------------LEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQML 193 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y------~~~~----------------~~~l~~~~~~ll~~~g~~~i~~~~r~~~----~~~~~~ 193 (221)
...++||+|+++.+.- ...+ ...++..+.++|+|||+++++...-... +.+.|+
T Consensus 166 ~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~~eEne~vv~~~l 245 (464)
T 3m6w_A 166 AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFL 245 (464)
T ss_dssp HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCchhcCHHHHHHHH
Confidence 1356899999865531 1111 2678888899999999988766543332 233333
Q ss_pred HHHhcCCeEEEec
Q 027594 194 QMWKSNFNVKLVP 206 (221)
Q Consensus 194 ~~~~~~f~v~~v~ 206 (221)
+.. ..|++..+.
T Consensus 246 ~~~-~~~~l~~~~ 257 (464)
T 3m6w_A 246 KAH-PEFRLEDAR 257 (464)
T ss_dssp HHC-TTEEEECCC
T ss_pred HHC-CCcEEEecc
Confidence 321 246665543
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.5e-11 Score=100.67 Aligned_cols=125 Identities=13% Similarity=0.026 Sum_probs=83.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHH--hhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++|||||||+|..+..+++. ..+|+++|+ +.+++.+++|+.. ++.. .+++++...|.... .
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~----------~~~v~~~~~D~~~~--l 157 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD----------DPRAEIVIANGAEY--V 157 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG----------CTTEEEEESCHHHH--G
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC----------CCceEEEECcHHHH--H
Confidence 4579999999999999999986 358999998 5699999999865 2220 25688887654332 1
Q ss_pred cccCCCccEEEEcccccCCc-----CHHHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHhcCC
Q 027594 139 KAVAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNF 200 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~-----~~~~l~~~~~~ll~~~g~~~i~~~~r--~~~~~~~~~~~~~~~f 200 (221)
....++||+|+++.+-.... ....+++.+.++|+|||.+++..... .........+.+++.|
T Consensus 158 ~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F 226 (296)
T 1inl_A 158 RKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVF 226 (296)
T ss_dssp GGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHC
T ss_pred hhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHC
Confidence 12256899999753211011 23688999999999999988854331 2223344455555444
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=105.09 Aligned_cols=100 Identities=21% Similarity=0.136 Sum_probs=76.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHh---------------hhccccCCCCCCCCCce
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWN---------------TSRISQMNPGSDLLGSI 125 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~-~~~l~~~~~n~~~n---------------~~~~~~~~~~~~~~~~v 125 (221)
++.+|||+|||+|..++.+|+. + .+|+++|+ +++++.+++|++.| ++ .++
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------------~~i 114 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------------KTI 114 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------------SEE
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------------Cce
Confidence 5789999999999999999986 4 47999998 66999999999999 43 236
Q ss_pred EEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 126 QAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 126 ~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.+...|...... ....+||+|+. |+.+. ...++..+.++++++|.+++..
T Consensus 115 ~v~~~Da~~~~~--~~~~~fD~I~l-DP~~~---~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 115 VINHDDANRLMA--ERHRYFHFIDL-DPFGS---PMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp EEEESCHHHHHH--HSTTCEEEEEE-CCSSC---CHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEcCcHHHHHH--hccCCCCEEEe-CCCCC---HHHHHHHHHHhcCCCCEEEEEe
Confidence 776655433211 11357999995 55432 3678888899999999888865
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=101.36 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=61.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|..+..++..+++|+++|+ +.+++.+++++..++. .+++++...|..+..
T Consensus 26 ~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~D~~~~~---- 90 (285)
T 1zq9_A 26 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV-----------ASKLQVLVGDVLKTD---- 90 (285)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEESCTTTSC----
T ss_pred CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcceeccc----
Confidence 346789999999999999999999999999998 5699999998876543 246788875554321
Q ss_pred cCCCccEEEEcccccC
Q 027594 141 VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~ 156 (221)
...||+|+++.+++.
T Consensus 91 -~~~fD~vv~nlpy~~ 105 (285)
T 1zq9_A 91 -LPFFDTCVANLPYQI 105 (285)
T ss_dssp -CCCCSEEEEECCGGG
T ss_pred -chhhcEEEEecCccc
Confidence 237999999877655
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=106.50 Aligned_cols=101 Identities=12% Similarity=0.124 Sum_probs=77.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCc-eEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS-IQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~-v~~~~~dw~~~~~~ 138 (221)
+|.+|||++||+|..|+.+|+. |+ +|+++|+ +++++.+++|++.|++ .++ +++...|..+..
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl-----------~~~~v~v~~~Da~~~l-- 118 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI-----------PEDRYEIHGMEANFFL-- 118 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC-----------CGGGEEEECSCHHHHH--
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCceEEEEeCCHHHHH--
Confidence 5689999999999999999985 54 6999998 6699999999999986 234 777764432211
Q ss_pred c-ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 ~-~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. ....+||+|+..+ |. ....++..+.++|++||.++++.
T Consensus 119 ~~~~~~~fD~V~lDP--~g--~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 119 RKEWGFGFDYVDLDP--FG--TPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp HSCCSSCEEEEEECC--SS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHhhCCCCcEEEECC--Cc--CHHHHHHHHHHHhCCCCEEEEEe
Confidence 1 1245799999865 43 33578888999999999888866
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.22 E-value=7.4e-11 Score=102.66 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=78.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||+|||+|..++.++..+ .+|+++|. +.+++.+++|+..++. ++.+...|...... .
T Consensus 245 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-------------~~~~~~~D~~~~~~-~ 310 (429)
T 1sqg_A 245 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-------------KATVKQGDGRYPSQ-W 310 (429)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-------------CCEEEECCTTCTHH-H
T ss_pred CCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-------------CeEEEeCchhhchh-h
Confidence 367899999999999999999875 58999998 5699999999998874 35666644433211 0
Q ss_pred ccCCCccEEEEcccccC------CcCH----------------HHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 AVAPPFDYIIGTDVVYA------EHLL----------------EPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~------~~~~----------------~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
....+||+|+++.+... ..+. ..++..+.++|+|||+++++...
T Consensus 311 ~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs 376 (429)
T 1sqg_A 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 376 (429)
T ss_dssp HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 22468999998655332 1111 47788889999999999887643
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3e-11 Score=99.08 Aligned_cols=116 Identities=20% Similarity=0.230 Sum_probs=77.3
Q ss_pred CCCeEEEeCCCccH----HHHHHHHh-C-----CEEEEecc-hhhHHHHHHHHHHhhh----cc----ccC---CCC-C-
Q 027594 64 KGKRVIELGAGCGV----AGFGMALL-G-----CNVITTDQ-IEVLPLLKRNVEWNTS----RI----SQM---NPG-S- 119 (221)
Q Consensus 64 ~~~~vLelGcG~G~----~~l~~a~~-g-----a~v~~~D~-~~~l~~~~~n~~~n~~----~~----~~~---~~~-~- 119 (221)
++.+|||+|||||- +++.++.. + .+|+++|+ ++|++.|++++..... +. ..+ ... .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35699999999997 66666654 3 58999998 5599999987521100 00 000 000 0
Q ss_pred ------CCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 120 ------DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 120 ------~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
....+|.+...|+.+.. .+ ..++||+|++..++.+. +....+++.+.+.|+|||.+++..
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~-~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~ 252 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQ-YN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 252 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSS-CC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred ceeechhhcccCeEEecccCCCC-CC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 00136888887775521 11 14689999998886543 345889999999999999998844
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.8e-11 Score=103.11 Aligned_cols=106 Identities=15% Similarity=0.031 Sum_probs=77.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHh--hhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++|||||||+|..+..+++. +.+|+++|+ +.+++.+++|+... ++. .+++++...|+.....
T Consensus 120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~----------~~rv~~~~~D~~~~l~- 188 (334)
T 1xj5_A 120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE----------DPRVNLVIGDGVAFLK- 188 (334)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG----------STTEEEEESCHHHHHH-
T ss_pred CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC----------CCcEEEEECCHHHHHH-
Confidence 4579999999999999999976 468999998 56999999998763 220 2478888866543210
Q ss_pred cccCCCccEEEEccc--ccCCcC--HHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDV--VYAEHL--LEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~--~y~~~~--~~~l~~~~~~ll~~~g~~~i~ 180 (221)
....++||+|+++.. ...... ...+++.+.++|+|||.+++.
T Consensus 189 ~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 189 NAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp TSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 012468999998543 222221 478999999999999998874
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.6e-11 Score=99.43 Aligned_cols=125 Identities=16% Similarity=0.060 Sum_probs=82.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHH--hhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++|||||||+|..+..+++.. .+|+++|+ +++++.+++|+.. +++. .+++++...|.... +
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~----------~~rv~v~~~Da~~~--l 162 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS----------SSKLTLHVGDGFEF--M 162 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG----------CTTEEEEESCHHHH--H
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC----------CCcEEEEECcHHHH--H
Confidence 56799999999999999999874 58999998 5699999999875 2220 25678777543221 1
Q ss_pred cccCCCccEEEEcccccCCc----CHHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHhcCC
Q 027594 139 KAVAPPFDYIIGTDVVYAEH----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF 200 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~----~~~~l~~~~~~ll~~~g~~~i~~~~--r~~~~~~~~~~~~~~~f 200 (221)
....++||+|++..+..... ....+++.+.++|+|||.+++.... ........+.+.+++.|
T Consensus 163 ~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f 230 (304)
T 2o07_A 163 KQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLF 230 (304)
T ss_dssp HTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHC
T ss_pred hhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhC
Confidence 12356899999854322111 1356899999999999998875533 22233344444444444
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-11 Score=100.15 Aligned_cols=128 Identities=16% Similarity=0.097 Sum_probs=87.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++++|||||||+|..+..+++. +.+|+++|+ +.+++.+++++..++... ..+++++...|.... ...
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~--------~~~~v~~~~~D~~~~--l~~ 147 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY--------EDKRVNVFIEDASKF--LEN 147 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG--------GSTTEEEEESCHHHH--HHH
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcccc--------CCCcEEEEECChHHH--HHh
Confidence 5679999999999999999876 358999998 569999999876532100 025678877554322 111
Q ss_pred cCCCccEEEEccccc--CCcCH--HHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHhcCCe
Q 027594 141 VAPPFDYIIGTDVVY--AEHLL--EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN 201 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y--~~~~~--~~l~~~~~~ll~~~g~~~i~~~~r--~~~~~~~~~~~~~~~f~ 201 (221)
..++||+|++..+.. ....+ ..+++.+.++|+|||.+++..... .......+.+.+++.|.
T Consensus 148 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~ 214 (283)
T 2i7c_A 148 VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFK 214 (283)
T ss_dssp CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCS
T ss_pred CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCC
Confidence 256899999843221 12222 689999999999999988754322 22334556666666664
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.9e-11 Score=98.76 Aligned_cols=131 Identities=18% Similarity=0.061 Sum_probs=83.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHh--hhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++++|||||||+|..+..+++.+ .+|+++|+ +++++.+++|+ .. ++.....+ ...+++++...|.... +.
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~---~~~~~v~~~~~D~~~~--l~ 148 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLN---GKHEKAKLTIGDGFEF--IK 148 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHT---TCCSSEEEEESCHHHH--HH
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhcccccccccc---CCCCcEEEEECchHHH--hc
Confidence 46799999999999999998875 47999998 56999999987 32 11000000 0135677777443221 11
Q ss_pred ccCCCccEEEEcccccCC--cC--HHHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHhcCCe
Q 027594 140 AVAPPFDYIIGTDVVYAE--HL--LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN 201 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~--~~--~~~l~~~~~~ll~~~g~~~i~~~~r--~~~~~~~~~~~~~~~f~ 201 (221)
. .++||+|++..+.... .. ...+++.+.++|+|||.+++..... .......+.+.+++.|.
T Consensus 149 ~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~ 215 (281)
T 1mjf_A 149 N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFD 215 (281)
T ss_dssp H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCS
T ss_pred c-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCC
Confidence 2 5689999986442211 11 3678999999999999988865432 23334445555554453
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-10 Score=101.05 Aligned_cols=109 Identities=18% Similarity=0.094 Sum_probs=79.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++.+|||+|||+|..++.++.. + .+|+++|. +.+++.+++|++.++. .++.+...|.......
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------------~~v~~~~~D~~~~~~~- 325 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------------KIVKPLVKDARKAPEI- 325 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCTTCCSSS-
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEEEcChhhcchh-
Confidence 6789999999999999999874 3 68999998 5699999999998875 4577776554333210
Q ss_pred ccCCCccEEEEcccccC------CcCH----------------HHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 140 AVAPPFDYIIGTDVVYA------EHLL----------------EPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~------~~~~----------------~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
....+||+|++..+... ..+. ..++..+.++|+|||.++++...-.
T Consensus 326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 22367999997544321 1111 5688889999999999988765443
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=98.71 Aligned_cols=103 Identities=21% Similarity=0.150 Sum_probs=82.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC--EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
..++|||||||+|..++.+++... +++..|.+++++.++++++... .++|++...|.-.. +
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~------------~~rv~~~~gD~~~~-----~ 241 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE------------EEQIDFQEGDFFKD-----P 241 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--------------CCSEEEEESCTTTS-----C
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc------------cCceeeecCccccC-----C
Confidence 456999999999999999998754 6888899999999988776543 36899988654322 2
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...+|+|++..++++.++ ...+++.+.+.|+|||+++|....
T Consensus 242 ~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~ 285 (353)
T 4a6d_A 242 LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESL 285 (353)
T ss_dssp CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence 346899999999998654 467899999999999999998753
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.19 E-value=9.9e-11 Score=97.19 Aligned_cols=78 Identities=21% Similarity=0.200 Sum_probs=59.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|..+..++..+.+|+++|+ +.+++.+++|+..++. +++++...|.....
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~------------~~v~~~~~D~~~~~---- 103 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY------------NNLEVYEGDAIKTV---- 103 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC------------CCEEC----CCSSC----
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC------------CceEEEECchhhCC----
Confidence 346789999999999999999999999999998 5699999999987653 46777776654332
Q ss_pred cCCCccEEEEcccccC
Q 027594 141 VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~ 156 (221)
..+||+|+++.+++.
T Consensus 104 -~~~~D~Vv~n~py~~ 118 (299)
T 2h1r_A 104 -FPKFDVCTANIPYKI 118 (299)
T ss_dssp -CCCCSEEEEECCGGG
T ss_pred -cccCCEEEEcCCccc
Confidence 347999999877554
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.6e-11 Score=98.72 Aligned_cols=123 Identities=12% Similarity=0.010 Sum_probs=84.8
Q ss_pred CeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
.+|||||||+|..+..+++. +.+|+++|+ +.+++.+++++..+. ..++++...|...... ....
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~------------~~rv~v~~~Da~~~l~-~~~~ 157 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR------------APRVKIRVDDARMVAE-SFTP 157 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC------------TTTEEEEESCHHHHHH-TCCT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC------------CCceEEEECcHHHHHh-hccC
Confidence 49999999999999999873 678999998 569999999875432 3578887755432210 1124
Q ss_pred CCccEEEEccc--ccCCcC--HHHHHHHHHHhcCCCeEEEEEEEecCh-hHHHHHHHHHhcCCe
Q 027594 143 PPFDYIIGTDV--VYAEHL--LEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQMWKSNFN 201 (221)
Q Consensus 143 ~~fD~Vi~~d~--~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~r~~-~~~~~~~~~~~~~f~ 201 (221)
++||+|++.-. .+.... ...+++.+.++|+|||.+++-...... .....+.+.+++.|.
T Consensus 158 ~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~ 221 (317)
T 3gjy_A 158 ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFE 221 (317)
T ss_dssp TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCS
T ss_pred CCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCC
Confidence 68999998422 111222 268999999999999998876553322 234555666666663
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.6e-11 Score=101.41 Aligned_cols=125 Identities=14% Similarity=0.008 Sum_probs=80.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHh--hhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++|||||||+|..+..+++. +.+|+++|+ +.+++.+++++... ++. .+++++...|.... +
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~----------~~rv~~~~~D~~~~--l 175 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS----------HPKLDLFCGDGFEF--L 175 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG----------CTTEEEECSCHHHH--H
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccC----------CCCEEEEEChHHHH--H
Confidence 4579999999999999999876 468999998 56999999987653 210 25677776554321 1
Q ss_pred cccCCCccEEEEcccccC--CcC-H-HHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHhcCC
Q 027594 139 KAVAPPFDYIIGTDVVYA--EHL-L-EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNF 200 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~--~~~-~-~~l~~~~~~ll~~~g~~~i~~~~r--~~~~~~~~~~~~~~~f 200 (221)
....++||+|+++.+-.. ... . ..+++.+.++|+|||.+++..... .........+.+++.|
T Consensus 176 ~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF 243 (314)
T 2b2c_A 176 KNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIF 243 (314)
T ss_dssp HHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred HhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHC
Confidence 123568999998543211 111 1 688999999999999988754221 2222334444444444
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=98.55 Aligned_cols=103 Identities=10% Similarity=-0.013 Sum_probs=77.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-------CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g-------a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
++.+|||+|||+|...+.+++.. .+++++|+ +.+++.++.|+..++. ++.+...|....
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-------------~~~i~~~D~l~~ 196 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------------KMTLLHQDGLAN 196 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------------CCEEEESCTTSC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-------------CceEEECCCCCc
Confidence 56799999999999999888653 57999998 5699999999988763 355555443321
Q ss_pred CCccccCCCccEEEEcccccCCcC------------------HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 136 DHIKAVAPPFDYIIGTDVVYAEHL------------------LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 136 ~~~~~~~~~fD~Vi~~d~~y~~~~------------------~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
....+||+|++++|+..... ...++..+.++|+|||++++..+.
T Consensus 197 ----~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 197 ----LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp ----CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ----cccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 12468999999999522111 125788889999999998887754
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-11 Score=95.76 Aligned_cols=101 Identities=7% Similarity=0.031 Sum_probs=75.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
...+|||||||+|.+++.++.. .++|+++|++ .+++.+++|+..|+. ...+... +... ..
T Consensus 132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-------------~~~~~v~---D~~~-~~ 194 (281)
T 3lcv_B 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-------------PHRTNVA---DLLE-DR 194 (281)
T ss_dssp CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-------------CEEEEEC---CTTT-SC
T ss_pred CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-------------CceEEEe---eecc-cC
Confidence 3569999999999999999876 4579999985 599999999999885 3455443 3322 22
Q ss_pred cCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
+..+||+++++.++.+.+. -..++ .+.+.|+++|.++ +.+.
T Consensus 195 p~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvV-Sfp~ 237 (281)
T 3lcv_B 195 LDEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVV-TFPT 237 (281)
T ss_dssp CCSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEE-EEEC
T ss_pred CCCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEE-eccc
Confidence 4678999999999887432 22344 7788899998865 4554
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=94.17 Aligned_cols=121 Identities=7% Similarity=-0.060 Sum_probs=81.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh--hhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+++|||||||+|..+..+++.+.+|+++|+ +++++.+++++... +.. .+++++...|- ...
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~----------~~rv~~~~~D~---~~~-- 136 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKN----------NKNFTHAKQLL---DLD-- 136 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHT----------CTTEEEESSGG---GSC--
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccC----------CCeEEEEechH---HHH--
Confidence 4579999999999999988766767999998 56999998876431 220 24676665332 221
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC--hhHHHHHHHHHhcCCeEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~--~~~~~~~~~~~~~~f~v~~v 205 (221)
. ++||+|++.. .+...+++.+.++|+|||.+++...... ........+.+++.|.....
T Consensus 137 ~-~~fD~Ii~d~-----~dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~ 197 (262)
T 2cmg_A 137 I-KKYDLIFCLQ-----EPDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMP 197 (262)
T ss_dssp C-CCEEEEEESS-----CCCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred H-hhCCEEEECC-----CChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEE
Confidence 1 6899999862 1223489999999999999887544322 12234445555666755443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-11 Score=100.04 Aligned_cols=139 Identities=12% Similarity=-0.010 Sum_probs=80.4
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCC
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
.+-+++..|.+.+... ...++.+|||||||+|..+..+++. .+|+++|...++..++++ ...
T Consensus 63 ~~sR~a~KL~~i~~~~--------~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m~~~a~~~----~~~----- 124 (276)
T 2wa2_A 63 AVSRGTAKLAWIDERG--------GVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYTLGTSGHEK----PRL----- 124 (276)
T ss_dssp --CHHHHHHHHHHHTT--------SCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEECCCCTTSCC----CCC-----
T ss_pred cCchHHHHHHHHHHcC--------CCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECchhhhhhhhc----hhh-----
Confidence 3445566666555432 2346889999999999999999988 789999985553222211 000
Q ss_pred CCCCCCCceEEE--EEEecCCCCccccCCCccEEEEcccccCCcCH----H---HHHHHHHHhcCCCe--EEEEEEEecC
Q 027594 117 PGSDLLGSIQAV--ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL----E---PLLQTIFALSGPKT--TILLGYEIRS 185 (221)
Q Consensus 117 ~~~~~~~~v~~~--~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~----~---~l~~~~~~ll~~~g--~~~i~~~~r~ 185 (221)
......++.+. ..|... + +..+||+|+++-. +..... . .++..+.++|+||| .+++......
T Consensus 125 -~~~~~~~v~~~~~~~D~~~---l--~~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~ 197 (276)
T 2wa2_A 125 -VETFGWNLITFKSKVDVTK---M--EPFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPY 197 (276)
T ss_dssp -CCCTTGGGEEEECSCCGGG---C--CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCC
T ss_pred -hhhcCCCeEEEeccCcHhh---C--CCCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCC
Confidence 00001156666 433332 2 2568999998655 322111 1 36788889999999 8777433222
Q ss_pred hhHHHHHHHHHhcCC
Q 027594 186 TSVHEQMLQMWKSNF 200 (221)
Q Consensus 186 ~~~~~~~~~~~~~~f 200 (221)
......+++.++..|
T Consensus 198 ~~~~~~~l~~l~~~f 212 (276)
T 2wa2_A 198 SCDVLEALMKMQARF 212 (276)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHc
Confidence 211224455555444
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.2e-10 Score=91.53 Aligned_cols=100 Identities=8% Similarity=-0.048 Sum_probs=72.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
....+|||||||+|.+++.+. -+.+|+++|+ +.+++.+++++..++. +..+...|. .... .
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~-------------~~~~~v~D~---~~~~-~ 165 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW-------------DFTFALQDV---LCAP-P 165 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC-------------EEEEEECCT---TTSC-C
T ss_pred CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC-------------CceEEEeec---ccCC-C
Confidence 356799999999999999988 6668999998 5699999999988864 455555333 3222 3
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
..+||+|++..++++-+. -..+. .+.+.|++++.+ ++.+
T Consensus 166 ~~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vv-VsfP 206 (253)
T 3frh_A 166 AEAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMA-VSFP 206 (253)
T ss_dssp CCBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEE-EEEE
T ss_pred CCCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEE-EEcC
Confidence 568999999988776321 22233 555678888765 5555
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=9.5e-10 Score=101.09 Aligned_cols=151 Identities=12% Similarity=0.039 Sum_probs=103.2
Q ss_pred eEEEEEcCeEEEEeeCCCCCcccceecc-------hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh
Q 027594 13 VINLEVLGHQLQFSQDPNSKHLGTTVWD-------ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL 85 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~-------~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ 85 (221)
.|.+.+.....++..+..+.....+-|+ -...||..+.... ...++..|||.+||+|.+.+.+|..
T Consensus 139 ~i~v~l~~~~~~l~ld~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~~-------~~~~~~~llDP~CGSGt~lIeAa~~ 211 (703)
T 3v97_A 139 RVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRS-------GWQPGTPLLDPMCGSGTLLIEAAML 211 (703)
T ss_dssp EEEEEEETTEEEEEEESSSSCTTCCSSSCSSCCCSSCHHHHHHHHHHT-------TCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred EEEEEEECCEEEEEEecCCCccccccccccCCCCCCcHHHHHHHHHhh-------CCCCCCeEEecCCCCcHHHHHHHHH
Confidence 4666677888888877543333333332 1235666665542 2336779999999999999998865
Q ss_pred C--------------------------------------------CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 86 G--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 86 g--------------------------------------------a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
+ .+|+++|+ +.+++.++.|+..+++
T Consensus 212 a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv---------- 281 (703)
T 3v97_A 212 ATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGI---------- 281 (703)
T ss_dssp HTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTC----------
T ss_pred HhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCC----------
Confidence 3 46999998 6699999999999987
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccC----CcCHHHHHHHHHHhc---CCCeEEEEEEE
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA----EHLLEPLLQTIFALS---GPKTTILLGYE 182 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~----~~~~~~l~~~~~~ll---~~~g~~~i~~~ 182 (221)
.+.+++...|..+... +...++||+|++|+|+-. ...+..+.+.+.+.+ .|||.+++...
T Consensus 282 -~~~i~~~~~D~~~~~~-~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 282 -GELITFEVKDVAQLTN-PLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA 348 (703)
T ss_dssp -GGGEEEEECCGGGCCC-SCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred -CCceEEEECChhhCcc-ccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 3568888866654321 111237999999999643 234566666665554 48999888653
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-10 Score=97.80 Aligned_cols=96 Identities=14% Similarity=0.111 Sum_probs=75.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||+|||+|..+..+++. +.+++++|.+.+++.+++. .++++...|..+ ..
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~------------------~~v~~~~~d~~~--~~--- 244 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGS------------------NNLTYVGGDMFT--SI--- 244 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCB------------------TTEEEEECCTTT--CC---
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccC------------------CCcEEEeccccC--CC---
Confidence 4579999999999999999876 5689999996677655431 237777755432 11
Q ss_pred CCCccEEEEcccccCCcCHH--HHHHHHHHhcCC---CeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGP---KTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~--~l~~~~~~ll~~---~g~~~i~~~~ 183 (221)
..||+|+++.++++..+.. .+++.+.++|+| ||++++....
T Consensus 245 -p~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 290 (352)
T 1fp2_A 245 -PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 290 (352)
T ss_dssp -CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred -CCccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEee
Confidence 2499999999999877666 999999999999 9999987654
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.08 E-value=6.9e-11 Score=96.53 Aligned_cols=120 Identities=13% Similarity=0.022 Sum_probs=74.2
Q ss_pred eecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCC
Q 027594 37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 37 ~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
.+-+++..|.+.+... ...++.+|||||||+|..+..+++. .+|+++|...++..++++ ....
T Consensus 55 ~~sR~a~KL~~i~~~~--------~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m~~~a~~~----~~~~---- 117 (265)
T 2oxt_A 55 SVSRGTAKLAWMEERG--------YVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYTLGVGGHEV----PRIT---- 117 (265)
T ss_dssp CSSTHHHHHHHHHHHT--------SCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCCSSCCC----CCCC----
T ss_pred ccchHHHHHHHHHHcC--------CCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECchhhhhhhhh----hhhh----
Confidence 3445666776666542 3346789999999999999999988 789999985543222111 0000
Q ss_pred CCCCCCCceEEE--EEEecCCCCccccCCCccEEEEcccccCCcCH----H---HHHHHHHHhcCCCe--EEEEEE
Q 027594 117 PGSDLLGSIQAV--ELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLL----E---PLLQTIFALSGPKT--TILLGY 181 (221)
Q Consensus 117 ~~~~~~~~v~~~--~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~----~---~l~~~~~~ll~~~g--~~~i~~ 181 (221)
.....++.+. ..|.. .+ +..+||+|+++-. +..... . .++..+.++|+||| .+++..
T Consensus 118 --~~~~~~v~~~~~~~D~~---~l--~~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv 185 (265)
T 2oxt_A 118 --ESYGWNIVKFKSRVDIH---TL--PVERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKV 185 (265)
T ss_dssp --CBTTGGGEEEECSCCTT---TS--CCCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred --hccCCCeEEEecccCHh---HC--CCCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence 0001146665 43332 22 2568999998654 322111 1 26788889999999 877744
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.3e-10 Score=95.35 Aligned_cols=96 Identities=16% Similarity=0.019 Sum_probs=74.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||||||+|..+..+++.+ .+++++|.+.+++.+++. .++++...|..+ +.
T Consensus 209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~------------------~~v~~~~~d~~~----~~- 265 (372)
T 1fp1_D 209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL------------------SGIEHVGGDMFA----SV- 265 (372)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCC------------------TTEEEEECCTTT----CC-
T ss_pred CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhc------------------CCCEEEeCCccc----CC-
Confidence 56799999999999999999875 468888986677655421 247777765543 11
Q ss_pred CCCccEEEEcccccCCcCHH--HHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~--~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
. .||+|+++.++++.++.. .+++.+.++|+|||++++....
T Consensus 266 ~-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 266 P-QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp C-CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred C-CCCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 2 399999999999877666 9999999999999999987543
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-09 Score=90.76 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=62.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...++.+|||||||+|.++..+++.+.+|+++|+ +++++.+++++.. .+++++...|..+. .
T Consensus 47 ~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~--------------~~~v~vi~gD~l~~---~ 109 (295)
T 3gru_A 47 NLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL--------------YNNIEIIWGDALKV---D 109 (295)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH--------------CSSEEEEESCTTTS---C
T ss_pred CCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc--------------CCCeEEEECchhhC---C
Confidence 3446789999999999999999999999999998 5699999998872 24688888655443 2
Q ss_pred ccCCCccEEEEcccccC
Q 027594 140 AVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~ 156 (221)
....+||.|+++.+++.
T Consensus 110 ~~~~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 110 LNKLDFNKVVANLPYQI 126 (295)
T ss_dssp GGGSCCSEEEEECCGGG
T ss_pred cccCCccEEEEeCcccc
Confidence 23457999999877654
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-09 Score=94.71 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=79.2
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
...+++++.+.. ...++.+|||+|||+|.+++.+++. +.+++++|+ +.+++.+
T Consensus 24 P~~l~~~~~~~~-------~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------- 80 (421)
T 2ih2_A 24 PPEVVDFMVSLA-------EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------- 80 (421)
T ss_dssp CHHHHHHHHHHC-------CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------------
T ss_pred CHHHHHHHHHhh-------ccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------------
Confidence 356677777663 2234669999999999999999864 468999998 5566554
Q ss_pred CCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC-----------------------------HHHHHHHHH
Q 027594 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----------------------------LEPLLQTIF 168 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~-----------------------------~~~l~~~~~ 168 (221)
.++.+...|..... ...+||+|++|+|+..... ...++..+.
T Consensus 81 -----~~~~~~~~D~~~~~----~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~ 151 (421)
T 2ih2_A 81 -----PWAEGILADFLLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAV 151 (421)
T ss_dssp -----TTEEEEESCGGGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHH
T ss_pred -----CCCcEEeCChhhcC----ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHH
Confidence 13566665554322 2468999999999764322 125678888
Q ss_pred HhcCCCeEEEEEEEec
Q 027594 169 ALSGPKTTILLGYEIR 184 (221)
Q Consensus 169 ~ll~~~g~~~i~~~~r 184 (221)
++|+|+|.+.+..+..
T Consensus 152 ~~Lk~~G~~~~i~p~~ 167 (421)
T 2ih2_A 152 RLLKPGGVLVFVVPAT 167 (421)
T ss_dssp HHEEEEEEEEEEEEGG
T ss_pred HHhCCCCEEEEEEChH
Confidence 9999999998887753
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-09 Score=89.55 Aligned_cols=78 Identities=17% Similarity=0.110 Sum_probs=59.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
+|.+|||+|||+|..++.+|.+ ..+|+++|. +.+++.+++|++.+++ .++.+...|+.......
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~~ 169 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------------SCCELAEEDFLAVSPSD 169 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCGGGSCTTC
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCChHhcCccc
Confidence 6789999999999999998864 258999998 5699999999999875 46888886665443211
Q ss_pred ccCCCccEEEEccc
Q 027594 140 AVAPPFDYIIGTDV 153 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~ 153 (221)
....+||.|++..+
T Consensus 170 ~~~~~fD~Vl~D~P 183 (309)
T 2b9e_A 170 PRYHEVHYILLDPS 183 (309)
T ss_dssp GGGTTEEEEEECCC
T ss_pred cccCCCCEEEEcCC
Confidence 11157999998644
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-09 Score=93.08 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=73.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||||||+|..+..+++. +.+++++|.+.+++.+++ .+++++...|..+ .. +
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~--~~--p 260 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA------------------FSGVEHLGGDMFD--GV--P 260 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------CTTEEEEECCTTT--CC--C
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh------------------cCCCEEEecCCCC--CC--C
Confidence 4679999999999999999876 457999999767765542 1357888866543 12 2
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.. |+|+++.++++..+ ...+++.+.++|+|||++++....
T Consensus 261 -~~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 302 (368)
T 3reo_A 261 -KG-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI 302 (368)
T ss_dssp -CC-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred -CC-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 23 99999999986544 458899999999999999987643
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-11 Score=96.37 Aligned_cols=81 Identities=19% Similarity=0.060 Sum_probs=62.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-h-------hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I-------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~-------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
++.+|||+|||+|..++.+|+.|++|+++|. + ++++.+++|++.|++ .+++++...|..+.
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~-----------~~ri~~~~~d~~~~ 151 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDT-----------AARINLHFGNAAEQ 151 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH-----------HTTEEEEESCHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC-----------ccCeEEEECCHHHH
Confidence 5679999999999999999999999999997 8 889999999998886 24588888655432
Q ss_pred CCccccC--CCccEEEEcccccC
Q 027594 136 DHIKAVA--PPFDYIIGTDVVYA 156 (221)
Q Consensus 136 ~~~~~~~--~~fD~Vi~~d~~y~ 156 (221)
.. .... .+||+|++++++.+
T Consensus 152 l~-~~~~~~~~fD~V~~dP~~~~ 173 (258)
T 2r6z_A 152 MP-ALVKTQGKPDIVYLDPMYPE 173 (258)
T ss_dssp HH-HHHHHHCCCSEEEECCCC--
T ss_pred HH-hhhccCCCccEEEECCCCCC
Confidence 11 0112 68999998766543
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=95.02 Aligned_cols=107 Identities=13% Similarity=-0.008 Sum_probs=78.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---------------CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceE
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ 126 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~---------------ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~ 126 (221)
.++.+|||.|||+|.+.+.+++. +.+++++|+ +.+++.++.|+..++.. ..++.
T Consensus 170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~----------~~~~~ 239 (445)
T 2okc_A 170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----------TDRSP 239 (445)
T ss_dssp CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----------SSCCS
T ss_pred CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC----------cCCCC
Confidence 35679999999999998888753 356999998 66999999999887651 01445
Q ss_pred EEEEEecCCCCccccCCCccEEEEcccccCCcC-----------------HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 127 AVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-----------------LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 127 ~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~-----------------~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
+...|.... . ...+||+|++++|+..... ...++..+.++|+|||++.++.+.
T Consensus 240 i~~gD~l~~---~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~ 309 (445)
T 2okc_A 240 IVCEDSLEK---E-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD 309 (445)
T ss_dssp EEECCTTTS---C-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred EeeCCCCCC---c-ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence 555333221 1 1348999999999765321 136788889999999998887764
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=92.43 Aligned_cols=96 Identities=15% Similarity=0.109 Sum_probs=74.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||||||+|..+..+++. +.+++++|.+.+++.+++ .+++++...|..+ . .+
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~D~~~--~--~p 258 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ------------------FPGVTHVGGDMFK--E--VP 258 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------CTTEEEEECCTTT--C--CC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh------------------cCCeEEEeCCcCC--C--CC
Confidence 5679999999999999999875 457999999777665442 1468888866543 1 22
Q ss_pred CCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
. . |+|+++.++++. +....+++.+.++|+|||++++....
T Consensus 259 ~-~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~ 300 (364)
T 3p9c_A 259 S-G-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI 300 (364)
T ss_dssp C-C-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred C-C-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 2 3 999999999875 44668999999999999999987654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.3e-10 Score=98.61 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=63.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh--hhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+|.+|||||||+|..++.+++.+++|+++|. +.+++.+++|++.+ ++ +++++...|..+.... .
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl------------~~i~~i~~Da~~~L~~-~ 159 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG------------KDVNILTGDFKEYLPL-I 159 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT------------CEEEEEESCGGGSHHH-H
T ss_pred CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC------------CcEEEEECcHHHhhhh-c
Confidence 3789999999999999999999999999998 56999999999988 64 4688888665442110 1
Q ss_pred cCCCccEEEEcccccC
Q 027594 141 VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~ 156 (221)
...+||+|+++++...
T Consensus 160 ~~~~fDvV~lDPPrr~ 175 (410)
T 3ll7_A 160 KTFHPDYIYVDPARRS 175 (410)
T ss_dssp HHHCCSEEEECCEEC-
T ss_pred cCCCceEEEECCCCcC
Confidence 1358999999877554
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.9e-10 Score=95.73 Aligned_cols=136 Identities=13% Similarity=-0.008 Sum_probs=77.2
Q ss_pred ecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-----hhhHHHHHHHHHHhhhcc
Q 027594 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-----IEVLPLLKRNVEWNTSRI 112 (221)
Q Consensus 38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-----~~~l~~~~~n~~~n~~~~ 112 (221)
+-+++..|.+.+.+. ...++.+|||||||+|..+..+++. .+|+++|. +.++..+. ++..+
T Consensus 64 ~sR~a~KL~~i~~~~--------~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~--- 129 (305)
T 2p41_A 64 VSRGSAKLRWFVERN--------LVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYG--- 129 (305)
T ss_dssp SSTHHHHHHHHHHTT--------SSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTT---
T ss_pred cccHHHHHHHHHHcC--------CCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcC---
Confidence 334566666655432 2346789999999999999999988 68999997 32221110 00000
Q ss_pred ccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEccccc---CCcCHH---HHHHHHHHhcCCCeEEEEEEEecCh
Q 027594 113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY---AEHLLE---PLLQTIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 113 ~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y---~~~~~~---~l~~~~~~ll~~~g~~~i~~~~r~~ 186 (221)
.+++.+... . +.... +..+||+|+++-... ...+.. .++..+.++|+|||.+++.......
T Consensus 130 ---------~~~v~~~~~-~-D~~~l--~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~ 196 (305)
T 2p41_A 130 ---------WNLVRLQSG-V-DVFFI--PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYM 196 (305)
T ss_dssp ---------GGGEEEECS-C-CTTTS--CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCS
T ss_pred ---------CCCeEEEec-c-ccccC--CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCC
Confidence 134666653 0 22222 246899999854321 111111 4677788999999987763322211
Q ss_pred hHHHHHHHHHhcCC
Q 027594 187 SVHEQMLQMWKSNF 200 (221)
Q Consensus 187 ~~~~~~~~~~~~~f 200 (221)
.....++..++..|
T Consensus 197 ~~~~~~l~~l~~~f 210 (305)
T 2p41_A 197 SSVIEKMEALQRKH 210 (305)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHc
Confidence 22334555554433
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.6e-10 Score=84.56 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=79.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..+|.+|||||||+ +.+|. +.|++.++++... ++++...|..+......
T Consensus 10 ~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~~----------------~~~~~~~d~~~~~~~~~ 59 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTGN----------------EGRVSVENIKQLLQSAH 59 (176)
T ss_dssp CCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTTT----------------TSEEEEEEGGGGGGGCC
T ss_pred CCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhccc----------------CcEEEEechhcCccccC
Confidence 44788999999996 23897 5599998876432 35777766654322111
Q ss_pred cCCCccEEEEcccccCC-cCHHHHHHHHHHhcCCCeEEEEEEEecCh-------hHHHHHHHHHh-cCCeEE
Q 027594 141 VAPPFDYIIGTDVVYAE-HLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWK-SNFNVK 203 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~-~~~~~l~~~~~~ll~~~g~~~i~~~~r~~-------~~~~~~~~~~~-~~f~v~ 203 (221)
..++||+|+++.++++. .+...+++.+.++|+|||++++..+.... .....+.+.++ .+| ++
T Consensus 60 ~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~ 130 (176)
T 2ld4_A 60 KESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE 130 (176)
T ss_dssp CSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred CCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence 46789999999999987 88899999999999999999996653221 11345555554 478 54
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.1e-10 Score=94.45 Aligned_cols=96 Identities=14% Similarity=0.023 Sum_probs=74.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++.+|||||||+|..+..+++.. .+++++|.+.+++.+++ ..++++...|..+ +
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~----~-- 248 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------------------NENLNFVGGDMFK----S-- 248 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------------------CSSEEEEECCTTT----C--
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------------------CCCcEEEeCccCC----C--
Confidence 45799999999999999999874 47999998766654432 1247777755543 1
Q ss_pred CCCccEEEEcccccCCcCHH--HHHHHHHHhcCC---CeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAEHLLE--PLLQTIFALSGP---KTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~--~l~~~~~~ll~~---~g~~~i~~~~ 183 (221)
...||+|+++.++++..+.. .+++.+.++|+| ||++++....
T Consensus 249 ~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~ 295 (358)
T 1zg3_A 249 IPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS 295 (358)
T ss_dssp CCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred CCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence 12599999999999877755 999999999999 9999987644
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.97 E-value=9.4e-10 Score=89.25 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=60.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||||||+|.++..+++.+++|+++|+ +++++.+++++... +++++...|..+......
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~--------------~~v~~i~~D~~~~~~~~~ 92 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQ--------------KNITIYQNDALQFDFSSV 92 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTC--------------TTEEEEESCTTTCCGGGS
T ss_pred CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhC--------------CCcEEEEcchHhCCHHHh
Confidence 346789999999999999999999999999998 56999999887641 467888866554432111
Q ss_pred -cCCCccEEEEcccccC
Q 027594 141 -VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 141 -~~~~fD~Vi~~d~~y~ 156 (221)
...+|| |++|.+++-
T Consensus 93 ~~~~~~~-vv~NlPY~i 108 (255)
T 3tqs_A 93 KTDKPLR-VVGNLPYNI 108 (255)
T ss_dssp CCSSCEE-EEEECCHHH
T ss_pred ccCCCeE-EEecCCccc
Confidence 135688 888877654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=92.55 Aligned_cols=94 Identities=17% Similarity=0.204 Sum_probs=68.6
Q ss_pred CCCCeEEEeCCC------ccHHHHHHHHh---CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEe
Q 027594 63 LKGKRVIELGAG------CGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW 132 (221)
Q Consensus 63 ~~~~~vLelGcG------~G~~~l~~a~~---ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw 132 (221)
.++.+||||||| +|..++.+++. +++|+++|++ .+. . . ..++++...|.
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~-~------------~~rI~fv~GDa 273 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------V-D------------ELRIRTIQGDQ 273 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------G-C------------BTTEEEEECCT
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------h-c------------CCCcEEEEecc
Confidence 356899999999 77777777653 6799999984 451 1 1 25788888554
Q ss_pred cCCCCcccc------CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 133 GNEDHIKAV------APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 133 ~~~~~~~~~------~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. ..+.. .++||+|+++. .++..+....++.+.++|||||.+++..
T Consensus 274 ~---dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~D 324 (419)
T 3sso_A 274 N---DAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIED 324 (419)
T ss_dssp T---CHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred c---ccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEe
Confidence 3 32222 47899999764 4555667889999999999999998864
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-09 Score=87.47 Aligned_cols=108 Identities=13% Similarity=0.090 Sum_probs=76.1
Q ss_pred CeEEEeCCCc---cHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-
Q 027594 66 KRVIELGAGC---GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI- 138 (221)
Q Consensus 66 ~~vLelGcG~---G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~- 138 (221)
.+|||||||+ |.....+.+. +++|+++|. +.|+..++.++..+. ..++.++..|..+....
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------------~~~~~~v~aD~~~~~~~l 147 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------------EGRTAYVEADMLDPASIL 147 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------------SSEEEEEECCTTCHHHHH
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------------CCcEEEEEecccChhhhh
Confidence 5899999997 4444444333 678999998 669999988765432 24688888776553210
Q ss_pred --cccCCCcc-----EEEEcccccCCcC---HHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 139 --KAVAPPFD-----YIIGTDVVYAEHL---LEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 139 --~~~~~~fD-----~Vi~~d~~y~~~~---~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
+.....|| .|+++.++++..+ ...+++.+.+.|+|||++++++....
T Consensus 148 ~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 148 DAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp TCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred cccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 00012344 5788899988655 46899999999999999999887654
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-11 Score=97.05 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=57.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|||+|.++..++..+.+|+++|. +++++.+++|+.. .+++++...|+.+.. .
T Consensus 27 ~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~--------------~~~v~~~~~D~~~~~---~ 89 (245)
T 1yub_A 27 LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--------------NTRVTLIHQDILQFQ---F 89 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--------------CSEEEECCSCCTTTT---C
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc--------------CCceEEEECChhhcC---c
Confidence 346779999999999999999999999999998 5588888776641 246777775554432 2
Q ss_pred c-CCCccEEEEcccccC
Q 027594 141 V-APPFDYIIGTDVVYA 156 (221)
Q Consensus 141 ~-~~~fD~Vi~~d~~y~ 156 (221)
. ..+| .|+++.+++.
T Consensus 90 ~~~~~f-~vv~n~Py~~ 105 (245)
T 1yub_A 90 PNKQRY-KIVGNIPYHL 105 (245)
T ss_dssp CCSSEE-EEEEECCSSS
T ss_pred ccCCCc-EEEEeCCccc
Confidence 2 2568 7888877654
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.8e-09 Score=97.48 Aligned_cols=102 Identities=13% Similarity=0.028 Sum_probs=74.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHH---HhCC---EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMA---LLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 134 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a---~~ga---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~ 134 (221)
...+++.|||+|||+|.++..++ +.++ +|+++|-+.+...+++.+..|+. .++|+++..+.
T Consensus 354 ~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~-----------~dkVtVI~gd~-- 420 (637)
T 4gqb_A 354 KDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEW-----------GSQVTVVSSDM-- 420 (637)
T ss_dssp TTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTT-----------GGGEEEEESCT--
T ss_pred ccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccC-----------CCeEEEEeCcc--
Confidence 34566789999999999955444 3332 58999986677788889999987 57899999544
Q ss_pred CCCccccCCCccEEEEccc---ccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 135 EDHIKAVAPPFDYIIGTDV---VYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 135 ~~~~~~~~~~fD~Vi~~d~---~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
..... ++++|+||+--+ +.++. ....+....+.|||||.++
T Consensus 421 -eev~L-PEKVDIIVSEwMG~fLl~E~-mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 421 -REWVA-PEKADIIVSELLGSFADNEL-SPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp -TTCCC-SSCEEEEECCCCBTTBGGGC-HHHHHHHHGGGEEEEEEEE
T ss_pred -eeccC-CcccCEEEEEcCcccccccC-CHHHHHHHHHhcCCCcEEc
Confidence 33332 578999987433 23344 4578888889999998764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-08 Score=80.69 Aligned_cols=89 Identities=11% Similarity=0.047 Sum_probs=61.7
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCC
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL 121 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~ 121 (221)
..+++.+.+.. ...++.+|||+|||+|.++..++..+.+|+++|. +++++.+++|+...
T Consensus 16 ~~~~~~i~~~~-------~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~------------- 75 (244)
T 1qam_A 16 KHNIDKIMTNI-------RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH------------- 75 (244)
T ss_dssp HHHHHHHHTTC-------CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC-------------
T ss_pred HHHHHHHHHhC-------CCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC-------------
Confidence 34455555442 3346789999999999999999999999999998 56999999876531
Q ss_pred CCceEEEEEEecCCCCccccCCCccEEEEccccc
Q 027594 122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY 155 (221)
Q Consensus 122 ~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y 155 (221)
+++++...|..+.... ....| .|+++.+++
T Consensus 76 -~~v~~~~~D~~~~~~~--~~~~~-~vv~nlPy~ 105 (244)
T 1qam_A 76 -DNFQVLNKDILQFKFP--KNQSY-KIFGNIPYN 105 (244)
T ss_dssp -CSEEEECCCGGGCCCC--SSCCC-EEEEECCGG
T ss_pred -CCeEEEEChHHhCCcc--cCCCe-EEEEeCCcc
Confidence 3677777665443211 12344 567666654
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=9.6e-09 Score=84.00 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=59.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++ +|||||||+|.++..+++.+++|+++|. +++++.+++++.. .++++...|..+.+..
T Consensus 45 ~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~---------------~~v~vi~~D~l~~~~~-- 106 (271)
T 3fut_A 45 PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG---------------LPVRLVFQDALLYPWE-- 106 (271)
T ss_dssp CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT---------------SSEEEEESCGGGSCGG--
T ss_pred CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC---------------CCEEEEECChhhCChh--
Confidence 3467 9999999999999999999999999998 5699999987652 3578888665443321
Q ss_pred cCCCccEEEEcccccCC
Q 027594 141 VAPPFDYIIGTDVVYAE 157 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~ 157 (221)
....+|.|++|.+++-.
T Consensus 107 ~~~~~~~iv~NlPy~is 123 (271)
T 3fut_A 107 EVPQGSLLVANLPYHIA 123 (271)
T ss_dssp GSCTTEEEEEEECSSCC
T ss_pred hccCccEEEecCccccc
Confidence 11368999999886653
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-08 Score=90.43 Aligned_cols=110 Identities=11% Similarity=-0.123 Sum_probs=76.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--------------------CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--------------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL 122 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--------------------ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 122 (221)
++.+|||.+||+|.+.+.+++. ...++++|+ +.++..++.|+..++.... + .
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~---~----~ 241 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN---L----D 241 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB---G----G
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc---c----c
Confidence 5779999999999988877643 136999998 5699999999988765100 0 0
Q ss_pred CceEEEEEEecCCCCcc-ccCCCccEEEEcccccCCcC--------------HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 123 GSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVVYAEHL--------------LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 123 ~~v~~~~~dw~~~~~~~-~~~~~fD~Vi~~d~~y~~~~--------------~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..+.+.. ++..... ....+||+|++|+|+-.... ...++..+.++|+|||++.+..+.
T Consensus 242 ~~~~I~~---gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~ 314 (541)
T 2ar0_A 242 HGGAIRL---GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD 314 (541)
T ss_dssp GTBSEEE---SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccCCeEe---CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence 0144444 3322211 22468999999999754321 236788888999999998887764
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.4e-08 Score=82.30 Aligned_cols=110 Identities=17% Similarity=0.122 Sum_probs=69.6
Q ss_pred CCCCCeEEEeCC------CccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEE-EEEEe
Q 027594 62 KLKGKRVIELGA------GCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELDW 132 (221)
Q Consensus 62 ~~~~~~vLelGc------G~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~-~~~dw 132 (221)
..++.+|||||| |+|. .+.+... +++|+++|+++. + .++++ ...|+
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs-~~~a~~~~~~~~V~gvDis~~------------v------------~~v~~~i~gD~ 115 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT-AVLRQWLPTGTLLVDSDLNDF------------V------------SDADSTLIGDC 115 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH-HHHHHHSCTTCEEEEEESSCC------------B------------CSSSEEEESCG
T ss_pred CCCCCEEEEeCCCCCCCCCcHH-HHHHHHcCCCCEEEEEECCCC------------C------------CCCEEEEECcc
Confidence 446789999999 4466 3333333 368999998543 1 13566 77666
Q ss_pred cCCCCccccCCCccEEEEcccccC-----------CcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc-CC
Q 027594 133 GNEDHIKAVAPPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NF 200 (221)
Q Consensus 133 ~~~~~~~~~~~~fD~Vi~~d~~y~-----------~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~-~f 200 (221)
.+.. ...+||+|+++..... ....+.+++.+.++|+|||.+++........ ..+.+.+++ +|
T Consensus 116 ~~~~----~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~--~~l~~~l~~~GF 189 (290)
T 2xyq_A 116 ATVH----TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWN--ADLYKLMGHFSW 189 (290)
T ss_dssp GGCC----CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCC--HHHHHHHTTEEE
T ss_pred ccCC----ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCH--HHHHHHHHHcCC
Confidence 5432 1368999998632111 1234578999999999999998855433222 455666655 47
Q ss_pred eE
Q 027594 201 NV 202 (221)
Q Consensus 201 ~v 202 (221)
..
T Consensus 190 ~~ 191 (290)
T 2xyq_A 190 WT 191 (290)
T ss_dssp EE
T ss_pred cE
Confidence 43
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.80 E-value=9.1e-08 Score=85.38 Aligned_cols=131 Identities=9% Similarity=-0.022 Sum_probs=85.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-----CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-----ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++.+|||.+||||.+.+.+++. ..++++.|+ +.++..++.|+..++.. .+++.+...|.-...
T Consensus 220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----------~~~~~I~~gDtL~~d 289 (542)
T 3lkd_A 220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP----------IENQFLHNADTLDED 289 (542)
T ss_dssp CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEESCTTTSC
T ss_pred CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC----------cCccceEecceeccc
Confidence 46779999999999888777765 457999998 56999999999887751 134555553322211
Q ss_pred CccccCCCccEEEEcccccCCc--------C---------------HHHHHHHHHHhcC-CCeEEEEEEEecC---hhHH
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEH--------L---------------LEPLLQTIFALSG-PKTTILLGYEIRS---TSVH 189 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~--------~---------------~~~l~~~~~~ll~-~~g~~~i~~~~r~---~~~~ 189 (221)
.......+||+|++|||+-... + --.++..+.++|+ |+|++.+..+... ....
T Consensus 290 ~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~ 369 (542)
T 3lkd_A 290 WPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAE 369 (542)
T ss_dssp SCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHH
T ss_pred ccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchh
Confidence 0112356899999999974210 0 0137888888999 9999888776532 1123
Q ss_pred HHHHHHHhcCCeEE
Q 027594 190 EQMLQMWKSNFNVK 203 (221)
Q Consensus 190 ~~~~~~~~~~f~v~ 203 (221)
..+.+.+-+.+.++
T Consensus 370 ~~iRk~Lle~~~l~ 383 (542)
T 3lkd_A 370 GTIRKALLEEGAID 383 (542)
T ss_dssp HHHHHHHHHTTCEE
T ss_pred HHHHHHHHhCCcee
Confidence 45555554444443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.3e-07 Score=87.03 Aligned_cols=134 Identities=11% Similarity=0.009 Sum_probs=85.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC-----CEEEEecc-hhhHHHH--HHHHHHhhhccccCCCCCCCCCceEEEEEEecC
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLL--KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 134 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g-----a~v~~~D~-~~~l~~~--~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~ 134 (221)
.++.+|||.|||+|.+.+.+++.. .+++++|+ +.+++.+ +.|+..|..... .....+...++..
T Consensus 320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG--------i~~~~I~~dD~L~ 391 (878)
T 3s1s_A 320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS--------NNAPTITGEDVCS 391 (878)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT--------TBCCEEECCCGGG
T ss_pred CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC--------CCcceEEecchhc
Confidence 357899999999999999988653 35999998 5699998 777766543110 0112233222222
Q ss_pred CCCccccCCCccEEEEcccccCC-c----------------------------CHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 135 EDHIKAVAPPFDYIIGTDVVYAE-H----------------------------LLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 135 ~~~~~~~~~~fD~Vi~~d~~y~~-~----------------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.. .....+||+|++|+|+... . ....++..+.++|+|||++.+..+..-
T Consensus 392 ~~--~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~ 469 (878)
T 3s1s_A 392 LN--PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQY 469 (878)
T ss_dssp CC--GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred cc--ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHH
Confidence 11 1234689999999997321 0 133467778888999999988777532
Q ss_pred h----hHHHHHHHHHhcCCeEEEec
Q 027594 186 T----SVHEQMLQMWKSNFNVKLVP 206 (221)
Q Consensus 186 ~----~~~~~~~~~~~~~f~v~~v~ 206 (221)
- .....+.+.+-+.+.+..+-
T Consensus 470 Lf~sg~~~kkLRk~LLe~~~I~aII 494 (878)
T 3s1s_A 470 LTAQGNESKAFREFLVGNFGLEHIF 494 (878)
T ss_dssp HHCCSHHHHHHHHHHTTTTCEEEEE
T ss_pred hccCChHHHHHHHHHHhCCCeEEEE
Confidence 2 12455666665555554443
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.73 E-value=8.8e-09 Score=83.60 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=56.6
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC-CCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-LLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
.+|||+|||+|..++.+|..|++|+++|. +.+...+++|++........ + + ...++++...|..+.. .....
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~-~---~~l~~~i~~~~~D~~~~L--~~~~~ 163 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEI-G---GWLQERLQLIHASSLTAL--TDITP 163 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTT-H---HHHHHHEEEEESCHHHHS--TTCSS
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhh-h---hhhhcCEEEEECCHHHHH--HhCcc
Confidence 79999999999999999999999999997 55777777776543210000 0 0 0135777775443321 11234
Q ss_pred CccEEEEcccccC
Q 027594 144 PFDYIIGTDVVYA 156 (221)
Q Consensus 144 ~fD~Vi~~d~~y~ 156 (221)
+||+|+..+++..
T Consensus 164 ~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 164 RPQVVYLDPMFPH 176 (258)
T ss_dssp CCSEEEECCCCCC
T ss_pred cCCEEEEcCCCCC
Confidence 7999998766544
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.69 E-value=3.3e-08 Score=89.64 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=68.7
Q ss_pred CCCeEEEeCCCccHHHHHH---HH-hC---------C--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEE
Q 027594 64 KGKRVIELGAGCGVAGFGM---AL-LG---------C--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA 127 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~---a~-~g---------a--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~ 127 (221)
+++.|||+|||+|.++..+ ++ .+ . +|+++|. +.++..++.... |+. .++|++
T Consensus 409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~-----------~d~VtV 476 (745)
T 3ua3_A 409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW-----------KRRVTI 476 (745)
T ss_dssp SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT-----------TTCSEE
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC-----------CCeEEE
Confidence 3568999999999997543 32 23 2 7999997 445555554443 765 567999
Q ss_pred EEEEecCCCCcccc-----CCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEE
Q 027594 128 VELDWGNEDHIKAV-----APPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 128 ~~~dw~~~~~~~~~-----~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
+..+.. ....+ .++.|+||+--+=|. .+..+..+..+.+.|+|+|.++
T Consensus 477 I~gd~e---ev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 477 IESDMR---SLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp EESCGG---GHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred EeCchh---hcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 985443 33222 578999998655443 3456778888889999998755
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.2e-08 Score=79.12 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=57.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCE----EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCN----VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~----v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++.+|||||||+|.++..+++.+.+ |+++|+ +++++.++++. . .+++++..|..+..
T Consensus 40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~-------------~~v~~i~~D~~~~~ 103 (279)
T 3uzu_A 40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G-------------ELLELHAGDALTFD 103 (279)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G-------------GGEEEEESCGGGCC
T ss_pred CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C-------------CCcEEEECChhcCC
Confidence 346789999999999999999988877 999998 56999999883 1 35788886665543
Q ss_pred CccccC-C--CccEEEEcccccC
Q 027594 137 HIKAVA-P--PFDYIIGTDVVYA 156 (221)
Q Consensus 137 ~~~~~~-~--~fD~Vi~~d~~y~ 156 (221)
...... . ..+.|++|.++|-
T Consensus 104 ~~~~~~~~~~~~~~vv~NlPY~i 126 (279)
T 3uzu_A 104 FGSIARPGDEPSLRIIGNLPYNI 126 (279)
T ss_dssp GGGGSCSSSSCCEEEEEECCHHH
T ss_pred hhHhcccccCCceEEEEccCccc
Confidence 211111 1 3457888877654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=8.7e-08 Score=77.35 Aligned_cols=76 Identities=14% Similarity=0.113 Sum_probs=52.9
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||+|||+|.++..++..+ ++|+++|+ +.+++.++++ . ..++++...|........
T Consensus 29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~---------------~~~v~~i~~D~~~~~~~~ 92 (249)
T 3ftd_A 29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G---------------DERLEVINEDASKFPFCS 92 (249)
T ss_dssp CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C---------------CTTEEEECSCTTTCCGGG
T ss_pred CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c---------------CCCeEEEEcchhhCChhH
Confidence 3467899999999999999999986 78999998 5699999876 1 135777775543332111
Q ss_pred ccCCCccEEEEccccc
Q 027594 140 AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y 155 (221)
. ..+| .|++|.+++
T Consensus 93 ~-~~~~-~vv~NlPy~ 106 (249)
T 3ftd_A 93 L-GKEL-KVVGNLPYN 106 (249)
T ss_dssp S-CSSE-EEEEECCTT
T ss_pred c-cCCc-EEEEECchh
Confidence 1 1233 667666654
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.1e-08 Score=83.12 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=58.7
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
.++.+|||+|||+|..++.+++. +.+|+++|. +++++.+++|++.++ +++++...|+..... .
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-------------~~v~~v~~d~~~l~~~l 91 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------------DRVSLFKVSYREADFLL 91 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------------TTEEEEECCGGGHHHHH
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEECCHHHHHHHH
Confidence 36789999999999999999987 478999998 669999999988764 368888866544321 1
Q ss_pred cc-cCCCccEEEEccc
Q 027594 139 KA-VAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~~-~~~~fD~Vi~~d~ 153 (221)
.. ...+||.|++..+
T Consensus 92 ~~~g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 92 KTLGIEKVDGILMDLG 107 (301)
T ss_dssp HHTTCSCEEEEEEECS
T ss_pred HhcCCCCCCEEEEcCc
Confidence 11 1157999997654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.61 E-value=2.4e-07 Score=82.72 Aligned_cols=123 Identities=10% Similarity=-0.007 Sum_probs=79.5
Q ss_pred eEEEeCCCccHHHHHHHHh-----------------CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEE
Q 027594 67 RVIELGAGCGVAGFGMALL-----------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV 128 (221)
Q Consensus 67 ~vLelGcG~G~~~l~~a~~-----------------ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~ 128 (221)
+|||.+||||.+.+.+++. ...++++|+ +.++..++.|+..+++. .++.+.
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~-----------~~i~i~ 315 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGID-----------FNFGKK 315 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCC-----------CBCCSS
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCC-----------ccccee
Confidence 9999999999877766532 346999998 56999999999988752 222212
Q ss_pred EEEecCCCCc-cccCCCccEEEEcccccCCc-----------------------------CHHHHHHHHHHhcCCCeEEE
Q 027594 129 ELDWGNEDHI-KAVAPPFDYIIGTDVVYAEH-----------------------------LLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 129 ~~dw~~~~~~-~~~~~~fD~Vi~~d~~y~~~-----------------------------~~~~l~~~~~~ll~~~g~~~ 178 (221)
. ++.... .....+||+|++|+|+-... .--.++..+.++|+|||++.
T Consensus 316 ~---gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a 392 (544)
T 3khk_A 316 N---ADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMA 392 (544)
T ss_dssp S---CCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEE
T ss_pred c---cchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEE
Confidence 2 222111 12246899999999975310 01147888889999999988
Q ss_pred EEEEec----ChhHHHHHHHHHhcCCeEE
Q 027594 179 LGYEIR----STSVHEQMLQMWKSNFNVK 203 (221)
Q Consensus 179 i~~~~r----~~~~~~~~~~~~~~~f~v~ 203 (221)
+..+.. .......+.+.+-+...++
T Consensus 393 iVlP~g~L~~~~~~~~~iRk~Lle~~~l~ 421 (544)
T 3khk_A 393 LLLANGSMSSNTNNEGEIRKTLVEQDLVE 421 (544)
T ss_dssp EEEETHHHHCCGGGHHHHHHHHHHTTCEE
T ss_pred EEecchhhhcCcchHHHHHHHHHhCCcHh
Confidence 877642 2122345555554444343
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-08 Score=80.66 Aligned_cols=79 Identities=10% Similarity=-0.015 Sum_probs=54.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCE--EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++.+|||||||+|.++. ++ .+.+ |+++|+ +++++.+++++..+ +++++...|.......
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~--------------~~v~~i~~D~~~~~~~ 82 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLG--------------PKLTIYQQDAMTFNFG 82 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTG--------------GGEEEECSCGGGCCHH
T ss_pred CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccC--------------CceEEEECchhhCCHH
Confidence 3467799999999999999 65 4677 999998 56999998876532 2577777655443211
Q ss_pred ccc--CCCccEEEEcccccC
Q 027594 139 KAV--APPFDYIIGTDVVYA 156 (221)
Q Consensus 139 ~~~--~~~fD~Vi~~d~~y~ 156 (221)
... ....+.|++|.+++-
T Consensus 83 ~~~~~~~~~~~vvsNlPY~i 102 (252)
T 1qyr_A 83 ELAEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp HHHHHHTSCEEEEEECCTTT
T ss_pred HhhcccCCceEEEECCCCCc
Confidence 110 123578888877654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.56 E-value=7.7e-07 Score=69.40 Aligned_cols=100 Identities=15% Similarity=0.047 Sum_probs=67.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC------
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE------ 135 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~------ 135 (221)
+.++|||+||| .-++.+|+. +.+|+.+|. ++..+.+++|++.++.. ..++|++...+.+..
T Consensus 30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---------~~~~I~~~~gda~~~~~wg~p 98 (202)
T 3cvo_A 30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA---------EGTEVNIVWTDIGPTGDWGHP 98 (202)
T ss_dssp HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC---------TTCEEEEEECCCSSBCGGGCB
T ss_pred CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---------CCCceEEEEeCchhhhccccc
Confidence 35799999985 677788876 689999997 66899999999987630 024677776553321
Q ss_pred CC------cc--------c-cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 136 DH------IK--------A-VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 136 ~~------~~--------~-~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.. ++ . ...+||+|+...-. ....+..+..+|+|||.+++
T Consensus 99 ~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k-----~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 99 VSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF-----RVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp SSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS-----HHHHHHHHHHHCSSCEEEEE
T ss_pred ccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC-----chhHHHHHHHhcCCCeEEEE
Confidence 10 11 1 13689999976421 12444445688999999855
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.7e-08 Score=80.35 Aligned_cols=121 Identities=8% Similarity=-0.028 Sum_probs=90.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC-CCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-EDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~-~~~~~~ 140 (221)
+.+..+||+-+|||.+++.+.+.+.+++++|. +..++.+++|++.. +++++...|-.. ......
T Consensus 90 ~n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~~--------------~~~~V~~~D~~~~L~~l~~ 155 (283)
T 2oo3_A 90 INLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN--------------KKVYVNHTDGVSKLNALLP 155 (283)
T ss_dssp HSSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT--------------SCEEEECSCHHHHHHHHCS
T ss_pred hcCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCcC--------------CcEEEEeCcHHHHHHHhcC
Confidence 35678999999999999999987778999997 67999999888641 457776644211 111112
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHh--cCCCeEEEEEEEecChhHHHHHHHHHh
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFAL--SGPKTTILLGYEIRSTSVHEQMLQMWK 197 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~l--l~~~g~~~i~~~~r~~~~~~~~~~~~~ 197 (221)
+..+||+|+..+++-.......++..+.+. +.|+|.+.+-++.......+.|.+.++
T Consensus 156 ~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~ 214 (283)
T 2oo3_A 156 PPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMR 214 (283)
T ss_dssp CTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHH
Confidence 235799999866644367888999888774 679999999999888776777877774
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=7.7e-07 Score=72.13 Aligned_cols=143 Identities=15% Similarity=0.063 Sum_probs=84.9
Q ss_pred CcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecch-hhHHHHHHHHHHh
Q 027594 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQI-EVLPLLKRNVEWN 108 (221)
Q Consensus 32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga-~v~~~D~~-~~l~~~~~n~~~n 108 (221)
..+|..+-+++..|.+...+. ...++.+|||||||+|-.+.+++.. ++ +|++.|+. ++..... .
T Consensus 50 ~~~~~YrSRaA~KL~ei~ek~--------~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi-----~ 116 (277)
T 3evf_A 50 VDTGVAVSRGTAKLRWFHERG--------YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPM-----N 116 (277)
T ss_dssp CSSCBCSSTHHHHHHHHHHTT--------SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCC-----C
T ss_pred ccCCCccccHHHHHHHHHHhC--------CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccc-----c
Confidence 445777888999999988874 2346679999999999999988865 55 47777752 2100000 0
Q ss_pred hhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC-----cCHH--HHHHHHHHhcCCC-eEEEEE
Q 027594 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----HLLE--PLLQTIFALSGPK-TTILLG 180 (221)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~-----~~~~--~l~~~~~~ll~~~-g~~~i~ 180 (221)
.. ....++.... ++.+.......+||+|++ |...+. +... .|++.+.+.|+|| |.+++
T Consensus 117 ~~---------~~g~~ii~~~---~~~dv~~l~~~~~DlVls-D~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~- 182 (277)
T 3evf_A 117 VQ---------SLGWNIITFK---DKTDIHRLEPVKCDTLLC-DIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV- 182 (277)
T ss_dssp CC---------BTTGGGEEEE---CSCCTTTSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE-
T ss_pred cC---------cCCCCeEEEe---ccceehhcCCCCccEEEe-cCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE-
Confidence 00 0001222222 121222334678999998 454441 1111 3567778899999 99877
Q ss_pred EEec-ChhHHHHHHHHHhcCCe
Q 027594 181 YEIR-STSVHEQMLQMWKSNFN 201 (221)
Q Consensus 181 ~~~r-~~~~~~~~~~~~~~~f~ 201 (221)
-..+ +......+++.++..|.
T Consensus 183 KVf~pyg~~~~~l~~~lk~~F~ 204 (277)
T 3evf_A 183 KVLAPYMPDVLEKLELLQRRFG 204 (277)
T ss_dssp EESCTTSHHHHHHHHHHHHHHC
T ss_pred EecCCCCccHHHHHHHHHHhcC
Confidence 2223 13335566777776664
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4.5e-06 Score=70.61 Aligned_cols=119 Identities=13% Similarity=0.098 Sum_probs=69.4
Q ss_pred ecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCC
Q 027594 38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 38 ~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
.-++...|.+.+..-...........+|++||||||.+|-.+-.++++|++|+++|...+-+.+. .
T Consensus 185 pSRa~lKL~Ea~~~F~~~~~~~~~l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~----~---------- 250 (375)
T 4auk_A 185 PSRSTLKLEEAFHVFIPADEWDERLANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLM----D---------- 250 (375)
T ss_dssp SCTTHHHHHHHHHHHSCGGGHHHHSCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHH----T----------
T ss_pred CCHHHHHHHHHHHhccchhhhhccCCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhc----c----------
Confidence 35567777775543210000001234789999999999999999999999999999744333222 1
Q ss_pred CCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
.++|++...| .........+||+|++ |+...+.....++.........++.++
T Consensus 251 ----~~~V~~~~~d---~~~~~~~~~~~D~vvs-Dm~~~p~~~~~l~~~wl~~~~~~~aI~ 303 (375)
T 4auk_A 251 ----TGQVTWLRED---GFKFRPTRSNISWMVC-DMVEKPAKVAALMAQWLVNGWCRETIF 303 (375)
T ss_dssp ----TTCEEEECSC---TTTCCCCSSCEEEEEE-CCSSCHHHHHHHHHHHHHTTSCSEEEE
T ss_pred ----CCCeEEEeCc---cccccCCCCCcCEEEE-cCCCChHHhHHHHHHHHhccccceEEE
Confidence 2457766633 2222233468999986 665554444444433333333334433
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.21 E-value=5.3e-06 Score=70.60 Aligned_cols=121 Identities=13% Similarity=-0.049 Sum_probs=72.6
Q ss_pred CCCeEEEeCCCccHHHHHHHH--------h----C-----CEEEEecchh-hHHHHHHHHHHhhhccc--cCCCCCCCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMAL--------L----G-----CNVITTDQIE-VLPLLKRNVEWNTSRIS--QMNPGSDLLG 123 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~--------~----g-----a~v~~~D~~~-~l~~~~~n~~~n~~~~~--~~~~~~~~~~ 123 (221)
+..+|+|||||+|..++.+.. . | .+|.+.|+|. ....+=+++........ ..... ...
T Consensus 52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~--~~~ 129 (374)
T 3b5i_A 52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAA--DGN 129 (374)
T ss_dssp CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC-----CCC
T ss_pred CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccc--cCC
Confidence 457899999999988887721 1 1 2588899854 44444333332110000 00000 001
Q ss_pred ceEEEEEEecCCCCccccCCCccEEEEcccccCCc--------------------------------------CHHHHHH
Q 027594 124 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------------------------LLEPLLQ 165 (221)
Q Consensus 124 ~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~--------------------------------------~~~~l~~ 165 (221)
...+....=+.......+.++||+|+++-++++.+ ++..+++
T Consensus 130 ~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~ 209 (374)
T 3b5i_A 130 RSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR 209 (374)
T ss_dssp BCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 11222222233333345678999999999999854 3444677
Q ss_pred HHHHhcCCCeEEEEEEEecCh
Q 027594 166 TIFALSGPKTTILLGYEIRST 186 (221)
Q Consensus 166 ~~~~ll~~~g~~~i~~~~r~~ 186 (221)
...+.|+|||++++....|..
T Consensus 210 ~ra~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 210 ARAAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHHHEEEEEEEEEEEEECCC
T ss_pred HHHHHhCCCCEEEEEEecCCC
Confidence 889999999999998887753
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-06 Score=63.84 Aligned_cols=55 Identities=22% Similarity=0.266 Sum_probs=42.4
Q ss_pred cccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCcc-HHHHHHHH-hCCEEEEecc-hhhHH
Q 027594 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCG-VAGFGMAL-LGCNVITTDQ-IEVLP 99 (221)
Q Consensus 33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G-~~~l~~a~-~ga~v~~~D~-~~~l~ 99 (221)
..+.+.|+ .|++|+.++. ..+.+|||+|||.| -.+..++. .|..|++||+ +.+++
T Consensus 16 ~~~~~m~e---~LaeYI~~~~---------~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~ 73 (153)
T 2k4m_A 16 PRGSHMWN---DLAVYIIRCS---------GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG 73 (153)
T ss_dssp CCCCHHHH---HHHHHHHHHS---------CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred cchhhHHH---HHHHHHHhcC---------CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence 34555544 5899998763 23569999999999 59999997 8999999997 44444
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.6e-06 Score=65.88 Aligned_cols=136 Identities=11% Similarity=-0.005 Sum_probs=72.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-------C-------CEEEEecc-h---hhHH-----------HHHHHHHHhhhcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-------G-------CNVITTDQ-I---EVLP-----------LLKRNVEWNTSRISQ 114 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-------g-------a~v~~~D~-~---~~l~-----------~~~~n~~~n~~~~~~ 114 (221)
+..+|||+|+|+|+..+.+++. + .+++.+|. + +.+. .++++++..-.....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 4569999999999988876543 2 26888884 5 2333 344444431000000
Q ss_pred C--CCCCCCCCceEEEEEEecCCCCccccC----CCccEEEEccccc---CCcC-HHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 115 M--NPGSDLLGSIQAVELDWGNEDHIKAVA----PPFDYIIGTDVVY---AEHL-LEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 115 ~--~~~~~~~~~v~~~~~dw~~~~~~~~~~----~~fD~Vi~~d~~y---~~~~-~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
. ..-.+...++++...|..+. ++... .+||+|+.. .+- +++. -..+++.+.++|+|||++.. +..
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~--l~~~~~~~~~~~D~iflD-~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t-ysa- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINEL--ISQLDDSLNQKVDAWFLD-GFAPAKNPDMWTQNLFNAMARLARPGGTLAT-FTS- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHH--GGGSCGGGTTCEEEEEEC-SSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE-SCC-
T ss_pred hhheeccCCceEEEEEECcHHHH--HhhcccccCCeEEEEEEC-CCCcccChhhcCHHHHHHHHHHcCCCcEEEE-EeC-
Confidence 0 00000012344444333221 12112 379999984 321 2221 46799999999999999763 221
Q ss_pred ChhHHHHHHHHH-hcCCeEEEecCC
Q 027594 185 STSVHEQMLQMW-KSNFNVKLVPKA 208 (221)
Q Consensus 185 ~~~~~~~~~~~~-~~~f~v~~v~~~ 208 (221)
. ..+...+ ..+|+++.++..
T Consensus 215 a----~~vrr~L~~aGF~v~~~~g~ 235 (257)
T 2qy6_A 215 A----GFVRRGLQEAGFTMQKRKGF 235 (257)
T ss_dssp B----HHHHHHHHHHTEEEEEECCS
T ss_pred C----HHHHHHHHHCCCEEEeCCCC
Confidence 1 1222333 358999877554
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.9e-05 Score=66.18 Aligned_cols=112 Identities=15% Similarity=0.075 Sum_probs=68.8
Q ss_pred CCeEEEeCCCccHHHHHHHHh--------------C---C--EEEEecch--h---hHHHH---HHHHHH-hhhccccCC
Q 027594 65 GKRVIELGAGCGVAGFGMALL--------------G---C--NVITTDQI--E---VLPLL---KRNVEW-NTSRISQMN 116 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~--------------g---a--~v~~~D~~--~---~l~~~---~~n~~~-n~~~~~~~~ 116 (221)
..+|+||||++|..++.+... + . +|++.|++ + ....+ .+.+.. ++.
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~------ 126 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGR------ 126 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCC------
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccC------
Confidence 578999999999988877643 1 2 48889975 2 11222 222211 110
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHH-----------------------------------
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLE----------------------------------- 161 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~----------------------------------- 161 (221)
.....+....=+.+-....+.+++|+|+++-++++.+..+
T Consensus 127 -----~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~ 201 (384)
T 2efj_A 127 -----KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFT 201 (384)
T ss_dssp -----CTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHH
T ss_pred -----CCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHH
Confidence 0112333332233333345678999999999999844332
Q ss_pred ----HHHHHHHHhcCCCeEEEEEEEecChh
Q 027594 162 ----PLLQTIFALSGPKTTILLGYEIRSTS 187 (221)
Q Consensus 162 ----~l~~~~~~ll~~~g~~~i~~~~r~~~ 187 (221)
.+++...+.|+|||++++....|...
T Consensus 202 ~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 202 KDFTTFLRIHSEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEECCCTT
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEecCCCc
Confidence 12555678899999999988776553
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=98.06 E-value=8.1e-06 Score=67.32 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=42.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n 108 (221)
.+|..|||++||+|..+++++++|.+++++|+ +++++.+++|++..
T Consensus 234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999998 56999999998764
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.00 E-value=4.6e-06 Score=67.70 Aligned_cols=141 Identities=14% Similarity=0.005 Sum_probs=82.0
Q ss_pred cceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCC-EEEEecch-hhHHHHHHHHHHhhhc
Q 027594 35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQI-EVLPLLKRNVEWNTSR 111 (221)
Q Consensus 35 g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~-~ga-~v~~~D~~-~~l~~~~~n~~~n~~~ 111 (221)
|..+-+++..|.+...+. ...++.+|||||||+|-.+-+++. .++ +|+++|+. ++......
T Consensus 69 g~YrSRAAfKL~ei~eK~--------~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-------- 132 (282)
T 3gcz_A 69 GIAVSRGSAKLRWMEERG--------YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-------- 132 (282)
T ss_dssp SBCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC--------
T ss_pred CCEecHHHHHHHHHHHhc--------CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc--------
Confidence 666778899999887754 234677999999999999999885 465 48888863 21100000
Q ss_pred cccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc-----CH--HHHHHHHHHhcCCC--eEEEEEEE
Q 027594 112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-----LL--EPLLQTIFALSGPK--TTILLGYE 182 (221)
Q Consensus 112 ~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~-----~~--~~l~~~~~~ll~~~--g~~~i~~~ 182 (221)
. . ....++.... ...+.......++|+|++ |...+.. .. -.|+..+.+.|+|| |.+++=.-
T Consensus 133 ~---~---~~g~~ii~~~---~~~dv~~l~~~~~DvVLS-DmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 133 R---T---TLGWNLIRFK---DKTDVFNMEVIPGDTLLC-DIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp C---C---BTTGGGEEEE---CSCCGGGSCCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred c---c---cCCCceEEee---CCcchhhcCCCCcCEEEe-cCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 0 0 0011222211 111112234578999997 5554411 11 13567777889999 98766222
Q ss_pred ecChhHHHHHHHHHhcCCe
Q 027594 183 IRSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 183 ~r~~~~~~~~~~~~~~~f~ 201 (221)
.-+......+++.++..|.
T Consensus 203 ~pyg~~~~~l~~~lk~~F~ 221 (282)
T 3gcz_A 203 CPYTPLIMEELSRLQLKHG 221 (282)
T ss_dssp CCCSHHHHHHHHHHHHHHC
T ss_pred cCCCccHHHHHHHHHHhcC
Confidence 2113334566677776664
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-05 Score=68.22 Aligned_cols=112 Identities=11% Similarity=0.024 Sum_probs=73.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh------------C------CEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL------------G------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGS 124 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~------------g------a~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (221)
+..+|+||||++|..++.+... + .+|++.|+|. ....+-+++..... ...
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~-----------~~~ 119 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND-----------VDG 119 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS-----------CTT
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc-----------cCC
Confidence 3468999999999777765432 2 2488999854 66666555433110 001
Q ss_pred eEEEEEEecCCCCccccCCCccEEEEcccccCCcC---------------------------------HHHHHHHHHHhc
Q 027594 125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL---------------------------------LEPLLQTIFALS 171 (221)
Q Consensus 125 v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~---------------------------------~~~l~~~~~~ll 171 (221)
..+....=+..-....+.+++|+|+++-.+++.+. +..+++...+-|
T Consensus 120 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL 199 (359)
T 1m6e_X 120 VCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEV 199 (359)
T ss_dssp CEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHB
T ss_pred CEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23333333444444456789999999999987433 234578888899
Q ss_pred CCCeEEEEEEEecCh
Q 027594 172 GPKTTILLGYEIRST 186 (221)
Q Consensus 172 ~~~g~~~i~~~~r~~ 186 (221)
+|||++++....|..
T Consensus 200 ~pGG~mvl~~~gr~~ 214 (359)
T 1m6e_X 200 VPGGRMVLTILGRRS 214 (359)
T ss_dssp CTTCEEEEEEEECSS
T ss_pred cCCceEEEEEecCCC
Confidence 999999998877654
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.97 E-value=9.6e-05 Score=60.72 Aligned_cols=129 Identities=13% Similarity=0.074 Sum_probs=83.3
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHH-hhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++||=||-|.|...-.+++. ..+|+++|+ +.+++.+++-+.. +... -..+++++...|-... +.
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~--------~~dpRv~v~~~Dg~~~--l~ 152 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGS--------YDDPRFKLVIDDGVNF--VN 152 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTG--------GGCTTEEEEESCTTTT--TS
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccc--------cCCCcEEEEechHHHH--Hh
Confidence 4579999999999998888875 347999998 5699999886543 2110 0135788877554433 23
Q ss_pred ccCCCccEEEEc--ccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHhcCCeE
Q 027594 140 AVAPPFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNV 202 (221)
Q Consensus 140 ~~~~~fD~Vi~~--d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~r--~~~~~~~~~~~~~~~f~v 202 (221)
...++||+||.. |+..... .-..+.+.+.+.|+|+|++..-.... .........+.+++.|..
T Consensus 153 ~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~ 221 (294)
T 3o4f_A 153 QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSD 221 (294)
T ss_dssp CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSE
T ss_pred hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCc
Confidence 346789999974 2222111 13568899999999999977633321 223344445555555543
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.7e-05 Score=62.81 Aligned_cols=142 Identities=13% Similarity=0.062 Sum_probs=84.4
Q ss_pred cccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecchh-hHHHHHHHHHHhh
Q 027594 33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQIE-VLPLLKRNVEWNT 109 (221)
Q Consensus 33 ~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga-~v~~~D~~~-~l~~~~~n~~~n~ 109 (221)
.+|...-+++..|.+...++ ...++++||||||++|-.+-++++. ++ .|+++|+.. +.. .-
T Consensus 58 ~~g~yrSRaa~KL~ei~ek~--------l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~--------~P 121 (300)
T 3eld_A 58 DVGISVSRGAAKIRWLHERG--------YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHE--------KP 121 (300)
T ss_dssp SSCCCSSTTHHHHHHHHHHT--------SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSC--------CC
T ss_pred cCCCccchHHHHHHHHHHhC--------CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccc--------cc
Confidence 34667778899999888763 2347899999999999999999964 55 488888632 100 00
Q ss_pred hccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC-------HHHHHHHHHHhcCCC-eEEEEEE
Q 027594 110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-------LEPLLQTIFALSGPK-TTILLGY 181 (221)
Q Consensus 110 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~-------~~~l~~~~~~ll~~~-g~~~i~~ 181 (221)
.... ....++.... ...+.......++|+|++ |...+... ...|+..+.+.|+|| |.+++=
T Consensus 122 ~~~~------~~~~~iv~~~---~~~di~~l~~~~~DlVls-D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K- 190 (300)
T 3eld_A 122 IHMQ------TLGWNIVKFK---DKSNVFTMPTEPSDTLLC-DIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK- 190 (300)
T ss_dssp CCCC------BTTGGGEEEE---CSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE-
T ss_pred cccc------ccCCceEEee---cCceeeecCCCCcCEEee-cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE-
Confidence 0000 0001222111 111112223568999998 55554221 134677778889999 997663
Q ss_pred Eec-ChhHHHHHHHHHhcCCe
Q 027594 182 EIR-STSVHEQMLQMWKSNFN 201 (221)
Q Consensus 182 ~~r-~~~~~~~~~~~~~~~f~ 201 (221)
..+ .......++..++..|.
T Consensus 191 vF~~yG~~~~~ll~~lk~~F~ 211 (300)
T 3eld_A 191 VLAPYHPDVIEKLERLQLRFG 211 (300)
T ss_dssp ESSTTSHHHHHHHHHHHHHHC
T ss_pred eccccCccHHHHHHHHHHhCC
Confidence 223 13334566677766664
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.8e-05 Score=64.35 Aligned_cols=138 Identities=17% Similarity=0.138 Sum_probs=87.8
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
.+|.+.+..|. ..+|.+|||+.||.|-=++.+|.++. .|++.|. +.-+..+++|+++.+....
T Consensus 135 ~aS~l~~~~L~-----------~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~--- 200 (359)
T 4fzv_A 135 AASLLPVLALG-----------LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEI--- 200 (359)
T ss_dssp GGGHHHHHHHC-----------CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTT---
T ss_pred HHHHHHHHHhC-----------CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhh---
Confidence 46666666553 23688999999999988888887765 5999998 4588899999988764100
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEccccc-------C-Cc----------------CHHHHHHHHHHhcC
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVY-------A-EH----------------LLEPLLQTIFALSG 172 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y-------~-~~----------------~~~~l~~~~~~ll~ 172 (221)
....++.+...|-.... ......||.|+...+.- . .. .-..++....++++
T Consensus 201 ---~~~~~v~v~~~D~~~~~--~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk 275 (359)
T 4fzv_A 201 ---RDGNQVRVTSWDGRKWG--ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK 275 (359)
T ss_dssp ---TTSSSEEEECCCGGGHH--HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEE
T ss_pred ---ccCCceEEEeCchhhcc--hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 01235666554322211 12356899998754311 1 00 12346777778899
Q ss_pred CCeEEEEEEEecC----hhHHHHHHHHH
Q 027594 173 PKTTILLGYEIRS----TSVHEQMLQMW 196 (221)
Q Consensus 173 ~~g~~~i~~~~r~----~~~~~~~~~~~ 196 (221)
|||+++.+...-. ..+.+.|++..
T Consensus 276 pGG~LVYsTCSl~~~ENE~vV~~~L~~~ 303 (359)
T 4fzv_A 276 PGGHVVYSTCSLSHLQNEYVVQGAIELL 303 (359)
T ss_dssp EEEEEEEEESCCCTTTTHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCchhhCHHHHHHHHHhC
Confidence 9999877654322 34566666654
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00027 Score=62.88 Aligned_cols=127 Identities=14% Similarity=0.044 Sum_probs=77.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---------------CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceE
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ 126 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~---------------ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~ 126 (221)
..+.+|+|-.||||.+-+.+... ...+++.|. +.+...++.|+...+.. ...
T Consensus 216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~------------~~~ 283 (530)
T 3ufb_A 216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE------------YPR 283 (530)
T ss_dssp CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS------------CCE
T ss_pred CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc------------ccc
Confidence 35679999999999776665532 235899998 56999999999887751 122
Q ss_pred EEEEEecCCCCcc----ccCCCccEEEEcccccCCc----------------CHHHHHHHHHHhcC-------CCeEEEE
Q 027594 127 AVELDWGNEDHIK----AVAPPFDYIIGTDVVYAEH----------------LLEPLLQTIFALSG-------PKTTILL 179 (221)
Q Consensus 127 ~~~~dw~~~~~~~----~~~~~fD~Vi~~d~~y~~~----------------~~~~l~~~~~~ll~-------~~g~~~i 179 (221)
+ .+++....+ ....+||+|++|||+-... .--.++..+.+.|+ |||++.+
T Consensus 284 I---~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av 360 (530)
T 3ufb_A 284 I---DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV 360 (530)
T ss_dssp E---ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred c---cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence 2 233332211 1235799999999973211 11234555666665 7999888
Q ss_pred EEEec---ChhHHHHHHHHHhcCCeEEE
Q 027594 180 GYEIR---STSVHEQMLQMWKSNFNVKL 204 (221)
Q Consensus 180 ~~~~r---~~~~~~~~~~~~~~~f~v~~ 204 (221)
..+.. .......+.+.+-+.+.++.
T Consensus 361 VlP~g~Lf~~~~~~~iRk~Lle~~~l~a 388 (530)
T 3ufb_A 361 VVPNGTLFSDGISARIKEELLKNFNLHT 388 (530)
T ss_dssp EEEHHHHHCCTHHHHHHHHHHHHSEEEE
T ss_pred EecchhhhccchHHHHHHHHhhcCEEEE
Confidence 77642 11223345555544444443
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.84 E-value=6.7e-05 Score=61.39 Aligned_cols=104 Identities=12% Similarity=-0.003 Sum_probs=70.7
Q ss_pred CCeEEEeCCCccHHHHHHHHh-------CCEEEEecc-h--------------------------hhHHHHHHHHHHhhh
Q 027594 65 GKRVIELGAGCGVAGFGMALL-------GCNVITTDQ-I--------------------------EVLPLLKRNVEWNTS 110 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~-------ga~v~~~D~-~--------------------------~~l~~~~~n~~~n~~ 110 (221)
.++|||+|+..|.-++.+|.. +.+|+++|. . ..++.+++|++..++
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 459999999999988887642 567988883 1 146778889988765
Q ss_pred ccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. .++|+++..+..+... .....+||+|...-=.| ......+..+..+|+|||.+++-.
T Consensus 187 ~----------~~~I~li~Gda~etL~-~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD 244 (282)
T 2wk1_A 187 L----------DEQVRFLPGWFKDTLP-TAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDD 244 (282)
T ss_dssp C----------STTEEEEESCHHHHST-TCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred C----------cCceEEEEeCHHHHHh-hCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcC
Confidence 1 2678888855533221 12246899998642122 234467788888999999887643
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.80 E-value=4.1e-05 Score=61.85 Aligned_cols=48 Identities=19% Similarity=0.101 Sum_probs=41.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhh
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
.+|..|||.+||+|..+++++++|.+++++|+ +.+++.+++|++.+++
T Consensus 211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~ 259 (260)
T 1g60_A 211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI 259 (260)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence 46789999999999999999999999999998 5699999999987753
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00026 Score=57.75 Aligned_cols=56 Identities=21% Similarity=0.138 Sum_probs=44.0
Q ss_pred CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCCE-EEEecc
Q 027594 31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ 94 (221)
Q Consensus 31 ~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~-~ga~-v~~~D~ 94 (221)
...+|..+-+++..|.+...+. ...++.+||||||++|-.+-+++. .|++ |+++|.
T Consensus 69 ~~~~g~y~SR~~~KL~ei~~~~--------~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdv 126 (321)
T 3lkz_A 69 NVTGGHPVSRGTAKLRWLVERR--------FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTK 126 (321)
T ss_dssp CCSSCCCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECC
T ss_pred cCcCCCccchHHHHHHHHHHhc--------CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEc
Confidence 3456777888899998877764 344677999999999999997774 5765 999996
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0011 Score=53.11 Aligned_cols=136 Identities=14% Similarity=0.046 Sum_probs=75.6
Q ss_pred CcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCE----EEEecc--hhhHHHHHH
Q 027594 32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCN----VITTDQ--IEVLPLLKR 103 (221)
Q Consensus 32 ~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~----v~~~D~--~~~l~~~~~ 103 (221)
..+|...-+++..|.+.-.+. ...++.+||||||+.|-.+.+++.. -.. |++.|. ..+...-
T Consensus 49 ~~~g~yRSRAayKL~EIdeK~--------likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~~-- 118 (269)
T 2px2_A 49 KVGGHPVSRGTAKLRWLVERR--------FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQS-- 118 (269)
T ss_dssp -CCSCCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCCS--
T ss_pred CcCCCcccHHHHHHHHHHHcC--------CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcccC--
Confidence 345666667788887655543 2446889999999999999999976 223 445552 1000000
Q ss_pred HHHHhhhccccCCCCCCCCCceEEEEE-EecCCCCccccCCCccEEEEcccccCCc--------CHHHHHHHHHHhcCCC
Q 027594 104 NVEWNTSRISQMNPGSDLLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPK 174 (221)
Q Consensus 104 n~~~n~~~~~~~~~~~~~~~~v~~~~~-dw~~~~~~~~~~~~fD~Vi~~d~~y~~~--------~~~~l~~~~~~ll~~~ 174 (221)
.+ -.-+.+... |..+ ....++|+|++ |.--+.. .+. .+..+.+.|+||
T Consensus 119 ----~G------------v~~i~~~~G~Df~~-----~~~~~~DvVLS-DMAPnSG~~~vD~~Rs~~-aL~~A~~~Lk~g 175 (269)
T 2px2_A 119 ----YG------------WNIVTMKSGVDVFY-----KPSEISDTLLC-DIGESSPSAEIEEQRTLR-ILEMVSDWLSRG 175 (269)
T ss_dssp ----TT------------GGGEEEECSCCGGG-----SCCCCCSEEEE-CCCCCCSCHHHHHHHHHH-HHHHHHHHHTTC
T ss_pred ----CC------------ceEEEeeccCCccC-----CCCCCCCEEEe-CCCCCCCccHHHHHHHHH-HHHHHHHHhhcC
Confidence 00 011233322 4332 12458999996 4433311 112 455666789999
Q ss_pred e-EEEEEEEecCh--hHHHHHHHHHhcCCeE
Q 027594 175 T-TILLGYEIRST--SVHEQMLQMWKSNFNV 202 (221)
Q Consensus 175 g-~~~i~~~~r~~--~~~~~~~~~~~~~f~v 202 (221)
| .+++ +.-.. ....++++.+++.|.-
T Consensus 176 G~~Fvv--KVFqg~~~~~~~~l~~lk~~F~~ 204 (269)
T 2px2_A 176 PKEFCI--KILCPYMPKVIEKLESLQRRFGG 204 (269)
T ss_dssp CSEEEE--EESCTTSHHHHHHHHHHHHHHCC
T ss_pred CcEEEE--EECCCCchHHHHHHHHHHHHcCC
Confidence 9 6655 33323 3344556666665533
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00012 Score=62.02 Aligned_cols=132 Identities=15% Similarity=0.072 Sum_probs=77.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-ccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~ 140 (221)
+.++||=||-|.|...-.+.+... +|+++|+ +.+++.+++-+...... .-.....+++++...|....-. ...
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~----~~d~pr~~rv~vii~Da~~fl~~~~~ 280 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGD----VLDNLKGDCYQVLIEDCIPVLKRYAK 280 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC--------CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhh----hhccccccceeeehHHHHHHHHhhhh
Confidence 458999999999998888877644 6999998 56999998754321100 0000012356666533221110 012
Q ss_pred cCCCccEEEEccccc---CC--------cCHHHHHHHHHHhcCCCeEEEEEEE-ecChhHHHHHHHHHhcCC
Q 027594 141 VAPPFDYIIGTDVVY---AE--------HLLEPLLQTIFALSGPKTTILLGYE-IRSTSVHEQMLQMWKSNF 200 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y---~~--------~~~~~l~~~~~~ll~~~g~~~i~~~-~r~~~~~~~~~~~~~~~f 200 (221)
..++||+||.. +.- .. -.-..+++.+.+.|+|+|+++.=.. ....+....+.+.+++.|
T Consensus 281 ~~~~yDvIIvD-l~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF 351 (381)
T 3c6k_A 281 EGREFDYVIND-LTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLY 351 (381)
T ss_dssp HTCCEEEEEEE-CCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSS
T ss_pred ccCceeEEEEC-CCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhC
Confidence 34689999974 211 10 0125678889999999999765222 222233455566666655
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0033 Score=53.36 Aligned_cols=137 Identities=16% Similarity=0.130 Sum_probs=86.8
Q ss_pred eEEEEeeCCC-CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecchhhHH
Q 027594 21 HQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLP 99 (221)
Q Consensus 21 ~~~~i~~~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~~~l~ 99 (221)
+.+++...|. ......+.|+++- +||..+.. ....+.+||.|+.+-|.++..++..+. ...+|.--+..
T Consensus 3 ~~~~l~r~p~~~~~~~l~a~da~d---~~ll~~~~------~~~~~~~~~~~~d~~gal~~~~~~~~~-~~~~ds~~~~~ 72 (375)
T 4dcm_A 3 RSLTLQRFPATDDVNPLQAWEAAD---EYLLQQLD------DTEIRGPVLILNDAFGALSCALAEHKP-YSIGDSYISEL 72 (375)
T ss_dssp TTCCCCCSSCCCSSCSCCSCCHHH---HHHHHTTT------TCCCCSCEEEECCSSSHHHHHTGGGCC-EEEESCHHHHH
T ss_pred CceeEEECCCCCCCCCCCccchHH---HHHHHhhh------hccCCCCEEEECCCCCHHHHhhccCCc-eEEEhHHHHHH
Confidence 3455666675 5567789999865 46665531 112456899999999999998876544 33357323557
Q ss_pred HHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 100 LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 100 ~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.++.|++.|++. .+.+++.. ..+ .....||+|+.--+ -..+.+...+..+...|++++.+++
T Consensus 73 ~~~~n~~~~~~~----------~~~~~~~~--~~~-----~~~~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~~ 134 (375)
T 4dcm_A 73 ATRENLRLNGID----------ESSVKFLD--STA-----DYPQQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRIIA 134 (375)
T ss_dssp HHHHHHHHTTCC----------GGGSEEEE--TTS-----CCCSSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEEEE
T ss_pred HHHHHHHHcCCC----------ccceEecc--ccc-----ccccCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 788999999862 12355432 111 23568999986322 2233344555556666889999988
Q ss_pred EEEecC
Q 027594 180 GYEIRS 185 (221)
Q Consensus 180 ~~~~r~ 185 (221)
+...+.
T Consensus 135 ~g~~~~ 140 (375)
T 4dcm_A 135 GAKARD 140 (375)
T ss_dssp EEEGGG
T ss_pred Eecccc
Confidence 776654
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00026 Score=57.67 Aligned_cols=41 Identities=24% Similarity=0.184 Sum_probs=36.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHH
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~ 103 (221)
.++..+||.+||.|-.+..+++.+.+|+++|. +++++.+++
T Consensus 21 ~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 21 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG 62 (285)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 36779999999999999999988889999998 669998887
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00093 Score=56.85 Aligned_cols=74 Identities=22% Similarity=0.168 Sum_probs=51.5
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc---
Q 027594 66 KRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA--- 140 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~--- 140 (221)
.+||||.||+|.+++.+.+.|.+ |.++|+ +.+++..+.|.. ...+...|..+......
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~-----------------~~~~~~~DI~~~~~~~~~~~ 65 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP-----------------RSLHVQEDVSLLNAEIIKGF 65 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT-----------------TSEEECCCGGGCCHHHHHHH
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC-----------------CCceEecChhhcCHHHHHhh
Confidence 58999999999999999999998 568998 558777777632 22334444443321111
Q ss_pred --cCCCccEEEEcccccC
Q 027594 141 --VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 141 --~~~~fD~Vi~~d~~y~ 156 (221)
....+|+|+++++...
T Consensus 66 ~~~~~~~D~i~ggpPCQ~ 83 (376)
T 3g7u_A 66 FKNDMPIDGIIGGPPCQG 83 (376)
T ss_dssp HCSCCCCCEEEECCCCCT
T ss_pred cccCCCeeEEEecCCCCC
Confidence 2457999999988543
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00034 Score=58.82 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=66.9
Q ss_pred CeEEEeCCCccHHHHHHHHhC--CE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 66 KRVIELGAGCGVAGFGMALLG--CN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~g--a~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.+||||.||+|.+++.+.+.| ++ |.++|. +.+++..+.|... ..+...|..+.......
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----------------~~~~~~Di~~~~~~~~~ 65 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------------TQLLAKTIEGITLEEFD 65 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------------SCEECSCGGGCCHHHHH
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----------------cccccCCHHHccHhHcC
Confidence 589999999999999999999 55 788998 5588888877532 12223233322111011
Q ss_pred CCCccEEEEcccccCCcC----------HHHHHHHHHHhc---C--CCeEEEEEEEecC---hhHHHHHHHHHh-cCCeE
Q 027594 142 APPFDYIIGTDVVYAEHL----------LEPLLQTIFALS---G--PKTTILLGYEIRS---TSVHEQMLQMWK-SNFNV 202 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~----------~~~l~~~~~~ll---~--~~g~~~i~~~~r~---~~~~~~~~~~~~-~~f~v 202 (221)
...+|+|+++++....+. ...|+..+.+++ + |. +++..-... ....+.+++.++ .++.+
T Consensus 66 ~~~~D~l~~gpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~~~P~--~~~~ENV~~l~~~~~~~~i~~~l~~~GY~v 143 (343)
T 1g55_A 66 RLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEVSSTRDLLIQTIENCGFQY 143 (343)
T ss_dssp HHCCSEEEECCC------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGGSHHHHHHHHHHHHTTEEE
T ss_pred cCCcCEEEEcCCCcchhhcCCcCCccCccchHHHHHHHHHHHhcCCCC--EEEEeCCccccCHHHHHHHHHHHHHCCCee
Confidence 126899999988432211 112444444443 3 43 333333332 234566666664 46766
Q ss_pred E
Q 027594 203 K 203 (221)
Q Consensus 203 ~ 203 (221)
.
T Consensus 144 ~ 144 (343)
T 1g55_A 144 Q 144 (343)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0015 Score=54.57 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=38.4
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHH
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~ 105 (221)
+....+.++|||.||+|.+++.+.+.|.+ |.++|. +.+++..+.|.
T Consensus 6 ~~~~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~ 53 (327)
T 2c7p_A 6 DKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF 53 (327)
T ss_dssp SCTTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred ccccCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc
Confidence 34456789999999999999999999998 677998 55888888775
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0068 Score=49.54 Aligned_cols=125 Identities=19% Similarity=0.154 Sum_probs=68.9
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCc--c--HHHHHHHHh---CCEEEEecchhhHHHHHHHHHHhhhccccCC
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC--G--VAGFGMALL---GCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~--G--~~~l~~a~~---ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
-|.+||.+.. ....-|.+|||||||+ | --+.++.+. |+.|+++|+.++..
T Consensus 95 qlcqyl~~~~------~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s----------------- 151 (344)
T 3r24_A 95 QLCQYLNTLT------LAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS----------------- 151 (344)
T ss_dssp HHHHHHTTSC------CCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------------
T ss_pred HHHHHhcccc------EeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------------
Confidence 4666664321 2334688999999843 2 223344444 45799999744211
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC------------CcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA------------EHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~------------~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
...+. +..|.. .. ....+||+||+ |..-+ ....+..+..+.+.|+|||.+++=....
T Consensus 152 -----da~~~-IqGD~~---~~-~~~~k~DLVIS-DMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG 220 (344)
T 3r24_A 152 -----DADST-LIGDCA---TV-HTANKWDLIIS-DMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 220 (344)
T ss_dssp -----SSSEE-EESCGG---GE-EESSCEEEEEE-CCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred -----CCCeE-EEcccc---cc-ccCCCCCEEEe-cCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence 01122 453321 11 22578999996 44332 1135566677788899999987733322
Q ss_pred ChhHHHHHHHHHhcCCeEEEe
Q 027594 185 STSVHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 185 ~~~~~~~~~~~~~~~f~v~~v 205 (221)
.. ..++..+++.|....+
T Consensus 221 sg---~~~L~~lrk~F~~VK~ 238 (344)
T 3r24_A 221 SW---NADLYKLMGHFSWWTA 238 (344)
T ss_dssp SC---CHHHHHHHTTEEEEEE
T ss_pred CC---HHHHHHHHhhCCeEEE
Confidence 22 2344445567755433
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00042 Score=71.72 Aligned_cols=101 Identities=17% Similarity=0.117 Sum_probs=45.1
Q ss_pred CCCeEEEeCCCccHHHHHH-HHhC------CEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 64 KGKRVIELGAGCGVAGFGM-ALLG------CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~-a~~g------a~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
+..+|||+|+|+|.....+ ..++ .++|+||++ ...+.+++.++.-. +. ...|...
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d---------------i~--~~~~d~~ 1302 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH---------------VT--QGQWDPA 1302 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT---------------EE--EECCCSS
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc---------------cc--ccccccc
Confidence 4569999999998543322 2222 268999984 45555555543311 11 1122111
Q ss_pred CCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 136 DHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 136 ~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.........||+||++.+++...+....+..+.++|+|||.+++..
T Consensus 1303 ~~~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A 1303 NPAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp CCCC-----CCEEEEECC--------------------CCEEEEEE
T ss_pred ccccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence 1101124579999999999888888889999999999999987744
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0088 Score=51.33 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=39.4
Q ss_pred CCCCeEEEeCCCccHHHHHHH-HhC---CEEEEecc-hhhHHHHHHHHHH
Q 027594 63 LKGKRVIELGAGCGVAGFGMA-LLG---CNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a-~~g---a~v~~~D~-~~~l~~~~~n~~~ 107 (221)
.++..|+|+||+.|..++.++ +.+ ++|++.+. +++.+.+++|++.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence 477899999999999999887 543 57999996 7899999999998
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.02 Score=47.65 Aligned_cols=122 Identities=11% Similarity=0.026 Sum_probs=71.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC--E-E-EEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC--N-V-ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga--~-v-~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
+..+++||.||.|.+++.+.+.|. + | .++|+ +.+.+..+.|.... +...|..+....
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------------------~~~~DI~~~~~~ 70 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------------------VQVKNLDSISIK 70 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------------------CBCCCTTTCCHH
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------------------cccCChhhcCHH
Confidence 345899999999999999999884 6 5 58998 45887777775321 112222222111
Q ss_pred cccCCCccEEEEcccccCC------------cCHHHHHHHHHH-hcCC---CeEEEEEEEecC---hhHHHHHHHHHhc-
Q 027594 139 KAVAPPFDYIIGTDVVYAE------------HLLEPLLQTIFA-LSGP---KTTILLGYEIRS---TSVHEQMLQMWKS- 198 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~------------~~~~~l~~~~~~-ll~~---~g~~~i~~~~r~---~~~~~~~~~~~~~- 198 (221)
......+|+++++++--.. +....|+..+.+ +++. ...+++..-... ....+.+.+.+++
T Consensus 71 ~i~~~~~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~ 150 (327)
T 3qv2_A 71 QIESLNCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKN 150 (327)
T ss_dssp HHHHTCCCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHT
T ss_pred HhccCCCCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhC
Confidence 1112368999998774433 122346666666 5432 244555444333 2345666666643
Q ss_pred CCeEE
Q 027594 199 NFNVK 203 (221)
Q Consensus 199 ~f~v~ 203 (221)
++.+.
T Consensus 151 GY~v~ 155 (327)
T 3qv2_A 151 QYYIK 155 (327)
T ss_dssp TCEEE
T ss_pred CCEEE
Confidence 66663
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0065 Score=50.77 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=68.2
Q ss_pred CeEEEeCCCccHHHHHHHHhCC--E-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 66 KRVIELGAGCGVAGFGMALLGC--N-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga--~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.+++||.||.|.+++.+.+.|. + |.++|. +.+.+..+.|... ..+...|+.+.......
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----------------~~~~~~DI~~~~~~~~~ 66 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----------------TNLLNRNIQQLTPQVIK 66 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------------SCEECCCGGGCCHHHHH
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----------------CceeccccccCCHHHhc
Confidence 4899999999999999998886 5 678998 4577777766421 12233344333221111
Q ss_pred CCCccEEEEcccccCCc----------CHHHHHHHHHHhcCC-C-eEEEEEEEecC---hhHHHHHHHHHhc-CCeE
Q 027594 142 APPFDYIIGTDVVYAEH----------LLEPLLQTIFALSGP-K-TTILLGYEIRS---TSVHEQMLQMWKS-NFNV 202 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~----------~~~~l~~~~~~ll~~-~-g~~~i~~~~r~---~~~~~~~~~~~~~-~f~v 202 (221)
...+|+++++++-...+ ....|+..+.++++. . ..+++..-... ....+.+.+.+++ ++.+
T Consensus 67 ~~~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v 143 (333)
T 4h0n_A 67 KWNVDTILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNFIY 143 (333)
T ss_dssp HTTCCEEEECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEE
T ss_pred cCCCCEEEecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHhCCCeE
Confidence 23689999987754321 111234444444321 1 34445444433 2235566666643 6665
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.05 Score=45.32 Aligned_cols=119 Identities=12% Similarity=0.066 Sum_probs=71.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccc-----cCCCCCC----CCCceEEEEEEe
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRIS-----QMNPGSD----LLGSIQAVELDW 132 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~-----~~~~~~~----~~~~v~~~~~dw 132 (221)
+.+.|+.||||.......+... +.+++=+|.|++++.=++.+..+..... ...+... ..++.+.+..|.
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 3468999999999888888764 4457778888887777766665532100 0000000 124667777665
Q ss_pred cCCCCc----cc--cCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 133 GNEDHI----KA--VAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 133 ~~~~~~----~~--~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.+.... .. ......++++-.+++. ++....+++.+.... |+|.+++....
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEecc
Confidence 543110 11 1234567777666554 567888888888876 67776554443
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.015 Score=47.65 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=50.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEE---EEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNV---ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v---~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+++||.||.|-+++.+.+.|.++ .++|. +.+.+..+.|.. ...+...|..+....
T Consensus 14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----------------~~~~~~~DI~~i~~~ 76 (295)
T 2qrv_A 14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----------------GKIMYVGDVRSVTQK 76 (295)
T ss_dssp CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----------------TCEEEECCGGGCCHH
T ss_pred CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----------------CCceeCCChHHccHH
Confidence 356699999999999999999999864 78898 457776666532 112334444433211
Q ss_pred cc-cCCCccEEEEccccc
Q 027594 139 KA-VAPPFDYIIGTDVVY 155 (221)
Q Consensus 139 ~~-~~~~fD~Vi~~d~~y 155 (221)
.. ....+|+++++++.-
T Consensus 77 ~i~~~~~~Dll~ggpPCQ 94 (295)
T 2qrv_A 77 HIQEWGPFDLVIGGSPCN 94 (295)
T ss_dssp HHHHTCCCSEEEECCCCG
T ss_pred HhcccCCcCEEEecCCCc
Confidence 11 124799999987654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.017 Score=45.74 Aligned_cols=52 Identities=25% Similarity=0.235 Sum_probs=40.7
Q ss_pred cceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHH-hCCE-EEEecc
Q 027594 35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ 94 (221)
Q Consensus 35 g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~-~ga~-v~~~D~ 94 (221)
|..+-+++..|.+...+. ...++.+||||||++|-.+-+++. .|++ |++.|.
T Consensus 57 g~yrSRa~~KL~ei~ek~--------~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdv 110 (267)
T 3p8z_A 57 HHAVSRGSAKLQWFVERN--------MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTK 110 (267)
T ss_dssp SCCSSTHHHHHHHHHHTT--------SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECC
T ss_pred CCccchHHHHHHHHHHhc--------CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEec
Confidence 666677888888776654 344777999999999999997775 5664 999996
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.014 Score=48.32 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=68.3
Q ss_pred CeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
++||||-||.|-+++.+.+.|.+ |.++|+ +.+.+..+.|.. . .+...|..+.... .-.
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~----------------~--~~~~~DI~~i~~~--~~~ 60 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----------------A--KLIKGDISKISSD--EFP 60 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC----------------S--EEEESCGGGCCGG--GSC
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----------------C--CcccCChhhCCHh--hCC
Confidence 47999999999999999999998 567898 558877776631 1 2334344333221 234
Q ss_pred CccEEEEcccccCC----------cCHHHHHHHHHHh---cCCCeEEEEEEEe------cChhHHHHHHHHHh-cCCeE
Q 027594 144 PFDYIIGTDVVYAE----------HLLEPLLQTIFAL---SGPKTTILLGYEI------RSTSVHEQMLQMWK-SNFNV 202 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~----------~~~~~l~~~~~~l---l~~~g~~~i~~~~------r~~~~~~~~~~~~~-~~f~v 202 (221)
..|++++++|.-.. +....|+..+.++ ++|. +++..-. +.....+.+++.+. .++.+
T Consensus 61 ~~D~l~ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk--~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v 137 (331)
T 3ubt_Y 61 KCDGIIGGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI--FFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDV 137 (331)
T ss_dssp CCSEEECCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS--EEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEE
T ss_pred cccEEEecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCe--EEEeeeecccccccccchhhhhhhhhccCCcEE
Confidence 68999998875421 1122344444443 5664 3333332 22234566666664 36655
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.017 Score=47.96 Aligned_cols=60 Identities=22% Similarity=0.174 Sum_probs=45.1
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-h---hhHHHHHHHHHHhh
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I---EVLPLLKRNVEWNT 109 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~---~~l~~~~~n~~~n~ 109 (221)
...|.+++... ...+|..|||-.||+|..++++.++|.+.+++|+ + +.++.+++++...+
T Consensus 228 p~~l~~~~i~~--------~~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 228 PAAVIERLVRA--------LSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp CHHHHHHHHHH--------HSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHH--------hCCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 35566666544 1246789999999999999999999999999998 6 77888887776543
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.014 Score=48.47 Aligned_cols=46 Identities=13% Similarity=0.019 Sum_probs=40.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n 108 (221)
.+|..|||-.||+|..++++.++|.+.+++|+ +..++.+++++...
T Consensus 251 ~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~ 297 (323)
T 1boo_A 251 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN 297 (323)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999998 55888888776543
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.018 Score=48.45 Aligned_cols=42 Identities=12% Similarity=0.133 Sum_probs=35.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHH
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~ 105 (221)
++..|||||.|.|.++..++.. +.+|++++. +..++.++...
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~ 102 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF 102 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence 4579999999999999999975 568999998 45788877654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.094 Score=43.52 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=56.8
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...+|.+||=+|+|. |+.++.+|+ +|++|+++|. ++-++.+++ .+. +.+ . .+.+.
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~~v--~----~~~~~ 230 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGV------------KHF--Y----TDPKQ 230 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTC------------SEE--E----SSGGG
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCC------------Cee--c----CCHHH
Confidence 345788999999986 888777775 5999999996 556665543 231 111 1 12111
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. ...+|+|+-+ .-... .+....++++++|++++..
T Consensus 231 ~---~~~~D~vid~--~g~~~----~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 231 C---KEELDFIIST--IPTHY----DLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp C---CSCEEEEEEC--CCSCC----CHHHHHTTEEEEEEEEECC
T ss_pred H---hcCCCEEEEC--CCcHH----HHHHHHHHHhcCCEEEEEC
Confidence 1 2379999843 32222 3455667889999987653
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.037 Score=46.29 Aligned_cols=99 Identities=13% Similarity=-0.042 Sum_probs=59.3
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEE-----EE
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-----LD 131 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~-----~d 131 (221)
...+|.+||=+|+|. |..++.+|+ +|++ |+++|. ++-++.+++. .. ..+.+.. -+
T Consensus 176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~---------------~~~~~~~~~~~~~~ 239 (363)
T 3m6i_A 176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP---------------EVVTHKVERLSAEE 239 (363)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT---------------TCEEEECCSCCHHH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch---------------hcccccccccchHH
Confidence 345788999999986 888887775 5887 999996 5566666653 11 1111110 00
Q ss_pred ecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 132 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 132 w~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
|.+..........+|+|+-+ . .....+....++++++|++++..
T Consensus 240 ~~~~v~~~t~g~g~Dvvid~--~----g~~~~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 240 SAKKIVESFGGIEPAVALEC--T----GVESSIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp HHHHHHHHTSSCCCSEEEEC--S----CCHHHHHHHHHHSCTTCEEEECC
T ss_pred HHHHHHHHhCCCCCCEEEEC--C----CChHHHHHHHHHhcCCCEEEEEc
Confidence 10000000113579999854 2 12346677778999999987653
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.019 Score=47.94 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=57.1
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=+|+|. |+.++.+|+ +|+ +|+++|. ++-++.+++ .+. + .+ .+..+.+
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa------------~--~v--i~~~~~~ 222 (352)
T 3fpc_A 163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----YGA------------T--DI--INYKNGD 222 (352)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----HTC------------C--EE--ECGGGSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCC------------c--eE--EcCCCcC
Confidence 345788999999986 888887776 588 7999997 445555543 221 1 11 1111111
Q ss_pred C---c--cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 H---I--KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~---~--~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. . ......+|+|+-+ .-. ...+....++|+++|++++.
T Consensus 223 ~~~~v~~~t~g~g~D~v~d~--~g~----~~~~~~~~~~l~~~G~~v~~ 265 (352)
T 3fpc_A 223 IVEQILKATDGKGVDKVVIA--GGD----VHTFAQAVKMIKPGSDIGNV 265 (352)
T ss_dssp HHHHHHHHTTTCCEEEEEEC--SSC----TTHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHcCCCCCCEEEEC--CCC----hHHHHHHHHHHhcCCEEEEe
Confidence 0 0 0113479999843 222 24566777889999987753
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.067 Score=44.98 Aligned_cols=93 Identities=27% Similarity=0.318 Sum_probs=55.3
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..+|.+||-+|+|. |+.++.+|+ +|++|+++|. ++-++.+++ .+. + .+ .+..+.+..
T Consensus 192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa------------~--~v--i~~~~~~~~ 251 (369)
T 1uuf_A 192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGA------------D--EV--VNSRNADEM 251 (369)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTC------------S--EE--EETTCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC------------c--EE--eccccHHHH
Confidence 44788999999986 777777775 6899999996 556666553 221 1 11 111111101
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
......+|+|+-+ .-... .+....++++++|++++.
T Consensus 252 ~~~~~g~Dvvid~--~g~~~----~~~~~~~~l~~~G~iv~~ 287 (369)
T 1uuf_A 252 AAHLKSFDFILNT--VAAPH----NLDDFTTLLKRDGTMTLV 287 (369)
T ss_dssp HTTTTCEEEEEEC--CSSCC----CHHHHHTTEEEEEEEEEC
T ss_pred HHhhcCCCEEEEC--CCCHH----HHHHHHHHhccCCEEEEe
Confidence 1112579999843 22222 244556788899987654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.02 Score=48.16 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=58.2
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||-+|||. |..++.+|+ +|+ +|+++|. ++-++.+++ .+. + .+ ++..+..
T Consensus 187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa------------~--~v--i~~~~~~ 246 (371)
T 1f8f_A 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGA------------T--HV--INSKTQD 246 (371)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTC------------S--EE--EETTTSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC------------C--EE--ecCCccC
Confidence 345788999999987 888887775 688 6999996 445555543 221 1 11 1211111
Q ss_pred C---c-cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 H---I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~---~-~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. . ......+|+|+-+-. ....+....++++++|++++..
T Consensus 247 ~~~~~~~~~~gg~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 247 PVAAIKEITDGGVNFALESTG------SPEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp HHHHHHHHTTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHhcCCCCcEEEECCC------CHHHHHHHHHHHhcCCEEEEeC
Confidence 0 0 011237999985421 2356677788899999987643
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.55 E-value=0.034 Score=46.46 Aligned_cols=93 Identities=20% Similarity=0.222 Sum_probs=56.9
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC---
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--- 134 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~--- 134 (221)
..+|.+||-+|+|. |+.++.+|+ +|+ +|+++|. ++-++.+++ .+. + .+ .+...
T Consensus 169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa------------~--~v--i~~~~~~~ 228 (356)
T 1pl8_A 169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGA------------D--LV--LQISKESP 228 (356)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC------------S--EE--EECSSCCH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC------------C--EE--EcCccccc
Confidence 45788999999986 888887775 688 8999996 445555542 221 1 11 12120
Q ss_pred CC---Ccc-ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 135 ED---HIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 135 ~~---~~~-~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.+ ... .....+|+|+-+ .- ....+....++++++|++++.
T Consensus 229 ~~~~~~i~~~~~~g~D~vid~--~g----~~~~~~~~~~~l~~~G~iv~~ 272 (356)
T 1pl8_A 229 QEIARKVEGQLGCKPEVTIEC--TG----AEASIQAGIYATRSGGTLVLV 272 (356)
T ss_dssp HHHHHHHHHHHTSCCSEEEEC--SC----CHHHHHHHHHHSCTTCEEEEC
T ss_pred chHHHHHHHHhCCCCCEEEEC--CC----ChHHHHHHHHHhcCCCEEEEE
Confidence 00 000 012579999854 21 234567777889999998764
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.062 Score=45.18 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=58.3
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=+|+|. |..++.+|+ +|+ +|+++|. ++-.+.+++ .+. + .+ .+....+
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa------------~--~v--i~~~~~~ 238 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGA------------T--AT--VDPSAGD 238 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTC------------S--EE--ECTTSSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCC------------C--EE--ECCCCcC
Confidence 345788999999986 777777775 588 7999996 445555543 232 1 11 1111111
Q ss_pred C---cc----ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 H---IK----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~---~~----~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. .. .....+|+|+-+ . .....+....++++++|++++..
T Consensus 239 ~~~~i~~~~~~~~gg~Dvvid~--~----G~~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 239 VVEAIAGPVGLVPGGVDVVIEC--A----GVAETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp HHHHHHSTTSSSTTCEEEEEEC--S----CCHHHHHHHHHHEEEEEEEEECS
T ss_pred HHHHHHhhhhccCCCCCEEEEC--C----CCHHHHHHHHHHhccCCEEEEEe
Confidence 0 00 112379999854 1 22456777788899999987653
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.1 Score=43.67 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=57.8
Q ss_pred CCCeEEEeC-CCc-cHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC--
Q 027594 64 KGKRVIELG-AGC-GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-- 136 (221)
Q Consensus 64 ~~~~vLelG-cG~-G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~-- 136 (221)
+|.+||=.| +|. |..++.+|+. |++|+++|. ++-++.+++ .+. +. + .+..+..
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGa------------d~--v--i~~~~~~~~ 230 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGA------------HH--V--IDHSKPLAA 230 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTC------------SE--E--ECTTSCHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCC------------CE--E--EeCCCCHHH
Confidence 678999999 776 9999988874 789999997 455555543 221 11 1 1111110
Q ss_pred Cc-cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 HI-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~~-~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.. ......+|+|+-+ ..-...+....++++++|++++.
T Consensus 231 ~v~~~~~~g~Dvvid~------~g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 231 EVAALGLGAPAFVFST------THTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp HHHTTCSCCEEEEEEC------SCHHHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHhcCCCceEEEEC------CCchhhHHHHHHHhcCCCEEEEE
Confidence 00 1123578988854 22345677888899999998765
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.032 Score=47.51 Aligned_cols=41 Identities=29% Similarity=0.368 Sum_probs=31.4
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK 102 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~ 102 (221)
..+|.+||=+|+|. |+.++.+|+ +|+ +|+++|. ++-++.++
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~ 255 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK 255 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 45788999999986 777777775 588 8999996 44555554
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.055 Score=44.80 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=31.8
Q ss_pred CCCCCCeEEEeCCCc--cHHHHHHHH-hCCEEEEecc-hhhHHHHHH
Q 027594 61 SKLKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 61 ~~~~~~~vLelGcG~--G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~ 103 (221)
...+|.+||-+|+|. |...+.+++ .|++|+++|. ++-++.+++
T Consensus 141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~ 187 (340)
T 3gms_A 141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR 187 (340)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 445789999999974 677766664 6999999996 456666654
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.1 Score=43.44 Aligned_cols=93 Identities=19% Similarity=0.154 Sum_probs=57.0
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC-CCC
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-EDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~-~~~ 137 (221)
..+|.+||-+|+|. |..++.+|+ +|++|+++|. ++-++.+++ .+. + .+ .+..+ .+.
T Consensus 166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~--~~--~~~~~~~~~ 225 (352)
T 1e3j_A 166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGA------------D--VT--LVVDPAKEE 225 (352)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC------------S--EE--EECCTTTSC
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC------------C--EE--EcCcccccH
Confidence 44788999999986 777777775 6899999996 445555542 221 1 11 12221 111
Q ss_pred ---cc--cc---CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 ---IK--AV---APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 ---~~--~~---~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.. .. ...+|+|+-+-. ....+....++++++|++++.
T Consensus 226 ~~~i~~~~~~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 270 (352)
T 1e3j_A 226 ESSIIERIRSAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLV 270 (352)
T ss_dssp HHHHHHHHHHHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEEC
T ss_pred HHHHHHHhccccCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 00 01 247999985421 234567777889999998764
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.48 Score=38.66 Aligned_cols=93 Identities=24% Similarity=0.219 Sum_probs=55.7
Q ss_pred CCCCCCeEEEeC-CCc-cHHHHHHHH-hCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELG-AGC-GVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelG-cG~-G~~~l~~a~-~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...+|.+||=+| +|. |+.++.+|+ .|++|++++.++-.+.+++ .+. + .+ .+..+...
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~----lGa------------~--~~--i~~~~~~~ 208 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKA----LGA------------E--QC--INYHEEDF 208 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH----HTC------------S--EE--EETTTSCH
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHH----cCC------------C--EE--EeCCCcch
Confidence 455788999997 776 888888875 5999988875443444432 332 1 11 22222210
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.......+|+|+-+ . .-+.+ ....++++++|+++..
T Consensus 209 ~~~~~~g~D~v~d~--~----g~~~~-~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 209 LLAISTPVDAVIDL--V----GGDVG-IQSIDCLKETGCIVSV 244 (321)
T ss_dssp HHHCCSCEEEEEES--S----CHHHH-HHHGGGEEEEEEEEEC
T ss_pred hhhhccCCCEEEEC--C----CcHHH-HHHHHhccCCCEEEEe
Confidence 11112578988853 1 12333 6677889999997764
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.35 Score=39.75 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=68.6
Q ss_pred CeEEEeCCCccHHHHHHHH-hCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-----
Q 027594 66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK----- 139 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~-~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~----- 139 (221)
..|++||||.=.-+..+.. .+.+|+=+|.|+++..-++-+...+. ...++..++..|..+ .-..
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~---------~~~~~~~~v~~Dl~d-~~~~~l~~~ 173 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGV---------TPTADRREVPIDLRQ-DWPPALRSA 173 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTC---------CCSSEEEEEECCTTS-CHHHHHHHT
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCC---------CCCCCeEEEecchHh-hHHHHHHhc
Confidence 4799999996544444332 24578889999888888877765432 113456677766654 2110
Q ss_pred -ccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 140 -AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 140 -~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
......-++++-.++++ .+....+++.+...+.||+.+++.+..
T Consensus 174 g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 174 GFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp TCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred cCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 01123345566566554 456778999998888899988776544
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=93.61 E-value=0.28 Score=38.99 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=52.1
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 134 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~ 134 (221)
+..++++++|=-|++.|+ ++..+++.|++|++++. .+..+.+...+...+ .++.+...|..+
T Consensus 13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~ 79 (270)
T 3is3_A 13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG-------------SDAIAIKADIRQ 79 (270)
T ss_dssp TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTS
T ss_pred CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCC
Confidence 456789999999988764 34455677999988774 334555544444432 456777776665
Q ss_pred CCCcc-------ccCCCccEEEEccccc
Q 027594 135 EDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 135 ~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
..... ....+.|+++.+--+.
T Consensus 80 ~~~v~~~~~~~~~~~g~id~lvnnAg~~ 107 (270)
T 3is3_A 80 VPEIVKLFDQAVAHFGHLDIAVSNSGVV 107 (270)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEECCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 43321 1124689998775543
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.076 Score=44.09 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=55.5
Q ss_pred CCCeEEEe-CCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC--C
Q 027594 64 KGKRVIEL-GAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--H 137 (221)
Q Consensus 64 ~~~~vLel-GcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~--~ 137 (221)
+|.+||=. |+|. |+.++.+|+ .|++|+++|. ++-++.+++ .+. +.+ .+..+.. .
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~~v----i~~~~~~~~~ 209 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK----MGA------------DIV----LNHKESLLNQ 209 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH----HTC------------SEE----ECTTSCHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCC------------cEE----EECCccHHHH
Confidence 68899999 5665 877777775 5999999997 555665554 221 111 1111100 0
Q ss_pred c-cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 138 I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 138 ~-~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
. ......+|+|+-+ ......+....++++++|+++.
T Consensus 210 ~~~~~~~g~Dvv~d~------~g~~~~~~~~~~~l~~~G~iv~ 246 (346)
T 3fbg_A 210 FKTQGIELVDYVFCT------FNTDMYYDDMIQLVKPRGHIAT 246 (346)
T ss_dssp HHHHTCCCEEEEEES------SCHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHhCCCCccEEEEC------CCchHHHHHHHHHhccCCEEEE
Confidence 0 1123579998854 2234566777888999999854
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.14 Score=43.00 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=57.9
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC-C
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-E 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~-~ 135 (221)
...+|.+||=+|+|. |+.++.+|+ +|+ +|+++|. ++-++.+++ .+. + .+ .+..+ .
T Consensus 190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa------------~--~v--i~~~~~~ 249 (378)
T 3uko_A 190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGV------------N--EF--VNPKDHD 249 (378)
T ss_dssp CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTC------------C--EE--ECGGGCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCC------------c--EE--EccccCc
Confidence 345788999999986 888887775 588 7999996 555665542 221 1 11 12221 1
Q ss_pred CCc-----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCC-eEEEEE
Q 027594 136 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG 180 (221)
Q Consensus 136 ~~~-----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~-g~~~i~ 180 (221)
... ......+|+|+-+ . .....+....++++++ |++++.
T Consensus 250 ~~~~~~i~~~~~gg~D~vid~--~----g~~~~~~~~~~~l~~g~G~iv~~ 294 (378)
T 3uko_A 250 KPIQEVIVDLTDGGVDYSFEC--I----GNVSVMRAALECCHKGWGTSVIV 294 (378)
T ss_dssp SCHHHHHHHHTTSCBSEEEEC--S----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred hhHHHHHHHhcCCCCCEEEEC--C----CCHHHHHHHHHHhhccCCEEEEE
Confidence 111 1112379999854 1 2345677778899996 887764
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.055 Score=45.20 Aligned_cols=39 Identities=26% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027594 64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~ 102 (221)
+|.+||=+|+|. |+.++.+|+ +|++|+++|. ++-++.++
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~ 221 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEAL 221 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHH
Confidence 788999999886 777777765 5999999996 44444443
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.1 Score=43.72 Aligned_cols=39 Identities=21% Similarity=0.199 Sum_probs=28.8
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027594 64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~ 102 (221)
+|.+||=+|+|. |...+.+|+ +|++|+++|. ++-++.++
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~ 228 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEAL 228 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 788999999875 777776664 5899999986 44444443
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=1.2 Score=36.59 Aligned_cols=60 Identities=18% Similarity=0.093 Sum_probs=36.5
Q ss_pred CCccEEEEccc--ccCCcCH-HHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEecC
Q 027594 143 PPFDYIIGTDV--VYAEHLL-EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK 207 (221)
Q Consensus 143 ~~fD~Vi~~d~--~y~~~~~-~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~~ 207 (221)
.+||+|+...- --+++.+ +.+++.+.++++|||++.- +.. ...+.+ .+...||+|+.++-
T Consensus 185 ~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT-Yta-ag~VRR---~L~~aGF~V~k~~G 247 (308)
T 3vyw_A 185 FKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS-YSS-SLSVRK---SLLTLGFKVGSSRE 247 (308)
T ss_dssp CCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE-SCC-CHHHHH---HHHHTTCEEEEEEC
T ss_pred cceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE-EeC-cHHHHH---HHHHCCCEEEecCC
Confidence 47999987431 1122222 5699999999999998642 322 122222 22246999988764
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.74 Score=36.52 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=53.8
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+.+++||++|==|++.|+ ++..+++.|++|+++|.... +.+.+.++..+ .++.....|..+..
T Consensus 4 ~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~-~~~~~~~~~~g-------------~~~~~~~~Dv~d~~ 69 (247)
T 4hp8_A 4 PFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP-DETLDIIAKDG-------------GNASALLIDFADPL 69 (247)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC-HHHHHHHHHTT-------------CCEEEEECCTTSTT
T ss_pred CcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH-HHHHHHHHHhC-------------CcEEEEEccCCCHH
Confidence 457899999999999874 56667788999999986321 12222233332 35677777776654
Q ss_pred Ccc--ccCCCccEEEEccccc
Q 027594 137 HIK--AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~--~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.|--+.
T Consensus 70 ~v~~~~~~g~iDiLVNNAGi~ 90 (247)
T 4hp8_A 70 AAKDSFTDAGFDILVNNAGII 90 (247)
T ss_dssp TTTTSSTTTCCCEEEECCCCC
T ss_pred HHHHHHHhCCCCEEEECCCCC
Confidence 432 1235789999876544
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=92.87 E-value=0.076 Score=40.19 Aligned_cols=92 Identities=20% Similarity=0.186 Sum_probs=53.3
Q ss_pred CCCCCeEEEeCC--CccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGA--GCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGc--G~G~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+|++||..|+ |.|.....++ ..|++|+++|. ++.++.+++ .+. . . ..|..+...
T Consensus 36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~-------------~-~--~~d~~~~~~ 95 (198)
T 1pqw_A 36 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV-------------E-Y--VGDSRSVDF 95 (198)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC-------------S-E--EEETTCSTH
T ss_pred CCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC-------------C-E--EeeCCcHHH
Confidence 457889999995 3365555444 46999999996 444444332 121 1 1 123322211
Q ss_pred cc-----ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 IK-----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 ~~-----~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.. .....+|+|+.+-- ...+....++++++|++++.
T Consensus 96 ~~~~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~ 136 (198)
T 1pqw_A 96 ADEILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 136 (198)
T ss_dssp HHHHHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEE
Confidence 10 11246999986521 24567777889999987764
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.081 Score=43.85 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=57.4
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-h-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC-
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-L-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED- 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~- 136 (221)
..+|.+||=+|+|. |..++.+|+ + +++|+++|. ++-++.+++ .+. + .+. +.....
T Consensus 169 ~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa------------~--~~i--~~~~~~~ 228 (345)
T 3jv7_A 169 LGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGA------------D--AAV--KSGAGAA 228 (345)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTC------------S--EEE--ECSTTHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC------------C--EEE--cCCCcHH
Confidence 45788999999986 888888876 4 678999996 445555543 221 1 111 111100
Q ss_pred -Ccc--ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 -HIK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 -~~~--~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
... .....+|+|+-+ . .....+....++++++|++++.
T Consensus 229 ~~v~~~t~g~g~d~v~d~--~----G~~~~~~~~~~~l~~~G~iv~~ 269 (345)
T 3jv7_A 229 DAIRELTGGQGATAVFDF--V----GAQSTIDTAQQVVAVDGHISVV 269 (345)
T ss_dssp HHHHHHHGGGCEEEEEES--S----CCHHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHhCCCCCeEEEEC--C----CCHHHHHHHHHHHhcCCEEEEE
Confidence 000 112378998853 2 2234677788889999998764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.58 E-value=0.59 Score=37.21 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=50.6
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|. .+..+.+...++..+ .++.+...|..+.
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~ 93 (271)
T 3v2g_A 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG-------------GRAVAIRADNRDA 93 (271)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-------------CcEEEEECCCCCH
Confidence 35688999999988764 34455677999988864 234444444444322 3566777666554
Q ss_pred CCcc-------ccCCCccEEEEccccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
+... ....+.|+++.+--+.
T Consensus 94 ~~v~~~~~~~~~~~g~iD~lvnnAg~~ 120 (271)
T 3v2g_A 94 EAIEQAIRETVEALGGLDILVNSAGIW 120 (271)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 3221 1123789999875543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.21 Score=39.90 Aligned_cols=80 Identities=20% Similarity=0.254 Sum_probs=55.7
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
+++||.+|==|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+.+.
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g-------------~~~~~~~~Dvt~~~~ 70 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG-------------KEVLGVKADVSKKKD 70 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHH
Confidence 5689999999998875 45566778999999997 556666666665543 456777777666543
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ..-.+.|+++.|--+
T Consensus 71 v~~~~~~~~~~~G~iDiLVNNAGi 94 (254)
T 4fn4_A 71 VEEFVRRTFETYSRIDVLCNNAGI 94 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCcc
Confidence 21 112578999987543
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=92.34 E-value=0.26 Score=39.30 Aligned_cols=83 Identities=23% Similarity=0.238 Sum_probs=55.2
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.+++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.....|..+.+
T Consensus 5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g-------------~~~~~~~~Dv~~~~ 71 (255)
T 4g81_D 5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG-------------YDAHGVAFDVTDEL 71 (255)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------CCEEECCCCTTCHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHH
Confidence 35789999999998874 55667788999999997 455655555555443 35566666655543
Q ss_pred Cc-------cccCCCccEEEEcccccC
Q 027594 137 HI-------KAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 137 ~~-------~~~~~~fD~Vi~~d~~y~ 156 (221)
.. ...-.+.|+++.|--+..
T Consensus 72 ~v~~~~~~~~~~~G~iDiLVNNAG~~~ 98 (255)
T 4g81_D 72 AIEAAFSKLDAEGIHVDILINNAGIQY 98 (255)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHCCCCcEEEECCCCCC
Confidence 22 122357899998765443
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.12 Score=43.01 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=34.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHH
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~ 102 (221)
..+|..++|..||.|--+..++.. + .+|++.|. +++++.++
T Consensus 55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~ 99 (347)
T 3tka_A 55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK 99 (347)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence 346889999999999999988865 4 47999997 66888874
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=91.92 E-value=0.15 Score=41.57 Aligned_cols=58 Identities=9% Similarity=0.045 Sum_probs=38.9
Q ss_pred ceEEEEEEecCCCCccccCCCccEEEEcccccCCcC--------------------HHHHHHHHHHhcCCCeEEEEEEE
Q 027594 124 SIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL--------------------LEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 124 ~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~--------------------~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
++.+.+.|+.+... ....++||+|++++|++.... +..++..+.++|+|+|.+++...
T Consensus 21 ~~~i~~gD~~~~l~-~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 21 VHRLHVGDAREVLA-SFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp CEEEEESCHHHHHT-TSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CCEEEECcHHHHHh-hCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 45677766544211 123578999999999763211 24567788899999999988654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.58 E-value=0.8 Score=36.40 Aligned_cols=82 Identities=18% Similarity=0.183 Sum_probs=50.1
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-------------hhHHHHHHHHHHhhhccccCCCCCCCCCc
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS 124 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (221)
..+++++||=-|++.|+ ++..+++.|++|+++|.. +.++.+...+... ..+
T Consensus 6 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 72 (287)
T 3pxx_A 6 GRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-------------GRK 72 (287)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-------------TSC
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc-------------CCc
Confidence 35688999999988764 344556779999998853 2333333333322 246
Q ss_pred eEEEEEEecCCCCcc-------ccCCCccEEEEccccc
Q 027594 125 IQAVELDWGNEDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 125 v~~~~~dw~~~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
+.+...|..+..... ....+.|+++.+--+.
T Consensus 73 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 110 (287)
T 3pxx_A 73 AYTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGIC 110 (287)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred eEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 777777766543321 1124789999875543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=1 Score=36.12 Aligned_cols=80 Identities=24% Similarity=0.253 Sum_probs=49.1
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|. ++ ..+.+.+-++..+ .++.+...|..+.
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~ 109 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG-------------VKCVLLPGDLSDE 109 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT-------------CCEEEEESCTTSH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC-------------CcEEEEECCCCCH
Confidence 35688999999988764 34445667999999885 32 3444433333322 4577777666554
Q ss_pred CCcc-------ccCCCccEEEEccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~ 153 (221)
.... ....+.|+++.+--
T Consensus 110 ~~v~~~~~~~~~~~g~iD~lvnnAg 134 (291)
T 3ijr_A 110 QHCKDIVQETVRQLGSLNILVNNVA 134 (291)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 3221 11247899998743
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=0.85 Score=37.11 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=53.7
Q ss_pred eEEEeCC-Cc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-ccc
Q 027594 67 RVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAV 141 (221)
Q Consensus 67 ~vLelGc-G~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~-~~~ 141 (221)
+||=.|+ |. |..++.+|+ +|++|+++|. ++-++.+++ .+. +.+ .+..+.... ...
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~~v----i~~~~~~~~~~~~ 208 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS----LGA------------NRI----LSRDEFAESRPLE 208 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH----HTC------------SEE----EEGGGSSCCCSSC
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCC------------CEE----EecCCHHHHHhhc
Confidence 4999998 54 888888875 5899999996 556666653 221 111 111111111 112
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
...+|+|+-+ .- .+.+....++++++|++++.
T Consensus 209 ~~~~d~v~d~--~g-----~~~~~~~~~~l~~~G~iv~~ 240 (324)
T 3nx4_A 209 KQLWAGAIDT--VG-----DKVLAKVLAQMNYGGCVAAC 240 (324)
T ss_dssp CCCEEEEEES--SC-----HHHHHHHHHTEEEEEEEEEC
T ss_pred CCCccEEEEC--CC-----cHHHHHHHHHHhcCCEEEEE
Confidence 3578988743 21 23677788899999998764
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.027 Score=46.74 Aligned_cols=90 Identities=16% Similarity=0.142 Sum_probs=53.6
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC--
Q 027594 64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-- 137 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-- 137 (221)
+|.+||-+|+|. |...+.+|+ +|+ +|+++|. ++-++.+++- . + . ..+..+...
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l--a---------------~--~--v~~~~~~~~~~ 222 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY--A---------------D--R--LVNPLEEDLLE 222 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT--C---------------S--E--EECTTTSCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh--H---------------H--h--ccCcCccCHHH
Confidence 889999999975 777777775 588 8999996 3344433321 0 0 0 111111110
Q ss_pred -cc-ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 -IK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 -~~-~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.. .....+|+|+-+-. ....+....++++++|++++.
T Consensus 223 ~~~~~~~~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 261 (343)
T 2dq4_A 223 VVRRVTGSGVEVLLEFSG------NEAAIHQGLMALIPGGEARIL 261 (343)
T ss_dssp HHHHHHSSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHhcCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 00 01346999985421 234567777888999987654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=91.07 E-value=1.5 Score=34.34 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=50.0
Q ss_pred CCCCCeEEEeCCC--ccH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 62 KLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 62 ~~~~~~vLelGcG--~G~---~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
.++++++|=.|++ .|+ ++..+++.|++|++++.. ...+.+.+-.+..+ ..++.+..+|..+.
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~ 71 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD------------RNDSIILPCDVTND 71 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS------------SCCCEEEECCCSSS
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC------------CCCceEEeCCCCCH
Confidence 4578999999976 444 455566789999999863 34444443333221 23577888777665
Q ss_pred CCcc-------ccCCCccEEEEcccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~~ 154 (221)
.... ....+.|+++.+--+
T Consensus 72 ~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (266)
T 3oig_A 72 AEIETCFASIKEQVGVIHGIAHCIAF 97 (266)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCeeEEEEcccc
Confidence 4321 112478999887544
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=0.81 Score=37.60 Aligned_cols=94 Identities=19% Similarity=0.165 Sum_probs=58.6
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...+|.+||-.|||. |..++.+|+ +|++|+++|. ++-++.+++ .+. + .+ .+..+.+.
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~--~~--i~~~~~~~ 222 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGA------------E--VA--VNARDTDP 222 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC------------S--EE--EETTTSCH
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCC------------C--EE--EeCCCcCH
Confidence 445788999999986 888888875 5999999996 445555543 221 1 11 12222111
Q ss_pred c---cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 I---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 ~---~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. ......+|+|+-+- .....+....++++++|++++.
T Consensus 223 ~~~~~~~~g~~d~vid~~------g~~~~~~~~~~~l~~~G~iv~~ 262 (340)
T 3s2e_A 223 AAWLQKEIGGAHGVLVTA------VSPKAFSQAIGMVRRGGTIALN 262 (340)
T ss_dssp HHHHHHHHSSEEEEEESS------CCHHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHhCCCCCEEEEeC------CCHHHHHHHHHHhccCCEEEEe
Confidence 0 01123688887541 1345677778889999998764
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.35 Score=39.82 Aligned_cols=95 Identities=23% Similarity=0.260 Sum_probs=56.4
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=.|+|. |..++.+|+ +|++ ++++|. ++-++.+++ .+. -.+ .+..+..
T Consensus 157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa--------------~~~--i~~~~~~ 216 (346)
T 4a2c_A 157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGA--------------MQT--FNSSEMS 216 (346)
T ss_dssp TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC--------------SEE--EETTTSC
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCC--------------eEE--EeCCCCC
Confidence 445788999999986 777777665 5775 678886 445555543 231 111 1112111
Q ss_pred Cc-----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~-----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.. ......+|+|+-+ .-....+....++++++|.+.+..
T Consensus 217 ~~~~~~~~~~~~g~d~v~d~------~G~~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 217 APQMQSVLRELRFNQLILET------AGVPQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp HHHHHHHHGGGCSSEEEEEC------SCSHHHHHHHHHHCCTTCEEEECC
T ss_pred HHHHHHhhcccCCccccccc------ccccchhhhhhheecCCeEEEEEe
Confidence 10 0123467887743 223456677778899999987654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=0.97 Score=38.15 Aligned_cols=106 Identities=13% Similarity=0.150 Sum_probs=63.4
Q ss_pred CCeEEEeCCCccHHHHHHHHhCCEEEEe-cchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 65 GKRVIELGAGCGVAGFGMALLGCNVITT-DQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~ga~v~~~-D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
+.+||.++-+-|.+++.++. +++++.+ |.--.... ++.|++. +.. ...| .....
T Consensus 46 ~~~~l~~n~~~g~~~~~~~~-~~~~~~~~~~~~~~~~----l~~~~~~-------------~~~-~~~~------~~~~~ 100 (381)
T 3dmg_A 46 GERALDLNPGVGWGSLPLEG-RMAVERLETSRAAFRC----LTASGLQ-------------ARL-ALPW------EAAAG 100 (381)
T ss_dssp SSEEEESSCTTSTTTGGGBT-TBEEEEEECBHHHHHH----HHHTTCC-------------CEE-CCGG------GSCTT
T ss_pred CCcEEEecCCCCccccccCC-CCceEEEeCcHHHHHH----HHHcCCC-------------ccc-cCCc------cCCcC
Confidence 35899999999987766642 3566654 53112222 5667751 111 1112 12356
Q ss_pred CccEEEEccccc-CCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh
Q 027594 144 PFDYIIGTDVVY-AEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK 197 (221)
Q Consensus 144 ~fD~Vi~~d~~y-~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~ 197 (221)
.||+|+.--+=. .....+..+..+.+.|+|||.++++..++. ..+.+.+.++
T Consensus 101 ~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~--g~~~~~~~~~ 153 (381)
T 3dmg_A 101 AYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNK--GFERYFKEAR 153 (381)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGG--THHHHHHHHH
T ss_pred CCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHH--HHHHHHHHHH
Confidence 899998642211 112456778888888999999999887654 2455555443
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=90.68 E-value=0.39 Score=37.99 Aligned_cols=80 Identities=13% Similarity=0.116 Sum_probs=52.1
Q ss_pred CCCCCeEEEeCCC----ccH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 62 KLKGKRVIELGAG----CGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 62 ~~~~~~vLelGcG----~G~-~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
.++||++|=-|++ .|. ++..+++.|++|+++|. ++.++.+.+-++..+ ..++.+...|..+.
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~ 70 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN------------QPEAHLYQIDVQSD 70 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT------------CSSCEEEECCTTCH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------------CCcEEEEEccCCCH
Confidence 4689999999953 342 56667788999999997 446666665554432 23567777776654
Q ss_pred CCcc-------ccCCCccEEEEccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~ 153 (221)
+... ..-.+.|+++.|--
T Consensus 71 ~~v~~~~~~~~~~~G~iD~lvnnAg 95 (256)
T 4fs3_A 71 EEVINGFEQIGKDVGNIDGVYHSIA 95 (256)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEeccc
Confidence 3321 11257899887643
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=90.62 E-value=0.26 Score=40.67 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=52.8
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-h-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-L-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=+|+|. |..++.+++ . |++|+++|. ++-++.+++ .+. . .+ .+..+.+
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga-------------~-~~--i~~~~~~ 219 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGA-------------D-VT--INSGDVN 219 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTC-------------S-EE--EEC-CCC
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCC-------------e-EE--EeCCCCC
Confidence 345788999999997 555555554 4 678999996 444444432 221 1 11 1222221
Q ss_pred Cc---c--ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 HI---K--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~~---~--~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.. . .....+|.++-+ ..-...+....++++++|++++.
T Consensus 220 ~~~~v~~~t~g~g~d~~~~~------~~~~~~~~~~~~~l~~~G~~v~~ 262 (348)
T 4eez_A 220 PVDEIKKITGGLGVQSAIVC------AVARIAFEQAVASLKPMGKMVAV 262 (348)
T ss_dssp HHHHHHHHTTSSCEEEEEEC------CSCHHHHHHHHHTEEEEEEEEEC
T ss_pred HHHHhhhhcCCCCceEEEEe------ccCcchhheeheeecCCceEEEE
Confidence 11 1 113356666643 12345567777889999987764
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.51 E-value=1.5 Score=34.77 Aligned_cols=82 Identities=16% Similarity=0.226 Sum_probs=47.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+...+. ..++.+...|..+...
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~ 97 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-----------PGTLIPYRCDLSNEED 97 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------SSEEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCC-----------CceEEEEEecCCCHHH
Confidence 3578899999976553 23334556999999986 4444444444443321 2346666666655432
Q ss_pred ccc-------cCCCccEEEEcccc
Q 027594 138 IKA-------VAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~~-------~~~~fD~Vi~~d~~ 154 (221)
... ...++|+||.+--+
T Consensus 98 v~~~~~~~~~~~g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 98 ILSMFSAIRSQHSGVDICINNAGL 121 (279)
T ss_dssp HHHHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCC
Confidence 210 11368999887544
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.48 Score=37.83 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=51.1
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
+..++++++|=-|++.|+ ++..+++.|++|+++|. .+.++.+...+.... ..++.+...|..+.
T Consensus 22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~ 89 (277)
T 4fc7_A 22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT------------GRRCLPLSMDVRAP 89 (277)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCH
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCcEEEEEcCCCCH
Confidence 456789999999988764 34445567999999986 344443333333221 24577777776654
Q ss_pred CCcc-------ccCCCccEEEEcccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~~ 154 (221)
.... ....+.|+++.+--+
T Consensus 90 ~~v~~~~~~~~~~~g~id~lv~nAg~ 115 (277)
T 4fc7_A 90 PAVMAAVDQALKEFGRIDILINCAAG 115 (277)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 3321 112478999987543
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=90.21 E-value=0.42 Score=37.65 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=52.6
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|. .+.++.+...+...+ .++.+...|..+..
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~~ 74 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG-------------GKAIGLECNVTDEQ 74 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEECCCCCHH
Confidence 45688999999988764 34455677999999996 445555555444432 45677776665543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.+--+.
T Consensus 75 ~v~~~~~~~~~~~g~id~lv~nAg~~ 100 (256)
T 3gaf_A 75 HREAVIKAALDQFGKITVLVNNAGGG 100 (256)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 221 1124789998875543
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=89.91 E-value=0.39 Score=38.12 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=51.8
Q ss_pred cceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhh
Q 027594 35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNT 109 (221)
Q Consensus 35 g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~-~~l~~~~~n~~~n~ 109 (221)
.++.|-+...-.-|+..+ .-.+++++||=.|++.|+ ++..+++.|++|++++. + +..+.+...++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~-------~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~ 78 (271)
T 4iin_A 6 HHSSGVDLGTENLYFQSN-------AMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKG 78 (271)
T ss_dssp -------------------------CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT
T ss_pred ccccccccCcceehhhhh-------hcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC
Confidence 344555444444444443 345688999999988764 34445667999998885 3 35555554444432
Q ss_pred hccccCCCCCCCCCceEEEEEEecCCCCcc-------ccCCCccEEEEccccc
Q 027594 110 SRISQMNPGSDLLGSIQAVELDWGNEDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 110 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
.++.+...|..+..... ....+.|++|.+--+.
T Consensus 79 -------------~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~li~nAg~~ 118 (271)
T 4iin_A 79 -------------YKAAVIKFDAASESDFIEAIQTIVQSDGGLSYLVNNAGVV 118 (271)
T ss_dssp -------------CCEEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred -------------CceEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 35677776665543221 1124789999876544
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=89.89 E-value=0.42 Score=41.76 Aligned_cols=42 Identities=29% Similarity=0.292 Sum_probs=34.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHH
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~ 105 (221)
...+++||.||.|-+++.+.+.|.+ |.++|. +.+.+..+.|.
T Consensus 87 ~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~ 130 (482)
T 3me5_A 87 YAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH 130 (482)
T ss_dssp CSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred ccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence 3468999999999999999999988 677898 45777777664
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=89.84 E-value=2.7 Score=33.70 Aligned_cols=80 Identities=19% Similarity=0.138 Sum_probs=48.4
Q ss_pred CCCCCeEEEeCCC--ccH---HHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 62 KLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 62 ~~~~~~vLelGcG--~G~---~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
.++++++|=.|++ .|+ ++..+++.|++|++++..+ ..+.+++-.+.. .++.+..+|..+.
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~d~ 93 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL--------------GAFVAGHCDVADA 93 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH--------------TCEEEEECCTTCH
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--------------CCceEEECCCCCH
Confidence 4678999999976 333 4556677899999998643 333333322222 2456667666554
Q ss_pred CCcc-------ccCCCccEEEEccccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
.... ....+.|++|.+--+.
T Consensus 94 ~~v~~~~~~~~~~~g~iD~lVnnAG~~ 120 (293)
T 3grk_A 94 ASIDAVFETLEKKWGKLDFLVHAIGFS 120 (293)
T ss_dssp HHHHHHHHHHHHHTSCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCccC
Confidence 3321 1124789999875543
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=89.65 E-value=0.82 Score=37.89 Aligned_cols=89 Identities=13% Similarity=0.098 Sum_probs=54.0
Q ss_pred CeEEEeCCCc-cHHH-HHHH-H-hCCE-EEEecc-hh---hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 66 KRVIELGAGC-GVAG-FGMA-L-LGCN-VITTDQ-IE---VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 66 ~~vLelGcG~-G~~~-l~~a-~-~ga~-v~~~D~-~~---~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.+||=+|+|. |+.+ +.+| + +|++ |+++|. ++ -++.+++ .+. ... +..+.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lGa---------------~~v--~~~~~~ 232 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LDA---------------TYV--DSRQTP 232 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TTC---------------EEE--ETTTSC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cCC---------------ccc--CCCccC
Confidence 8999999976 8887 7777 5 5887 999996 44 4555542 231 111 222111
Q ss_pred C--ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 H--IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~--~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. .......+|+|+-+ .- ....+....++++++|++++..
T Consensus 233 ~~~i~~~~gg~Dvvid~--~g----~~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 233 VEDVPDVYEQMDFIYEA--TG----FPKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp GGGHHHHSCCEEEEEEC--SC----CHHHHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHhCCCCCEEEEC--CC----ChHHHHHHHHHHhcCCEEEEEe
Confidence 0 10002378998843 21 2345677778899999877643
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=89.64 E-value=0.83 Score=38.50 Aligned_cols=97 Identities=27% Similarity=0.236 Sum_probs=58.8
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||-+|||. |+.++.+|+ +|+ +|+++|. ++-++.+++ .+. .+ .+..+.+
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa---------------~~--i~~~~~~ 240 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF---------------ET--IDLRNSA 240 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC---------------EE--EETTSSS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---------------cE--EcCCCcc
Confidence 345788999999987 888888876 688 8999996 445555442 221 21 2332221
Q ss_pred C-c---c--ccCCCccEEEEcccccCCc----------CHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 H-I---K--AVAPPFDYIIGTDVVYAEH----------LLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~-~---~--~~~~~fD~Vi~~d~~y~~~----------~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. . . .....+|+|+-+ .-... .....+....++++++|++++.
T Consensus 241 ~~~~~~~~~~~g~g~Dvvid~--~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~ 298 (398)
T 2dph_A 241 PLRDQIDQILGKPEVDCGVDA--VGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP 298 (398)
T ss_dssp CHHHHHHHHHSSSCEEEEEEC--SCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred hHHHHHHHHhCCCCCCEEEEC--CCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence 1 0 0 112369999854 22211 1223567778889999987653
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.63 E-value=0.51 Score=37.23 Aligned_cols=83 Identities=24% Similarity=0.284 Sum_probs=53.2
Q ss_pred CCCCCCeEEEeCC-CccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 61 SKLKGKRVIELGA-GCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 61 ~~~~~~~vLelGc-G~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..++++++|=.|+ |.|+ ++..+++.|++|+++|. .+.++.+...+.... ..++.+...|..+.
T Consensus 18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~ 85 (266)
T 3o38_A 18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG------------LGRVEAVVCDVTST 85 (266)
T ss_dssp STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC------------SSCEEEEECCTTCH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC------------CCceEEEEeCCCCH
Confidence 3467899999998 6664 44556678999999996 445555544443322 24678888777654
Q ss_pred CCcc-------ccCCCccEEEEccccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
.... ....+.|++|.+--+.
T Consensus 86 ~~v~~~~~~~~~~~g~id~li~~Ag~~ 112 (266)
T 3o38_A 86 EAVDALITQTVEKAGRLDVLVNNAGLG 112 (266)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCCcC
Confidence 3321 1124789999876543
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=89.56 E-value=0.75 Score=36.40 Aligned_cols=82 Identities=18% Similarity=0.283 Sum_probs=53.0
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=-|++.|+ ++..+++.|++|+++|. .+.++.+.+.+.... ..++.+...|..+.+.
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~~~ 84 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF------------GTDVHTVAIDLAEPDA 84 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTSTTH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCcEEEEEecCCCHHH
Confidence 4578999999988764 34455667999999996 445555544444322 2467788877776654
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--+.
T Consensus 85 v~~~~~~~~~~~g~id~lv~nAg~~ 109 (266)
T 4egf_A 85 PAELARRAAEAFGGLDVLVNNAGIS 109 (266)
T ss_dssp HHHHHHHHHHHHTSCSEEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcC
Confidence 31 1124789998875544
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.53 E-value=0.27 Score=40.56 Aligned_cols=44 Identities=2% Similarity=0.078 Sum_probs=34.1
Q ss_pred cCCCccEEEEcccccCCc--------------CHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEH--------------LLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~--------------~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
..++||+|+.++|+.... .+..++..+.++|+|+|.+++....+
T Consensus 30 ~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~ 87 (323)
T 1boo_A 30 PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA 87 (323)
T ss_dssp CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence 356899999988864431 36778888899999999999876543
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=89.50 E-value=0.48 Score=37.01 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=51.0
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+...
T Consensus 6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 72 (253)
T 3qiv_A 6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG-------------GTAISVAVDVSDPES 72 (253)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CEEEEEECCTTSHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHH
Confidence 4578999999987664 34445567999999996 445555555444332 356777766655433
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--+
T Consensus 73 ~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 73 AKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 21 112378999987654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.49 E-value=0.58 Score=36.97 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=52.6
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=-|++.|+ ++..+++.|++|+++|. .+.++.+.+.+...+ .++.+...|..+...
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~ 74 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG-------------RRALSVGTDITDDAQ 74 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHH
Confidence 4678999999998774 44556677999999996 445555555544432 457777777665543
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--.
T Consensus 75 v~~~~~~~~~~~g~id~lv~nAg~ 98 (264)
T 3ucx_A 75 VAHLVDETMKAYGRVDVVINNAFR 98 (264)
T ss_dssp HHHHHHHHHHHTSCCSEEEECCCS
T ss_pred HHHHHHHHHHHcCCCcEEEECCCC
Confidence 21 112478999987633
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=89.24 E-value=0.44 Score=38.09 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=52.0
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ .++.+...|..+...
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~d~~~ 95 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG-------------GKALPIRCDVTQPDQ 95 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT-------------CCCEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCHHH
Confidence 5678999999988764 34455667999999986 445555555444432 356777766655433
Q ss_pred ccc-------cCCCccEEEEccccc
Q 027594 138 IKA-------VAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~~-------~~~~fD~Vi~~d~~y 155 (221)
... ...+.|+++.+--+.
T Consensus 96 v~~~~~~~~~~~g~iD~lvnnAg~~ 120 (276)
T 3r1i_A 96 VRGMLDQMTGELGGIDIAVCNAGIV 120 (276)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 211 123789999876544
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.22 E-value=0.92 Score=35.98 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=48.8
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+++++|=-|++.|+ ++..+++.|++|++++. .+..+.+...+...+ .++.+...|..+...
T Consensus 25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~~~ 91 (267)
T 3u5t_A 25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG-------------GKALTAQADVSDPAA 91 (267)
T ss_dssp --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-------------CeEEEEEcCCCCHHH
Confidence 467899999988764 44456677999888753 335555544444332 356777766665433
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--+.
T Consensus 92 v~~~~~~~~~~~g~iD~lvnnAG~~ 116 (267)
T 3u5t_A 92 VRRLFATAEEAFGGVDVLVNNAGIM 116 (267)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 21 1124789999876544
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=89.20 E-value=1.6 Score=34.77 Aligned_cols=81 Identities=21% Similarity=0.300 Sum_probs=47.4
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++++++|=.|++.|+ ++..+++.|++|++++. ++ ..+.+.+.+...+ .++.+...|..+..
T Consensus 26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~ 92 (283)
T 1g0o_A 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG-------------SDAACVKANVGVVE 92 (283)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhC-------------CCeEEEEcCCCCHH
Confidence 3578899999987664 33344567999999885 32 3444433343322 35666666655433
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.+--+.
T Consensus 93 ~~~~~~~~~~~~~g~iD~lv~~Ag~~ 118 (283)
T 1g0o_A 93 DIVRMFEEAVKIFGKLDIVCSNSGVV 118 (283)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 221 0114689998875543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=89.09 E-value=0.44 Score=37.47 Aligned_cols=79 Identities=28% Similarity=0.246 Sum_probs=52.3
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ .++.+..+|..+....
T Consensus 5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~v 71 (252)
T 3h7a_A 5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG-------------GRIVARSLDARNEDEV 71 (252)
T ss_dssp CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT-------------CEEEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEECcCCCHHHH
Confidence 468899999988774 34455667999999996 455555555555433 3577777776554332
Q ss_pred c-------ccCCCccEEEEccccc
Q 027594 139 K-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~y 155 (221)
. .. .+.|+++.+--+.
T Consensus 72 ~~~~~~~~~~-g~id~lv~nAg~~ 94 (252)
T 3h7a_A 72 TAFLNAADAH-APLEVTIFNVGAN 94 (252)
T ss_dssp HHHHHHHHHH-SCEEEEEECCCCC
T ss_pred HHHHHHHHhh-CCceEEEECCCcC
Confidence 1 12 5789999876554
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.06 E-value=0.3 Score=40.00 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=54.6
Q ss_pred CCCCCCeEEEeCC-C-ccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGA-G-CGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGc-G-~G~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...++++||-.|+ | .|...+.++ ..|++|+++|. ++.++.+++ .+. .. ..+..+..
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~----~g~-------------~~---~~~~~~~~ 196 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGA-------------WQ---VINYREED 196 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTC-------------SE---EEETTTSC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC-------------CE---EEECCCcc
Confidence 3457889999994 3 366666555 46999999996 445555543 221 11 12322221
Q ss_pred Ccc-----ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 HIK-----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~~~-----~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
... .....+|+|+.+-- ...+....++++++|++++.
T Consensus 197 ~~~~~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~ 238 (327)
T 1qor_A 197 LVERLKEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSF 238 (327)
T ss_dssp HHHHHHHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEE
Confidence 100 11246999986532 24456677888999987664
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=88.87 E-value=0.32 Score=38.34 Aligned_cols=80 Identities=29% Similarity=0.309 Sum_probs=50.1
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+... ..++.+...|..+...
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~ 69 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF-------------PGQILTVQMDVRNTDD 69 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS-------------TTCEEEEECCTTCHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence 4578999999987764 34445667999999996 44555444433322 2457777777665433
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--+
T Consensus 70 v~~~~~~~~~~~g~id~lv~nAg~ 93 (257)
T 3imf_A 70 IQKMIEQIDEKFGRIDILINNAAG 93 (257)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 112478999887543
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=88.85 E-value=0.65 Score=37.08 Aligned_cols=81 Identities=17% Similarity=0.238 Sum_probs=51.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ .++.+...|..+...
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~ 96 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG-------------GTAQELAGDLSEAGA 96 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT-------------CCEEEEECCTTSTTH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CeEEEEEecCCCHHH
Confidence 4578999999987764 34455667999999986 444444444444332 457777777766543
Q ss_pred ccc------cCCCccEEEEccccc
Q 027594 138 IKA------VAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~~------~~~~fD~Vi~~d~~y 155 (221)
... ...+.|+++.+--+.
T Consensus 97 ~~~~~~~~~~~g~iD~lvnnAg~~ 120 (275)
T 4imr_A 97 GTDLIERAEAIAPVDILVINASAQ 120 (275)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCCC
Confidence 210 014789999876543
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=88.62 E-value=1.4 Score=34.78 Aligned_cols=82 Identities=20% Similarity=0.148 Sum_probs=49.7
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h---hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEec
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I---EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~---~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~ 133 (221)
..++++++|=-|++.|+ ++..+++.|++|++++. . +.++.+...+... ..++.+...|..
T Consensus 7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~ 73 (262)
T 3ksu_A 7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ-------------GAKVALYQSDLS 73 (262)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT-------------TCEEEEEECCCC
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc-------------CCcEEEEECCCC
Confidence 45688999999988774 33444566999988763 2 2344443333332 245777777776
Q ss_pred CCCCcc-------ccCCCccEEEEccccc
Q 027594 134 NEDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 134 ~~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
+.+... ....+.|+++.+--+.
T Consensus 74 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~ 102 (262)
T 3ksu_A 74 NEEEVAKLFDFAEKEFGKVDIAINTVGKV 102 (262)
T ss_dssp SHHHHHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 554321 1124789999876543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=2 Score=34.47 Aligned_cols=81 Identities=12% Similarity=0.110 Sum_probs=49.2
Q ss_pred CCCCCCeEEEeCCCc--cH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC
Q 027594 61 SKLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 134 (221)
Q Consensus 61 ~~~~~~~vLelGcG~--G~---~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~ 134 (221)
..++++++|=.|++. |+ ++..+++.|++|+++|.. +..+.++.-.+..+ .+.+...|..+
T Consensus 26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~Dv~d 91 (296)
T 3k31_A 26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG--------------VKLTVPCDVSD 91 (296)
T ss_dssp CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT--------------CCEEEECCTTC
T ss_pred hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--------------CeEEEEcCCCC
Confidence 346789999999853 43 455667789999999863 34444443333322 34566666655
Q ss_pred CCCcc-------ccCCCccEEEEccccc
Q 027594 135 EDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 135 ~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
.+... ....+.|+++.+--+.
T Consensus 92 ~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 119 (296)
T 3k31_A 92 AESVDNMFKVLAEEWGSLDFVVHAVAFS 119 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 43321 1124789999876543
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.57 E-value=0.58 Score=36.97 Aligned_cols=83 Identities=17% Similarity=0.215 Sum_probs=52.1
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ ..++.+...|..+..
T Consensus 6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~~ 73 (262)
T 3pk0_A 6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG------------SGKVIGVQTDVSDRA 73 (262)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS------------SSCEEEEECCTTSHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC------------CCcEEEEEcCCCCHH
Confidence 34678999999987764 34445667999999996 445555444444322 246777777766543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.+--+.
T Consensus 74 ~v~~~~~~~~~~~g~id~lvnnAg~~ 99 (262)
T 3pk0_A 74 QCDALAGRAVEEFGGIDVVCANAGVF 99 (262)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 321 1123789999875544
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.56 E-value=0.61 Score=37.21 Aligned_cols=82 Identities=20% Similarity=0.290 Sum_probs=50.4
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|..+..+.+...+... ..++.+...|..+...
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~~~ 93 (273)
T 3uf0_A 27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADG-------------GGSAEAVVADLADLEG 93 (273)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTT-------------TCEEEEEECCTTCHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHH
Confidence 45688999999988764 4445567799999998544333333333322 2456777766655432
Q ss_pred ccc------cCCCccEEEEccccc
Q 027594 138 IKA------VAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~~------~~~~fD~Vi~~d~~y 155 (221)
... ...+.|+++.+--+.
T Consensus 94 v~~~~~~~~~~g~iD~lv~nAg~~ 117 (273)
T 3uf0_A 94 AANVAEELAATRRVDVLVNNAGII 117 (273)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHhcCCCcEEEECCCCC
Confidence 211 114789999875544
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=88.36 E-value=0.72 Score=36.02 Aligned_cols=80 Identities=20% Similarity=0.331 Sum_probs=48.8
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+...+ .++.+...|..+...
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~~~~~ 70 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG-------------AKVHVLELDVADRQG 70 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEECCCCCHHH
Confidence 4578899999987663 33445567999999986 445554444443322 356667766655432
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--+
T Consensus 71 ~~~~~~~~~~~~g~id~lv~nAg~ 94 (247)
T 2jah_A 71 VDAAVASTVEALGGLDILVNNAGI 94 (247)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 011478999887544
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=88.29 E-value=0.66 Score=37.54 Aligned_cols=81 Identities=14% Similarity=0.173 Sum_probs=51.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+++++||=.|++.|+ ++..+++.|++|+++|. .+.++.+.+.+...+ .++.+...|..+...
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~ 94 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG-------------FDAHGVVCDVRHLDE 94 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEEccCCCHHH
Confidence 4678999999988764 34445667999999996 445555555454432 356777766655433
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|++|.+--+.
T Consensus 95 v~~~~~~~~~~~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 95 MVRLADEAFRLLGGVDVVFSNAGIV 119 (301)
T ss_dssp HHHHHHHHHHHHSSCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcC
Confidence 21 1124789999875543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=88.16 E-value=1 Score=35.38 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=48.1
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+ + .++.+...|..+...
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~~~~ 68 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G-------------PRVHALRSDIADLNE 68 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G-------------GGEEEEECCTTCHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------------CcceEEEccCCCHHH
Confidence 4678999999988764 34455667999999996 44444333322 1 246666766554432
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--+.
T Consensus 69 v~~~~~~~~~~~g~id~lv~nAg~~ 93 (255)
T 4eso_A 69 IAVLGAAAGQTLGAIDLLHINAGVS 93 (255)
T ss_dssp HHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 21 1124789998875443
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=88.01 E-value=0.91 Score=36.30 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=50.1
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC-C
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~-~ 136 (221)
..++++||=-|++.|+ ++..+++.|++|++++. .+..+.+.+.+...+ ..++.+..+|..+. .
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~~~ 76 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN------------HENVVFHQLDVTDPIA 76 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------------CCSEEEEECCTTSCHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------------CCceEEEEccCCCcHH
Confidence 4578899999987664 34445567999999986 444444444443322 24678888877765 3
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|++|.+--+.
T Consensus 77 ~v~~~~~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 77 TMSSLADFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCccc
Confidence 211 1124789999886554
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=88.00 E-value=5.9 Score=32.87 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=52.7
Q ss_pred CCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC--
Q 027594 63 LKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-- 137 (221)
Q Consensus 63 ~~~~~vLelGc-G-~G~~~l~~a~-~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-- 137 (221)
.+|.+||=+|+ | .|..++.+|+ .|++|+++..++-++.+++ .+. + .+ ++..+.+.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~----lGa------------~--~v--i~~~~~~~~~ 222 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKS----RGA------------E--EV--FDYRAPNLAQ 222 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHH----TTC------------S--EE--EETTSTTHHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHH----cCC------------c--EE--EECCCchHHH
Confidence 57889999998 4 4888887775 5899887754444444432 221 1 11 12222111
Q ss_pred -c-cccCCCccEEEEcccccCCcCHHHHHHHHHHhc-CCCeEEEEE
Q 027594 138 -I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALS-GPKTTILLG 180 (221)
Q Consensus 138 -~-~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll-~~~g~~~i~ 180 (221)
. ......+|+|+-+ .- ....+....+++ +++|++++.
T Consensus 223 ~v~~~t~g~~d~v~d~--~g----~~~~~~~~~~~l~~~~G~iv~~ 262 (371)
T 3gqv_A 223 TIRTYTKNNLRYALDC--IT----NVESTTFCFAAIGRAGGHYVSL 262 (371)
T ss_dssp HHHHHTTTCCCEEEES--SC----SHHHHHHHHHHSCTTCEEEEES
T ss_pred HHHHHccCCccEEEEC--CC----chHHHHHHHHHhhcCCCEEEEE
Confidence 0 0113458998843 22 234455666667 689987764
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.99 E-value=2.5 Score=33.94 Aligned_cols=81 Identities=17% Similarity=0.152 Sum_probs=48.9
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-h--hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 134 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~-~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~ 134 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|.. + ..+.+...++..+ .++.+...|..+
T Consensus 45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d 111 (294)
T 3r3s_A 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG-------------RKAVLLPGDLSD 111 (294)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT-------------CCEEECCCCTTS
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC-------------CcEEEEEecCCC
Confidence 35678999999987764 344456679999998863 2 3444444333332 356666666554
Q ss_pred CCCcc-------ccCCCccEEEEcccc
Q 027594 135 EDHIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 135 ~~~~~-------~~~~~fD~Vi~~d~~ 154 (221)
..... ....+.|+++.+--+
T Consensus 112 ~~~v~~~~~~~~~~~g~iD~lv~nAg~ 138 (294)
T 3r3s_A 112 ESFARSLVHKAREALGGLDILALVAGK 138 (294)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 43211 112478999887654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.60 E-value=1.4 Score=35.18 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=51.5
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
....++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ .++.+...|..+.
T Consensus 25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~ 91 (280)
T 4da9_A 25 TQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG-------------ARVIFLRADLADL 91 (280)
T ss_dssp SCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSG
T ss_pred hccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC-------------CcEEEEEecCCCH
Confidence 34578899999988764 44455677999999884 334554444444332 4677778777665
Q ss_pred CCccc-------cCCCccEEEEcccc
Q 027594 136 DHIKA-------VAPPFDYIIGTDVV 154 (221)
Q Consensus 136 ~~~~~-------~~~~fD~Vi~~d~~ 154 (221)
..... ...+.|+++.+--+
T Consensus 92 ~~v~~~~~~~~~~~g~iD~lvnnAg~ 117 (280)
T 4da9_A 92 SSHQATVDAVVAEFGRIDCLVNNAGI 117 (280)
T ss_dssp GGHHHHHHHHHHHHSCCCEEEEECC-
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 44321 12378999887654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.56 E-value=0.67 Score=36.85 Aligned_cols=79 Identities=14% Similarity=0.205 Sum_probs=50.1
Q ss_pred CCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++++|=-|++.|+ ++..+++.|++|+++|. .+.++.+...+...+ .++.+..+|..+.....
T Consensus 3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~v~ 69 (264)
T 3tfo_A 3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG-------------GTALAQVLDVTDRHSVA 69 (264)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHHHHH
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHHHH
Confidence 57899999988764 34455667999999996 445555555444432 35666776665543321
Q ss_pred -------ccCCCccEEEEccccc
Q 027594 140 -------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 140 -------~~~~~fD~Vi~~d~~y 155 (221)
....+.|+++.+--+.
T Consensus 70 ~~~~~~~~~~g~iD~lVnnAG~~ 92 (264)
T 3tfo_A 70 AFAQAAVDTWGRIDVLVNNAGVM 92 (264)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCCC
Confidence 1124789999876544
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.50 E-value=0.42 Score=37.96 Aligned_cols=40 Identities=0% Similarity=-0.066 Sum_probs=30.7
Q ss_pred CCCccEEEEcccccCC-c-------------CHHHHHHHHHHhcCCCeEEEEEE
Q 027594 142 APPFDYIIGTDVVYAE-H-------------LLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~-~-------------~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.++||+|+..+|+... . .+..++..+.++|+|+|.+++..
T Consensus 21 ~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 21 NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4689999998875433 1 35667788889999999998865
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.49 E-value=1.8 Score=36.42 Aligned_cols=99 Identities=21% Similarity=0.177 Sum_probs=59.3
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||-+|||. |+.++.+|+ +|+ +|+++|. ++-++.+++ .+. .+ .+.....
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa---------------~~--i~~~~~~ 240 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF---------------EI--ADLSLDT 240 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---------------EE--EETTSSS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC---------------cE--EccCCcc
Confidence 345788999999987 888888876 588 6999996 445565543 221 11 2222211
Q ss_pred C----cc--ccCCCccEEEEcccc---------cCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 H----IK--AVAPPFDYIIGTDVV---------YAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~----~~--~~~~~fD~Vi~~d~~---------y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. .. .....+|+|+-+-.- ++.......+....++++++|++++.
T Consensus 241 ~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 299 (398)
T 1kol_A 241 PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 299 (398)
T ss_dssp CHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred hHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence 1 00 112479999854221 11112234677778889999998664
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=87.25 E-value=1.7 Score=35.91 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=32.0
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~ 103 (221)
..+|.+||-+|+|. |...+.+|+ +|++|+++|. ++-++.+++
T Consensus 177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~ 221 (360)
T 1piw_A 177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK 221 (360)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 45788999999975 777777775 6999999996 455666553
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=87.24 E-value=1.1 Score=35.24 Aligned_cols=80 Identities=15% Similarity=0.134 Sum_probs=48.3
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ .++.+...|..+.+.
T Consensus 6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 72 (260)
T 2ae2_A 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-------------FKVEASVCDLSSRSE 72 (260)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHH
Confidence 3578899999987654 33345567999999986 444444443333222 356667766655432
Q ss_pred ccc-------cC-CCccEEEEcccc
Q 027594 138 IKA-------VA-PPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~~-------~~-~~fD~Vi~~d~~ 154 (221)
... .. .+.|+++.+--+
T Consensus 73 ~~~~~~~~~~~~~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 73 RQELMNTVANHFHGKLNILVNNAGI 97 (260)
T ss_dssp HHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCCEEEECCCC
Confidence 210 11 578999987554
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=87.18 E-value=1.6 Score=33.46 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=47.7
Q ss_pred CCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 65 ~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++++|=.|++.|+ ++..+++.|++|++++. .+.++.+.+.+.... ..++.+...|..+......
T Consensus 2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~v~~ 69 (235)
T 3l77_A 2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ------------GVEVFYHHLDVSKAESVEE 69 (235)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCeEEEEEeccCCHHHHHH
Confidence 5788989977653 33444567999999986 444554444443221 2457777777665433211
Q ss_pred -------cCCCccEEEEccccc
Q 027594 141 -------VAPPFDYIIGTDVVY 155 (221)
Q Consensus 141 -------~~~~fD~Vi~~d~~y 155 (221)
...+.|+++.+--+.
T Consensus 70 ~~~~~~~~~g~id~li~~Ag~~ 91 (235)
T 3l77_A 70 FSKKVLERFGDVDVVVANAGLG 91 (235)
T ss_dssp HCC-HHHHHSSCSEEEECCCCC
T ss_pred HHHHHHHhcCCCCEEEECCccc
Confidence 113789999876544
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.15 E-value=2.4 Score=34.07 Aligned_cols=82 Identities=22% Similarity=0.183 Sum_probs=48.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+...+. ...++.+...|..+....
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----------~~~~~~~~~~Dv~d~~~v 93 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV----------PAEKINAVVADVTEASGQ 93 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----------CCceEEEEecCCCCHHHH
Confidence 578899999987663 33344567999999986 4444444444433220 011567777776654332
Q ss_pred cc-------cCCCccEEEEcccc
Q 027594 139 KA-------VAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~~-------~~~~fD~Vi~~d~~ 154 (221)
.. ...+.|+++.+--+
T Consensus 94 ~~~~~~~~~~~g~iD~lvnnAG~ 116 (297)
T 1xhl_A 94 DDIINTTLAKFGKIDILVNNAGA 116 (297)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCc
Confidence 10 11378999887544
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.14 E-value=1 Score=35.69 Aligned_cols=82 Identities=18% Similarity=0.232 Sum_probs=49.7
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+++++||=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+.+
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dl~~~~ 93 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG-------------AKVHTFVVDCSNRE 93 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC-------------CeEEEEEeeCCCHH
Confidence 44678999999976553 23334456999999986 444444444443322 35777777665543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....++|+||.+--+.
T Consensus 94 ~v~~~~~~~~~~~g~iD~li~~Ag~~ 119 (272)
T 1yb1_A 94 DIYSSAKKVKAEIGDVSILVNNAGVV 119 (272)
T ss_dssp HHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHCCCCcEEEECCCcC
Confidence 221 1124789999876543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=87.13 E-value=1.6 Score=35.29 Aligned_cols=88 Identities=14% Similarity=0.046 Sum_probs=53.0
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
...+|.+||=+|+|. |..++.+|+ .|++|++++.++-++.+++ .+. -.+. + +..
T Consensus 139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~----lGa--------------~~v~--~--d~~-- 194 (315)
T 3goh_A 139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAK----RGV--------------RHLY--R--EPS-- 194 (315)
T ss_dssp CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH----HTE--------------EEEE--S--SGG--
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEChhhHHHHHH----cCC--------------CEEE--c--CHH--
Confidence 455789999999975 888887775 5999999994345565543 232 1111 1 111
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.....+|+|+- +.-.. . .....++++++|++++.
T Consensus 195 -~v~~g~Dvv~d--~~g~~----~-~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 195 -QVTQKYFAIFD--AVNSQ----N-AAALVPSLKANGHIICI 228 (315)
T ss_dssp -GCCSCEEEEEC--C------------TTGGGEEEEEEEEEE
T ss_pred -HhCCCccEEEE--CCCch----h-HHHHHHHhcCCCEEEEE
Confidence 11568999883 32221 1 13445778899987765
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=87.11 E-value=2.4 Score=33.71 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=47.9
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC-
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN- 134 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~- 134 (221)
..++++++|=.|++.|+ ++..+++.|++|++++. + +.++.+...+.... ..++.+..+|..+
T Consensus 19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~ 86 (288)
T 2x9g_A 19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER------------SNTAVVCQADLTNS 86 (288)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS------------TTCEEEEECCCSCS
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc------------CCceEEEEeecCCc
Confidence 34578899999987764 34445667999999985 4 44444443333111 2356777777766
Q ss_pred ---CCCcc-------ccCCCccEEEEcccc
Q 027594 135 ---EDHIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 135 ---~~~~~-------~~~~~fD~Vi~~d~~ 154 (221)
..... ....+.|++|.+--+
T Consensus 87 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAG~ 116 (288)
T 2x9g_A 87 NVLPASCEEIINSCFRAFGRCDVLVNNASA 116 (288)
T ss_dssp TTHHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 22111 012478999887544
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=87.03 E-value=1 Score=35.23 Aligned_cols=82 Identities=21% Similarity=0.213 Sum_probs=50.4
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEe--cC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW--GN 134 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw--~~ 134 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ ..++.+...|. .+
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~ 75 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET------------GRQPQWFILDLLTCT 75 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SCCCEEEECCTTTCC
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCCceEEEEecccCC
Confidence 45788999999987764 34445667999999996 445555554444433 13456666665 22
Q ss_pred CCCc-------cccCCCccEEEEcccc
Q 027594 135 EDHI-------KAVAPPFDYIIGTDVV 154 (221)
Q Consensus 135 ~~~~-------~~~~~~fD~Vi~~d~~ 154 (221)
.... .....+.|+++.+--+
T Consensus 76 ~~~~~~~~~~~~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 76 SENCQQLAQRIAVNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHHHHHHHHHHHHHCSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 2211 1112478999987654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=86.97 E-value=1.9 Score=35.77 Aligned_cols=93 Identities=20% Similarity=0.153 Sum_probs=56.9
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...+|.+||=+|+|. |+.++.+|+ .|++|+++|. ++-++.+++ .+. + .+ .+ .....
T Consensus 186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~--~v--i~-~~~~~ 244 (363)
T 3uog_A 186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA----LGA------------D--HG--IN-RLEED 244 (363)
T ss_dssp CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HTC------------S--EE--EE-TTTSC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH----cCC------------C--EE--Ec-CCccc
Confidence 445788999999886 877777775 5999999996 445555443 221 1 11 12 12111
Q ss_pred c------cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 I------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~------~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. ......+|+|+-+-. . ..+....++++++|++++..
T Consensus 245 ~~~~v~~~~~g~g~D~vid~~g---~----~~~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 245 WVERVYALTGDRGADHILEIAG---G----AGLGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp HHHHHHHHHTTCCEEEEEEETT---S----SCHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCceEEEECCC---h----HHHHHHHHHhhcCCEEEEEe
Confidence 1 011347999985522 2 23455667889999987653
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=86.96 E-value=0.53 Score=37.52 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=50.8
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+...
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~ 89 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG-------------HDAEAVAFDVTSESE 89 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------CCEEECCCCTTCHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHHH
Confidence 4678999999987764 44455667999999996 445555544444332 356666666554432
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--+.
T Consensus 90 v~~~~~~~~~~~g~iD~lv~nAg~~ 114 (271)
T 4ibo_A 90 IIEAFARLDEQGIDVDILVNNAGIQ 114 (271)
T ss_dssp HHHHHHHHHHHTCCCCEEEECCCCC
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCC
Confidence 21 1124789999876544
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=86.92 E-value=0.82 Score=36.35 Aligned_cols=81 Identities=14% Similarity=0.101 Sum_probs=50.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ .++.+..+|..+...
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~~~ 91 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG-------------LEGRGAVLNVNDATA 91 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT-------------CCCEEEECCTTCHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEEeCCCHHH
Confidence 4578899999987764 34455677999999996 445555555554433 345666666555432
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--+.
T Consensus 92 v~~~~~~~~~~~g~iD~lvnnAg~~ 116 (270)
T 3ftp_A 92 VDALVESTLKEFGALNVLVNNAGIT 116 (270)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 21 1124789999876543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=86.82 E-value=3.6 Score=30.20 Aligned_cols=40 Identities=20% Similarity=0.097 Sum_probs=26.7
Q ss_pred CCCCCeEEEeCCCc-cH-HHHHHHHh-CCEEEEecc-hhhHHHH
Q 027594 62 KLKGKRVIELGAGC-GV-AGFGMALL-GCNVITTDQ-IEVLPLL 101 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~-~~l~~a~~-ga~v~~~D~-~~~l~~~ 101 (221)
...+++|+=+|+|. |. ++..+.+. |.+|+++|. ++.++.+
T Consensus 36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~ 79 (183)
T 3c85_A 36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH 79 (183)
T ss_dssp CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH
Confidence 34577899999875 53 33444567 899999997 4444433
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=86.81 E-value=0.73 Score=36.80 Aligned_cols=79 Identities=22% Similarity=0.265 Sum_probs=47.0
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...++++||=.|++.|+ ++..+++.|++|++++. ++.++.+...+...+ ..++.+...|..+..
T Consensus 24 ~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dl~d~~ 91 (286)
T 1xu9_A 24 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG------------AASAHYIAGTMEDMT 91 (286)
T ss_dssp GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------------CSEEEEEECCTTCHH
T ss_pred hhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC------------CCceEEEeCCCCCHH
Confidence 44678999999986653 23334567999999986 445544444443322 135667776665433
Q ss_pred Ccc-------ccCCCccEEEEc
Q 027594 137 HIK-------AVAPPFDYIIGT 151 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~ 151 (221)
... ....+.|++|.+
T Consensus 92 ~v~~~~~~~~~~~g~iD~li~n 113 (286)
T 1xu9_A 92 FAEQFVAQAGKLMGGLDMLILN 113 (286)
T ss_dssp HHHHHHHHHHHHHTSCSEEEEC
T ss_pred HHHHHHHHHHHHcCCCCEEEEC
Confidence 221 011478999976
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.79 E-value=2.2 Score=33.66 Aligned_cols=82 Identities=23% Similarity=0.239 Sum_probs=50.7
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-------------hhHHHHHHHHHHhhhccccCCCCCCCCCc
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS 124 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|.. +.++.+.+.+...+ .+
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 75 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG-------------SR 75 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT-------------CC
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC-------------Ce
Confidence 45688999999987764 444556779999998842 23333333333322 46
Q ss_pred eEEEEEEecCCCCccc-------cCCCccEEEEccccc
Q 027594 125 IQAVELDWGNEDHIKA-------VAPPFDYIIGTDVVY 155 (221)
Q Consensus 125 v~~~~~dw~~~~~~~~-------~~~~fD~Vi~~d~~y 155 (221)
+.+...|..+...... ...+.|++|.+--+.
T Consensus 76 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 76 IVARQADVRDRESLSAALQAGLDELGRLDIVVANAGIA 113 (278)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 7777777665433211 124789999876544
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.67 E-value=1.3 Score=35.19 Aligned_cols=81 Identities=17% Similarity=0.110 Sum_probs=49.0
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+.+.
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 84 (273)
T 1ae1_A 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG-------------LNVEGSVCDLLSRTE 84 (273)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEECCCCCHHH
Confidence 3578999999987654 33445567999999986 444444433333222 356667766655432
Q ss_pred cc-------ccC-CCccEEEEccccc
Q 027594 138 IK-------AVA-PPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~-~~fD~Vi~~d~~y 155 (221)
.. ... .+.|+++.+--+.
T Consensus 85 ~~~~~~~~~~~~~g~id~lv~nAg~~ 110 (273)
T 1ae1_A 85 RDKLMQTVAHVFDGKLNILVNNAGVV 110 (273)
T ss_dssp HHHHHHHHHHHTTSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCcEEEECCCCC
Confidence 21 011 5789998875543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=86.53 E-value=1.3 Score=36.86 Aligned_cols=94 Identities=12% Similarity=0.082 Sum_probs=57.8
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC-
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE- 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~- 135 (221)
...+|.+||-+|+|. |+.++.+|+ +|+ +|+++|. ++-++.+++ .+. + .+ .+..+.
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa------------~--~v--i~~~~~~ 247 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGA------------T--EC--LNPKDYD 247 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTC------------S--EE--ECGGGCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC------------c--EE--Eeccccc
Confidence 345788999999986 888777775 588 7999996 556665543 221 1 11 122210
Q ss_pred CCc-----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCC-eEEEEE
Q 027594 136 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG 180 (221)
Q Consensus 136 ~~~-----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~-g~~~i~ 180 (221)
... ......+|+|+-+ .- ....+....++++++ |++++.
T Consensus 248 ~~~~~~i~~~t~gg~Dvvid~--~g----~~~~~~~~~~~l~~~~G~iv~~ 292 (373)
T 1p0f_A 248 KPIYEVICEKTNGGVDYAVEC--AG----RIETMMNALQSTYCGSGVTVVL 292 (373)
T ss_dssp SCHHHHHHHHTTSCBSEEEEC--SC----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred chHHHHHHHHhCCCCCEEEEC--CC----CHHHHHHHHHHHhcCCCEEEEE
Confidence 111 0112379999843 21 235667778889999 987764
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=86.39 E-value=1.5 Score=36.32 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=24.7
Q ss_pred CCCC-CeEEEeCC-Cc-cHHHHHHHH-hCCEEEEec
Q 027594 62 KLKG-KRVIELGA-GC-GVAGFGMAL-LGCNVITTD 93 (221)
Q Consensus 62 ~~~~-~~vLelGc-G~-G~~~l~~a~-~ga~v~~~D 93 (221)
..+| .+||=+|+ |. |+.++.+|+ +|++|+++.
T Consensus 164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~ 199 (364)
T 1gu7_A 164 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVI 199 (364)
T ss_dssp CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEE
T ss_pred cCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 3467 89999997 64 888887775 699977765
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=86.31 E-value=0.76 Score=36.68 Aligned_cols=82 Identities=10% Similarity=0.114 Sum_probs=48.4
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+..+++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+..
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~ 86 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG-------------HDVDGSSCDVTSTD 86 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-------------CCEEEEECCTTCHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEECCCCCHH
Confidence 45578899999987764 34455667999999996 445554444444322 35777776665543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.+--+.
T Consensus 87 ~v~~~~~~~~~~~g~id~lv~nAg~~ 112 (279)
T 3sju_A 87 EVHAAVAAAVERFGPIGILVNSAGRN 112 (279)
T ss_dssp HHHHHHHHHHHHHCSCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCCC
Confidence 321 1124789999876543
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=86.27 E-value=1 Score=35.84 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=48.6
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+...
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~~~~~ 85 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-------------VEADGRTCDVRSVPE 85 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEECCCCCHHH
Confidence 3578899999987654 33344567999999986 444444444443322 346667766655432
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--+
T Consensus 86 v~~~~~~~~~~~g~iD~lv~~Ag~ 109 (277)
T 2rhc_B 86 IEALVAAVVERYGPVDVLVNNAGR 109 (277)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 21 112478999887544
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.20 E-value=1.1 Score=35.28 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=49.1
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+..... ..++.+...|..+.+.
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~ 78 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP-----------DAEVLTTVADVSDEAQ 78 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT-----------TCCEEEEECCTTSHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-----------CceEEEEEccCCCHHH
Confidence 4578999999987664 34445567999999986 4444444444433210 1356667766655433
Q ss_pred ccc-------cCCCccEEEEcccc
Q 027594 138 IKA-------VAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~~-------~~~~fD~Vi~~d~~ 154 (221)
... ...+.|+++.+--+
T Consensus 79 v~~~~~~~~~~~g~id~lv~nAg~ 102 (267)
T 1iy8_A 79 VEAYVTATTERFGRIDGFFNNAGI 102 (267)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 210 12368999987543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.08 E-value=1.1 Score=34.68 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=50.6
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
+..++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ ...+.+...|....
T Consensus 9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~d~d~~ 76 (247)
T 3i1j_A 9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG------------QPQPLIIALNLENA 76 (247)
T ss_dssp TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------------SCCCEEEECCTTTC
T ss_pred CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC------------CCCceEEEeccccC
Confidence 456789999999987664 34445567999999996 445555555554433 13455555554221
Q ss_pred C--Ccc-------ccCCCccEEEEccccc
Q 027594 136 D--HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 136 ~--~~~-------~~~~~fD~Vi~~d~~y 155 (221)
. ... ....+.|+++.+--+.
T Consensus 77 ~~~~~~~~~~~~~~~~g~id~lv~nAg~~ 105 (247)
T 3i1j_A 77 TAQQYRELAARVEHEFGRLDGLLHNASII 105 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCccC
Confidence 1 110 1123789999876543
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=86.04 E-value=1 Score=35.40 Aligned_cols=80 Identities=19% Similarity=0.206 Sum_probs=48.5
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ .++.+...|..+...
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 70 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG-------------VEARSYVCDVTSEEA 70 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-------------SCEEEEECCTTCHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEecCCCHHH
Confidence 3578899999987764 33445567999999986 444444444433222 356667766655432
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--+
T Consensus 71 ~~~~~~~~~~~~g~id~lv~nAg~ 94 (262)
T 1zem_A 71 VIGTVDSVVRDFGKIDFLFNNAGY 94 (262)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 21 112368999987543
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=85.96 E-value=1.3 Score=34.97 Aligned_cols=84 Identities=11% Similarity=-0.023 Sum_probs=52.3
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+..... ..++.+...|..+..
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dv~~~~ 72 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFP-----------GARLFASVCDVLDAL 72 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHST-----------TCCEEEEECCTTCHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-----------CceEEEEeCCCCCHH
Confidence 45688999999988764 34455667999999996 4455555554443211 234677776665543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.+--+.
T Consensus 73 ~v~~~~~~~~~~~g~id~lvnnAg~~ 98 (265)
T 3lf2_A 73 QVRAFAEACERTLGCASILVNNAGQG 98 (265)
T ss_dssp HHHHHHHHHHHHHCSCSEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 221 1124789998876543
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.96 E-value=2.5 Score=32.66 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=50.2
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+...+ .++.+...|..+....
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~ 69 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG-------------FKARGLVLNISDIESI 69 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEecCCCHHHH
Confidence 367899999987664 34445667999999986 445555544444432 3567777666554322
Q ss_pred c-------ccCCCccEEEEccccc
Q 027594 139 K-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~y 155 (221)
. ....+.|+++.+--+.
T Consensus 70 ~~~~~~~~~~~~~id~li~~Ag~~ 93 (247)
T 3lyl_A 70 QNFFAEIKAENLAIDILVNNAGIT 93 (247)
T ss_dssp HHHHHHHHHTTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 1 1234789999876554
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=85.79 E-value=0.99 Score=36.86 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=52.8
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+.+++||=-|++.|+ ++..+++.|++|++++. .+.++.+...+...+. ..++.+..+|..+...
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~~~~~ 73 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGS-----------GPEVMGVQLDVASREG 73 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEECCTTCHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCeEEEEECCCCCHHH
Confidence 4578899999988764 34445567999999996 4455555555544331 2357777777665433
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--+.
T Consensus 74 v~~~~~~~~~~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 74 FKMAADEVEARFGPVSILCNNAGVN 98 (319)
T ss_dssp HHHHHHHHHHHTCCEEEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcC
Confidence 21 1124789999876543
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=85.69 E-value=4.1 Score=33.57 Aligned_cols=31 Identities=29% Similarity=0.329 Sum_probs=23.8
Q ss_pred CCCCCeEEEeCC-Cc-cHHHHHHHH-hCCEEEEe
Q 027594 62 KLKGKRVIELGA-GC-GVAGFGMAL-LGCNVITT 92 (221)
Q Consensus 62 ~~~~~~vLelGc-G~-G~~~l~~a~-~ga~v~~~ 92 (221)
..+|.+||=+|+ |. |+.++.+|+ +|++++++
T Consensus 165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~ 198 (357)
T 1zsy_A 165 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINV 198 (357)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred cCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEE
Confidence 457889999997 54 888888876 59986554
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=85.57 E-value=1.1 Score=35.06 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=47.8
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+..
T Consensus 10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~~ 76 (260)
T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEG-------------LSVTGTVCHVGKAE 76 (260)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCHH
Confidence 34578899999987653 33344567999999986 444444444343322 34666666665443
Q ss_pred Cccc-------cCCCccEEEEcccc
Q 027594 137 HIKA-------VAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~~-------~~~~fD~Vi~~d~~ 154 (221)
.... ...+.|+++.+--+
T Consensus 77 ~~~~~~~~~~~~~g~iD~lv~~Ag~ 101 (260)
T 2zat_A 77 DRERLVAMAVNLHGGVDILVSNAAV 101 (260)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 2210 11378999877543
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=85.54 E-value=2 Score=35.30 Aligned_cols=33 Identities=27% Similarity=0.417 Sum_probs=24.1
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCC-EEEEecc
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGC-NVITTDQ 94 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga-~v~~~D~ 94 (221)
...+++++|=+|+| |. +...++..|+ +|+.++.
T Consensus 150 ~~l~gk~~lVlGaG-G~g~aia~~L~~~Ga~~V~i~nR 186 (315)
T 3tnl_A 150 HDIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNR 186 (315)
T ss_dssp CCCTTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEEC
T ss_pred CCccCCEEEEECCC-hHHHHHHHHHHHCCCCEEEEEEC
Confidence 45688999999998 43 3444566798 7888874
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=85.52 E-value=1.6 Score=36.41 Aligned_cols=94 Identities=17% Similarity=0.173 Sum_probs=57.3
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC-
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE- 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~- 135 (221)
...+|.+||-+|+|. |+.++.+|+ +|+ +|+++|. ++-++.+++ .+. + .+ ++..+.
T Consensus 192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa------------~--~v--i~~~~~~ 251 (376)
T 1e3i_A 192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGA------------T--DC--LNPRELD 251 (376)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC------------S--EE--ECGGGCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC------------c--EE--Ecccccc
Confidence 345788999999986 887777775 588 7999996 555565542 221 1 11 122210
Q ss_pred CCc-----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCC-eEEEEE
Q 027594 136 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG 180 (221)
Q Consensus 136 ~~~-----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~-g~~~i~ 180 (221)
... ......+|+|+-+ .- ....+....++++++ |++++.
T Consensus 252 ~~~~~~v~~~~~~g~Dvvid~--~G----~~~~~~~~~~~l~~~~G~iv~~ 296 (376)
T 1e3i_A 252 KPVQDVITELTAGGVDYSLDC--AG----TAQTLKAAVDCTVLGWGSCTVV 296 (376)
T ss_dssp SCHHHHHHHHHTSCBSEEEES--SC----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred chHHHHHHHHhCCCccEEEEC--CC----CHHHHHHHHHHhhcCCCEEEEE
Confidence 110 0112379999843 21 245667778889999 987754
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.48 E-value=0.54 Score=37.70 Aligned_cols=81 Identities=25% Similarity=0.257 Sum_probs=49.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+... ..++.+...|..+...
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~ 71 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG-------------GGEAAALAGDVGDEAL 71 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT-------------TCCEEECCCCTTCHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHHH
Confidence 4578999999988764 34455677999999996 44555444433322 2356666666554432
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--+.
T Consensus 72 v~~~~~~~~~~~g~iD~lvnnAg~~ 96 (280)
T 3tox_A 72 HEALVELAVRRFGGLDTAFNNAGAL 96 (280)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 21 1124789999876543
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=85.24 E-value=1.3 Score=35.17 Aligned_cols=82 Identities=16% Similarity=0.186 Sum_probs=49.6
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-------------hhHHHHHHHHHHhhhccccCCCCCCCCCc
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS 124 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|.. +.++.+...+... ..+
T Consensus 6 ~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 72 (281)
T 3s55_A 6 ADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT-------------GRR 72 (281)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT-------------TCC
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc-------------CCe
Confidence 45688999999988764 344456679999998852 2233333333322 245
Q ss_pred eEEEEEEecCCCCcc-------ccCCCccEEEEccccc
Q 027594 125 IQAVELDWGNEDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 125 v~~~~~dw~~~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
+.+...|..+.+... ....+.|+++.+--+.
T Consensus 73 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 110 (281)
T 3s55_A 73 CISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGIS 110 (281)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 777777765543321 1124789999876544
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=85.24 E-value=0.62 Score=38.37 Aligned_cols=44 Identities=11% Similarity=-0.000 Sum_probs=32.6
Q ss_pred CCCccEEEEcccccCC-------c----CHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 142 APPFDYIIGTDVVYAE-------H----LLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~-------~----~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.++||+|+..+|+... + .+...+..+.++|+|+|.+++....+.
T Consensus 56 ~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~ 110 (319)
T 1eg2_A 56 DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQY 110 (319)
T ss_dssp TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCC
T ss_pred cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCccc
Confidence 5689999998885432 1 345667777899999999998765543
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=85.22 E-value=1.2 Score=34.92 Aligned_cols=81 Identities=16% Similarity=0.216 Sum_probs=48.0
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+.... ..++.+...|..+.+..
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~~ 72 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF------------GVRVLEVAVDVATPEGV 72 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTSHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc------------CCceEEEEcCCCCHHHH
Confidence 568899999987653 33344567999999986 444444444333221 13466677666554322
Q ss_pred cc-------cCCCccEEEEccccc
Q 027594 139 KA-------VAPPFDYIIGTDVVY 155 (221)
Q Consensus 139 ~~-------~~~~fD~Vi~~d~~y 155 (221)
.. ...+.|+++.+--+.
T Consensus 73 ~~~~~~~~~~~g~id~lv~~Ag~~ 96 (263)
T 3ai3_A 73 DAVVESVRSSFGGADILVNNAGTG 96 (263)
T ss_dssp HHHHHHHHHHHSSCSEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 11 113689998875543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=85.19 E-value=1.7 Score=36.22 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=57.6
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC-
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE- 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~- 135 (221)
...+|.+||-+|+|. |..++.+|+ +|+ +|+++|. ++-++.+++ .+. + .+ ++..+.
T Consensus 189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa------------~--~v--i~~~~~~ 248 (374)
T 1cdo_A 189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGA------------T--DF--VNPNDHS 248 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC------------C--EE--ECGGGCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCC------------c--eE--Eeccccc
Confidence 345788999999886 777777775 588 7999996 556665542 221 1 11 222210
Q ss_pred CCc-----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCC-eEEEEE
Q 027594 136 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG 180 (221)
Q Consensus 136 ~~~-----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~-g~~~i~ 180 (221)
... ......+|+|+-+ . .....+....++++++ |++++.
T Consensus 249 ~~~~~~~~~~~~~g~D~vid~--~----g~~~~~~~~~~~l~~~~G~iv~~ 293 (374)
T 1cdo_A 249 EPISQVLSKMTNGGVDFSLEC--V----GNVGVMRNALESCLKGWGVSVLV 293 (374)
T ss_dssp SCHHHHHHHHHTSCBSEEEEC--S----CCHHHHHHHHHTBCTTTCEEEEC
T ss_pred hhHHHHHHHHhCCCCCEEEEC--C----CCHHHHHHHHHHhhcCCcEEEEE
Confidence 111 0112379999854 1 1235667778899999 987764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=85.15 E-value=0.91 Score=37.92 Aligned_cols=40 Identities=38% Similarity=0.502 Sum_probs=28.2
Q ss_pred CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHHHH
Q 027594 63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a-~~ga~v~~~D~-~~~l~~~~ 102 (221)
.++++||=+|+|. |...+.++ .+|++|+++|. ++-++.++
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~ 207 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLE 207 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 4568999999975 65555444 46999999996 44555444
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.10 E-value=1.5 Score=34.68 Aligned_cols=83 Identities=18% Similarity=0.264 Sum_probs=49.1
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+.... ..++.+...|..+..
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~~ 84 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY------------GVETMAFRCDVSNYE 84 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCeEEEEEcCCCCHH
Confidence 45678999999987653 34445567999999986 444444444331111 134666676665543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.+--+.
T Consensus 85 ~v~~~~~~~~~~~g~iD~lvnnAg~~ 110 (267)
T 1vl8_A 85 EVKKLLEAVKEKFGKLDTVVNAAGIN 110 (267)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcC
Confidence 221 0123689998875443
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=85.08 E-value=1.3 Score=34.45 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=46.6
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++++||=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+....
T Consensus 11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~D~~~~~~~ 77 (260)
T 3awd_A 11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG-------------HDVSSVVMDVTNTESV 77 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEecCCCHHHH
Confidence 568899999976553 23334456999999986 334443433333322 3567777666554322
Q ss_pred cc-------cCCCccEEEEcccc
Q 027594 139 KA-------VAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~~-------~~~~fD~Vi~~d~~ 154 (221)
.. ...+.|+|+.+--+
T Consensus 78 ~~~~~~~~~~~~~id~vi~~Ag~ 100 (260)
T 3awd_A 78 QNAVRSVHEQEGRVDILVACAGI 100 (260)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 11 01368999887543
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=85.06 E-value=1.3 Score=34.93 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=49.7
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+..... ...+.....|..+...
T Consensus 7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~D~~~~~~ 75 (267)
T 3t4x_A 7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYP-----------DAILQPVVADLGTEQG 75 (267)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCT-----------TCEEEEEECCTTSHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEecCCCCHHH
Confidence 4578899999987664 34445667999999996 4455544444443321 2345566655544322
Q ss_pred cc---ccCCCccEEEEccccc
Q 027594 138 IK---AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~---~~~~~fD~Vi~~d~~y 155 (221)
.. ..-.+.|+++.+--+.
T Consensus 76 ~~~~~~~~g~id~lv~nAg~~ 96 (267)
T 3t4x_A 76 CQDVIEKYPKVDILINNLGIF 96 (267)
T ss_dssp HHHHHHHCCCCSEEEECCCCC
T ss_pred HHHHHHhcCCCCEEEECCCCC
Confidence 11 1124789998875544
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=84.93 E-value=1.4 Score=35.48 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=50.3
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-------------hhHHHHHHHHHHhhhccccCCCCCCCCCc
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS 124 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|.. +.++.+...+... ..+
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 90 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL-------------GRR 90 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT-------------TCC
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc-------------CCc
Confidence 34678999999988774 445566779999998752 2333333333332 246
Q ss_pred eEEEEEEecCCCCcc-------ccCCCccEEEEccccc
Q 027594 125 IQAVELDWGNEDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 125 v~~~~~dw~~~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
+.+..+|..+..... ....+.|++|.+--+.
T Consensus 91 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 91 IIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred eEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 777777766543321 1124789998875543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=84.89 E-value=1.3 Score=35.28 Aligned_cols=82 Identities=22% Similarity=0.217 Sum_probs=50.4
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--------------hhhHHHHHHHHHHhhhccccCCCCCCCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--------------IEVLPLLKRNVEWNTSRISQMNPGSDLLG 123 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~--------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~ 123 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|. .+.++.+.+.+... ..
T Consensus 11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 77 (280)
T 3pgx_A 11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ-------------GR 77 (280)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT-------------TC
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-------------CC
Confidence 45688999999988764 44455677999999874 22333333333332 24
Q ss_pred ceEEEEEEecCCCCcc-------ccCCCccEEEEccccc
Q 027594 124 SIQAVELDWGNEDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 124 ~v~~~~~dw~~~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
++.+...|..+..... ....+.|+++.+--+.
T Consensus 78 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~ 116 (280)
T 3pgx_A 78 KALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVL 116 (280)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 5677776665543321 1124789999875544
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.86 E-value=1 Score=36.01 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=48.0
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ ...+.+..+|..+.+.
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~d~~~ 97 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT------------GNIVRAVVCDVGDPDQ 97 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------------CCeEEEEEcCCCCHHH
Confidence 4578999999987664 34445567999999996 445555554444333 1335677766655433
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--+
T Consensus 98 v~~~~~~~~~~~g~iD~lvnnAG~ 121 (281)
T 4dry_A 98 VAALFAAVRAEFARLDLLVNNAGS 121 (281)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 21 112478999987654
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=84.77 E-value=1.3 Score=35.20 Aligned_cols=81 Identities=23% Similarity=0.268 Sum_probs=49.5
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-----------------hhHHHHHHHHHHhhhccccCCCCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-----------------EVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~-----------------~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|.. +.++.+...+...
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 74 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH------------ 74 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT------------
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc------------
Confidence 34678999999998774 445566779999998752 2333332222222
Q ss_pred CCCceEEEEEEecCCCCcc-------ccCCCccEEEEcccc
Q 027594 121 LLGSIQAVELDWGNEDHIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~-------~~~~~fD~Vi~~d~~ 154 (221)
..++.+..+|..+.+... ....+.|+++.+--+
T Consensus 75 -~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~ 114 (286)
T 3uve_A 75 -NRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGI 114 (286)
T ss_dssp -TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred -CCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 246777777766543321 112478999987654
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.61 E-value=1.6 Score=34.15 Aligned_cols=82 Identities=15% Similarity=0.031 Sum_probs=48.6
Q ss_pred CCCCCCCeEEEeCCC--ccH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEec
Q 027594 60 PSKLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (221)
Q Consensus 60 ~~~~~~~~vLelGcG--~G~---~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~ 133 (221)
+...++++||=.|++ .|+ ++..+++.|++|++++.. ...+.+++-.+.. ..+.+...|..
T Consensus 9 ~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~ 74 (271)
T 3ek2_A 9 MGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF--------------GSELVFPCDVA 74 (271)
T ss_dssp CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT--------------TCCCEEECCTT
T ss_pred ccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc--------------CCcEEEECCCC
Confidence 356789999999975 443 344455679999999863 3333333332222 23566676665
Q ss_pred CCCCcc-------ccCCCccEEEEccccc
Q 027594 134 NEDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 134 ~~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
+..... ....+.|++|.+--+.
T Consensus 75 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~ 103 (271)
T 3ek2_A 75 DDAQIDALFASLKTHWDSLDGLVHSIGFA 103 (271)
T ss_dssp CHHHHHHHHHHHHHHCSCEEEEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCccC
Confidence 543221 1124789999875543
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=84.59 E-value=1.8 Score=35.90 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=57.6
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC-
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE- 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~- 135 (221)
...+|.+||-+|+|. |..++.+|+ +|+ +|+++|. ++-++.+++ .+. + .+ .+..+.
T Consensus 187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa------------~--~v--i~~~~~~ 246 (373)
T 2fzw_A 187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGA------------T--EC--INPQDFS 246 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTC------------S--EE--ECGGGCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCC------------c--eE--ecccccc
Confidence 345788999999886 777777775 588 7999996 556666553 221 1 11 122210
Q ss_pred CCc-----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCC-eEEEEE
Q 027594 136 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG 180 (221)
Q Consensus 136 ~~~-----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~-g~~~i~ 180 (221)
... ......+|+|+-+ .- ....+....++++++ |++++.
T Consensus 247 ~~~~~~v~~~~~~g~D~vid~--~g----~~~~~~~~~~~l~~~~G~iv~~ 291 (373)
T 2fzw_A 247 KPIQEVLIEMTDGGVDYSFEC--IG----NVKVMRAALEACHKGWGVSVVV 291 (373)
T ss_dssp SCHHHHHHHHTTSCBSEEEEC--SC----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred ccHHHHHHHHhCCCCCEEEEC--CC----cHHHHHHHHHhhccCCcEEEEE
Confidence 110 0112379999854 21 235667778899999 987764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=84.56 E-value=4.9 Score=28.19 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=25.8
Q ss_pred CCeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHH
Q 027594 65 GKRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 65 ~~~vLelGcG~-G~-~~l~~a~~ga~v~~~D~-~~~l~~~~ 102 (221)
..+|+=+|||. |. ++-.+...|.+|+++|. ++.++.++
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~ 47 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELR 47 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 35899999975 43 34444556899999997 55555444
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=84.51 E-value=4.8 Score=32.71 Aligned_cols=101 Identities=16% Similarity=0.101 Sum_probs=56.3
Q ss_pred CCCCCeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+..++|.=||+|. | .++..+++.|.+|++. . ++.++.+++ +++... .+ ..... ........ .
T Consensus 16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~----~g~~~~--~~----~~~~~-~~~~~~~~--~ 81 (318)
T 3hwr_A 16 YFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEA----TGLRLE--TQ----SFDEQ-VKVSASSD--P 81 (318)
T ss_dssp ----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH----HCEEEE--CS----SCEEE-ECCEEESC--G
T ss_pred hccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh----CCeEEE--cC----CCcEE-EeeeeeCC--H
Confidence 45678999999997 4 5777778889999888 5 444544443 232111 01 00000 00000111 1
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. ....+|+|+.+=.-+ ..+.+++.+...++++..++..
T Consensus 82 ~-~~~~~D~vilavk~~---~~~~~l~~l~~~l~~~~~iv~~ 119 (318)
T 3hwr_A 82 S-AVQGADLVLFCVKST---DTQSAALAMKPALAKSALVLSL 119 (318)
T ss_dssp G-GGTTCSEEEECCCGG---GHHHHHHHHTTTSCTTCEEEEE
T ss_pred H-HcCCCCEEEEEcccc---cHHHHHHHHHHhcCCCCEEEEe
Confidence 1 125789998874444 4678888888888888765543
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.47 E-value=2.1 Score=33.50 Aligned_cols=77 Identities=17% Similarity=0.324 Sum_probs=46.9
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+...+ .++.+...|..+....
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~v 69 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG-------------GQCVPVVCDSSQESEV 69 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS-------------SEEEEEECCTTSHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC-------------CceEEEECCCCCHHHH
Confidence 467899999977653 33344567999999986 444444444443322 3566677666554322
Q ss_pred c----c----cCCCccEEEEcc
Q 027594 139 K----A----VAPPFDYIIGTD 152 (221)
Q Consensus 139 ~----~----~~~~fD~Vi~~d 152 (221)
. . ...+.|+++.+-
T Consensus 70 ~~~~~~~~~~~~g~id~lvnnA 91 (260)
T 2qq5_A 70 RSLFEQVDREQQGRLDVLVNNA 91 (260)
T ss_dssp HHHHHHHHHHHTTCCCEEEECC
T ss_pred HHHHHHHHHhcCCCceEEEECC
Confidence 1 0 035789999876
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=84.46 E-value=1.6 Score=35.95 Aligned_cols=91 Identities=16% Similarity=0.063 Sum_probs=55.8
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-h--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC-CCC
Q 027594 64 KGKRVIELGAGC-GVAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-EDH 137 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~-~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~-~~~ 137 (221)
+|.+||-+|+|. |+.++.+|+ + |++|+++|. ++-++.+++ .+. +. + .+..+ .+.
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~~--v--i~~~~~~~~ 229 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGA------------DY--V--SEMKDAESL 229 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTC------------SE--E--ECHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCC------------CE--E--eccccchHH
Confidence 789999999986 777777775 6 899999996 445555543 221 11 1 11111 000
Q ss_pred c-c-ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 I-K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 ~-~-~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. . .....+|+|+-+ .- ....+....++++++|++++.
T Consensus 230 ~~~~~~g~g~D~vid~--~g----~~~~~~~~~~~l~~~G~iv~~ 268 (344)
T 2h6e_A 230 INKLTDGLGASIAIDL--VG----TEETTYNLGKLLAQEGAIILV 268 (344)
T ss_dssp HHHHHTTCCEEEEEES--SC----CHHHHHHHHHHEEEEEEEEEC
T ss_pred HHHhhcCCCccEEEEC--CC----ChHHHHHHHHHhhcCCEEEEe
Confidence 0 0 113379999854 21 234567777889999987664
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=84.44 E-value=2.9 Score=33.21 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=48.1
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+ + .++.+...|..+...
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~d~~~ 89 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---G-------------CGAAACRVDVSDEQQ 89 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---C-------------SSCEEEECCTTCHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---C-------------CcceEEEecCCCHHH
Confidence 4678999999988774 44556677999999996 34443333222 1 345666766655432
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--+.
T Consensus 90 v~~~~~~~~~~~g~iD~lvnnAg~~ 114 (277)
T 3gvc_A 90 IIAMVDACVAAFGGVDKLVANAGVV 114 (277)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 21 1124789999876554
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=84.41 E-value=0.95 Score=35.62 Aligned_cols=81 Identities=25% Similarity=0.352 Sum_probs=50.7
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...++++||=.|++.|+ ++..+++.|++|++++. .+.++.+...+...+ .++.+..+|..+.+
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~ 91 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG-------------GEAESHACDLSHSD 91 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHH
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC-------------CceeEEEecCCCHH
Confidence 34678999999987653 23344567999999986 445555555544432 35677776665543
Q ss_pred Ccc-------ccCCCccEEEEcccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~ 154 (221)
... ....+.|+++.+--+
T Consensus 92 ~v~~~~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 92 AIAAFATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc
Confidence 321 112468999987654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.38 E-value=1 Score=36.10 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=48.8
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+++++|=-|++.|+ ++..+++.|++|+++|. .+.++.+...+... ..++.+...|..+...
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d~~~ 91 (283)
T 3v8b_A 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA-------------GGQAIALEADVSDELQ 91 (283)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT-------------TCCEEEEECCTTCHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence 3468899999988764 34455667999999996 44444444433322 2456777766655432
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--+
T Consensus 92 v~~~~~~~~~~~g~iD~lVnnAg~ 115 (283)
T 3v8b_A 92 MRNAVRDLVLKFGHLDIVVANAGI 115 (283)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 21 112478999887554
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=84.34 E-value=1.1 Score=34.65 Aligned_cols=80 Identities=24% Similarity=0.288 Sum_probs=46.6
Q ss_pred CCCCCeEEEeCCCccHHHHH----HHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~----~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.+++++||=.|++.| +|.. +++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+..
T Consensus 8 ~~~~~~vlVtGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~ 73 (255)
T 1fmc_A 8 RLDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------------GQAFACRCDITSEQ 73 (255)
T ss_dssp CCTTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred CCCCCEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC-------------CceEEEEcCCCCHH
Confidence 357889999997544 3433 3456899999986 444444444443322 35666666665443
Q ss_pred Cccc-------cCCCccEEEEccccc
Q 027594 137 HIKA-------VAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~~-------~~~~fD~Vi~~d~~y 155 (221)
.... ...++|+||.+--+.
T Consensus 74 ~~~~~~~~~~~~~~~~d~vi~~Ag~~ 99 (255)
T 1fmc_A 74 ELSALADFAISKLGKVDILVNNAGGG 99 (255)
T ss_dssp HHHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 2211 013789998875443
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=84.30 E-value=1.8 Score=35.71 Aligned_cols=44 Identities=20% Similarity=0.139 Sum_probs=34.2
Q ss_pred CCeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh
Q 027594 65 GKRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (221)
Q Consensus 65 ~~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n 108 (221)
..+|-=||||+ | -++..+|..|.+|++.|. ++.++.+..+++.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~ 52 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKE 52 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 35899999998 5 367777888999999997 66777777776654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=84.29 E-value=1.7 Score=34.02 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=51.8
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+..... ...++.+..+|..+....
T Consensus 5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v 74 (250)
T 3nyw_A 5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNK----------HVQEPIVLPLDITDCTKA 74 (250)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCT----------TSCCCEEEECCTTCHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcc----------ccCcceEEeccCCCHHHH
Confidence 467899999988764 34455677999999996 4455555555544321 014567777666554322
Q ss_pred c-------ccCCCccEEEEccccc
Q 027594 139 K-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~y 155 (221)
. ....+.|+++.+--+.
T Consensus 75 ~~~~~~~~~~~g~iD~lvnnAg~~ 98 (250)
T 3nyw_A 75 DTEIKDIHQKYGAVDILVNAAAMF 98 (250)
T ss_dssp HHHHHHHHHHHCCEEEEEECCCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCcC
Confidence 1 1124789999876554
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=84.10 E-value=2.4 Score=33.99 Aligned_cols=79 Identities=11% Similarity=0.175 Sum_probs=44.2
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+++++|=+|+..|+ ++..+++.|++|+.++. .+-.+.+.+.+.... .+.+...|+.+.+.
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~--------------~~~~~~~D~~~~~~ 181 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--------------KVNVTAAETADDAS 181 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--------------TCCCEEEECCSHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEecCCCHHH
Confidence 3578999999944332 34445667999999986 333333333232211 13444566654433
Q ss_pred ccccCCCccEEEEcccc
Q 027594 138 IKAVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~ 154 (221)
....-..+|+|+.+-.+
T Consensus 182 ~~~~~~~~DvlVn~ag~ 198 (287)
T 1lu9_A 182 RAEAVKGAHFVFTAGAI 198 (287)
T ss_dssp HHHHTTTCSEEEECCCT
T ss_pred HHHHHHhCCEEEECCCc
Confidence 22223458999887653
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.09 E-value=1.2 Score=35.43 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=48.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+. ...++.+...|..+.+..
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v 73 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV----------SEKQVNSVVADVTTEDGQ 73 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC----------CGGGEEEEECCTTSHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC----------CCcceEEEEecCCCHHHH
Confidence 467899999987663 33445567999999986 4444444444433210 011567777776654332
Q ss_pred cc-------cCCCccEEEEcccc
Q 027594 139 KA-------VAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~~-------~~~~fD~Vi~~d~~ 154 (221)
.. ...+.|+++.+--+
T Consensus 74 ~~~~~~~~~~~g~iD~lv~nAg~ 96 (280)
T 1xkq_A 74 DQIINSTLKQFGKIDVLVNNAGA 96 (280)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCC
Confidence 10 11368999987543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=83.92 E-value=2 Score=35.66 Aligned_cols=94 Identities=12% Similarity=0.098 Sum_probs=57.2
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC-
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE- 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~- 135 (221)
...+|.+||-+|+|. |..++.+|+ +|+ +|+++|. ++-++.+++ .+. + .+ ++..+.
T Consensus 188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa------------~--~v--i~~~~~~ 247 (374)
T 2jhf_A 188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGA------------T--EC--VNPQDYK 247 (374)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC------------S--EE--ECGGGCS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC------------c--eE--ecccccc
Confidence 345788999999886 777777775 588 7999996 556665542 221 1 11 222210
Q ss_pred CCc-----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCC-eEEEEE
Q 027594 136 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLG 180 (221)
Q Consensus 136 ~~~-----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~-g~~~i~ 180 (221)
... ......+|+|+-+ .- ....+....++++++ |++++.
T Consensus 248 ~~~~~~~~~~~~~g~D~vid~--~g----~~~~~~~~~~~l~~~~G~iv~~ 292 (374)
T 2jhf_A 248 KPIQEVLTEMSNGGVDFSFEV--IG----RLDTMVTALSCCQEAYGVSVIV 292 (374)
T ss_dssp SCHHHHHHHHTTSCBSEEEEC--SC----CHHHHHHHHHHBCTTTCEEEEC
T ss_pred hhHHHHHHHHhCCCCcEEEEC--CC----CHHHHHHHHHHhhcCCcEEEEe
Confidence 110 0112379999854 21 235567777889999 987653
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=83.73 E-value=5.8 Score=31.58 Aligned_cols=104 Identities=23% Similarity=0.247 Sum_probs=54.4
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCC-CCCCC-----CCceEEEEEEecCCC
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN-PGSDL-----LGSIQAVELDWGNED 136 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~-~~~~~-----~~~v~~~~~dw~~~~ 136 (221)
++|.=||+|+ | .++..++..|.+|++.|. ++.++.+++.+..+........ ..... ..++... .
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-------~ 77 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS-------D 77 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE-------S
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe-------C
Confidence 4788889987 4 356666778999999997 5566666655433211000000 00000 0012221 0
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
.....-...|+||.+-+ -..+....+++.+...++|+..+
T Consensus 78 ~~~~~~~~aDlVi~av~-~~~~~~~~v~~~l~~~~~~~~il 117 (283)
T 4e12_A 78 DLAQAVKDADLVIEAVP-ESLDLKRDIYTKLGELAPAKTIF 117 (283)
T ss_dssp CHHHHTTTCSEEEECCC-SCHHHHHHHHHHHHHHSCTTCEE
T ss_pred CHHHHhccCCEEEEecc-CcHHHHHHHHHHHHhhCCCCcEE
Confidence 11111246788887632 12234566777777777777654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=83.61 E-value=3.5 Score=33.75 Aligned_cols=93 Identities=24% Similarity=0.215 Sum_probs=55.3
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH- 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~- 137 (221)
..+|.+||-+|+|. |...+.+|+ .|++|+++|. ++-++.+++ .+. + .+ .+..+.+.
T Consensus 162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~--~~--~d~~~~~~~ 221 (339)
T 1rjw_A 162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGA------------D--LV--VNPLKEDAA 221 (339)
T ss_dssp CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC------------S--EE--ECTTTSCHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCC------------C--EE--ecCCCccHH
Confidence 44688999999975 777776664 6899999996 445555542 221 1 11 22221110
Q ss_pred --ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 --IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 --~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.......+|+|+-+-. ....+....++++++|++++.
T Consensus 222 ~~~~~~~~~~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~ 260 (339)
T 1rjw_A 222 KFMKEKVGGVHAAVVTAV------SKPAFQSAYNSIRRGGACVLV 260 (339)
T ss_dssp HHHHHHHSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHhCCCCEEEECCC------CHHHHHHHHHHhhcCCEEEEe
Confidence 0000146899885421 234567777888999987653
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=83.53 E-value=3.1 Score=33.83 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=54.8
Q ss_pred CeEEEeCCCc--cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~--G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
++|+=+|+|. +.++..+++.|.+|++.+.++ .+ .+..+++..... . .+...+...... ........
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~----~i~~~Gl~~~~~-~----~g~~~~~~~~~~--~~~~~~~~ 70 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-YE----TVKAKGIRIRSA-T----LGDYTFRPAAVV--RSAAELET 70 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-HH----HHHHHCEEEEET-T----TCCEEECCSCEE--SCGGGCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-HH----HHHhCCcEEeec-C----CCcEEEeeeeeE--CCHHHcCC
Confidence 5788899997 456777778899999999754 22 233343311100 0 111211000000 11111224
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.+|+||.+=..+... .+++.+..+++++..++..
T Consensus 71 ~~DlVilavK~~~~~---~~l~~l~~~l~~~t~Iv~~ 104 (320)
T 3i83_A 71 KPDCTLLCIKVVEGA---DRVGLLRDAVAPDTGIVLI 104 (320)
T ss_dssp CCSEEEECCCCCTTC---CHHHHHTTSCCTTCEEEEE
T ss_pred CCCEEEEecCCCChH---HHHHHHHhhcCCCCEEEEe
Confidence 799998875555533 4667777778887765443
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=83.33 E-value=2.3 Score=34.08 Aligned_cols=63 Identities=16% Similarity=0.053 Sum_probs=38.9
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEec-c-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTD-Q-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D-~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++++++|=.|++.|+ ++..+++.|++|+++| . ++.++.+.+.+.... ..++.+...|..+..
T Consensus 6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~~ 73 (291)
T 1e7w_A 6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR------------PNSAITVQADLSNVA 73 (291)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS------------TTCEEEEECCCSSSC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhc------------CCeeEEEEeecCCcc
Confidence 3578899999987764 3344556799999998 6 344544444443111 135677777776655
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=83.30 E-value=1.5 Score=35.62 Aligned_cols=82 Identities=23% Similarity=0.208 Sum_probs=49.5
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-------------hhHHHHHHHHHHhhhccccCCCCCCCCCc
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS 124 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|.. +.++.+.+.+... ..+
T Consensus 42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 108 (317)
T 3oec_A 42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ-------------GRR 108 (317)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT-------------TCC
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc-------------CCe
Confidence 34678999999988764 444556779999998742 2333333333322 245
Q ss_pred eEEEEEEecCCCCcc-------ccCCCccEEEEccccc
Q 027594 125 IQAVELDWGNEDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 125 v~~~~~dw~~~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
+.+...|..+..... ....+.|++|.+--+.
T Consensus 109 ~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~ 146 (317)
T 3oec_A 109 IIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGIS 146 (317)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 777777765543321 1124789999875543
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=83.24 E-value=1.4 Score=34.63 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=49.1
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEe-cc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++++++|=-|++.|+ ++..+++.|++|+++ +. .+..+.+...++..+ .++.+...|..+..
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~ 71 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG-------------RSALAIKADLTNAA 71 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT-------------SCCEEEECCTTCHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-------------CceEEEEcCCCCHH
Confidence 4678999999988764 444556779999888 44 334444444443322 35667776665543
Q ss_pred Ccc-------ccCCCccEEEEcccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~ 154 (221)
... ....+.|+++.+--.
T Consensus 72 ~v~~~~~~~~~~~g~id~lv~nAg~ 96 (259)
T 3edm_A 72 EVEAAISAAADKFGEIHGLVHVAGG 96 (259)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECCCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCc
Confidence 321 112478999887543
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=82.95 E-value=11 Score=28.64 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=43.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHH----HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCce-EEEEEEecC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSI-QAVELDWGN 134 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~----a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v-~~~~~dw~~ 134 (221)
..+++++||=.|+. |.+|..+ ++.|++|++++. ++.++.+.. ..+ .+...|..
T Consensus 17 ~~l~~~~ilVtGat-G~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-------------------~~~~~~~~~Dl~- 75 (236)
T 3e8x_A 17 LYFQGMRVLVVGAN-GKVARYLLSELKNKGHEPVAMVRNEEQGPELRE-------------------RGASDIVVANLE- 75 (236)
T ss_dssp ----CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-------------------TTCSEEEECCTT-
T ss_pred cCcCCCeEEEECCC-ChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh-------------------CCCceEEEcccH-
Confidence 45688999999964 4444433 456899999986 443332211 135 66676665
Q ss_pred CCCccccCCCccEEEEcccccCCc
Q 027594 135 EDHIKAVAPPFDYIIGTDVVYAEH 158 (221)
Q Consensus 135 ~~~~~~~~~~fD~Vi~~d~~y~~~ 158 (221)
......-...|+|+.+-......
T Consensus 76 -~~~~~~~~~~D~vi~~ag~~~~~ 98 (236)
T 3e8x_A 76 -EDFSHAFASIDAVVFAAGSGPHT 98 (236)
T ss_dssp -SCCGGGGTTCSEEEECCCCCTTS
T ss_pred -HHHHHHHcCCCEEEECCCCCCCC
Confidence 22322335789999876554433
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=82.94 E-value=1.6 Score=34.16 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=46.0
Q ss_pred CCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhh--HHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEV--LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 65 ~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~--l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++|=.|++.|+ ++..+++.|++|+++|. ++. ++.+.+.+... ..++.+...|..+....
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~v 68 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA-------------DQKAVFVGLDVTDKANF 68 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT-------------TCCEEEEECCTTCHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHH
Confidence 5788989977653 33445567999999986 333 44444333322 13567777666554322
Q ss_pred cc-------cCCCccEEEEccccc
Q 027594 139 KA-------VAPPFDYIIGTDVVY 155 (221)
Q Consensus 139 ~~-------~~~~fD~Vi~~d~~y 155 (221)
.. ...+.|+++.+--+.
T Consensus 69 ~~~~~~~~~~~g~iD~lv~nAg~~ 92 (258)
T 3a28_C 69 DSAIDEAAEKLGGFDVLVNNAGIA 92 (258)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCCC
Confidence 10 113789998875543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=82.79 E-value=0.63 Score=39.01 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=26.8
Q ss_pred CCCCCeEEEeCCCc-cHHHHH-HHHhCCEEEEecc-hhhHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFG-MALLGCNVITTDQ-IEVLPLL 101 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~-~a~~ga~v~~~D~-~~~l~~~ 101 (221)
..++++|+=+|+|. |..... ++.+|++|+++|. ++.++.+
T Consensus 163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~ 205 (369)
T 2eez_A 163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYL 205 (369)
T ss_dssp BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 36789999999964 443333 3356999999996 4444443
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=82.70 E-value=2.1 Score=33.45 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=46.4
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+++++||=.|++.|+ ++..+++.|++|++++. ++.++.+...+...+ .++.+...|..+...
T Consensus 11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 77 (266)
T 1xq1_A 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG-------------FQVTGSVCDASLRPE 77 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeeEEEECCCCCHHH
Confidence 3578899999986653 23334556999999986 444444444333322 346666666554332
Q ss_pred cccc--------CCCccEEEEcccc
Q 027594 138 IKAV--------APPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~~~--------~~~fD~Vi~~d~~ 154 (221)
.... ..+.|+|+.+--+
T Consensus 78 ~~~~~~~~~~~~~~~id~li~~Ag~ 102 (266)
T 1xq1_A 78 REKLMQTVSSMFGGKLDILINNLGA 102 (266)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECCC
T ss_pred HHHHHHHHHHHhCCCCcEEEECCCC
Confidence 2100 1578999877543
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=82.67 E-value=1.6 Score=33.92 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=46.5
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
++++++|=.|++.|+ ++..+++.|++|++++. + +.++.+.+.+...+ .++.+...|..+...
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 68 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG-------------SDAIAVRADVANAED 68 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHH
Confidence 357889999977653 33344567999998875 3 34444443333322 356666766655432
Q ss_pred ccc-------cCCCccEEEEccccc
Q 027594 138 IKA-------VAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~~-------~~~~fD~Vi~~d~~y 155 (221)
... ...+.|+++.+--+.
T Consensus 69 ~~~~~~~~~~~~g~id~lv~nAg~~ 93 (246)
T 2uvd_A 69 VTNMVKQTVDVFGQVDILVNNAGVT 93 (246)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 210 113789998875443
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=82.63 E-value=1.1 Score=41.33 Aligned_cols=40 Identities=25% Similarity=0.275 Sum_probs=32.4
Q ss_pred CeEEEeCCCccHHHHHHHHhC------CE-EEEecc-hhhHHHHHHHH
Q 027594 66 KRVIELGAGCGVAGFGMALLG------CN-VITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~g------a~-v~~~D~-~~~l~~~~~n~ 105 (221)
.+||||.||+|-+++.+.+.| .+ +.++|. +.+++..+.|.
T Consensus 213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh 260 (784)
T 4ft4_B 213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH 260 (784)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence 589999999999999887766 35 568898 55888888874
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=82.56 E-value=1.7 Score=34.48 Aligned_cols=81 Identities=16% Similarity=0.189 Sum_probs=50.7
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.++++++|=-|++.|+ ++..+++.|++|++++. + +..+.+...+...+ .++.+...|..+..
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~d~~ 91 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG-------------GEAFAVKADVSQES 91 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC-------------CcEEEEECCCCCHH
Confidence 4578999999987764 34455677999988875 3 34554444444332 35677777666543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.+--+.
T Consensus 92 ~v~~~~~~~~~~~g~id~lv~nAg~~ 117 (269)
T 4dmm_A 92 EVEALFAAVIERWGRLDVLVNNAGIT 117 (269)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 321 1124789999876544
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=82.44 E-value=2.2 Score=40.63 Aligned_cols=42 Identities=17% Similarity=0.256 Sum_probs=34.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-E-EEEecc-hhhHHHHHHHH
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-N-VITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~-v~~~D~-~~~l~~~~~n~ 105 (221)
+..+++||.||.|-+++.+.+.|. + +.++|+ +.+.+..+.|.
T Consensus 539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~ 583 (1002)
T 3swr_A 539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN 583 (1002)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC
T ss_pred CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence 456899999999999999999997 5 668998 45777766663
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.42 E-value=1.7 Score=33.88 Aligned_cols=77 Identities=22% Similarity=0.278 Sum_probs=45.4
Q ss_pred CCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-
Q 027594 65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (221)
Q Consensus 65 ~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~- 139 (221)
++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+.....
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~v~~ 68 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-------------GHAVAVKVDVSDRDQVFA 68 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEecCCCHHHHHH
Confidence 4688888876653 33344567999999986 444444444333222 35666776665543221
Q ss_pred ------ccCCCccEEEEcccc
Q 027594 140 ------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 140 ------~~~~~fD~Vi~~d~~ 154 (221)
....+.|+++.+--+
T Consensus 69 ~~~~~~~~~g~id~lv~nAg~ 89 (256)
T 1geg_A 69 AVEQARKTLGGFDVIVNNAGV 89 (256)
T ss_dssp HHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHhCCCCEEEECCCC
Confidence 112478999987543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=82.21 E-value=1.1 Score=36.20 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++++++|=-|++.|+ ++..+++.|++|+++|. .+.++.+...+...+ ..++.+...|..+..
T Consensus 37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~d~~ 104 (293)
T 3rih_A 37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG------------AGNVIGVRLDVSDPG 104 (293)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS------------SSCEEEEECCTTCHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC------------CCcEEEEEEeCCCHH
Confidence 34678999999987764 34455667999999996 444444444333222 146777777766543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.+--+.
T Consensus 105 ~v~~~~~~~~~~~g~iD~lvnnAg~~ 130 (293)
T 3rih_A 105 SCADAARTVVDAFGALDVVCANAGIF 130 (293)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 221 1124789999876544
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.17 E-value=1.5 Score=35.02 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=50.6
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..+.++++|=-|++.|+ ++..+++.|++|+++|. . +.++.+...+.... ..++.+...|..+.
T Consensus 21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~d~ 88 (281)
T 3v2h_A 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS------------SGTVLHHPADMTKP 88 (281)
T ss_dssp -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC------------SSCEEEECCCTTCH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc------------CCcEEEEeCCCCCH
Confidence 34578899999987764 34455677999999985 3 34444444443321 24567777666554
Q ss_pred CCcc-------ccCCCccEEEEccccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
.... ....+.|+++.+--+.
T Consensus 89 ~~v~~~~~~~~~~~g~iD~lv~nAg~~ 115 (281)
T 3v2h_A 89 SEIADMMAMVADRFGGADILVNNAGVQ 115 (281)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCC
Confidence 3221 1124789999876544
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=82.14 E-value=4 Score=33.10 Aligned_cols=94 Identities=17% Similarity=0.087 Sum_probs=55.8
Q ss_pred CCCCCCeEEEeC-CCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELG-AGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelG-cG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|++||=.| +|. |...+.+++ .|++|+++|. ++-++.+++ .+. + .+ .+..+..
T Consensus 137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga------------~--~~--~~~~~~~ 196 (325)
T 3jyn_A 137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKA----LGA------------W--ET--IDYSHED 196 (325)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTC------------S--EE--EETTTSC
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC------------C--EE--EeCCCcc
Confidence 345788999999 554 877777764 6999999996 445555542 221 1 11 1222211
Q ss_pred Cc-----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~-----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.. ......+|+|+-+-- . ..+....++++++|++++..
T Consensus 197 ~~~~~~~~~~~~g~Dvvid~~g--~-----~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 197 VAKRVLELTDGKKCPVVYDGVG--Q-----DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp HHHHHHHHTTTCCEEEEEESSC--G-----GGHHHHHTTEEEEEEEEECC
T ss_pred HHHHHHHHhCCCCceEEEECCC--h-----HHHHHHHHHhcCCCEEEEEe
Confidence 10 011347999986422 1 34556677889999877653
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=82.12 E-value=11 Score=30.02 Aligned_cols=100 Identities=22% Similarity=0.250 Sum_probs=52.4
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++|.=||+|. | .++..+++.|.+|++.|. ++.++.+++ .+..... . ...................-
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~----~g~~~~~-~------~~~~~~~~~~~~~~~~~~~~ 72 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRK----NGLIADF-N------GEEVVANLPIFSPEEIDHQN 72 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----HCEEEEE-T------TEEEEECCCEECGGGCCTTS
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh----CCEEEEe-C------CCeeEecceeecchhhcccC
Confidence 4788899986 4 455566677889999997 444444432 2221100 0 00000000000111110011
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
..+|+|+.+=+-+ ....++..+...++++..++.
T Consensus 73 ~~~d~vi~~v~~~---~~~~v~~~l~~~l~~~~~iv~ 106 (316)
T 2ew2_A 73 EQVDLIIALTKAQ---QLDAMFKAIQPMITEKTYVLC 106 (316)
T ss_dssp CCCSEEEECSCHH---HHHHHHHHHGGGCCTTCEEEE
T ss_pred CCCCEEEEEeccc---cHHHHHHHHHHhcCCCCEEEE
Confidence 2789998874432 457777777777887766544
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=82.08 E-value=1.5 Score=34.37 Aligned_cols=81 Identities=12% Similarity=0.198 Sum_probs=47.1
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhh-HHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEV-LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~-l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
++++++|=.|++.|+ ++..+++.|++|+++|. ++. ++.+...+.... ..++.+...|..+...
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~ 69 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH------------GVKVLYDGADLSKGEA 69 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH------------TSCEEEECCCTTSHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc------------CCcEEEEECCCCCHHH
Confidence 357899999987663 33344567999999986 333 554444443321 1245666666655432
Q ss_pred ccc-------cCCCccEEEEccccc
Q 027594 138 IKA-------VAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~~-------~~~~fD~Vi~~d~~y 155 (221)
... ...+.|+++.+--+.
T Consensus 70 v~~~~~~~~~~~g~iD~lv~~Ag~~ 94 (260)
T 1x1t_A 70 VRGLVDNAVRQMGRIDILVNNAGIQ 94 (260)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCC
Confidence 210 113789999875443
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=81.92 E-value=2.3 Score=28.43 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=38.6
Q ss_pred CCCeEEEeCCCccHHHHHH----HHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 64 KGKRVIELGAGCGVAGFGM----ALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~----a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.+++|+=+|+| ..|..+ ++.| .+|+++|. ++.++.+. .. .+.....|..+...
T Consensus 4 ~~~~v~I~G~G--~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~~---------------~~~~~~~d~~~~~~ 62 (118)
T 3ic5_A 4 MRWNICVVGAG--KIGQMIAALLKTSSNYSVTVADHDLAALAVLN----RM---------------GVATKQVDAKDEAG 62 (118)
T ss_dssp TCEEEEEECCS--HHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----TT---------------TCEEEECCTTCHHH
T ss_pred CcCeEEEECCC--HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----hC---------------CCcEEEecCCCHHH
Confidence 45789999995 444433 4458 67999996 44333332 11 23444544443322
Q ss_pred ccccCCCccEEEEccc
Q 027594 138 IKAVAPPFDYIIGTDV 153 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~ 153 (221)
....-..+|+|+.+-+
T Consensus 63 ~~~~~~~~d~vi~~~~ 78 (118)
T 3ic5_A 63 LAKALGGFDAVISAAP 78 (118)
T ss_dssp HHHHTTTCSEEEECSC
T ss_pred HHHHHcCCCEEEECCC
Confidence 2222347899988754
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=81.88 E-value=1.7 Score=34.52 Aligned_cols=83 Identities=18% Similarity=0.205 Sum_probs=51.1
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+. ...++.+...|..+...
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----------~~~~~~~~~~Dv~~~~~ 77 (281)
T 3svt_A 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA----------NGGAIRYEPTDITNEDE 77 (281)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCC----------SSCEEEEEECCTTSHHH
T ss_pred CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----------CCceEEEEeCCCCCHHH
Confidence 4578999999987764 34455667999999996 4455555544443221 01257777766655432
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--+
T Consensus 78 v~~~~~~~~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 78 TARAVDAVTAWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 21 112468999987654
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=81.51 E-value=2.2 Score=32.87 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=46.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+...+.... ..++.+...|..+....
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~~ 72 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY------------GVKAHGVEMNLLSEESI 72 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc------------CCceEEEEccCCCHHHH
Confidence 467899999986553 22334456999999986 444444444433211 13466666665544322
Q ss_pred c-------ccCCCccEEEEccccc
Q 027594 139 K-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~y 155 (221)
. ....+.|+|+.+--+.
T Consensus 73 ~~~~~~~~~~~~~~d~vi~~Ag~~ 96 (248)
T 2pnf_A 73 NKAFEEIYNLVDGIDILVNNAGIT 96 (248)
T ss_dssp HHHHHHHHHHSSCCSEEEECCCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCC
Confidence 1 1124789998875443
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.39 E-value=4.6 Score=32.26 Aligned_cols=81 Identities=20% Similarity=0.288 Sum_probs=50.8
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCC---EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
++++++|=-|++.|+ ++..+++.|+ +|++++. .+.++.+.+.+..... ..++.+..+|..+.
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dv~d~ 99 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP-----------NAKVHVAQLDITQA 99 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCT-----------TCEEEEEECCTTCG
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCC-----------CCeEEEEECCCCCH
Confidence 468899999987764 2334455677 8999986 4456555555544321 24577777777665
Q ss_pred CCcc-------ccCCCccEEEEcccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~~ 154 (221)
+... ....+.|+++.+--+
T Consensus 100 ~~v~~~~~~~~~~~g~iD~lVnnAG~ 125 (287)
T 3rku_A 100 EKIKPFIENLPQEFKDIDILVNNAGK 125 (287)
T ss_dssp GGHHHHHHTSCGGGCSCCEEEECCCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 4321 112478999987554
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=81.30 E-value=19 Score=30.72 Aligned_cols=40 Identities=23% Similarity=0.430 Sum_probs=28.1
Q ss_pred CCCeEEEeCCCc-cHH-HHHHHHhCCEEEEecc-hhhHHHHHH
Q 027594 64 KGKRVIELGAGC-GVA-GFGMALLGCNVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~-~l~~a~~ga~v~~~D~-~~~l~~~~~ 103 (221)
-|.+.-=+|.|. |++ +..+++.|.+|++.|. ++.++.+++
T Consensus 10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~ 52 (431)
T 3ojo_A 10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQN 52 (431)
T ss_dssp --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT
T ss_pred cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHC
Confidence 456777888886 754 5667788999999997 555655543
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=81.29 E-value=14 Score=31.88 Aligned_cols=103 Identities=13% Similarity=0.155 Sum_probs=56.4
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hh-hHHHHHHHHHHhhhccccCCCC--CCCCCceEEEEEEecCCCCcc
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPG--SDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~--~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++|-=||+|+ | -++..+++.|.+|++.|. ++ +...++++++.....- ..... .....++++.. . ..
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G-~l~~~~~~~~~~~i~~t~-----d--l~ 126 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFK-RLNDKRIEKINANLKITS-----D--FH 126 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTT-SCCHHHHHHHHTTEEEES-----C--GG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHhcceEEeC-----C--HH
Confidence 5788999997 4 467777888999999997 44 4444444544221100 00000 00012333321 1 11
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
.-...|+||.+=+ -.......+++.+...++|+..+.
T Consensus 127 -al~~aDlVIeAVp-e~~~vk~~v~~~l~~~~~~~aIla 163 (460)
T 3k6j_A 127 -KLSNCDLIVESVI-EDMKLKKELFANLENICKSTCIFG 163 (460)
T ss_dssp -GCTTCSEEEECCC-SCHHHHHHHHHHHHTTSCTTCEEE
T ss_pred -HHccCCEEEEcCC-CCHHHHHHHHHHHHhhCCCCCEEE
Confidence 1346799987521 222335567788888888877653
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=81.12 E-value=2 Score=34.31 Aligned_cols=82 Identities=20% Similarity=0.312 Sum_probs=49.2
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+.+.+.... ..++.+...|..+..
T Consensus 22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~~ 89 (302)
T 1w6u_A 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT------------GNKVHAIQCDVRDPD 89 (302)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCceEEEEeCCCCHH
Confidence 45678999999976553 33344567999999986 444444444443321 135677777765543
Q ss_pred Ccc-------ccCCCccEEEEcccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~ 154 (221)
... ....++|+|+.+--+
T Consensus 90 ~~~~~~~~~~~~~g~id~li~~Ag~ 114 (302)
T 1w6u_A 90 MVQNTVSELIKVAGHPNIVINNAAG 114 (302)
T ss_dssp HHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 221 112467999887553
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=81.03 E-value=1.5 Score=34.18 Aligned_cols=78 Identities=22% Similarity=0.320 Sum_probs=47.2
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++++++|=.|++.|+ ++..+++.|++|+++|. ++.++.+...+ + .++.+...|..+...
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~~~~ 66 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---G-------------KKARAIAADISDPGS 66 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C-------------TTEEECCCCTTCHHH
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------------CceEEEEcCCCCHHH
Confidence 4578999999987764 34455677999999996 44433332222 1 245666655554432
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--+.
T Consensus 67 v~~~~~~~~~~~g~id~lv~nAg~~ 91 (247)
T 3rwb_A 67 VKALFAEIQALTGGIDILVNNASIV 91 (247)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCC
Confidence 21 1124789998876544
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.01 E-value=2.2 Score=33.50 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=51.0
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+++++|=.|++.|+ ++..+++.|++|+++|. ++..+.+...+..... ..++.+...|..+...
T Consensus 4 m~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~D~~~~~~ 72 (267)
T 2gdz_A 4 MVNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE-----------PQKTLFIQCDVADQQQ 72 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC-----------GGGEEEEECCTTSHHH
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcC-----------CCceEEEecCCCCHHH
Confidence 3467899999987653 33344567999999986 3343333333222100 1246667766655432
Q ss_pred cc-------ccCCCccEEEEcccccCCcCHHH
Q 027594 138 IK-------AVAPPFDYIIGTDVVYAEHLLEP 162 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y~~~~~~~ 162 (221)
.. ....+.|+++.+--+...+.+..
T Consensus 73 v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~ 104 (267)
T 2gdz_A 73 LRDTFRKVVDHFGRLDILVNNAGVNNEKNWEK 104 (267)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCSSSHHH
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCChhhHHH
Confidence 21 01136899998866554454444
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=80.94 E-value=5.2 Score=32.73 Aligned_cols=92 Identities=18% Similarity=0.271 Sum_probs=55.2
Q ss_pred CCCCCCeEEEeCC-Cc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGc-G~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|++||=.|+ |. |...+.+++ .|++|++++. ++-++.+++ .+. + .+. +.. ..
T Consensus 156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga------------~--~v~--~~~-~~ 214 (342)
T 4eye_A 156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS----VGA------------D--IVL--PLE-EG 214 (342)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTC------------S--EEE--ESS-TT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCC------------c--EEe--cCc-hh
Confidence 3457899999998 43 777777765 6999999996 555565553 221 1 111 111 11
Q ss_pred C---cc--ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 H---IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~---~~--~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. .. .....+|+|+-+-- . ..+....++++++|++++.
T Consensus 215 ~~~~v~~~~~~~g~Dvvid~~g--~-----~~~~~~~~~l~~~G~iv~~ 256 (342)
T 4eye_A 215 WAKAVREATGGAGVDMVVDPIG--G-----PAFDDAVRTLASEGRLLVV 256 (342)
T ss_dssp HHHHHHHHTTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCceEEEECCc--h-----hHHHHHHHhhcCCCEEEEE
Confidence 0 00 11347999985422 1 2355667788999988764
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=80.92 E-value=4.6 Score=32.87 Aligned_cols=93 Identities=17% Similarity=0.095 Sum_probs=54.6
Q ss_pred CCCCCCeEEEeC-CCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELG-AGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelG-cG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|++||=.| +|. |...+.+++ .|++|+++|. ++-++.+++ .+. + .+ .+..+..
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga------------~--~~--~~~~~~~ 204 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE----YGA------------E--YL--INASKED 204 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC------------S--EE--EETTTSC
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC------------c--EE--EeCCCch
Confidence 345788999999 443 777776665 6999999997 445554443 221 1 11 1222211
Q ss_pred Cc-----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 HI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~~-----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.. ......+|+|+-+-- . ..+....++++++|++++.
T Consensus 205 ~~~~~~~~~~~~g~D~vid~~g--~-----~~~~~~~~~l~~~G~iv~~ 246 (334)
T 3qwb_A 205 ILRQVLKFTNGKGVDASFDSVG--K-----DTFEISLAALKRKGVFVSF 246 (334)
T ss_dssp HHHHHHHHTTTSCEEEEEECCG--G-----GGHHHHHHHEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCceEEEECCC--h-----HHHHHHHHHhccCCEEEEE
Confidence 10 011346899885422 1 3456666788999987764
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=80.91 E-value=3.6 Score=37.32 Aligned_cols=60 Identities=17% Similarity=0.201 Sum_probs=35.1
Q ss_pred CCCccEEEEccc--ccCCcC-HHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEec
Q 027594 142 APPFDYIIGTDV--VYAEHL-LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP 206 (221)
Q Consensus 142 ~~~fD~Vi~~d~--~y~~~~-~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v~ 206 (221)
...+|.++.... -+++++ -..++..+.++++||+.+.. +. -...+.+. ..+.+|.+..+.
T Consensus 169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t-~~-~~~~vr~~---l~~aGf~~~~~~ 231 (689)
T 3pvc_A 169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST-FT-AAGFVRRG---LQQAGFNVTKVK 231 (689)
T ss_dssp TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE-SC-CCHHHHHH---HHHTTCEEEEEE
T ss_pred CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe-cc-CcHHHHHH---HHhCCeEEEecc
Confidence 367999988431 122332 35788999999999998543 21 11122222 224689887765
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=80.85 E-value=4.6 Score=32.66 Aligned_cols=97 Identities=18% Similarity=0.098 Sum_probs=54.4
Q ss_pred CeEEEeCCCc--cHHHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~--G~~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
++|+=+|+|. +.++..+++.|.+|++.+.+. .+ .+..+++..... .+...+....... .. ....
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~----~i~~~g~~~~~~------~g~~~~~~~~~~~--~~-~~~~ 68 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD-YE----AIAGNGLKVFSI------NGDFTLPHVKGYR--AP-EEIG 68 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT-HH----HHHHTCEEEEET------TCCEEESCCCEES--CH-HHHC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc-HH----HHHhCCCEEEcC------CCeEEEeeceeec--CH-HHcC
Confidence 5788899997 466777788899999999754 22 233344321100 0111110000000 01 1124
Q ss_pred CccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 144 PFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 144 ~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.+|+|+.+=.-+. ...+++.+...+.++..++.
T Consensus 69 ~~D~vilavk~~~---~~~~l~~l~~~l~~~~~iv~ 101 (312)
T 3hn2_A 69 PMDLVLVGLKTFA---NSRYEELIRPLVEEGTQILT 101 (312)
T ss_dssp CCSEEEECCCGGG---GGGHHHHHGGGCCTTCEEEE
T ss_pred CCCEEEEecCCCC---cHHHHHHHHhhcCCCCEEEE
Confidence 7899988755454 44677888888888876544
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=80.84 E-value=22 Score=29.23 Aligned_cols=118 Identities=11% Similarity=0.025 Sum_probs=61.7
Q ss_pred CCeEEEeCCCccHHHHHHHHh---CCEEEEecchhhHHHHHHHHHHhhhc---cc--------cCCCCCCCCCceEEEEE
Q 027594 65 GKRVIELGAGCGVAGFGMALL---GCNVITTDQIEVLPLLKRNVEWNTSR---IS--------QMNPGSDLLGSIQAVEL 130 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~~~~l~~~~~n~~~n~~~---~~--------~~~~~~~~~~~v~~~~~ 130 (221)
.+.|+-||||.=.-..-+... +.+++=+|.|++++.=++.+..+... .. ......-..++.+.+..
T Consensus 91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~~ 170 (334)
T 3iei_A 91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGA 170 (334)
T ss_dssp CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEEC
T ss_pred CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEcc
Confidence 468999999986666666543 45677788888766444444332110 00 00000001345666666
Q ss_pred EecCCCCcc-------ccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 131 DWGNEDHIK-------AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 131 dw~~~~~~~-------~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
|..+...+. ......-++++-.+++. ++....+++.+.....+ |.+++..+.
T Consensus 171 DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~-~~~i~yE~i 231 (334)
T 3iei_A 171 DLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFER-AMFINYEQV 231 (334)
T ss_dssp CTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS-EEEEEEEEC
T ss_pred ccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCC-ceEEEEecc
Confidence 654421110 11223345555444433 56788899998887654 544443443
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=80.78 E-value=2.3 Score=33.75 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=50.5
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++||++|=-|++.|+ ++..+++.|++|+++|. .+..+.++. +...+ .++.+...|..+...
T Consensus 4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~-~~~~~-------------~~~~~~~~Dv~~~~~ 69 (258)
T 4gkb_A 4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDA-LAQRQ-------------PRATYLPVELQDDAQ 69 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHH-HHHHC-------------TTCEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHH-HHhcC-------------CCEEEEEeecCCHHH
Confidence 4689999999999885 45667788999999885 333333332 22222 356667766655433
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ..-.+.|+++.|--+.
T Consensus 70 v~~~v~~~~~~~G~iDiLVNnAGi~ 94 (258)
T 4gkb_A 70 CRDAVAQTIATFGRLDGLVNNAGVN 94 (258)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCC
Confidence 21 1125789998876543
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=80.77 E-value=2.2 Score=35.14 Aligned_cols=91 Identities=22% Similarity=0.198 Sum_probs=54.6
Q ss_pred CCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC--
Q 027594 64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-- 137 (221)
Q Consensus 64 ~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-- 137 (221)
+|.+||-+|+|. |...+.+|+ +|+ +|+++|. ++-++.+++ .+. + .+ .+..+.+.
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga------------~--~~--~~~~~~~~~~ 226 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGA------------D--YV--INPFEEDVVK 226 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTC------------S--EE--ECTTTSCHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC------------C--EE--ECCCCcCHHH
Confidence 889999999975 777777665 588 8999996 445555542 221 1 11 12111110
Q ss_pred -cc--ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 -IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 -~~--~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.. .....+|+|+-+-. ....+....++++++|++++.
T Consensus 227 ~v~~~~~g~g~D~vid~~g------~~~~~~~~~~~l~~~G~iv~~ 266 (348)
T 2d8a_A 227 EVMDITDGNGVDVFLEFSG------APKALEQGLQAVTPAGRVSLL 266 (348)
T ss_dssp HHHHHTTTSCEEEEEECSC------CHHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHHcCCCCCCEEEECCC------CHHHHHHHHHHHhcCCEEEEE
Confidence 00 11246899985421 235567777888999987654
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=80.73 E-value=15 Score=30.49 Aligned_cols=31 Identities=32% Similarity=0.482 Sum_probs=23.0
Q ss_pred CCCeEEEeCCCc-cH-HHHHHHHhCC-EEEEecc
Q 027594 64 KGKRVIELGAGC-GV-AGFGMALLGC-NVITTDQ 94 (221)
Q Consensus 64 ~~~~vLelGcG~-G~-~~l~~a~~ga-~v~~~D~ 94 (221)
++.+||=+|||. |. ++..++..|. +++.+|.
T Consensus 117 ~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~ 150 (353)
T 3h5n_A 117 KNAKVVILGCGGIGNHVSVILATSGIGEIILIDN 150 (353)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEEC
T ss_pred hCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECC
Confidence 567999999985 53 4556677786 6888874
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=80.63 E-value=1.5 Score=33.98 Aligned_cols=79 Identities=19% Similarity=0.170 Sum_probs=46.4
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch--hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~--~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
+++++||=.|++.|+ ++..+++.|++|+++|.. +.++.+...+...+ .++.+...|..+.+.
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~ 71 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADG-------------GDAAFFAADLATSEA 71 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTT-------------CEEEEEECCTTSHHH
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcC-------------CceEEEECCCCCHHH
Confidence 467899988876543 233344569999998853 34444444443322 356777766655433
Q ss_pred ccc-------cCCCccEEEEcccc
Q 027594 138 IKA-------VAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~~-------~~~~fD~Vi~~d~~ 154 (221)
... ...++|+||.+--+
T Consensus 72 ~~~~~~~~~~~~g~id~vi~~Ag~ 95 (258)
T 3afn_B 72 CQQLVDEFVAKFGGIDVLINNAGG 95 (258)
T ss_dssp HHHHHHHHHHHHSSCSEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 211 01378999987554
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.55 E-value=3.4 Score=33.76 Aligned_cols=62 Identities=16% Similarity=0.056 Sum_probs=38.7
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEec-c-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTD-Q-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D-~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
++++++|=.|++.|+ ++..+++.|++|++++ . ++.++.+...+.... ..++.+..+|..+..
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~d~~ 110 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR------------PNSAITVQADLSNVA 110 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS------------TTCEEEEECCCSSSC
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc------------CCeEEEEEeeCCCch
Confidence 567899999987664 3444556799999998 6 344444444443111 135677777776655
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=80.53 E-value=2.2 Score=35.62 Aligned_cols=94 Identities=24% Similarity=0.199 Sum_probs=55.7
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEec---C
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG---N 134 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~---~ 134 (221)
..+|.+||-+|+|. |+.++.+|+ +| ++|+++|. ++-++.+++ .+. + .+ ++.. +
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa------------~--~v--i~~~~~~~ 252 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGA------------D--LT--LNRRETSV 252 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTC------------S--EE--EETTTSCH
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCC------------c--EE--EeccccCc
Confidence 45788999999886 888777775 58 59999996 445555542 221 1 11 1211 0
Q ss_pred CC---Ccc--ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 135 ED---HIK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 135 ~~---~~~--~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.+ ... .....+|+|+-+ .-. ...+....++++++|++++..
T Consensus 253 ~~~~~~v~~~~~g~g~Dvvid~--~g~----~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 253 EERRKAIMDITHGRGADFILEA--TGD----SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp HHHHHHHHHHTTTSCEEEEEEC--SSC----TTHHHHHHHHEEEEEEEEECC
T ss_pred chHHHHHHHHhCCCCCcEEEEC--CCC----HHHHHHHHHHHhcCCEEEEEe
Confidence 00 000 112369999854 221 234566678889999877643
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=80.52 E-value=2.5 Score=35.19 Aligned_cols=70 Identities=27% Similarity=0.312 Sum_probs=37.8
Q ss_pred CCCeEEEeCCCccHHHHHHH---HhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGVAGFGMA---LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a---~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
+.++||=|||| ..|-.++ ....+|+..|.. +.++.++ +.+....+|..+.+.+.
T Consensus 15 ~~mkilvlGaG--~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~--------------------~~~~~~~~d~~d~~~l~ 72 (365)
T 3abi_A 15 RHMKVLILGAG--NIGRAIAWDLKDEFDVYIGDVNNENLEKVK--------------------EFATPLKVDASNFDKLV 72 (365)
T ss_dssp -CCEEEEECCS--HHHHHHHHHHTTTSEEEEEESCHHHHHHHT--------------------TTSEEEECCTTCHHHHH
T ss_pred CccEEEEECCC--HHHHHHHHHHhcCCCeEEEEcCHHHHHHHh--------------------ccCCcEEEecCCHHHHH
Confidence 45689999996 3443333 335679888863 3333322 12334444444333332
Q ss_pred ccCCCccEEEEccccc
Q 027594 140 AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y 155 (221)
..-...|+||.+-+.|
T Consensus 73 ~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 73 EVMKEFELVIGALPGF 88 (365)
T ss_dssp HHHTTCSEEEECCCGG
T ss_pred HHHhCCCEEEEecCCc
Confidence 2235789999874433
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=80.52 E-value=2.4 Score=32.85 Aligned_cols=81 Identities=22% Similarity=0.193 Sum_probs=46.8
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEec-c-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTD-Q-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D-~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+++++|=.|++.|+ ++..+++.|++|+.++ . .+..+.+.+.+...+ .++.+...|..+..
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~ 70 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNG-------------GSAFSIGANLESLH 70 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTT-------------CEEEEEECCTTSHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcC-------------CceEEEecCcCCHH
Confidence 4578999999988764 3444556799988764 3 334444444444332 34566665554432
Q ss_pred Cccc-------------cCCCccEEEEccccc
Q 027594 137 HIKA-------------VAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~~-------------~~~~fD~Vi~~d~~y 155 (221)
.... ...+.|+++.+--+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~ 102 (255)
T 3icc_A 71 GVEALYSSLDNELQNRTGSTKFDILINNAGIG 102 (255)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCEEEEEECCCCC
T ss_pred HHHHHHHHHHHHhcccccCCcccEEEECCCCC
Confidence 2110 013589998876543
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=80.38 E-value=2.9 Score=34.53 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=30.6
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-h-CCEEEEecc-hhhHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-L-GCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~-ga~v~~~D~-~~~l~~~~ 102 (221)
..+|.+||=+|+|. |+.++.+|+ + |++|+++|. ++-++.++
T Consensus 184 ~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~ 228 (359)
T 1h2b_A 184 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE 228 (359)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 34788999999975 777777765 6 899999996 44555554
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.28 E-value=5 Score=32.86 Aligned_cols=93 Identities=22% Similarity=0.199 Sum_probs=55.2
Q ss_pred CCCCCeEEEeCC--CccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGA--GCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGc--G~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+|++||-+|+ |.|...+.+++ .|++|+++|. ++.++.+++ .+. + . ..|..+...
T Consensus 167 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~------------~--~--~~d~~~~~~ 226 (347)
T 2hcy_A 167 LMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGG------------E--V--FIDFTKEKD 226 (347)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTC------------C--E--EEETTTCSC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCC------------c--e--EEecCccHh
Confidence 457889999998 34766666554 6999999996 445554442 221 1 1 123332221
Q ss_pred cc-----ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 IK-----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 ~~-----~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.. .....+|+|+.+-. ....+....++++++|++++.
T Consensus 227 ~~~~~~~~~~~~~D~vi~~~g------~~~~~~~~~~~l~~~G~iv~~ 268 (347)
T 2hcy_A 227 IVGAVLKATDGGAHGVINVSV------SEAAIEASTRYVRANGTTVLV 268 (347)
T ss_dssp HHHHHHHHHTSCEEEEEECSS------CHHHHHHHTTSEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCCEEEECCC------cHHHHHHHHHHHhcCCEEEEE
Confidence 10 01126899886522 235667777888999987654
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=80.28 E-value=5.2 Score=36.85 Aligned_cols=103 Identities=17% Similarity=0.234 Sum_probs=61.4
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccc---cCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS---QMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~---~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
++|-=||+|+ | -++..+|..|..|+..|. ++.++.++..+..+..... ...........+++. ...
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~--- 388 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFS-----SST--- 388 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEE-----SCG---
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhccc-----CcH---
Confidence 5899999998 3 466677888999999997 5677777766654321100 000000011222221 111
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
..-...|+||=+ ++-+.+.-..+++.+..+++|+.++
T Consensus 389 ~~l~~aDlVIEA-V~E~l~iK~~vf~~le~~~~~~aIl 425 (742)
T 3zwc_A 389 KELSTVDLVVEA-VFEDMNLKKKVFAELSALCKPGAFL 425 (742)
T ss_dssp GGGGSCSEEEEC-CCSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred HHHhhCCEEEEe-ccccHHHHHHHHHHHhhcCCCCceE
Confidence 112457999854 4445666777888898888887654
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.08 E-value=1.4 Score=34.94 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=46.9
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++++++|=.|++.|+ ++..+++.|++|++++. ++.++.+.+.+..... ...++.+...|..+....
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~~ 73 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV----------SEQNVNSVVADVTTDAGQ 73 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccc----------CCCceeEEecccCCHHHH
Confidence 467899999987653 33345567999999986 4444444443321110 013567777666554322
Q ss_pred cc-------cCCCccEEEEcccc
Q 027594 139 KA-------VAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~~-------~~~~fD~Vi~~d~~ 154 (221)
.. ...+.|+++.+--+
T Consensus 74 ~~~~~~~~~~~g~id~lv~~Ag~ 96 (278)
T 1spx_A 74 DEILSTTLGKFGKLDILVNNAGA 96 (278)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 11 11378999887543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 221 | |||
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.84 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.84 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.8 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.79 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.75 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.74 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.73 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.69 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.68 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.67 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.66 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.66 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.65 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.65 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.64 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.64 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.64 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.64 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.63 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.62 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.62 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.61 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.61 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.6 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.6 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.59 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.58 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.58 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.57 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.57 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.56 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.56 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.56 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.56 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.56 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.55 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.52 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.51 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.5 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.5 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.5 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.49 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.48 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.48 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.48 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.47 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.46 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.45 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.45 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.44 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.44 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.43 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.42 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.42 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.41 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.4 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.4 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.38 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.38 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.37 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.32 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.29 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.23 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 99.21 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.19 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.14 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.12 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.06 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.02 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.93 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.89 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.84 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.84 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.81 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.65 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.59 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.58 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.55 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.55 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.48 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.41 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.36 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.3 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.24 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.24 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.14 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.12 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.11 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.07 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.02 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.94 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 97.91 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.87 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.77 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.67 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.67 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.64 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 97.49 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.38 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.12 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.86 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.85 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 96.74 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.52 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.48 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.36 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.32 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.18 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.16 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.05 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.82 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.79 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.69 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.6 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.55 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 95.53 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.49 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.29 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 95.18 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.12 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.09 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 94.96 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.9 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 94.8 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 94.71 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.26 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.23 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 94.19 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.96 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.93 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.9 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 93.56 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.55 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.54 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.44 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 93.29 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 93.24 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 93.23 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.19 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 93.03 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 93.0 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 92.99 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 92.76 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.75 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 92.72 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 92.69 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.52 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 92.42 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 92.32 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 92.15 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 92.11 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 92.01 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 91.35 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 91.3 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 91.06 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 90.96 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 90.75 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 90.57 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 90.44 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 90.34 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 89.91 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 89.84 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 89.8 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 89.53 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 89.23 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 88.98 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 88.96 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 88.93 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 88.9 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 88.88 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 88.15 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 87.62 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 87.54 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 87.16 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 87.03 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 86.97 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 86.97 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 86.93 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 86.78 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.65 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 86.62 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 86.49 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 86.41 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 85.89 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 84.96 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 84.48 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 84.26 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 84.06 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 83.72 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 81.98 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 81.5 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 81.3 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 80.17 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 80.03 |
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.84 E-value=1.6e-20 Score=145.21 Aligned_cols=146 Identities=20% Similarity=0.244 Sum_probs=114.4
Q ss_pred eEEEEEcCeEEEEeeCCCCCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEe
Q 027594 13 VINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITT 92 (221)
Q Consensus 13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~ 92 (221)
.+...+.|+++++.+.++.+..+ .++.++.+|++++. ..++++|||+|||+|.+++.+++.+.+|+++
T Consensus 13 ~~~~~~~g~~~~~~t~~gvF~~~-~~d~~t~lLi~~l~-----------~~~~~~VLDiGcG~G~~~~~la~~~~~v~~i 80 (194)
T d1dusa_ 13 IVEDILRGKKLKFKTDSGVFSYG-KVDKGTKILVENVV-----------VDKDDDILDLGCGYGVIGIALADEVKSTTMA 80 (194)
T ss_dssp EEEEEETTEEEEEEEETTSTTTT-SCCHHHHHHHHHCC-----------CCTTCEEEEETCTTSHHHHHHGGGSSEEEEE
T ss_pred EEEEEECCeeEEEEcCCCccCCC-CcCHHHHHHHHhCC-----------cCCCCeEEEEeecCChhHHHHHhhcccccee
Confidence 46667889999999988766544 34556667666653 3478899999999999999999999999999
Q ss_pred cc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcC-HHHHHHHHHHh
Q 027594 93 DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHL-LEPLLQTIFAL 170 (221)
Q Consensus 93 D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~-~~~l~~~~~~l 170 (221)
|+ +.+++.+++|++.|++. ..++++...|+.+. ..+++||+|++++++|.... ...+++.+.++
T Consensus 81 D~s~~~i~~a~~n~~~~~l~----------~~~i~~~~~d~~~~----~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~ 146 (194)
T d1dusa_ 81 DINRRAIKLAKENIKLNNLD----------NYDIRVVHSDLYEN----VKDRKYNKIITNPPIRAGKEVLHRIIEEGKEL 146 (194)
T ss_dssp ESCHHHHHHHHHHHHHTTCT----------TSCEEEEECSTTTT----CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHH
T ss_pred eeccccchhHHHHHHHhCCc----------cceEEEEEcchhhh----hccCCceEEEEcccEEecchhhhhHHHHHHHh
Confidence 98 56999999999998762 23577766555321 23578999999999887544 57899999999
Q ss_pred cCCCeEEEEEEEec
Q 027594 171 SGPKTTILLGYEIR 184 (221)
Q Consensus 171 l~~~g~~~i~~~~r 184 (221)
|+|||.+++.....
T Consensus 147 LkpgG~l~i~~~~~ 160 (194)
T d1dusa_ 147 LKDNGEIWVVIQTK 160 (194)
T ss_dssp EEEEEEEEEEEEST
T ss_pred cCcCcEEEEEEeCc
Confidence 99999998866543
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=8.8e-21 Score=152.30 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=114.8
Q ss_pred CeEEEEeeCCC-CCcccceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhh
Q 027594 20 GHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEV 97 (221)
Q Consensus 20 ~~~~~i~~~~~-~~~~g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~ 97 (221)
..++.|..+|+ ++++|.+ +++.++.++|.+. ..+|++|||+|||+|.+++.++++|++|+++|+ +++
T Consensus 86 ~~~~~i~i~pg~aFGTG~H--~TT~l~l~~l~~~---------~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~a 154 (254)
T d2nxca1 86 GAEIPLVIEPGMAFGTGHH--ETTRLALKALARH---------LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMV 154 (254)
T ss_dssp SSSEEEECCCC-----CCS--HHHHHHHHHHHHH---------CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGG
T ss_pred CcceEEEEccccccCcccc--chhhHHHHHHHhh---------cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHH
Confidence 34577777885 4666665 8899999999865 457899999999999999999999999999998 669
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
++.+++|++.|++ ++.+...++.+ ....++||+|+++ ...+.+..++..+.++|+|||++
T Consensus 155 v~~A~~na~~n~~-------------~~~~~~~d~~~----~~~~~~fD~V~an---i~~~~l~~l~~~~~~~LkpGG~l 214 (254)
T d2nxca1 155 LPQAEANAKRNGV-------------RPRFLEGSLEA----ALPFGPFDLLVAN---LYAELHAALAPRYREALVPGGRA 214 (254)
T ss_dssp HHHHHHHHHHTTC-------------CCEEEESCHHH----HGGGCCEEEEEEE---CCHHHHHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHHHHHcCC-------------ceeEEeccccc----cccccccchhhhc---cccccHHHHHHHHHHhcCCCcEE
Confidence 9999999999986 34555544332 1235789999987 33345778899999999999999
Q ss_pred EEEEEecChhHHHHHHHHHh-cCCeEEEec
Q 027594 178 LLGYEIRSTSVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 178 ~i~~~~r~~~~~~~~~~~~~-~~f~v~~v~ 206 (221)
+++....... +.+.+.++ .+|++....
T Consensus 215 ilSgil~~~~--~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 215 LLTGILKDRA--PLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEEEEEGGGH--HHHHHHHHHTTCEEEEEE
T ss_pred EEEecchhhH--HHHHHHHHHCCCEEEEEE
Confidence 9876554432 45555554 578875443
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.80 E-value=9.9e-19 Score=137.72 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=94.0
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...++.+|||||||+|..+..+++.|++|+++|. +++++.|++++..++. +++.+...++.+ ++
T Consensus 12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~------------~~i~~~~~d~~~---l~ 76 (231)
T d1vl5a_ 12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH------------QQVEYVQGDAEQ---MP 76 (231)
T ss_dssp TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCC-C---CC
T ss_pred CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccc------------cccccccccccc---cc
Confidence 3457789999999999999999999999999998 5699999999988774 678888866644 34
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
...++||+|++..++++.++...+++.+.++|+|||++++.....
T Consensus 77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 121 (231)
T d1vl5a_ 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA 121 (231)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 456899999999999999999999999999999999999876543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.79 E-value=8.2e-19 Score=138.93 Aligned_cols=109 Identities=13% Similarity=0.103 Sum_probs=94.0
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...+|.+|||||||+|..+..+++.+++|+++|. +.+++.|++++..++. +++.+...|. ...+
T Consensus 13 ~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~------------~~~~~~~~d~---~~~~ 77 (234)
T d1xxla_ 13 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV------------ENVRFQQGTA---ESLP 77 (234)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC------------CSEEEEECBT---TBCC
T ss_pred CCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc------------cccccccccc---cccc
Confidence 4558899999999999999999999999999998 5599999999998874 5688877554 3344
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
..+++||+|+++.++++..+...+++.+.++|+|||+++++....
T Consensus 78 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~ 122 (234)
T d1xxla_ 78 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA 122 (234)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred ccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence 557899999999999999999999999999999999998876543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.75 E-value=1.3e-17 Score=135.64 Aligned_cols=110 Identities=13% Similarity=0.073 Sum_probs=94.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
...++.+|||||||+|..+..+++. |++|+++|. +.+++.++++....++ .+++++...|+.+ +
T Consensus 64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl-----------~~~v~~~~~d~~~---l 129 (282)
T d2o57a1 64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----------ADNITVKYGSFLE---I 129 (282)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----------TTTEEEEECCTTS---C
T ss_pred CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc-----------ccccccccccccc---c
Confidence 4557899999999999999999865 889999998 5699999999988876 4689999866644 4
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
+.+.++||+|++..++++..+...+++.+.++|+|||++++.....
T Consensus 130 ~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 175 (282)
T d2o57a1 130 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK 175 (282)
T ss_dssp SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred cccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 4456899999999999999999999999999999999999876543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=7e-18 Score=134.43 Aligned_cols=123 Identities=15% Similarity=0.043 Sum_probs=102.2
Q ss_pred cchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCC
Q 027594 39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 39 W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
+|.+.-..+.|.... ...+|++|||||||+|..+..+++. |++|+++|. +.+++.++++++.+++
T Consensus 15 ~p~~~~~~~~l~~~~-------~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl------ 81 (245)
T d1nkva_ 15 NPFTEEKYATLGRVL-------RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV------ 81 (245)
T ss_dssp SSCCHHHHHHHHHHT-------CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC------
T ss_pred CCCCHHHHHHHHHHc-------CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc------
Confidence 455556666666663 5668999999999999999988864 789999998 5699999999999886
Q ss_pred CCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.+++++...|+.+. ..+++||+|++..++++..+...+++.+.++|+|||++++....
T Consensus 82 -----~~~v~~~~~d~~~~----~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 82 -----SERVHFIHNDAAGY----VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp -----TTTEEEEESCCTTC----CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred -----cccchhhhhHHhhc----cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence 46789988666543 23678999999999999999999999999999999999987653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.73 E-value=1.8e-17 Score=129.48 Aligned_cols=104 Identities=17% Similarity=0.274 Sum_probs=85.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||||||+|..+..+++.|++|+++|. ++|++.+++++...+. ++.....| ...++...
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~-------------~~~~~~~d---~~~l~~~~ 100 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES-------------NVEFIVGD---ARKLSFED 100 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEECC---TTSCCSCT
T ss_pred CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccc-------------cccccccc---cccccccC
Confidence 5679999999999999999999999999998 5699999988876542 35555533 33444557
Q ss_pred CCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|++..++++.+ +...+++.+.++|+|||++++....
T Consensus 101 ~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 101 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 8999999999998854 6778999999999999999886653
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.69 E-value=6.3e-17 Score=123.84 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=86.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..+|.+|||+|||+|..++.+|+.+++|+++|. +++++.+++|++.+++ .+++++...|..+ ...
T Consensus 31 ~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl-----------~~~v~~~~gda~~---~~~ 96 (186)
T d1l3ia_ 31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL-----------GDNVTLMEGDAPE---ALC 96 (186)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------CTTEEEEESCHHH---HHT
T ss_pred CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCC-----------CcceEEEECchhh---ccc
Confidence 458899999999999999999999899999998 6799999999999987 4688888855432 223
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....||+|+++.... ....+++.+.++|+|+|++++...
T Consensus 97 ~~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~~ 135 (186)
T d1l3ia_ 97 KIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAI 135 (186)
T ss_dssp TSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEee
Confidence 357899999886643 467889999999999999887554
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.68 E-value=1.3e-16 Score=123.03 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=84.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||||||+|..++.++++|.+|+++|+ +.+++.++++++..+. +++.+...|.... . .+
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~------------~~~~~~~~d~~~~---~-~~ 93 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL------------DNLQTDLVDLNTL---T-FD 93 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEECCTTTC---C-CC
T ss_pred CCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc------------cchhhhheecccc---c-cc
Confidence 4569999999999999999999999999998 4599999999887764 4566666444332 2 35
Q ss_pred CCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 143 PPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
++||+|+++.++++. +....+++.+.++|+|||.+++...
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~ 135 (198)
T d2i6ga1 94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA 135 (198)
T ss_dssp CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 789999999999874 4577899999999999999888654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=2.6e-16 Score=125.14 Aligned_cols=103 Identities=19% Similarity=0.243 Sum_probs=83.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++++|||||||||..++.+++.|++|+++|. +.|++.|++++..++. ++++...|+.+.. .
T Consensus 39 ~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~-------------~i~~~~~d~~~l~---~ 102 (251)
T d1wzna1 39 KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-------------KIEFLQGDVLEIA---F 102 (251)
T ss_dssp SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEESCGGGCC---C
T ss_pred CCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc-------------cchheehhhhhcc---c
Confidence 345679999999999999999999999999998 5599999999887653 5788886665432 2
Q ss_pred cCCCccEEEEc-ccccCC--cCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 141 VAPPFDYIIGT-DVVYAE--HLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 141 ~~~~fD~Vi~~-d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.++||+|++. .++++. ++...+++.+.++|+|||++++..
T Consensus 103 -~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 103 -KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp -CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred -ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 4689999986 555553 456789999999999999998754
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.66 E-value=1.2e-16 Score=126.39 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=80.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
.+.+|||+|||+|..+..+++.|++|+++|. ++|++.++++... .+.. ++...++..+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~------------------~~~~---~~~~~l~~~~ 100 (246)
T d2avna1 42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK------------------NVVE---AKAEDLPFPS 100 (246)
T ss_dssp SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS------------------CEEE---CCTTSCCSCT
T ss_pred CCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc------------------cccc---cccccccccc
Confidence 5679999999999999999999999999998 5599988864211 1223 3334455557
Q ss_pred CCccEEEEc-ccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 143 PPFDYIIGT-DVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 143 ~~fD~Vi~~-d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
++||+|++. +++++.++...+++.+.++|+|||.+++..+.
T Consensus 101 ~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~ 142 (246)
T d2avna1 101 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 142 (246)
T ss_dssp TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred ccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECC
Confidence 899999985 78888888999999999999999999887754
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=5.7e-16 Score=125.00 Aligned_cols=122 Identities=17% Similarity=0.268 Sum_probs=93.0
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP 117 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~ 117 (221)
-+..|.++..... ..++.+|||||||+|.+++.+|+. .++|+++|+ +++++.|++|++.+++
T Consensus 93 eTE~lv~~~l~~~--------~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~------- 157 (274)
T d2b3ta1 93 DTECLVEQALARL--------PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------- 157 (274)
T ss_dssp THHHHHHHHHHHS--------CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-------
T ss_pred chhhhhhhHhhhh--------cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-------
Confidence 3556677666552 235678999999999999999875 458999998 5699999999999985
Q ss_pred CCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc-------------------------CHHHHHHHHHHhcC
Q 027594 118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------------------------LLEPLLQTIFALSG 172 (221)
Q Consensus 118 ~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~-------------------------~~~~l~~~~~~ll~ 172 (221)
.++.+...||... ....+||+|++|+|+...+ .+..++....++|+
T Consensus 158 -----~~v~~~~~d~~~~----~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~ 228 (274)
T d2b3ta1 158 -----KNIHILQSDWFSA----LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV 228 (274)
T ss_dssp -----CSEEEECCSTTGG----GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE
T ss_pred -----ccceeeecccccc----cCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC
Confidence 4688888777543 2346899999999976432 24457777888899
Q ss_pred CCeEEEEEEEecCh
Q 027594 173 PKTTILLGYEIRST 186 (221)
Q Consensus 173 ~~g~~~i~~~~r~~ 186 (221)
|+|.+++-......
T Consensus 229 ~~G~l~lEig~~q~ 242 (274)
T d2b3ta1 229 SGGFLLLEHGWQQG 242 (274)
T ss_dssp EEEEEEEECCSSCH
T ss_pred CCCEEEEEECchHH
Confidence 99999986554443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.65 E-value=1.2e-16 Score=125.61 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=84.3
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++++|||||||+|..+..+++.|.+|+++|. +++++.++++.. .++.+...++.+..
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~----------------~~~~~~~~~~~~~~---- 77 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK----------------DGITYIHSRFEDAQ---- 77 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC----------------SCEEEEESCGGGCC----
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc----------------cccccccccccccc----
Confidence 346789999999999999999999999999998 559998886532 34677775554332
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHH-HhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~-~ll~~~g~~~i~~~~ 183 (221)
.+++||+|++.+++++.++...++..+. ++|+|||.+++..+.
T Consensus 78 ~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn 121 (225)
T d2p7ia1 78 LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPN 121 (225)
T ss_dssp CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 3578999999999999999999999987 789999999998764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.65 E-value=1.7e-16 Score=121.31 Aligned_cols=147 Identities=14% Similarity=-0.027 Sum_probs=98.0
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...+|.+|||+|||+|..++.+|++|.+||++|+ +.|++.+++++...................+.+...++.... .
T Consensus 17 ~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~ 94 (201)
T d1pjza_ 17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT--A 94 (201)
T ss_dssp CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST--H
T ss_pred CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc--c
Confidence 3458899999999999999999999999999998 459999998875433211000000000123455555443322 1
Q ss_pred ccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEecChh---------HHHHHHHHHhcCCeEEEecCC
Q 027594 140 AVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRSTS---------VHEQMLQMWKSNFNVKLVPKA 208 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~---------~~~~~~~~~~~~f~v~~v~~~ 208 (221)
.....||+|+++.++++. +.....++.+.++|||||.+++....+... ..+.+.+.+..+|+++.+...
T Consensus 95 ~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~~~~i~~~~~~ 174 (201)
T d1pjza_ 95 RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQ 174 (201)
T ss_dssp HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEEEEES
T ss_pred ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhCCCcEEEEEEEe
Confidence 224589999999888774 357789999999999999988766543321 123344445667887766544
Q ss_pred C
Q 027594 209 K 209 (221)
Q Consensus 209 ~ 209 (221)
.
T Consensus 175 ~ 175 (201)
T d1pjza_ 175 D 175 (201)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6.5e-16 Score=121.09 Aligned_cols=131 Identities=14% Similarity=0.035 Sum_probs=98.4
Q ss_pred CCCCCeEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++.+|||||||+|..+..++. .+.+|+++|+ ++|++.|++++...+. .++++.+.|..+. .
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~------------~~~~f~~~d~~~~---~ 122 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------------RVRNYFCCGLQDF---T 122 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG------------GEEEEEECCGGGC---C
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc------------ccccccccccccc---c
Confidence 44667999999999999988764 4558999998 5699999999887664 4677777665443 3
Q ss_pred ccCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEecChh------------HHHHHHHHHh-cCCeEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRSTS------------VHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~r~~~------------~~~~~~~~~~-~~f~v~~ 204 (221)
...++||+|++..++++... ...+++.+.++|+|+|.+++........ ..+.+.+.++ .+|++..
T Consensus 123 ~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~ 202 (222)
T d2ex4a1 123 PEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA 202 (222)
T ss_dssp CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred cccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence 34679999999999998643 4579999999999999999875433210 2456666665 4898755
Q ss_pred ecC
Q 027594 205 VPK 207 (221)
Q Consensus 205 v~~ 207 (221)
...
T Consensus 203 ~~~ 205 (222)
T d2ex4a1 203 EER 205 (222)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.64 E-value=3e-16 Score=130.22 Aligned_cols=104 Identities=23% Similarity=0.275 Sum_probs=86.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++|++|||||||+|++++.+|++|+ +|+++|.++++..+++++..|+. ..++++...+. ....
T Consensus 35 ~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~-----------~~~i~~i~~~~---~~l~ 100 (328)
T d1g6q1_ 35 DLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGF-----------SDKITLLRGKL---EDVH 100 (328)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCT---TTSC
T ss_pred ccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCc-----------cccceEEEeeh---hhcc
Confidence 345889999999999999999999998 69999987788899999999886 56788888443 4444
Q ss_pred ccCCCccEEEEccccc---CCcCHHHHHHHHHHhcCCCeEEE
Q 027594 140 AVAPPFDYIIGTDVVY---AEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y---~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
.+.++||+|++..+.+ +....+.++..+.++|+|||.++
T Consensus 101 ~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CcccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 4568999999865544 46778999999999999999875
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.64 E-value=2.7e-16 Score=129.81 Aligned_cols=104 Identities=19% Similarity=0.222 Sum_probs=85.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++|++|||||||+|++++.+|++|+ +|+++|.+++...+++++..|+. .+++.+...+. ..+.
T Consensus 30 ~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~-----------~~~v~~~~~~~---~~~~ 95 (316)
T d1oria_ 30 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL-----------DHVVTIIKGKV---EEVE 95 (316)
T ss_dssp HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC-----------TTTEEEEESCT---TTCC
T ss_pred ccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC-----------ccccceEeccH---HHcc
Confidence 356899999999999999999999997 59999987767888889988886 56788887444 4444
Q ss_pred ccCCCccEEEEcccc---cCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 140 AVAPPFDYIIGTDVV---YAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~---y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
...++||+|++..+. +++..++.++..+.++|+|||.++
T Consensus 96 ~~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 96 LPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp CSSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred cccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 456799999886543 446789999999999999999876
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.64 E-value=1.1e-16 Score=118.65 Aligned_cols=108 Identities=15% Similarity=0.269 Sum_probs=86.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++|++|||+|||||.+|+.++.+|+ +|+++|. +++++.+++|++.++. .+++++.+.|+... +
T Consensus 11 ~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~-----------~~~~~ii~~D~~~~--l 77 (152)
T d2esra1 11 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----------ENRFTLLKMEAERA--I 77 (152)
T ss_dssp SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----------GGGEEEECSCHHHH--H
T ss_pred hhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc-----------ccchhhhccccccc--c
Confidence 456899999999999999999999997 6999998 6799999999999886 46788888665443 2
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHH--hcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~--ll~~~g~~~i~~~ 182 (221)
.....+||+|++.|| |........+..+.. +|+|+|.+++...
T Consensus 78 ~~~~~~fDiIf~DPP-y~~~~~~~~l~~i~~~~~L~~~g~iiiE~~ 122 (152)
T d2esra1 78 DCLTGRFDLVFLDPP-YAKETIVATIEALAAKNLLSEQVMVVCETD 122 (152)
T ss_dssp HHBCSCEEEEEECCS-SHHHHHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccccccceeEechh-hccchHHHHHHHHHHCCCcCCCeEEEEEeC
Confidence 234678999999655 666677777887764 5899999887544
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.9e-15 Score=119.01 Aligned_cols=158 Identities=18% Similarity=0.092 Sum_probs=108.5
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCC-C-
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN-P- 117 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~-~- 117 (221)
....|.+++.+.. ...++.+|||+|||+|..++.+|+.|++||++|+ +.+++.++++............ +
T Consensus 29 ~~~~l~~~~~~~l-------~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~ 101 (229)
T d2bzga1 29 GHQLLKKHLDTFL-------KGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPG 101 (229)
T ss_dssp CCHHHHHHHHHHH-------TTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTT
T ss_pred CCHHHHHHHHHhc-------CCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccc
Confidence 3567777776552 3447789999999999999999999999999998 5599988876554322100000 0
Q ss_pred ---CCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEEecChh-----
Q 027594 118 ---GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYEIRSTS----- 187 (221)
Q Consensus 118 ---~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~----- 187 (221)
......++++...|+.... ......||+|+...++++ ++..+..++.+.++|+|||++++....+...
T Consensus 102 ~~~~~~~~~~v~~~~~d~~~l~--~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gp 179 (229)
T d2bzga1 102 TKVFKSSSGNISLYCCSIFDLP--RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGP 179 (229)
T ss_dssp CEEEEETTSSEEEEESCGGGGG--GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCS
T ss_pred cceeeecCCcEEEEEcchhhcc--ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCC
Confidence 0011346677765543322 234578999999988876 4678899999999999999988776554321
Q ss_pred ----HHHHHHHHHhcCCeEEEecC
Q 027594 188 ----VHEQMLQMWKSNFNVKLVPK 207 (221)
Q Consensus 188 ----~~~~~~~~~~~~f~v~~v~~ 207 (221)
....+.+.+...|.++.+..
T Consensus 180 p~~~~~~el~~lf~~~~~i~~le~ 203 (229)
T d2bzga1 180 PFYVPHAEIERLFGKICNIRCLEK 203 (229)
T ss_dssp SCCCCHHHHHHHHTTTEEEEEEEE
T ss_pred CCCCCHHHHHHHhcCCCEEEEEEE
Confidence 13445566677888766643
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.4e-15 Score=125.09 Aligned_cols=104 Identities=21% Similarity=0.261 Sum_probs=81.7
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
..++|++|||||||+|++++.+|+.|+ +|+++|.++....+++++..|+. .+++.+... +...+.
T Consensus 32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~-----------~~~i~~~~~---~~~~l~ 97 (311)
T d2fyta1 32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL-----------EDTITLIKG---KIEEVH 97 (311)
T ss_dssp GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEES---CTTTSC
T ss_pred ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCC-----------CccceEEEe---eHHHhc
Confidence 567899999999999999999999997 69999986644566777777765 467888874 444444
Q ss_pred ccCCCccEEEEcccccC---CcCHHHHHHHHHHhcCCCeEEE
Q 027594 140 AVAPPFDYIIGTDVVYA---EHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~---~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
....+||+|++..+.+. ...++.++....++|+|||+++
T Consensus 98 ~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 98 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 45679999998655443 4567788888899999999876
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.62 E-value=8.7e-16 Score=122.02 Aligned_cols=102 Identities=15% Similarity=0.090 Sum_probs=82.0
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++++|||||||+|..++.++++|.+|+++|. ++|++.|++++..++. ++++...|+.+..
T Consensus 35 ~~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~-------------~v~~~~~d~~~~~---- 97 (246)
T d1y8ca_ 35 NLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-------------KPRLACQDISNLN---- 97 (246)
T ss_dssp TCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEECCCGGGCC----
T ss_pred CCCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc-------------cceeeccchhhhc----
Confidence 345679999999999999999999999999998 5599999998877653 5788876665543
Q ss_pred cCCCccEEEEc-ccccC---CcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 141 VAPPFDYIIGT-DVVYA---EHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 141 ~~~~fD~Vi~~-d~~y~---~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
..++||+|++. .++++ ......+++.+.++|+|||.+++.
T Consensus 98 ~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~ 141 (246)
T d1y8ca_ 98 INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD 141 (246)
T ss_dssp CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 25689999974 45443 446677899999999999998864
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.61 E-value=1.5e-15 Score=123.24 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=85.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..++.+|||+|||+|..++.++.. +++|+++|. +.+++.+++++...+. ++++...|..+
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-------------~~~f~~~d~~~--- 88 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-------------DSEFLEGDATE--- 88 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-------------EEEEEESCTTT---
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-------------ccccccccccc---
Confidence 346789999999999999999874 578999998 5699999999887643 56777654433
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+. .++||+|+++.++++.++...+++.+.++|+|||.+++..+
T Consensus 89 ~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~ 132 (281)
T d2gh1a1 89 IEL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEP 132 (281)
T ss_dssp CCC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccc-cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEEC
Confidence 322 45799999999999999999999999999999999988664
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.61 E-value=2.9e-15 Score=117.54 Aligned_cols=107 Identities=14% Similarity=0.114 Sum_probs=83.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~----ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++.+|||||||+|..++.+++. +++|+++|. ++|++.|++++...+. ..++.+.. .+..
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----------~~~~~~~~---~d~~- 102 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILC---NDIR- 102 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----------SSCEEEEC---SCTT-
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----------cchhhhcc---chhh-
Confidence 36779999999999999999863 678999998 5699999999886553 23444443 2222
Q ss_pred ccccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 138 IKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
..+...+|+|+++.++++. ++...+++.+.+.|+|||.+++....+.
T Consensus 103 -~~~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~ 151 (225)
T d1im8a_ 103 -HVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 151 (225)
T ss_dssp -TCCCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred -ccccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence 2235689999999888874 5788999999999999999999876543
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.60 E-value=5.8e-15 Score=119.73 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=85.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
...+|.+|||||||+|.+++.+++. |++||++|+ ++.++.+++.++..++ ..++.+...|+.+
T Consensus 49 ~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l-----------~~~~~~~~~d~~~---- 113 (280)
T d2fk8a1 49 DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----------NRSRQVLLQGWED---- 113 (280)
T ss_dssp CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCGGG----
T ss_pred CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcc-----------ccchhhhhhhhhh----
Confidence 4568899999999999999988865 999999998 5599999999888775 3456665544322
Q ss_pred cccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+.+||.|++.+++.+. ...+.+++.+.++|||||++++-..
T Consensus 114 --~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 114 --FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp --CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred --hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 25689999999999886 4568999999999999999988543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.60 E-value=5.8e-15 Score=117.97 Aligned_cols=103 Identities=16% Similarity=0.093 Sum_probs=84.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+.++|||||||+|..++.+++. +.+++++|.+++++.+++++...+. .+++++...|..+. .
T Consensus 80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~rv~~~~~D~~~~-----~ 143 (253)
T d1tw3a2 80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL-----------SDRVDVVEGDFFEP-----L 143 (253)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC-----C
T ss_pred cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhc-----------ccchhhccccchhh-----c
Confidence 4579999999999999999987 4578899998899999999988765 46788888654321 2
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
..+||+|+++.++++.++ ...+++.+.++|+|||+++|...
T Consensus 144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~ 186 (253)
T d1tw3a2 144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER 186 (253)
T ss_dssp SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence 357999999999988644 45789999999999999998764
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.59 E-value=1.1e-15 Score=115.37 Aligned_cols=116 Identities=21% Similarity=0.180 Sum_probs=81.0
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCC
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL 122 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~ 122 (221)
.|..+|... ..+|.+|||+|||+|.+|+.++..|++|+++|. +++++.+++|++.++. .
T Consensus 30 ~lf~~l~~~---------~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~-----------~ 89 (171)
T d1ws6a1 30 ALFDYLRLR---------YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL-----------G 89 (171)
T ss_dssp HHHHHHHHH---------CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC-----------C
T ss_pred HHHHHhhcc---------ccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhcc-----------c
Confidence 555666643 347889999999999999999999999999998 6699999999999886 2
Q ss_pred CceEEEEEEecCCC-CccccCCCccEEEEcccccCCcCHHHHHHHHH-HhcCCCeEEEEEEE
Q 027594 123 GSIQAVELDWGNED-HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIF-ALSGPKTTILLGYE 182 (221)
Q Consensus 123 ~~v~~~~~dw~~~~-~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~-~ll~~~g~~~i~~~ 182 (221)
.++.... ..... .......+||+|+++|| |..+..+.+...+. .+|+|+|.+++.+.
T Consensus 90 ~~v~~~~--~d~~~~~~~~~~~~fD~If~DPP-Y~~~~~~~l~~l~~~~ll~~~g~ivie~~ 148 (171)
T d1ws6a1 90 ARVVALP--VEVFLPEAKAQGERFTVAFMAPP-YAMDLAALFGELLASGLVEAGGLYVLQHP 148 (171)
T ss_dssp CEEECSC--HHHHHHHHHHTTCCEEEEEECCC-TTSCTTHHHHHHHHHTCEEEEEEEEEEEE
T ss_pred cceeeee--hhcccccccccCCccceeEEccc-cccCHHHHHHHHHHcCCcCCCeEEEEEec
Confidence 3333222 11100 11233568999998766 65554444444443 46899998877554
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.58 E-value=1.1e-14 Score=118.88 Aligned_cols=151 Identities=17% Similarity=0.092 Sum_probs=103.4
Q ss_pred cceEEEEEcCeEEEEeeCCCCCcccceec--chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCE
Q 027594 11 TSVINLEVLGHQLQFSQDPNSKHLGTTVW--DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN 88 (221)
Q Consensus 11 ~~~~~~~~~~~~~~i~~~~~~~~~g~~~W--~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~ 88 (221)
.....+...|..+.+.-.. ...+|...= +.-..+.+++.. ..++++||||+||||..|+.+++.|++
T Consensus 88 p~~~~v~e~gl~f~v~~~~-~~~tG~f~dqr~nr~~~~~~~~~----------~~~~~rVLdlf~~tG~~sl~aa~~GA~ 156 (309)
T d2igta1 88 GETWPLSLLGVEFLGRFTA-FRHVGVFPEQIVHWEWLKNAVET----------ADRPLKVLNLFGYTGVASLVAAAAGAE 156 (309)
T ss_dssp CSEEEEEETTEEEEEECCS-SSCCSCCGGGHHHHHHHHHHHHH----------SSSCCEEEEETCTTCHHHHHHHHTTCE
T ss_pred CCeEEEEEeEEEEEEeccC-CCccccccchhHHHHHHHHHHhh----------ccCCCeEEEecCCCcHHHHHHHhCCCe
Confidence 4456777778777776543 344554310 111123333332 236889999999999999999999999
Q ss_pred EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-ccccCCCccEEEEcccccCC---------
Q 027594 89 VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAE--------- 157 (221)
Q Consensus 89 v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~~~~~fD~Vi~~d~~y~~--------- 157 (221)
||++|. ..+++.+++|++.|++. ..+++++..|..+... ......+||+||+.+|-|..
T Consensus 157 V~~VD~s~~al~~a~~N~~ln~~~----------~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~ 226 (309)
T d2igta1 157 VTHVDASKKAIGWAKENQVLAGLE----------QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQL 226 (309)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCT----------TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEH
T ss_pred EEEEeChHHHHHHHHHhhhhhccc----------CCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHH
Confidence 999998 55999999999999862 2357777644322211 11235789999999887631
Q ss_pred -cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 158 -HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 158 -~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
..+..++..+.++|+|+|.++++..
T Consensus 227 ~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 227 FDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp HHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 2456788888999999997666544
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.58 E-value=2e-14 Score=111.66 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=99.3
Q ss_pred cceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhh
Q 027594 35 GTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 35 g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
+.+.|+.-. .||..+..... -...+|.+|||||||+|..+..+|... .+|+++|+ +.+++.++++++..
T Consensus 31 ~~r~w~p~rsklaa~i~~g~~-----l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~-- 103 (209)
T d1nt2a_ 31 GYREWVPWRSKLAAMILKGHR-----LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER-- 103 (209)
T ss_dssp TEEECCGGGCHHHHHHHTSCC-----CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--
T ss_pred ceeeeCCcchHHHHHHhcccc-----CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--
Confidence 457787432 45555553211 245688999999999999999998753 47999998 66999999887764
Q ss_pred ccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh----
Q 027594 111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST---- 186 (221)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~---- 186 (221)
+++.++..+.............+|+|+. + +++......+++.+.++|+|||.++++...+..
T Consensus 104 ------------~ni~~i~~d~~~~~~~~~~~~~vd~v~~-~-~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~ 169 (209)
T d1nt2a_ 104 ------------NNIIPLLFDASKPWKYSGIVEKVDLIYQ-D-IAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTA 169 (209)
T ss_dssp ------------SSEEEECSCTTCGGGTTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTS
T ss_pred ------------CCceEEEeeccCccccccccceEEEEEe-c-ccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCC
Confidence 3566666443332222222234555543 3 556667888999999999999999998765432
Q ss_pred ---hHHHHHHHHHhcCCeEEEe
Q 027594 187 ---SVHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 187 ---~~~~~~~~~~~~~f~v~~v 205 (221)
.+.+...+.++.+|++.+.
T Consensus 170 ~~~~~~~~~~~~l~~gf~i~E~ 191 (209)
T d1nt2a_ 170 EPEEVFKSVLKEMEGDFKIVKH 191 (209)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCEEEEE
Confidence 1233334444678988543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.57 E-value=8e-15 Score=112.66 Aligned_cols=71 Identities=25% Similarity=0.403 Sum_probs=57.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+++|++|||+|||+|.+++.++.+|+ +|+++|+ +++++.+++|+. ++.+...|+..
T Consensus 45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~-----------------~~~~~~~D~~~---- 103 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------------GVNFMVADVSE---- 103 (197)
T ss_dssp TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCGGG----
T ss_pred CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc-----------------cccEEEEehhh----
Confidence 567899999999999999999999987 5999998 569999998753 34566655432
Q ss_pred cccCCCccEEEEcccc
Q 027594 139 KAVAPPFDYIIGTDVV 154 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~ 154 (221)
..++||+|++|+|+
T Consensus 104 --l~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 104 --ISGKYDTWIMNPPF 117 (197)
T ss_dssp --CCCCEEEEEECCCC
T ss_pred --cCCcceEEEeCccc
Confidence 25689999999885
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.57 E-value=4.5e-15 Score=118.41 Aligned_cols=107 Identities=14% Similarity=0.047 Sum_probs=83.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
++++|||||||+|.....+++.+. +|+++|. ++|++.|++.....+. ..++.+...|..... ...
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-----------~~~v~f~~~D~~~~~--~~~ 90 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----------RFKVFFRAQDSYGRH--MDL 90 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----------SSEEEEEESCTTTSC--CCC
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC-----------CcceEEEEcchhhhc--ccc
Confidence 678999999999998888888875 7999998 5599999988776543 346777775542221 123
Q ss_pred CCCccEEEEcccccCC----cCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~----~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
..+||+|++..++++. ..+..+++.+.++|+|||.+++..+.
T Consensus 91 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 91 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 5689999999888763 45678999999999999999886653
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.56 E-value=2.9e-14 Score=117.56 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=85.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-ccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~~ 140 (221)
.+|++|||++||+|..++.+|+.+++|+++|. +.+++.+++|++.|++ ++++++..|..+... ...
T Consensus 144 ~~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl------------~~~~~i~~d~~~~~~~~~~ 211 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL------------GNVRVLEANAFDLLRRLEK 211 (318)
T ss_dssp CCEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEESCHHHHHHHHHH
T ss_pred hCCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCC------------CCcceeeccHHHHhhhhHh
Confidence 37899999999999999999887778999998 5599999999999986 567777765533211 223
Q ss_pred cCCCccEEEEcccccCCc---------CHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~---------~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
...+||+|++.++.+... ....++..+.++|+|||.++++....
T Consensus 212 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~ 264 (318)
T d1wxxa2 212 EGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 264 (318)
T ss_dssp TTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred hhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 357899999998866422 24467888888999999988866543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=5.1e-14 Score=114.57 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=91.2
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~ 120 (221)
....+++.+.+ ...+|.+|||||||.|.+++.+| +.|++|+++++ ++.++.+++.+...++
T Consensus 47 ~~k~~~~~~~l-------~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l---------- 109 (291)
T d1kpia_ 47 YAKRKLALDKL-------NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS---------- 109 (291)
T ss_dssp HHHHHHHHHTT-------CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHhc-------CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhcc----------
Confidence 34455565553 56689999999999999999887 57999999998 4588888888887765
Q ss_pred CCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc---------CHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~---------~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
...+.+...|+. ..+++||.|++-.++-+.. ..+.+++.+.++|+|||++++-...
T Consensus 110 -~~~v~~~~~d~~------~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~ 174 (291)
T d1kpia_ 110 -PRRKEVRIQGWE------EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174 (291)
T ss_dssp -SSCEEEEECCGG------GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred -chhhhhhhhccc------ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence 456666654432 2367899999999987754 3689999999999999999885543
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.56 E-value=1.2e-14 Score=116.32 Aligned_cols=125 Identities=12% Similarity=0.046 Sum_probs=91.0
Q ss_pred CCCCeEEEeCCCccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.++.+|||+|||+|.++..++. .+.+|+++|. +++++.|+++.... .++++...+..+ ...
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~--------------~~~~~~~~d~~~---~~~ 154 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--------------PVGKFILASMET---ATL 154 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--------------SEEEEEESCGGG---CCC
T ss_pred CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc--------------ccceeEEccccc---ccc
Confidence 3567999999999999988765 4567999998 56999998765432 346776654433 333
Q ss_pred cCCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEecCh-------------hHHHHHHHHHh-cCCeEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~r~~-------------~~~~~~~~~~~-~~f~v~~ 204 (221)
..++||+|++..++++..+ ...+++.+.++|+|||.+++....... ...+.+.+.++ .+|++.+
T Consensus 155 ~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~ 234 (254)
T d1xtpa_ 155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVK 234 (254)
T ss_dssp CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEE
T ss_pred CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEE
Confidence 4678999999999998644 568899999999999999986543221 01345666665 4897743
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.56 E-value=2.9e-14 Score=115.74 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=94.7
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG 118 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~ 118 (221)
+.....+++.+.+ ...+|.+|||||||.|-+++.+| +.|++|+++++ ++-++.+++.++..++
T Consensus 46 AQ~~k~~~~~~~l-------~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~-------- 110 (285)
T d1kpga_ 46 AQIAKIDLALGKL-------GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-------- 110 (285)
T ss_dssp HHHHHHHHHHTTT-------TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC--------
T ss_pred HHHHHHHHHHHHc-------CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh--------
Confidence 3445556776663 56689999999999999999876 56999999998 5588999988887765
Q ss_pred CCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC--cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE--HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 119 ~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~--~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+++++...|+... +.+||.|++-..+.+. .....+++.+.++|+|||++++-..
T Consensus 111 ---~~~v~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i 167 (285)
T d1kpga_ 111 ---LRSKRVLLAGWEQF------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI 167 (285)
T ss_dssp ---CSCEEEEESCGGGC------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ---hhhhHHHHhhhhcc------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence 46788887666433 4689999999998885 4568999999999999999987554
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=4.7e-15 Score=120.80 Aligned_cols=111 Identities=16% Similarity=0.180 Sum_probs=81.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
.+++|||||||+|..++.+|+.|++|+++|. ++|++.|+++...++.... .....+...+|...+......
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 127 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPA--------FDKWVIEEANWLTLDKDVPAG 127 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH--------HHTCEEEECCGGGHHHHSCCT
T ss_pred CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccc--------cceeeeeeccccccccccCCC
Confidence 4679999999999999999999999999998 5699999998877653110 112344555554332111235
Q ss_pred CCccEEEEc-ccccCC-------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 143 PPFDYIIGT-DVVYAE-------HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 143 ~~fD~Vi~~-d~~y~~-------~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.+||+|++. +++.+. ++...+++.+.++|+|||.+++...
T Consensus 128 ~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 689999875 455442 3467799999999999999888654
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.55 E-value=3.4e-14 Score=111.91 Aligned_cols=151 Identities=11% Similarity=0.073 Sum_probs=105.9
Q ss_pred cceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhh
Q 027594 35 GTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 35 g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
..+.|+.-. .||..|...+.. -...+|.+|||||||+|..+..+|..+ ..|+++|. +.|++.++.++..+
T Consensus 48 e~r~w~p~rsklaA~i~~gl~~----l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~-- 121 (230)
T d1g8sa_ 48 EYRIWNPNKSKLAAAIIKGLKV----MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER-- 121 (230)
T ss_dssp EEEECCTTTCHHHHHHHTTCCC----CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--
T ss_pred eeeeECCCccHHHHHHHhhHHh----CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--
Confidence 467787644 566666554211 245689999999999999999999875 47999998 56999998876553
Q ss_pred ccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChh---
Q 027594 111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS--- 187 (221)
Q Consensus 111 ~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~--- 187 (221)
+++..+..+...... .....+|++++...+++......++..+.++|+|||.++++...+..+
T Consensus 122 ------------~ni~~i~~d~~~~~~--~~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~ 187 (230)
T d1g8sa_ 122 ------------ENIIPILGDANKPQE--YANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTK 187 (230)
T ss_dssp ------------TTEEEEECCTTCGGG--GTTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS
T ss_pred ------------cccceEEEeeccCcc--cccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCC
Confidence 345555544433322 234567777766677888889999999999999999999987765421
Q ss_pred ----HHHHHHHHHh-cCCeEEEe
Q 027594 188 ----VHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 188 ----~~~~~~~~~~-~~f~v~~v 205 (221)
..+...+.++ .+|++.+.
T Consensus 188 ~~~~~~~e~~~~L~~aGF~ive~ 210 (230)
T d1g8sa_ 188 DPKEIFKEQKEILEAGGFKIVDE 210 (230)
T ss_dssp CHHHHHHHHHHHHHHHTEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCEEEEE
Confidence 2344445554 58987443
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=9.8e-15 Score=120.73 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=90.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC-Cccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~-~~~~ 140 (221)
+|++|||+|||+|..++.+|+.|+ +|+++|. +.+++.+++|++.|++ .+++++...|..+.. ....
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl-----------~~~~~~~~~d~~~~~~~~~~ 213 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----------EDRMKFIVGSAFEEMEKLQK 213 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHHHH
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCC-----------CccceeeechhhhhhHHHHh
Confidence 688999999999999999999987 6999998 5699999999999997 356777774432211 1122
Q ss_pred cCCCccEEEEcccccCCc---------CHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH
Q 027594 141 VAPPFDYIIGTDVVYAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW 196 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~---------~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~ 196 (221)
...+||+|++.+|.+... ....++..+.++|+|||.++++.....-. .+.|.+..
T Consensus 214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~-~~~f~~~v 277 (324)
T d2as0a2 214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-LQMFKDMI 277 (324)
T ss_dssp TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-HHHHHHHH
T ss_pred ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCC-HHHHHHHH
Confidence 357899999988866432 35568888888999999988876555433 34555443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.51 E-value=1.4e-13 Score=113.25 Aligned_cols=113 Identities=17% Similarity=0.111 Sum_probs=86.5
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-cc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~~ 139 (221)
.+|++|||++||+|..|+.++..|+ +|+++|. +.+++.+++|++.|++. ..+++++..|.-+... ..
T Consensus 143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~----------~~~~~~i~~d~~~~l~~~~ 212 (317)
T d2b78a2 143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----------MANHQLVVMDVFDYFKYAR 212 (317)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----------CTTEEEEESCHHHHHHHHH
T ss_pred hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc----------CcceEEEEccHHHHHHHHH
Confidence 3689999999999999999998888 5999998 55999999999999862 2467777744322110 11
Q ss_pred ccCCCccEEEEcccccCC---------cCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 140 AVAPPFDYIIGTDVVYAE---------HLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~---------~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
....+||+||..+|-+.. ..+..|+..+.++|+|||.++++.....
T Consensus 213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~ 267 (317)
T d2b78a2 213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 267 (317)
T ss_dssp HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 235689999999887642 2356788889999999999988776544
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.50 E-value=1.4e-13 Score=106.29 Aligned_cols=77 Identities=27% Similarity=0.375 Sum_probs=62.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+.+|++|||+|||||.+++.++..|+ +|+++|+ +++++.+++|++.++. +..+...|...
T Consensus 43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-------------~~~~~~~d~~~---- 105 (201)
T d1wy7a1 43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------------KFKVFIGDVSE---- 105 (201)
T ss_dssp TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------------SEEEEESCGGG----
T ss_pred CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-------------CceEEECchhh----
Confidence 677999999999999999999999987 7999998 5699999999887764 45555533321
Q ss_pred cccCCCccEEEEcccccC
Q 027594 139 KAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~ 156 (221)
...+||+|++++|+..
T Consensus 106 --~~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 106 --FNSRVDIVIMNPPFGS 121 (201)
T ss_dssp --CCCCCSEEEECCCCSS
T ss_pred --hCCcCcEEEEcCcccc
Confidence 2578999999988654
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=4.2e-14 Score=114.21 Aligned_cols=107 Identities=19% Similarity=0.283 Sum_probs=79.7
Q ss_pred CCeEEEeCCCccHHHHHHHHh------C--CEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 65 GKRVIELGAGCGVAGFGMALL------G--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~------g--a~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
+.+|||||||+|..+..++.. + .+++++|.+ .|++.++++++.... ..++ .++|...
T Consensus 41 ~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~-----------~~~~---~~~~~~~ 106 (280)
T d1jqea_ 41 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN-----------LENV---KFAWHKE 106 (280)
T ss_dssp EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS-----------CTTE---EEEEECS
T ss_pred CCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc-----------cccc---cccchhh
Confidence 347999999999988877643 2 358999984 599999988765321 1233 3444433
Q ss_pred CC--------ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 136 DH--------IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 136 ~~--------~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
.. .....++||+|++..++|+.++...+++.+.++|+|||.+++......
T Consensus 107 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 107 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp CHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred hhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 21 123467999999999999999999999999999999999888765433
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=2.9e-14 Score=108.55 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=83.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..+++||||+||||.+|+.++.+|+ +|+++|. +++++.+++|++.++. .++.+...|.... +..
T Consensus 42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~------------~~~~ii~~d~~~~--l~~ 107 (183)
T d2fpoa1 42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------------GNARVVNSNAMSF--LAQ 107 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCHHHH--HSS
T ss_pred cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc------------cceeeeeeccccc--ccc
Confidence 4778999999999999999999998 5999998 6699999999988764 4566665443222 222
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHH--hcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~--ll~~~g~~~i~~~ 182 (221)
...+||+|++.|| |.....+.++..+.+ +|+++|.+++-..
T Consensus 108 ~~~~fDlIf~DPP-Y~~~~~~~~l~~l~~~~~L~~~~iIiiE~~ 150 (183)
T d2fpoa1 108 KGTPHNIVFVDPP-FRRGLLEETINLLEDNGWLADEALIYVESE 150 (183)
T ss_dssp CCCCEEEEEECCS-SSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred cccccCEEEEcCc-cccchHHHHHHHHHHCCCCCCCeEEEEEec
Confidence 4578999998776 777788888888876 5899999888544
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=9.8e-15 Score=116.19 Aligned_cols=146 Identities=16% Similarity=0.174 Sum_probs=93.7
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhcccc---------CCCCCC--------
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQ---------MNPGSD-------- 120 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~---------~~~~~~-------- 120 (221)
+...++++|||||||+|..++.++..+. +|+++|+ +.+++.+++++..+...... ......
T Consensus 47 ~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (257)
T d2a14a1 47 PGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEK 126 (257)
T ss_dssp TTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHH
Confidence 4556788999999999999888887766 5999998 45999999998765421100 000000
Q ss_pred CCCceEEEEEEecCC---CCccccCCCccEEEEcccccCC----cCHHHHHHHHHHhcCCCeEEEEEEEecCh-------
Q 027594 121 LLGSIQAVELDWGNE---DHIKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIRST------- 186 (221)
Q Consensus 121 ~~~~v~~~~~dw~~~---~~~~~~~~~fD~Vi~~d~~y~~----~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------- 186 (221)
....+... ...... ...+...++||+|++..++++. +....+++.+.++|||||.+++.......
T Consensus 127 ~~~~~~~~-~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~ 205 (257)
T d2a14a1 127 LRAAVKRV-LKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKR 205 (257)
T ss_dssp HHHHEEEE-EECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTE
T ss_pred Hhhhhhcc-cccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccc
Confidence 00001111 111111 1112346789999999988763 46778999999999999999987654321
Q ss_pred ------hHHHHHHHHHh-cCCeEEEec
Q 027594 187 ------SVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 187 ------~~~~~~~~~~~-~~f~v~~v~ 206 (221)
-..+.+.+.++ .+|++..+.
T Consensus 206 ~~~~~~~~~~~~~~~l~~aGf~v~~~~ 232 (257)
T d2a14a1 206 EFSCVALEKGEVEQAVLDAGFDIEQLL 232 (257)
T ss_dssp EEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cccccCCCHHHHHHHHHHCCCEEEEEE
Confidence 11355666664 589887663
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.48 E-value=1.6e-13 Score=106.78 Aligned_cols=100 Identities=25% Similarity=0.248 Sum_probs=76.3
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||||||+|..+..+|+. | .+|+++|. +++++.+++|++..+. .++.+.. ++..
T Consensus 72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------------~n~~~~~---~d~~ 136 (213)
T d1dl5a1 72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------------ENVIFVC---GDGY 136 (213)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEE---SCGG
T ss_pred hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------------ccccccc---CchH
Confidence 4568899999999999999999875 4 47999997 6699999999998775 5666665 3333
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.......+||+|+++..+.+.. ..+.+.|+|||++++..
T Consensus 137 ~~~~~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 137 YGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred HccccccchhhhhhhccHHHhH------HHHHHhcCCCcEEEEEE
Confidence 3233456899999987776532 34567799999987743
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.48 E-value=9.8e-14 Score=110.36 Aligned_cols=119 Identities=13% Similarity=0.116 Sum_probs=87.5
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||+|||+|.+++.+|+. + .+|+++|. +++++.|++|++.+.. ..++.+...|+.+.
T Consensus 82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----------~~nv~~~~~Di~~~- 149 (250)
T d1yb2a1 82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----------IGNVRTSRSDIADF- 149 (250)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----------CTTEEEECSCTTTC-
T ss_pred CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----------CCceEEEEeeeecc-
Confidence 5668999999999999999999975 3 47999998 5699999999998653 36788887655433
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCe
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN 201 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~ 201 (221)
..+..||.|+.. ..+....+..+.++|||||++++..+. .+-.++..+.++ .+|.
T Consensus 150 ---~~~~~fD~V~ld-----~p~p~~~l~~~~~~LKpGG~lv~~~P~--i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 150 ---ISDQMYDAVIAD-----IPDPWNHVQKIASMMKPGSVATFYLPN--FDQSEKTVLSLSASGMH 205 (250)
T ss_dssp ---CCSCCEEEEEEC-----CSCGGGSHHHHHHTEEEEEEEEEEESS--HHHHHHHHHHSGGGTEE
T ss_pred ---cccceeeeeeec-----CCchHHHHHHHHHhcCCCceEEEEeCC--cChHHHHHHHHHHCCCc
Confidence 235789999863 234456789999999999998764432 122345555554 4674
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.48 E-value=3.2e-14 Score=108.18 Aligned_cols=110 Identities=15% Similarity=0.241 Sum_probs=84.9
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH- 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~- 137 (221)
...+|++||||+||||.+|+.++.+||+ |+++|. +++++.+++|++.++. .+++++...|......
T Consensus 38 ~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~-----------~~~~~i~~~D~~~~l~~ 106 (182)
T d2fhpa1 38 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----------PEKFEVRKMDANRALEQ 106 (182)
T ss_dssp SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHHHH
T ss_pred HhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc-----------ccccccccccchhhhhh
Confidence 3568899999999999999999999995 999998 5699999999998875 3567777755433211
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHH--hcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~--ll~~~g~~~i~~~ 182 (221)
......+||+|++.|| |.......++..+.. +|+++|.+++-+.
T Consensus 107 ~~~~~~~fDlIflDPP-Y~~~~~~~~l~~i~~~~~L~~~giIi~E~~ 152 (182)
T d2fhpa1 107 FYEEKLQFDLVLLDPP-YAKQEIVSQLEKMLERQLLTNEAVIVCETD 152 (182)
T ss_dssp HHHTTCCEEEEEECCC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred hcccCCCcceEEechh-hhhhHHHHHHHHHHHCCCCCCCEEEEEEcC
Confidence 1123568999998776 666777888888765 6899998876443
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.47 E-value=1.3e-13 Score=106.30 Aligned_cols=95 Identities=13% Similarity=0.201 Sum_probs=75.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++.+|||||||+|..+..+ ++++++|. +.+++.++++ ++.+... +...++..+
T Consensus 36 ~~~~vLDiGcG~G~~~~~~----~~~~giD~s~~~~~~a~~~-------------------~~~~~~~---d~~~l~~~~ 89 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKR-------------------GVFVLKG---TAENLPLKD 89 (208)
T ss_dssp CSSCEEEETCTTSTTHHHH----TCCEEEESCHHHHHHHHHT-------------------TCEEEEC---BTTBCCSCT
T ss_pred CCCeEEEECCCCccccccc----ceEEEEeCChhhccccccc-------------------ccccccc---ccccccccc
Confidence 3458999999999877665 35789998 5688887753 2455553 334444557
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEec
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIR 184 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r 184 (221)
++||+|+++.++++.++...+++.+.++|+|||.+++.....
T Consensus 90 ~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 90 ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp TCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence 899999999999999999999999999999999999987653
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=2.4e-13 Score=108.87 Aligned_cols=124 Identities=17% Similarity=0.206 Sum_probs=89.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+|.+|||+|||+|.+++.+|+.|+ +|+++|. +++++.+++|++.|++ .+++++.+.|..+.. .
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l-----------~~~v~~~~~D~~~~~----~ 171 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFP----G 171 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCC----C
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCC-----------CceEEEEEcchHHhc----c
Confidence 688999999999999999998885 8999998 6799999999999997 567888886543322 2
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh----hHHHHHHHHHh-cCCeEEEec
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~----~~~~~~~~~~~-~~f~v~~v~ 206 (221)
...||.|+++++.+.. .++....+++++||.+.+-...... ...+.+.+..+ .+++++.+.
T Consensus 172 ~~~~D~Ii~~~p~~~~----~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~ 237 (260)
T d2frna1 172 ENIADRILMGYVVRTH----EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN 237 (260)
T ss_dssp CSCEEEEEECCCSSGG----GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCEEEECCCCchH----HHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEEE
Confidence 5689999998775543 4556677889999987553222211 12333333333 477776543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=7.3e-13 Score=103.89 Aligned_cols=152 Identities=18% Similarity=0.168 Sum_probs=101.0
Q ss_pred ccceecchHH-HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHh
Q 027594 34 LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWN 108 (221)
Q Consensus 34 ~g~~~W~~~~-~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n 108 (221)
...++|+.-. .||..|...+.. ....+|.+|||||||+|..+..+|.. | .+|+++|. +.+++.++++++..
T Consensus 46 ~e~R~w~p~rSKlaa~i~~~l~~----l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~ 121 (227)
T d1g8aa_ 46 EEYRIWNPNRSKLGAAIMNGLKN----FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER 121 (227)
T ss_dssp EEEEECCTTTCHHHHHHHTTCCC----CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC
T ss_pred eeEEEECCCccHHHHHHHccccc----cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc
Confidence 3567776522 455555543211 24568999999999999999999975 4 57999998 56999999887654
Q ss_pred hhccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh--
Q 027594 109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-- 186 (221)
Q Consensus 109 ~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~-- 186 (221)
. ++..+..|-............+|+|+. | +.+......++..+.+.|+|||.++++...+..
T Consensus 122 ~--------------~~~~i~~d~~~~~~~~~~~~~vD~i~~-d-~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~ 185 (227)
T d1g8aa_ 122 R--------------NIVPILGDATKPEEYRALVPKVDVIFE-D-VAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDV 185 (227)
T ss_dssp T--------------TEEEEECCTTCGGGGTTTCCCEEEEEE-C-CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCT
T ss_pred C--------------CceEEEEECCCcccccccccceEEEEE-E-ccccchHHHHHHHHHHhcccCCeEEEEEECCccCC
Confidence 3 345555443333333333467888875 4 345566788999999999999999998765432
Q ss_pred -----hHHHHHHHHHhcCCeEEEe
Q 027594 187 -----SVHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 187 -----~~~~~~~~~~~~~f~v~~v 205 (221)
.+.+...+..+++|++.+.
T Consensus 186 ~~~~~~v~~~v~~l~~~gf~iie~ 209 (227)
T d1g8aa_ 186 TKEPEQVFREVERELSEYFEVIER 209 (227)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEE
Confidence 1222223344568987443
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.3e-12 Score=104.01 Aligned_cols=82 Identities=18% Similarity=0.166 Sum_probs=65.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc--
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-- 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~-- 138 (221)
+..++||||||+|.+++.+++. +.+++++|+ +++++.|++|++.|++ .+++.+...+|......
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l-----------~~~~~~~~~~~~~~~~~~~ 129 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----------SDLIKVVKVPQKTLLMDAL 129 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTCSSTTTS
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC-----------CcceeeeeeccHHhhhhhh
Confidence 4569999999999999998865 789999998 6699999999999987 57788877666543211
Q ss_pred -cccCCCccEEEEcccccC
Q 027594 139 -KAVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 139 -~~~~~~fD~Vi~~d~~y~ 156 (221)
.....+||+|++|+|+|.
T Consensus 130 ~~~~~~~fD~ivsNPPY~~ 148 (250)
T d2h00a1 130 KEESEIIYDFCMCNPPFFA 148 (250)
T ss_dssp TTCCSCCBSEEEECCCCC-
T ss_pred hhcccCceeEEEecCcccc
Confidence 123468999999999985
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.44 E-value=3.2e-13 Score=107.92 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=83.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
..++|||||||+|..+..+++. +.+++++|++++++.++++++..+. .+++.+...|..+ ..
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~-----------~~ri~~~~~d~~~-----~~ 144 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL-----------ADRVTVAEGDFFK-----PL 144 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTS-----CC
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCC-----------cceeeeeeeeccc-----cc
Confidence 3468999999999999999987 5679999999999999999988765 4678877744321 12
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+.+||+|+++.++++.++ ...+++.+.+.|+|||+++|...
T Consensus 145 p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~ 187 (256)
T d1qzza2 145 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 187 (256)
T ss_dssp SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence 456999999999988643 46789999999999999998764
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=3.5e-14 Score=111.74 Aligned_cols=103 Identities=18% Similarity=0.197 Sum_probs=76.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+|++|||||||+|..+..+++.+ ++||++|. +.+++.++++..... .++.....++.... ....
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~-~~~~ 118 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVA-PTLP 118 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHG-GGSC
T ss_pred CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc-------------cccccccccccccc-cccc
Confidence 67899999999999999999875 57999998 569999998876543 34555554443321 1234
Q ss_pred CCCccEEEE-----cccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 142 APPFDYIIG-----TDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 142 ~~~fD~Vi~-----~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
..+||.|+. ...+++..+.+.+++.+.++|+|||++.+.
T Consensus 119 ~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 119 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence 578999874 333445556778999999999999998763
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=8.3e-14 Score=111.78 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=90.4
Q ss_pred CCCCCCCeEEEeCCCccHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhcc---------ccCCCCCCC-------
Q 027594 60 PSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRI---------SQMNPGSDL------- 121 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~---------~~~~~~~~~------- 121 (221)
+...+|.+|||||||+|..++..+ +.+.+|+++|+ +.|++.+++++....... ....+....
T Consensus 50 ~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 129 (263)
T d2g72a1 50 TGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ 129 (263)
T ss_dssp TSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred CCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence 467789999999999998876555 55678999998 559999998765422100 000000000
Q ss_pred -CCce-EEEEEEecCCCC---ccccCCCccEEEEcccccCC----cCHHHHHHHHHHhcCCCeEEEEEEEecCh------
Q 027594 122 -LGSI-QAVELDWGNEDH---IKAVAPPFDYIIGTDVVYAE----HLLEPLLQTIFALSGPKTTILLGYEIRST------ 186 (221)
Q Consensus 122 -~~~v-~~~~~dw~~~~~---~~~~~~~fD~Vi~~d~~y~~----~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------ 186 (221)
...+ .+...|...... ......+||+|++.-++.+. +++..+++.+.++|||||.+++....+..
T Consensus 130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~ 209 (263)
T d2g72a1 130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGE 209 (263)
T ss_dssp HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETT
T ss_pred hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCC
Confidence 0001 111112211111 11224579999999888653 35788899999999999999887654331
Q ss_pred -------hHHHHHHHHHh-cCCeEEEec
Q 027594 187 -------SVHEQMLQMWK-SNFNVKLVP 206 (221)
Q Consensus 187 -------~~~~~~~~~~~-~~f~v~~v~ 206 (221)
-..+.+.+.+. .+|++..+.
T Consensus 210 ~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 210 ARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp EEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred cccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 12345555564 589886544
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.42 E-value=5e-13 Score=107.32 Aligned_cols=122 Identities=15% Similarity=0.131 Sum_probs=86.8
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCC
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (221)
+..|.+++.... ......++||+|||+|..++.+++. .++|+++|+ +++++.+++|++.++.
T Consensus 95 TE~lv~~~~~~~-------~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~--------- 158 (271)
T d1nv8a_ 95 TEELVELALELI-------RKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV--------- 158 (271)
T ss_dssp HHHHHHHHHHHH-------HHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC---------
T ss_pred hhhhhhhhhhhh-------ccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC---------
Confidence 556666666542 1123468999999999999998865 468999998 6699999999999986
Q ss_pred CCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc--------------------CHHHHHHHHHHhcCCCeEEEE
Q 027594 120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH--------------------LLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 120 ~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~--------------------~~~~l~~~~~~ll~~~g~~~i 179 (221)
..++.+...+|.+.. .....+||+|++|+|+-..+ -+.-.-+.+.++|+|+|.+++
T Consensus 159 --~~~~~i~~~~~~~~~--~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~ 234 (271)
T d1nv8a_ 159 --SDRFFVRKGEFLEPF--KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM 234 (271)
T ss_dssp --TTSEEEEESSTTGGG--GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred --CceeEEeeccccccc--ccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE
Confidence 456777777775432 22346899999999965211 022222335678999999888
Q ss_pred EEEe
Q 027594 180 GYEI 183 (221)
Q Consensus 180 ~~~~ 183 (221)
-...
T Consensus 235 Eig~ 238 (271)
T d1nv8a_ 235 EIGE 238 (271)
T ss_dssp ECCT
T ss_pred EECH
Confidence 5543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.42 E-value=2.7e-13 Score=103.09 Aligned_cols=111 Identities=16% Similarity=0.134 Sum_probs=81.8
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..+.+||||.||||.+|+.++.+|| +|+++|. ..+++.+++|++..+.. .....+...+.........
T Consensus 42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~----------~~~~~~~~~d~~~~l~~~~ 111 (183)
T d2ifta1 42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----------SEQAEVINQSSLDFLKQPQ 111 (183)
T ss_dssp HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----------TTTEEEECSCHHHHTTSCC
T ss_pred cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc----------ccccccccccccccccccc
Confidence 4678999999999999999999999 5999998 56999999999987641 1234444433222111122
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHH--hcCCCeEEEEEEEec
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFA--LSGPKTTILLGYEIR 184 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~--ll~~~g~~~i~~~~r 184 (221)
...+||+|++.|| |.......++..+.. +|+++|.+++-+..+
T Consensus 112 ~~~~fDlIFlDPP-Y~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~ 156 (183)
T d2ifta1 112 NQPHFDVVFLDPP-FHFNLAEQAISLLCENNWLKPNALIYVETEKD 156 (183)
T ss_dssp SSCCEEEEEECCC-SSSCHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred cCCcccEEEechh-HhhhhHHHHHHHHHHhCCcCCCcEEEEEecCC
Confidence 3457999998666 777778888888876 589999988865543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.41 E-value=1.1e-12 Score=105.29 Aligned_cols=123 Identities=14% Similarity=0.034 Sum_probs=88.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||+|||+|.+++.+|+. +++|+++|. +++++.|++|++..+. .+++.+...|..
T Consensus 100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~-----------~~~v~~~~~d~~--- 165 (266)
T d1o54a_ 100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----------IERVTIKVRDIS--- 165 (266)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----------GGGEEEECCCGG---
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-----------ccCcEEEecccc---
Confidence 4568999999999999999999975 358999998 6799999999998875 345655543321
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEEEe
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV 205 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~~v 205 (221)
.......||.|+. +..+....++.+.++|||||++++..+. .+..++..+.++ .+|...++
T Consensus 166 -~~~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~--~~Qv~~~~~~l~~~gF~~i~~ 227 (266)
T d1o54a_ 166 -EGFDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPT--TNQVQETLKKLQELPFIRIEV 227 (266)
T ss_dssp -GCCSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESS--HHHHHHHHHHHHHSSEEEEEE
T ss_pred -ccccccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCc--ccHHHHHHHHHHHCCceeEEE
Confidence 1223567888874 3456778899999999999998764432 222345555554 47854433
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1.2e-12 Score=105.09 Aligned_cols=96 Identities=11% Similarity=0.080 Sum_probs=73.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.++.+|||+|||+|..+..+++. +.+++++|+ +.+++.++++. .++.+... +...++
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----------------~~~~~~~~---d~~~l~ 142 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------------PQVTFCVA---SSHRLP 142 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------------TTSEEEEC---CTTSCS
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----------------ccccceee---ehhhcc
Confidence 46779999999999999999887 457999998 55888877531 34666663 444455
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecC
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 185 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~ 185 (221)
..+++||+|++.....+ ++.+.++|||||.++++.+...
T Consensus 143 ~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~ 181 (268)
T d1p91a_ 143 FSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPR 181 (268)
T ss_dssp BCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred CCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCc
Confidence 66789999998765543 4678899999999999887543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.40 E-value=1.4e-12 Score=104.29 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=84.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||+|||+|.+++.+|+. | .+|+.+|. +++++.|++|++..... ..+++.+...|..
T Consensus 93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~---------~~~nv~~~~~d~~--- 160 (264)
T d1i9ga_ 93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ---------PPDNWRLVVSDLA--- 160 (264)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS---------CCTTEEEECSCGG---
T ss_pred CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC---------CCceEEEEecccc---
Confidence 4558999999999999999999976 4 47999998 67999999999875421 1357777764433
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHH
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW 196 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~ 196 (221)
.....+..||.|+. | ..+....+..+.++|||||.+++..+.-. . ..+..+.+
T Consensus 161 ~~~~~~~~fDaV~l-d----lp~P~~~l~~~~~~LkpGG~lv~~~P~i~-Q-v~~~~~~l 213 (264)
T d1i9ga_ 161 DSELPDGSVDRAVL-D----MLAPWEVLDAVSRLLVAGGVLMVYVATVT-Q-LSRIVEAL 213 (264)
T ss_dssp GCCCCTTCEEEEEE-E----SSCGGGGHHHHHHHEEEEEEEEEEESSHH-H-HHHHHHHH
T ss_pred cccccCCCcceEEE-e----cCCHHHHHHHHHhccCCCCEEEEEeCccC-h-HHHHHHHH
Confidence 23345789999986 2 34556778899999999999866443322 2 34445555
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.38 E-value=6.8e-12 Score=96.72 Aligned_cols=124 Identities=15% Similarity=0.077 Sum_probs=87.7
Q ss_pred CCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+..|||||||+|...+.+|+.. ..++++|. ..++..+.+++..+++ +++.+...|...... ...
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l------------~Nv~~~~~Da~~l~~-~~~ 96 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------------QNVKLLNIDADTLTD-VFE 96 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------------SSEEEECCCGGGHHH-HCC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc------------cCchhcccchhhhhc-ccC
Confidence 4589999999999999999875 57999998 5699999999998875 578888755432211 234
Q ss_pred CCCccEEEEcccccCCcC--------HHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHh-cCCeEE
Q 027594 142 APPFDYIIGTDVVYAEHL--------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK 203 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--------~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~-~~f~v~ 203 (221)
...+|.|+..-+..++.. .+.+++.+.++|+|||.++++. ......+...+.+. ..+...
T Consensus 97 ~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T--D~~~y~~~~~~~~~~~~~~~~ 165 (204)
T d2fcaa1 97 PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT--DNRGLFEYSLKSFSEYGLLLT 165 (204)
T ss_dssp TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE--SCHHHHHHHHHHHHHHTCEEE
T ss_pred chhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE--CChHHHHHHHHHHHHCCCccc
Confidence 678998877655444332 2579999999999999998864 23333344444443 244433
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.38 E-value=1.4e-12 Score=101.89 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=73.2
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...+|.+|||+|||+|..+..+|+++.+|+++|. +++++.+++|.... .++.+...|-.. ..
T Consensus 67 ~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~--------------~nv~~~~~d~~~---g~ 129 (224)
T d1vbfa_ 67 DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY--------------NNIKLILGDGTL---GY 129 (224)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC--------------SSEEEEESCGGG---CC
T ss_pred hhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc--------------cccccccCchhh---cc
Confidence 4558889999999999999999999999999997 66889998876542 467777644222 12
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
....+||.|+.+..+.+. ...+.+.|+|||++++..
T Consensus 130 ~~~~pfD~Iiv~~a~~~i------p~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 130 EEEKPYDRVVVWATAPTL------LCKPYEQLKEGGIMILPI 165 (224)
T ss_dssp GGGCCEEEEEESSBBSSC------CHHHHHTEEEEEEEEEEE
T ss_pred hhhhhHHHHHhhcchhhh------hHHHHHhcCCCCEEEEEE
Confidence 235689999987665432 244567899999987743
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=2.3e-12 Score=100.91 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=75.8
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||+|||+|..+..+|++ ..+|+++|. +++++.+++|++..+.... ...++.+... +..
T Consensus 73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~-------~~~~~~~~~g---D~~ 142 (224)
T d1i1na_ 73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL-------SSGRVQLVVG---DGR 142 (224)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH-------HTSSEEEEES---CGG
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccc-------cccceEEEEe---ecc
Confidence 3457899999999999999988875 347999997 6799999999987553110 0245666653 333
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.......+||+|+.+..+.+.. ..+.+.|+|||++++..
T Consensus 143 ~~~~~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 143 MGYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp GCCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred cccchhhhhhhhhhhcchhhcC------HHHHhhcCCCcEEEEEE
Confidence 2233457899999987765532 34667899999988754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.32 E-value=4.9e-12 Score=98.22 Aligned_cols=100 Identities=18% Similarity=0.222 Sum_probs=77.9
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
...++.+|||||||||..+..+|++ |.+|+++|. +++++.+++|+...+. .++.+...|....
T Consensus 75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~------------~nv~~~~gd~~~g--- 139 (215)
T d1jg1a_ 75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------------KNVHVILGDGSKG--- 139 (215)
T ss_dssp TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGC---
T ss_pred ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC------------ceeEEEECccccC---
Confidence 4568899999999999999999976 778999997 6799999999999875 6888888554332
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.....+||.|+....+.... ..+...|+|||++++..
T Consensus 140 ~~~~~pfD~Iiv~~a~~~ip------~~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 140 FPPKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPV 176 (215)
T ss_dssp CGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEE
T ss_pred CcccCcceeEEeecccccCC------HHHHHhcCCCCEEEEEE
Confidence 23467999999886665432 23456789999987644
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.29 E-value=9.7e-11 Score=90.11 Aligned_cols=104 Identities=18% Similarity=0.046 Sum_probs=79.8
Q ss_pred CCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+..|||||||+|-..+.+|+.. ..++++|+ +.++..+.+++..+++ +++.+...|...... ...
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l------------~Ni~~~~~da~~l~~-~~~ 98 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------------PNIKLLWVDGSDLTD-YFE 98 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------------SSEEEEECCSSCGGG-TSC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc------------ccceeeecCHHHHhh-hcc
Confidence 4579999999999999999874 56999998 5589999998888875 678888866544322 234
Q ss_pred CCCccEEEEcccccCCc--------CHHHHHHHHHHhcCCCeEEEEEE
Q 027594 142 APPFDYIIGTDVVYAEH--------LLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~--------~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..++|.|+..-+-.++. ..+.+++.+.++|+|||.++++.
T Consensus 99 ~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 99 DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp TTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 67899997764433322 13789999999999999998865
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=4.4e-11 Score=98.19 Aligned_cols=114 Identities=15% Similarity=0.114 Sum_probs=76.9
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+|||+|||+|.+++.+|+. | .+|++.|. +++++.|++|++..+...... ......+++.+...|..+..
T Consensus 95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~-~~~~~~~nv~~~~~di~~~~ 173 (324)
T d2b25a1 95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS-HVEEWPDNVDFIHKDISGAT 173 (324)
T ss_dssp TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTT-CSSCCCCCEEEEESCTTCCC
T ss_pred CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhh-hhhccccceeEEecchhhcc
Confidence 4558999999999999999999975 4 47999998 679999999999765421110 00112467888775544332
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. ......||.|+. |+ .+....+..+.++|||||++++..
T Consensus 174 ~-~~~~~~fD~V~L-D~----p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 174 E-DIKSLTFDAVAL-DM----LNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp --------EEEEEE-CS----SSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred c-ccCCCCcceEee-cC----cCHHHHHHHHHHhccCCCEEEEEe
Confidence 1 123567999986 43 223356788899999999977643
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=1.8e-10 Score=95.73 Aligned_cols=144 Identities=12% Similarity=0.117 Sum_probs=100.5
Q ss_pred hHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCC
Q 027594 41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS 119 (221)
Q Consensus 41 ~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~ 119 (221)
.+..|.+++.+.+ ...++.+||||-||+|.+|+.+|+.+.+|+++|. +++++.|++|++.|++
T Consensus 196 ~~e~l~~~v~~~~-------~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i--------- 259 (358)
T d1uwva2 196 VNQKMVARALEWL-------DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL--------- 259 (358)
T ss_dssp HHHHHHHHHHHHH-------TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC---------
T ss_pred hhhHHHHHHHHhh-------ccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhccc---------
Confidence 4556666665542 2346779999999999999999999999999997 6799999999999996
Q ss_pred CCCCceEEEEEEecCCCC-ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhc
Q 027594 120 DLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS 198 (221)
Q Consensus 120 ~~~~~v~~~~~dw~~~~~-~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~ 198 (221)
.++.+...+-.+... ......+||+||..++=-. ....+..+.++ +|.-.+|++.... ...+.+....+.
T Consensus 260 ---~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G---~~~~~~~l~~~-~~~~ivYVSCnp~--TlaRDl~~l~~~ 330 (358)
T d1uwva2 260 ---QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAG---AAGVMQQIIKL-EPIRIVYVSCNPA--TLARDSEALLKA 330 (358)
T ss_dssp ---CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTC---CHHHHHHHHHH-CCSEEEEEESCHH--HHHHHHHHHHHT
T ss_pred ---ccceeeecchhhhhhhhhhhhccCceEEeCCCCcc---HHHHHHHHHHc-CCCEEEEEeCCHH--HHHHHHHHHHHC
Confidence 678887754433221 2223567999998777433 23466666654 6778888865322 122444444577
Q ss_pred CCeEEEecCCC
Q 027594 199 NFNVKLVPKAK 209 (221)
Q Consensus 199 ~f~v~~v~~~~ 209 (221)
+|+++.+.--+
T Consensus 331 gy~l~~i~~~D 341 (358)
T d1uwva2 331 GYTIARLAMLD 341 (358)
T ss_dssp TCEEEEEEEEC
T ss_pred CCeEeEEEEEe
Confidence 89998775444
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.19 E-value=1.1e-10 Score=91.10 Aligned_cols=106 Identities=14% Similarity=0.174 Sum_probs=74.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh----C----CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEE
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL----G----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD 131 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~----g----a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~d 131 (221)
...++.+|||+|||||..+..++++ | .+|+++|. +++++.+++|+..+..... ...++.+...|
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~-------~~~nv~~~~~d 149 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML-------DSGQLLIVEGD 149 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH-------HHTSEEEEESC
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhc-------CccEEEEEecc
Confidence 3457899999999999999888875 2 47999997 6699999999876543100 02467777744
Q ss_pred ecCCCCccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 132 WGNEDHIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 132 w~~~~~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
- ........+||.|+....+.... ..+.+.|+|||++++...
T Consensus 150 ~---~~~~~~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~pvg 191 (223)
T d1r18a_ 150 G---RKGYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 191 (223)
T ss_dssp G---GGCCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred c---ccccccccceeeEEEEeechhch------HHHHHhcCCCcEEEEEEe
Confidence 3 22223356899999887665432 345678999999877543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=9.2e-11 Score=96.61 Aligned_cols=113 Identities=11% Similarity=0.019 Sum_probs=77.9
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...++.+|||||||+|.+.+.+|+. ++ +++++|+ +.+++.+++++........... ....++++.+.|..+
T Consensus 148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g---~~~~~i~~~~gd~~~--- 221 (328)
T d1nw3a_ 148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG---KKHAEYTLERGDFLS--- 221 (328)
T ss_dssp CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT---CCCCCEEEEECCTTS---
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc---ccCCceEEEECcccc---
Confidence 4557889999999999999988865 54 6999998 5699999888776432111000 013568888754432
Q ss_pred ccccC--CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 IKAVA--PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 ~~~~~--~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.+... ...|+|+++... +...+...+..+.+.|||||++++.
T Consensus 222 ~~~~~~~~~advi~~~~~~-f~~~~~~~l~e~~r~LKpGg~iv~~ 265 (328)
T d1nw3a_ 222 EEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSS 265 (328)
T ss_dssp HHHHHHHHHCSEEEECCTT-TCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred cccccccCcceEEEEccee-cchHHHHHHHHHHHhCCCCcEEEEe
Confidence 22111 135788877654 4566778888999999999998763
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.12 E-value=1.2e-10 Score=98.20 Aligned_cols=113 Identities=18% Similarity=0.151 Sum_probs=75.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...+|.+|||||||+|.+.+.+|.. | ++|+++|+ +.+++.|+++++..+........ ....+ .+.......
T Consensus 213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~---~~~~~---~~~~~~~f~ 286 (406)
T d1u2za_ 213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM---RLNNV---EFSLKKSFV 286 (406)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB---CCCCE---EEEESSCST
T ss_pred CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcc---ccccc---eeeeeechh
Confidence 4568899999999999999988864 5 47999998 56999999998876532111100 01112 222222111
Q ss_pred -c---cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 138 -I---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 138 -~---~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. ...-..+|+|+.+.. .+...+...+..+.+.|||||++++.
T Consensus 287 ~~~~~d~~~~~adVV~inn~-~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 287 DNNRVAELIPQCDVILVNNF-LFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp TCHHHHHHGGGCSEEEECCT-TCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred hccccccccccceEEEEecc-cCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 1 111235788887754 45567888899999999999998764
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=8.3e-10 Score=85.66 Aligned_cols=130 Identities=13% Similarity=0.103 Sum_probs=92.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
+.++|||||||+|.-++.+|.. +.+|+.+|. ++..+.+++|++..+. .+++++...+..+... .
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-----------~~~i~~~~Gda~e~l~~~ 127 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----------EHKIDLRLKPALETLDEL 127 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-----------cceEEEEEeehhhcchhh
Confidence 5689999999999999999864 568999997 6699999999999886 5678887744322211 0
Q ss_pred --cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh------------hHHHHHHHHHhc--CCeE
Q 027594 139 --KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNV 202 (221)
Q Consensus 139 --~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~------------~~~~~~~~~~~~--~f~v 202 (221)
.....+||+|+.. ...+.....+..+.++|+|||.+++-...... ...+.|.+.+++ .|..
T Consensus 128 ~~~~~~~~fD~ifiD---~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~ 204 (219)
T d2avda1 128 LAAGEAGTFDVAVVD---ADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYI 204 (219)
T ss_dssp HHTTCTTCEEEEEEC---SCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEE
T ss_pred hhhcccCCccEEEEe---CCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 1225689999986 45567788888899999999998774332211 124566666654 4666
Q ss_pred EEecC
Q 027594 203 KLVPK 207 (221)
Q Consensus 203 ~~v~~ 207 (221)
..++-
T Consensus 205 ~llPi 209 (219)
T d2avda1 205 SLLPL 209 (219)
T ss_dssp EEECS
T ss_pred EEeec
Confidence 55543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.02 E-value=4.1e-10 Score=87.18 Aligned_cols=102 Identities=20% Similarity=0.216 Sum_probs=73.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
+.++|||+|||+|.-++.+|+. +.+|+++|. +++++.+++|++..++ .++|++...+..+... +
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----------~~~i~l~~Gd~~e~l~~l 124 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----------QDKVTILNGASQDLIPQL 124 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHGGGH
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----------Cccceeeeccccccccch
Confidence 5579999999999999999864 678999998 6699999999999886 4678888855543211 1
Q ss_pred --cccCCCccEEEEcccccCCcCHHH--HHHHHHHhcCCCeEEEE
Q 027594 139 --KAVAPPFDYIIGTDVVYAEHLLEP--LLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 --~~~~~~fD~Vi~~d~~y~~~~~~~--l~~~~~~ll~~~g~~~i 179 (221)
.....+||+|+.. ...+.... .+....++|+|||.+++
T Consensus 125 ~~~~~~~~~D~ifiD---~~~~~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 125 KKKYDVDTLDMVFLD---HWKDRYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp HHHSCCCCEEEEEEC---SCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hhcccccccceeeec---ccccccccHHHHHHHhCccCCCcEEEE
Confidence 1224679999875 22233323 23444567999998655
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.93 E-value=3.9e-09 Score=82.18 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=80.0
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC-c
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I 138 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~-~ 138 (221)
+.++|||||+++|.-++.+|.. +++|+.+|. ++..+.+++|++..+. .+++++...+..+... +
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----------~~~i~~~~g~a~~~L~~l 127 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----------DHKIDFREGPALPVLDEM 127 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----------ccceeeeehHHHHHHHHH
Confidence 5679999999999999999853 568999997 6699999999999886 4678888754433211 1
Q ss_pred ---cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 139 ---KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 139 ---~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
....++||+|+.. .+.......+..+.++|+|||.+++
T Consensus 128 ~~~~~~~~~fD~iFiD---a~k~~y~~~~e~~~~ll~~gGiii~ 168 (227)
T d1susa1 128 IKDEKNHGSYDFIFVD---ADKDNYLNYHKRLIDLVKVGGVIGY 168 (227)
T ss_dssp HHCGGGTTCBSEEEEC---SCSTTHHHHHHHHHHHBCTTCCEEE
T ss_pred HhccccCCceeEEEec---cchhhhHHHHHHHHhhcCCCcEEEE
Confidence 1124689999985 3556788888999999999999876
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.89 E-value=4.3e-09 Score=82.32 Aligned_cols=124 Identities=13% Similarity=0.088 Sum_probs=80.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
.+.+++|+|||.|++|+.+|-. ..+++++|. ..-+..++.-++.-++ .++.+.+...........
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L------------~n~~i~~~R~E~~~~~~~ 137 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------------ENTTFCHDRAETFGQRKD 137 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEESCHHHHTTCTT
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC------------CCcEEEeehhhhcccccc
Confidence 4579999999999999999975 457999996 4455555555555554 456666533322221222
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecCh-hHHHHHHHHHh-cCCeEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQMWK-SNFNVKL 204 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~-~~~~~~~~~~~-~~f~v~~ 204 (221)
...+||+|++- -...+..++..+..+++++|.+++ ...+.. +..+.....++ .++.+..
T Consensus 138 ~~~~~D~v~sR----Ava~l~~ll~~~~~~l~~~g~~i~-~KG~~~~~El~~a~~~~~~~~~~~~~ 198 (239)
T d1xdza_ 138 VRESYDIVTAR----AVARLSVLSELCLPLVKKNGLFVA-LKAASAEEELNAGKKAITTLGGELEN 198 (239)
T ss_dssp TTTCEEEEEEE----CCSCHHHHHHHHGGGEEEEEEEEE-EECC-CHHHHHHHHHHHHHTTEEEEE
T ss_pred ccccceEEEEh----hhhCHHHHHHHHhhhcccCCEEEE-ECCCChHHHHHHHHHHHHHcCCEEEE
Confidence 35689999985 347899999999999999998765 444432 22333333343 3555443
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=1.3e-08 Score=78.06 Aligned_cols=117 Identities=17% Similarity=0.325 Sum_probs=81.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
++++|+|+|||.|++|+.+|-.. .+++++|. ..-+..++.-+...++ +++++.+.. .+...
T Consensus 65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L------------~nv~v~~~R---~E~~~- 128 (207)
T d1jsxa_ 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------------ENIEPVQSR---VEEFP- 128 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------------SSEEEEECC---TTTSC-
T ss_pred cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC------------cceeeeccc---hhhhc-
Confidence 45799999999999999999764 57999996 4566666666666554 467877733 33322
Q ss_pred cCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEE
Q 027594 141 VAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL 204 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~ 204 (221)
...+||+|++-. ...+..++..+..+++++|.+++ ....... +. .+.++.+|.+..
T Consensus 129 ~~~~fD~V~sRA----~~~~~~ll~~~~~~l~~~g~~~~-~KG~~~~--eE-l~~~~~~~~~~~ 184 (207)
T d1jsxa_ 129 SEPPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYA-LKGQMPE--DE-IALLPEEYQVES 184 (207)
T ss_dssp CCSCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEE-EESSCCH--HH-HHTSCTTEEEEE
T ss_pred cccccceehhhh----hcCHHHHHHHHHHhcCCCcEEEE-ECCCCHH--HH-HHhhhcCCEEEE
Confidence 246899998743 36788999999999999999765 4433321 22 344455666543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.84 E-value=7.1e-09 Score=81.59 Aligned_cols=96 Identities=18% Similarity=0.061 Sum_probs=73.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
...+|||||||+|..++.+++.. .++|..|.+++++. .. ..+++++...|.-+.
T Consensus 81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~-----------~~~ri~~~~gd~~~~------ 136 (244)
T d1fp1d2 81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN-------AP-----------PLSGIEHVGGDMFAS------ 136 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT-------CC-----------CCTTEEEEECCTTTC------
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhc-------cC-----------CCCCeEEecCCcccc------
Confidence 34689999999999999999874 57899999876431 11 136788888655321
Q ss_pred CCCccEEEEcccccCCcC--HHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 142 APPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
....|+++.+.++|+.++ ...+++.+.+.|+|||+++|+...
T Consensus 137 ~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 137 VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp CCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 235699999999998654 667899999999999999998764
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.81 E-value=1.7e-08 Score=82.58 Aligned_cols=125 Identities=12% Similarity=0.043 Sum_probs=83.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh----C---CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL----G---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~----g---a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
++.+|||.+||+|.+.+.+... + .+++++|+ +.++..++.|+..++. .......++..
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~- 182 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------------KMTLLHQDGLA- 182 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------------CCEEEESCTTS-
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-------------hhhhhcccccc-
Confidence 5678999999999888877632 2 25899998 5699999999887763 33444433221
Q ss_pred CCccccCCCccEEEEcccccCCc------------------CHHHHHHHHHHhcCCCeEEEEEEEecC--hhHHHHHHHH
Q 027594 136 DHIKAVAPPFDYIIGTDVVYAEH------------------LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQM 195 (221)
Q Consensus 136 ~~~~~~~~~fD~Vi~~d~~y~~~------------------~~~~l~~~~~~ll~~~g~~~i~~~~r~--~~~~~~~~~~ 195 (221)
.....+||+|++++|+-... ....++..+.++|+|+|++.+..+..- ......+.+.
T Consensus 183 ---~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~ 259 (328)
T d2f8la1 183 ---NLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKF 259 (328)
T ss_dssp ---CCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHH
T ss_pred ---ccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHH
Confidence 12356899999999963211 123368888899999999888776432 1123445555
Q ss_pred HhcCCeEEEe
Q 027594 196 WKSNFNVKLV 205 (221)
Q Consensus 196 ~~~~f~v~~v 205 (221)
+-+.+.++.+
T Consensus 260 L~~~~~i~~i 269 (328)
T d2f8la1 260 IKKNGHIEGI 269 (328)
T ss_dssp HHHHEEEEEE
T ss_pred HHhCCcEEEE
Confidence 5555555544
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.65 E-value=2.9e-08 Score=78.02 Aligned_cols=94 Identities=13% Similarity=0.059 Sum_probs=72.1
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
.++|||+|||+|..++.+++. +.+++..|.+++++.+. . .+++++...|.-+. .
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~-------~-----------~~rv~~~~gD~f~~------~ 136 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLS-------G-----------SNNLTYVGGDMFTS------I 136 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCC-------C-----------BTTEEEEECCTTTC------C
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCc-------c-----------cCceEEEecCcccC------C
Confidence 368999999999999999887 55899999987654221 1 36789888554321 2
Q ss_pred CCccEEEEcccccCCcC--HHHHHHHHHHhcCCC---eEEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEHL--LEPLLQTIFALSGPK---TTILLGYE 182 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~--~~~l~~~~~~ll~~~---g~~~i~~~ 182 (221)
..+|+++...++++.++ ...+++.+.+.|+|| |+++|...
T Consensus 137 p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~ 181 (244)
T d1fp2a2 137 PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 181 (244)
T ss_dssp CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence 36899999999998654 457899999999998 77777654
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.59 E-value=3.8e-08 Score=74.52 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
..++..+||++||+|-.+..++.. +.+|+++|. ++|++.+++++...+ .++.+.+.+..+....
T Consensus 21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-------------~r~~~~~~~f~~~~~~ 87 (192)
T d1m6ya2 21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------------DRVSLFKVSYREADFL 87 (192)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------------TTEEEEECCGGGHHHH
T ss_pred CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-------------ccccchhHHHhhHHHH
Confidence 347789999999999998888765 568999998 679999999887653 4677777544332211
Q ss_pred --cccCCCccEEEEcccc---------cCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 139 --KAVAPPFDYIIGTDVV---------YAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 139 --~~~~~~fD~Vi~~d~~---------y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.....+||.|+..-.+ ...+.....+....++|+|||++.+..
T Consensus 88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~ 141 (192)
T d1m6ya2 88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS 141 (192)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence 1224689999864221 123446677788888899999987644
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.58 E-value=6.4e-08 Score=75.91 Aligned_cols=94 Identities=13% Similarity=0.043 Sum_probs=70.3
Q ss_pred CCeEEEeCCCccHHHHHHHHh--CCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
..+|||||||+|..++.+++. +.+++..|.+++++.++ ..+++.+...|+.+. .
T Consensus 82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~------------------~~~r~~~~~~d~~~~------~ 137 (243)
T d1kyza2 82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP------------------SYPGVEHVGGDMFVS------I 137 (243)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCC------------------CCTTEEEEECCTTTC------C
T ss_pred CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcc------------------cCCceEEeccccccc------C
Confidence 468999999999999999987 45799999987543211 135688887665332 1
Q ss_pred CCccEEEEcccccCCc--CHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEH--LLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+..|+++...++++.+ ....+++.+.+.|+|||+++|...
T Consensus 138 P~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~ 179 (243)
T d1kyza2 138 PKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC 179 (243)
T ss_dssp CCCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred CCcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 2357777788887754 577789999999999999998764
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.55 E-value=4.8e-07 Score=70.41 Aligned_cols=78 Identities=12% Similarity=0.006 Sum_probs=55.6
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
...++.+|||+|||+|.++..++..+++|+++|. +.+++.++++... .+++++...|..+.+.
T Consensus 18 ~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~--------------~~n~~i~~~D~l~~~~-- 81 (235)
T d1qama_ 18 RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--------------HDNFQVLNKDILQFKF-- 81 (235)
T ss_dssp CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--------------CCSEEEECCCGGGCCC--
T ss_pred CCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc--------------ccchhhhhhhhhhccc--
Confidence 3457889999999999999999999999999998 4588877765432 2578888765544321
Q ss_pred ccCCCccEEEEccccc
Q 027594 140 AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y 155 (221)
.......|++|=|++
T Consensus 82 -~~~~~~~vv~NLPYn 96 (235)
T d1qama_ 82 -PKNQSYKIFGNIPYN 96 (235)
T ss_dssp -CSSCCCEEEEECCGG
T ss_pred -cccccceeeeeehhh
Confidence 222334566665543
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.55 E-value=1.8e-07 Score=75.97 Aligned_cols=129 Identities=16% Similarity=0.077 Sum_probs=83.9
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++||.||.|.|.....+++.. .+|+++|+ +++++.+++.+....... ...+++++...|+.... ..
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~-------~~d~rv~i~~~Da~~~l--~~ 147 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGA-------FDDPRAVLVIDDARAYL--ER 147 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTG-------GGCTTEEEEESCHHHHH--HH
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCc-------cCCCceEEEEchHHHHh--hh
Confidence 45799999999998888887653 47999998 669999998765422100 01357888876655432 23
Q ss_pred cCCCccEEEEc--ccccCCc-----CHHHHHHHHHHhcCCCeEEEEEEEe---cChhHHHHHHHHHhcCCe
Q 027594 141 VAPPFDYIIGT--DVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEI---RSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 141 ~~~~fD~Vi~~--d~~y~~~-----~~~~l~~~~~~ll~~~g~~~i~~~~---r~~~~~~~~~~~~~~~f~ 201 (221)
...+||+|+.. |+..... .-..+++.+++.|+|+|++++-... ..........+.+++.|.
T Consensus 148 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~ 218 (312)
T d1uira_ 148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR 218 (312)
T ss_dssp CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCS
T ss_pred cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCc
Confidence 35689999953 3333211 1257889999999999987763322 222334455566666663
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.48 E-value=1.3e-07 Score=78.55 Aligned_cols=113 Identities=18% Similarity=0.092 Sum_probs=76.3
Q ss_pred CCCeEEEeCCCccHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCC---CCCCCCceEEEEEEecCCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNP---GSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~---~~~~~~~v~~~~~dw~~~~~ 137 (221)
++++|||..||||+-|+.+|+ .|+ +|++.|. +++++.+++|++.|+........ .......+.+...|+...
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~-- 122 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL-- 122 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH--
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh--
Confidence 568999999999999997765 565 6999998 66999999999999752100000 000012233444333211
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.......||+|... + | ....++++...+.++.||.+.++..
T Consensus 123 ~~~~~~~fDvIDiD-P-f--Gs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 123 MAERHRYFHFIDLD-P-F--GSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HHHSTTCEEEEEEC-C-S--SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hHhhcCcCCcccCC-C-C--CCcHHHHHHHHHHhccCCEEEEEec
Confidence 11235679999875 4 3 3446899999999999999988764
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.3e-06 Score=69.56 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=60.7
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||+|+|+|.++..+++.+++|++++. +.+++.+++....+.. .+++++...|+...+
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~-----------~~~~~~i~~D~l~~~---- 83 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV-----------ASKLQVLVGDVLKTD---- 83 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEESCTTTSC----
T ss_pred CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhcc-----------ccchhhhHHHHhhhh----
Confidence 446789999999999999999999999999998 4588888887765432 357888887665442
Q ss_pred cCCCccEEEEcccccC
Q 027594 141 VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~ 156 (221)
...++.|++|-|+|-
T Consensus 84 -~~~~~~vV~NLPY~I 98 (278)
T d1zq9a1 84 -LPFFDTCVANLPYQI 98 (278)
T ss_dssp -CCCCSEEEEECCGGG
T ss_pred -hhhhhhhhcchHHHH
Confidence 235678888877554
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.36 E-value=1e-07 Score=74.75 Aligned_cols=78 Identities=14% Similarity=0.070 Sum_probs=55.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++.+|||||||+|.++..+++.+.+|+++|.+ .+++.++++... .+++++...|..+.+ .
T Consensus 27 ~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~--------------~~n~~ii~~D~l~~~---~ 89 (245)
T d1yuba_ 27 LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--------------NTRVTLIHQDILQFQ---F 89 (245)
T ss_dssp CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--------------CSEEEECCSCCTTTT---C
T ss_pred CCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh--------------ccchhhhhhhhhccc---c
Confidence 3467899999999999999999999999999984 466665543321 246777775554432 3
Q ss_pred cCCCccEEEEcccccC
Q 027594 141 VAPPFDYIIGTDVVYA 156 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~ 156 (221)
....++.|++|-++|-
T Consensus 90 ~~~~~~~vv~NLPY~I 105 (245)
T d1yuba_ 90 PNKQRYKIVGNIPYHL 105 (245)
T ss_dssp CCSSEEEEEEECCSSS
T ss_pred ccceeeeEeeeeehhh
Confidence 3456677787766443
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.30 E-value=4.1e-07 Score=68.68 Aligned_cols=117 Identities=20% Similarity=0.218 Sum_probs=67.5
Q ss_pred CCCeEEEeCCCccH----HHHHHHHh----C--CEEEEecc-hhhHHHHHHHHHHhhhcc--------ccCCCCCC----
Q 027594 64 KGKRVIELGAGCGV----AGFGMALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSRI--------SQMNPGSD---- 120 (221)
Q Consensus 64 ~~~~vLelGcG~G~----~~l~~a~~----g--a~v~~~D~-~~~l~~~~~n~~~n~~~~--------~~~~~~~~---- 120 (221)
+..+|++.|||||- +++.+... + .+|++||+ +.+++.|++.+-...... ..+.+...
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 44699999999995 33333322 1 26999998 458888875432111000 00000000
Q ss_pred -------CCCceEEEEEEecCCCCccccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 121 -------LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 121 -------~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
....+.+...+-. .......++||+|++..++.. .+....+++.+.+.|+|||.+++...
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~s 172 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLL--EKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS 172 (193)
T ss_dssp EEEECHHHHTTEEEEECCTT--CSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred eeehHHHHHHHHHHhhhhcc--ccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 0011222221111 111123568999999988654 45567899999999999999888543
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.24 E-value=1.1e-06 Score=67.12 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=67.8
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh---CCEEEEecchh-hHHHHHHHHHHhhhccccCCCCC
Q 027594 44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGS 119 (221)
Q Consensus 44 ~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~ 119 (221)
-++++|...+ ...++.+|||.|||+|.+...+... ..++++.|+.+ ++..++
T Consensus 6 ~i~~~m~~l~-------~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~----------------- 61 (223)
T d2ih2a1 6 EVVDFMVSLA-------EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP----------------- 61 (223)
T ss_dssp HHHHHHHHHC-------CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT-----------------
T ss_pred HHHHHHHHhc-------CCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc-----------------
Confidence 3556666553 3346789999999999877666543 34699999843 332211
Q ss_pred CCCCceEEEEEEecCCCCccccCCCccEEEEcccccCC-----------------------------cCHHHHHHHHHHh
Q 027594 120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----------------------------HLLEPLLQTIFAL 170 (221)
Q Consensus 120 ~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~-----------------------------~~~~~l~~~~~~l 170 (221)
.......++.... ....||+|++++++-.. .....++....++
T Consensus 62 ----~~~~~~~~~~~~~----~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~ 133 (223)
T d2ih2a1 62 ----WAEGILADFLLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRL 133 (223)
T ss_dssp ----TEEEEESCGGGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHH
T ss_pred ----cceeeeeehhccc----cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHh
Confidence 2233443333222 24689999999885311 0123456677788
Q ss_pred cCCCeEEEEEEEe
Q 027594 171 SGPKTTILLGYEI 183 (221)
Q Consensus 171 l~~~g~~~i~~~~ 183 (221)
|+++|++.+..+.
T Consensus 134 lk~~G~~~~I~p~ 146 (223)
T d2ih2a1 134 LKPGGVLVFVVPA 146 (223)
T ss_dssp EEEEEEEEEEEEG
T ss_pred cccCCceEEEEee
Confidence 9999998877664
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.24 E-value=1.5e-06 Score=69.08 Aligned_cols=131 Identities=17% Similarity=0.063 Sum_probs=79.7
Q ss_pred CCCeEEEeCCCccHHHHHHHHhCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+.++||-||+|.|.....+.+... +|+++|+ +++++.+++-...+........ ....+++++...|..... ..
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~--~~~d~rv~i~~~Da~~~l---~~ 146 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAML--NGKHEKAKLTIGDGFEFI---KN 146 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHH--TTCCSSEEEEESCHHHHH---HH
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhh--ccCCCCceEEEChHHHHH---hc
Confidence 457999999999988888776654 6999998 6699999875432211000000 011357887775433221 12
Q ss_pred CCCccEEEEcccccCCcC-----HHHHHHHHHHhcCCCeEEEEEEEecC--hhHHHHHHHHHhcCC
Q 027594 142 APPFDYIIGTDVVYAEHL-----LEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKSNF 200 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~-----~~~l~~~~~~ll~~~g~~~i~~~~r~--~~~~~~~~~~~~~~f 200 (221)
.++||+||. |+...... -..+.+.+++.|+|+|.+++-..... ........+.+++.|
T Consensus 147 ~~~yDvIi~-D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F 211 (276)
T d1mjfa_ 147 NRGFDVIIA-DSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVF 211 (276)
T ss_dssp CCCEEEEEE-ECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHC
T ss_pred cCCCCEEEE-eCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhC
Confidence 578999996 44332211 25689999999999999766333222 223344445555555
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.14 E-value=3.6e-06 Score=67.42 Aligned_cols=127 Identities=13% Similarity=0.064 Sum_probs=81.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++||-||.|.|...-.+++.. .+|+++|+ +++++.+++-...+.... ..+++++...|.... +..
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~--------~d~rv~v~~~Da~~~--l~~ 158 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF--------DDPRAEIVIANGAEY--VRK 158 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--GGG
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccc--------cCCCcEEEhhhHHHH--Hhc
Confidence 35799999999998888887753 57999998 669999998766543211 135788777554333 223
Q ss_pred cCCCccEEEEc--ccccCCc---CHHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHhcCC
Q 027594 141 VAPPFDYIIGT--DVVYAEH---LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF 200 (221)
Q Consensus 141 ~~~~fD~Vi~~--d~~y~~~---~~~~l~~~~~~ll~~~g~~~i~~~~--r~~~~~~~~~~~~~~~f 200 (221)
..++||+|+.. |+..... .-..+.+.+.+.|+|+|.+.+-... ..........+.+++.|
T Consensus 159 ~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF 225 (295)
T d1inla_ 159 FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVF 225 (295)
T ss_dssp CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhc
Confidence 45789999963 1211111 1367899999999999997653222 12223444455555555
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.12 E-value=3.3e-05 Score=62.24 Aligned_cols=117 Identities=17% Similarity=0.077 Sum_probs=75.1
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+|.+|||+.||.|.=++.++.. ...+++.|. +.-+..+++|+.+.+. .++.... .+....
T Consensus 115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------------~~i~~~~---~d~~~~ 179 (313)
T d1ixka_ 115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------------LNVILFH---SSSLHI 179 (313)
T ss_dssp CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------------CSEEEES---SCGGGG
T ss_pred CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------------hcccccc---cccccc
Confidence 37889999999999877777654 346999997 5588888899888775 3444332 222223
Q ss_pred cccCCCccEEEEcccccC---------------Cc-------CHHHHHHHHHHhcCCCeEEEEEEEecCh----hHHHHH
Q 027594 139 KAVAPPFDYIIGTDVVYA---------------EH-------LLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQM 192 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~---------------~~-------~~~~l~~~~~~ll~~~g~~~i~~~~r~~----~~~~~~ 192 (221)
......||.|+...+--. .. ....++....++++|||+++.+...-.+ .+.+.|
T Consensus 180 ~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~ 259 (313)
T d1ixka_ 180 GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWA 259 (313)
T ss_dssp GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred ccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHH
Confidence 334678999988443211 11 1233566667778999987766544333 344455
Q ss_pred HH
Q 027594 193 LQ 194 (221)
Q Consensus 193 ~~ 194 (221)
++
T Consensus 260 L~ 261 (313)
T d1ixka_ 260 LD 261 (313)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.11 E-value=7.6e-06 Score=68.80 Aligned_cols=128 Identities=14% Similarity=0.046 Sum_probs=83.2
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---------------CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEE
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA 127 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---------------ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~ 127 (221)
.+.+|+|-.||+|.+-+.+.+. ...+.+.|. +.+...++.|+..++.. ......
T Consensus 162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~----------~~~~~i 231 (425)
T d2okca1 162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----------TDRSPI 231 (425)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----------SSCCSE
T ss_pred ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc----------ccccee
Confidence 5679999999999888777643 124889998 56999999998887642 122333
Q ss_pred EEEEecCCCCccccCCCccEEEEcccccCC-----------------cCHHHHHHHHHHhcCCCeEEEEEEEecC---hh
Q 027594 128 VELDWGNEDHIKAVAPPFDYIIGTDVVYAE-----------------HLLEPLLQTIFALSGPKTTILLGYEIRS---TS 187 (221)
Q Consensus 128 ~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~-----------------~~~~~l~~~~~~ll~~~g~~~i~~~~r~---~~ 187 (221)
...|. .. .....+||+|++|+|+-.. .....++..+.++|++||++.+..+... ..
T Consensus 232 ~~~d~---l~-~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~ 307 (425)
T d2okca1 232 VCEDS---LE-KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAG 307 (425)
T ss_dssp EECCT---TT-SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCST
T ss_pred ecCch---hh-hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhh
Confidence 33222 21 1235689999999997321 1123488888899999999888777422 22
Q ss_pred HHHHHHHHHhcCCeEEEe
Q 027594 188 VHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 188 ~~~~~~~~~~~~f~v~~v 205 (221)
....+.+.+-+.+.++.|
T Consensus 308 ~~~~iR~~Ll~~~~i~aI 325 (425)
T d2okca1 308 AGETIRKRLLQDFNLHTI 325 (425)
T ss_dssp HHHHHHHHHHHHEEEEEE
T ss_pred hHHHHHHHHHHhcchhHh
Confidence 234555555444555443
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.07 E-value=7.6e-06 Score=64.85 Aligned_cols=128 Identities=12% Similarity=-0.010 Sum_probs=84.4
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++||-||-|.|..+-.+.+. + .+|+++|+ +++++.+++-...+... ...+++++...|.... +..
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~--------~~d~r~~i~~~D~~~~--l~~ 144 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK--------LDDPRVDVQVDDGFMH--IAK 144 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT--------TTSTTEEEEESCSHHH--HHT
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccc--------ccCCCeEEEechHHHH--Hhh
Confidence 4579999999999999888875 3 47999998 66999998876654321 1135777776433222 222
Q ss_pred cCCCccEEEEccc--ccCCc--CHHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHhcCCe
Q 027594 141 VAPPFDYIIGTDV--VYAEH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 141 ~~~~fD~Vi~~d~--~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~--r~~~~~~~~~~~~~~~f~ 201 (221)
..++||+|+..-. ..... .-..+.+.+.+.|+|+|.++.-... ..........+.+++.|.
T Consensus 145 ~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~ 211 (274)
T d1iy9a_ 145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFP 211 (274)
T ss_dssp CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCS
T ss_pred cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcC
Confidence 3578999997421 11111 1457889999999999997653221 223344556666777664
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.2e-05 Score=63.93 Aligned_cols=128 Identities=16% Similarity=0.059 Sum_probs=81.5
Q ss_pred CCCeEEEeCCCccHHHHHHHHh--CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~--ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++||-||-|.|..+-.+.+. ..+|+++|+ +++++.+++-...+.... ..+++++...|.... +..
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~--------~d~rv~i~~~Da~~~--l~~ 147 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY--------SSSKLTLHVGDGFEF--MKQ 147 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--HHT
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcccc--------CCCCceEEEccHHHH--Hhc
Confidence 4579999999999998888876 347999998 669999988665543211 135788777543322 122
Q ss_pred cCCCccEEEEcccccCCcC-----HHHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHhcCCeE
Q 027594 141 VAPPFDYIIGTDVVYAEHL-----LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNV 202 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~~-----~~~l~~~~~~ll~~~g~~~i~~~~r--~~~~~~~~~~~~~~~f~v 202 (221)
..++||+|+.. +.-.... -..+.+.+++.|+|+|.+.+-.... .........+.++..|..
T Consensus 148 ~~~~yDvIi~D-~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~ 215 (285)
T d2o07a1 148 NQDAFDVIITD-SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPV 215 (285)
T ss_dssp CSSCEEEEEEE-CC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSE
T ss_pred CCCCCCEEEEc-CCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCe
Confidence 35689999974 3221111 2346888999999999987644332 223344445555555543
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=6e-05 Score=60.09 Aligned_cols=79 Identities=16% Similarity=0.099 Sum_probs=57.6
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh---CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~---ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.+|.+|||+.||.|.=++.+|.+ ..+|++.|. +.=++.+++|+++.+. .++.+...|.......
T Consensus 93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------------~~~~~~~~d~~~~~~~ 160 (293)
T d2b9ea1 93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------------SCCELAEEDFLAVSPS 160 (293)
T ss_dssp CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCGGGSCTT
T ss_pred CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------------cceeeeehhhhhhccc
Confidence 36889999999999877777653 457999998 4578999999999875 5677766554433322
Q ss_pred cccCCCccEEEEccc
Q 027594 139 KAVAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~ 153 (221)
.....+||.|+...+
T Consensus 161 ~~~~~~fD~VL~DaP 175 (293)
T d2b9ea1 161 DPRYHEVHYILLDPS 175 (293)
T ss_dssp CGGGTTEEEEEECCC
T ss_pred ccccceeeEEeecCc
Confidence 222367999998654
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.94 E-value=6.5e-06 Score=66.29 Aligned_cols=128 Identities=15% Similarity=0.038 Sum_probs=77.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++||-||-|.|...-.+.+.. .+|+++|+ +++++.+++-...+.... ..+++++...|-... +..
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~--------~dprv~i~i~Da~~~--l~~ 175 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF--------SHPKLDLFCGDGFEF--LKN 175 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG--------GCTTEEEECSCHHHH--HHH
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcccc--------CCCCeEEEEchHHHH--HHh
Confidence 35699999999999998888764 47999998 669999988654432111 135677765433222 223
Q ss_pred cCCCccEEEEc--ccccCCc--CHHHHHHHHHHhcCCCeEEEEEEEe--cChhHHHHHHHHHhcCCe
Q 027594 141 VAPPFDYIIGT--DVVYAEH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN 201 (221)
Q Consensus 141 ~~~~fD~Vi~~--d~~y~~~--~~~~l~~~~~~ll~~~g~~~i~~~~--r~~~~~~~~~~~~~~~f~ 201 (221)
..++||+||.. ++..... .-..+.+.+.+.|+|+|.++.-... ..........+.+++.|.
T Consensus 176 ~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~ 242 (312)
T d2b2ca1 176 HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFP 242 (312)
T ss_dssp CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccc
Confidence 46789999974 1111111 1355788999999999997663221 112334445555555553
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=97.91 E-value=4.5e-05 Score=56.51 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=79.9
Q ss_pred chHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh-C--CEEEEecchhhHHHHHHHHHHhhhccccCC
Q 027594 40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIEVLPLLKRNVEWNTSRISQMN 116 (221)
Q Consensus 40 ~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~-g--a~v~~~D~~~~l~~~~~n~~~n~~~~~~~~ 116 (221)
+++..|.+-..+. .-..++.+||||||+.|-.+.+++.. + .+|+++|...+- .
T Consensus 5 RaafKL~EI~~k~-------~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~----------~------- 60 (180)
T d1ej0a_ 5 RAWFKLDEIQQSD-------KLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----------P------- 60 (180)
T ss_dssp HHHHHHHHHHHHH-------CCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----------C-------
T ss_pred HHHHHHHHHHHHh-------CccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc----------c-------
Confidence 3566666654443 12346789999999999999988764 3 469999963210 0
Q ss_pred CCCCCCCceEEEEEEecCCCCc-----cccCCCccEEEEcccccCC------------cCHHHHHHHHHHhcCCCeEEEE
Q 027594 117 PGSDLLGSIQAVELDWGNEDHI-----KAVAPPFDYIIGTDVVYAE------------HLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 117 ~~~~~~~~v~~~~~dw~~~~~~-----~~~~~~fD~Vi~~d~~y~~------------~~~~~l~~~~~~ll~~~g~~~i 179 (221)
.+.+.+...|..+.... .....++|+|++... .+. ......+..+.++|++||.+++
T Consensus 61 -----i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~a-p~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~ 134 (180)
T d1ej0a_ 61 -----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMA-PNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVV 134 (180)
T ss_dssp -----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCC-CCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -----cCCceEeecccccchhhhhhhhhccCcceeEEEeccc-chhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEE
Confidence 23456666444332211 123568999997533 321 1233455556777999999877
Q ss_pred EEEecChhHHHHHHHHHhcCCeEE
Q 027594 180 GYEIRSTSVHEQMLQMWKSNFNVK 203 (221)
Q Consensus 180 ~~~~r~~~~~~~~~~~~~~~f~v~ 203 (221)
=.- +.. ....++..++..|+-.
T Consensus 135 K~F-~g~-~~~~l~~~l~~~F~~V 156 (180)
T d1ej0a_ 135 KVF-QGE-GFDEYLREIRSLFTKV 156 (180)
T ss_dssp EEE-SST-THHHHHHHHHHHEEEE
T ss_pred EEe-cCc-cHHHHHHHHHhhcCEE
Confidence 332 232 2456777788777543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.87 E-value=4.3e-06 Score=65.52 Aligned_cols=81 Identities=10% Similarity=-0.034 Sum_probs=54.1
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
..++..|||+|||+|.++..+++.+.+|+++|++ .+++.++..... .++++++..|....+....
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--------------~~~~~ii~~D~l~~~~~~~ 84 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL--------------GPKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT--------------GGGEEEECSCGGGCCHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh--------------ccchhHHhhhhhhhccccc
Confidence 3468899999999999999999999999999984 577877753322 2467777755544322110
Q ss_pred c--CCCccEEEEcccccC
Q 027594 141 V--APPFDYIIGTDVVYA 156 (221)
Q Consensus 141 ~--~~~fD~Vi~~d~~y~ 156 (221)
. ....-.|++|-|++-
T Consensus 85 ~~~~~~~~~vvgNlPY~I 102 (252)
T d1qyra_ 85 AEKMGQPLRVFGNLPYNI 102 (252)
T ss_dssp HHHHTSCEEEEEECCTTT
T ss_pred ccccCCCeEEEecchHHH
Confidence 0 112236667766554
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.77 E-value=5.1e-05 Score=60.40 Aligned_cols=127 Identities=16% Similarity=0.063 Sum_probs=80.6
Q ss_pred CCCeEEEeCCCccHHHHHHHHh-C-CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccc
Q 027594 64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~-g-a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~ 140 (221)
+.++||-||-|.|...-.+.+. + .+|+++|+ +++++.+++-...+.... ..+++++...|-..... ..
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~--------~~~r~~i~~~Da~~~l~-~~ 150 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY--------EDPRVNLVIGDGVAFLK-NA 150 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--------GSTTEEEEESCHHHHHH-TS
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccc--------cCCCcEEEEccHHHHHh-hc
Confidence 4479999999999999888876 3 47999998 669999988665443211 13577777644322211 12
Q ss_pred cCCCccEEEEcccccCCc-----CHHHHHHHHHHhcCCCeEEEEEEEec--ChhHHHHHHHHHhcCC
Q 027594 141 VAPPFDYIIGTDVVYAEH-----LLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNF 200 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~~-----~~~~l~~~~~~ll~~~g~~~i~~~~r--~~~~~~~~~~~~~~~f 200 (221)
..++||+||. |+.-... .-..+.+.+++.|+|+|.+.+-.... .........+.+++.|
T Consensus 151 ~~~~yDvIi~-D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF 216 (290)
T d1xj5a_ 151 AEGSYDAVIV-DSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIF 216 (290)
T ss_dssp CTTCEEEEEE-CCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred cccCccEEEE-cCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhc
Confidence 2458999997 3321111 13568899999999999987643322 2233444455555444
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.67 E-value=4.5e-05 Score=59.29 Aligned_cols=101 Identities=19% Similarity=0.266 Sum_probs=61.8
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP 144 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~ 144 (221)
.+|||+-||.|..++.+|.+|++||+++. +.+..+++.++++........ .....+++++..|-.+. +.....+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~---~~~~~ri~li~~Ds~~~--L~~~~~~ 164 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIG---GWLQERLQLIHASSLTA--LTDITPR 164 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTH---HHHHHHEEEEESCHHHH--STTCSSC
T ss_pred CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhH---HHHhhhheeecCcHHHH--HhccCCC
Confidence 48999999999999999999999999997 557777777776543210000 00013567776432221 1223467
Q ss_pred ccEEEEcccccCCc----CHHHHHHHHHHhcC
Q 027594 145 FDYIIGTDVVYAEH----LLEPLLQTIFALSG 172 (221)
Q Consensus 145 fD~Vi~~d~~y~~~----~~~~l~~~~~~ll~ 172 (221)
||+|+. ||+|... ....-++.++.+..
T Consensus 165 ~DvIYl-DPMFp~~~Ksa~~kk~m~~l~~l~~ 195 (250)
T d2oyra1 165 PQVVYL-DPMFPHKQKSALVKKEMRVFQSLVG 195 (250)
T ss_dssp CSEEEE-CCCCCCCCC-----HHHHHHHHHSC
T ss_pred CCEEEE-CCCCccccccccchhHHHHHHhhcc
Confidence 999997 6666433 23334444555443
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=0.00011 Score=58.25 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=75.4
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+|.+|||+.||.|-=++.++.++ .+|++.|. +.=+..+++|+.+.+. .++.+...+ ......
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~------------~~~~~~~~~--~~~~~~ 166 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------------KATVKQGDG--RYPSQW 166 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------------CCEEEECCT--TCTHHH
T ss_pred cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc------------cceeeeccc--cccchh
Confidence 368899999999998888877664 46999997 4588889999988875 233332211 111111
Q ss_pred ccCCCccEEEEccccc------C---------CcC-------HHHHHHHHHHhcCCCeEEEEEEEecCh----hHHHHHH
Q 027594 140 AVAPPFDYIIGTDVVY------A---------EHL-------LEPLLQTIFALSGPKTTILLGYEIRST----SVHEQML 193 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y------~---------~~~-------~~~l~~~~~~ll~~~g~~~i~~~~r~~----~~~~~~~ 193 (221)
.....||.|+...+-- . ..+ -..++....++++|||+++.+...-.+ .+.+.|+
T Consensus 167 ~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l 246 (284)
T d1sqga2 167 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFL 246 (284)
T ss_dssp HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHH
Confidence 2346799998854421 1 111 233566666778999998776654433 3344554
Q ss_pred HH
Q 027594 194 QM 195 (221)
Q Consensus 194 ~~ 195 (221)
+.
T Consensus 247 ~~ 248 (284)
T d1sqga2 247 QR 248 (284)
T ss_dssp HH
T ss_pred Hh
Confidence 43
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=6.6e-05 Score=64.58 Aligned_cols=146 Identities=9% Similarity=-0.090 Sum_probs=86.4
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHh----C----------------CEEEEecc-hhhHHHH
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL----G----------------CNVITTDQ-IEVLPLL 101 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~----g----------------a~v~~~D~-~~~l~~~ 101 (221)
..++++|.+-+ ....+.+|+|-.||+|.+-+.+... . ..+++.|. +.+...+
T Consensus 150 ~~Iv~~mv~ll-------~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la 222 (524)
T d2ar0a1 150 RPLIKTIIHLL-------KPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA 222 (524)
T ss_dssp HHHHHHHHHHH-------CCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred cchhHhhhhcc-------cCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHH
Confidence 34556665543 2335679999999999877766542 1 14889997 5689999
Q ss_pred HHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc-cccCCCccEEEEcccccCCc--------------CHHHHHHH
Q 027594 102 KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDVVYAEH--------------LLEPLLQT 166 (221)
Q Consensus 102 ~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~-~~~~~~fD~Vi~~d~~y~~~--------------~~~~l~~~ 166 (221)
+.|+...+..... ...-.. .+++.... .....+||+|++|||+-... .--.++..
T Consensus 223 ~~nl~l~~~~~~i-------~~~~~~---~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~ 292 (524)
T d2ar0a1 223 LMNCLLHDIEGNL-------DHGGAI---RLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH 292 (524)
T ss_dssp HHHHHTTTCCCBG-------GGTBSE---EESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH
T ss_pred HHHHHhhcccccc-------cccchh---hhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHH
Confidence 9988876541100 000011 11222111 12346899999999974211 12247888
Q ss_pred HHHhcCCCeEEEEEEEecC---hhHHHHHHHHHhcCCeEEEe
Q 027594 167 IFALSGPKTTILLGYEIRS---TSVHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 167 ~~~ll~~~g~~~i~~~~r~---~~~~~~~~~~~~~~f~v~~v 205 (221)
+.+.|++||++.+..+... ......+.+.+-+.+.++.|
T Consensus 293 ~l~~Lk~gGr~aiIlP~~~Lf~~~~~~~iR~~Ll~~~~i~aI 334 (524)
T d2ar0a1 293 IIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHLHTI 334 (524)
T ss_dssp HHHHEEEEEEEEEEEEHHHHHCCTHHHHHHHHHHHHEEEEEE
T ss_pred HHHhccccCcEEEEEehHHhhhhhhhHHHHHHHHHcCCceEE
Confidence 8899999999888776421 22234455555444455444
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=97.49 E-value=0.00022 Score=54.76 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=59.8
Q ss_pred CCCeEEEeCCCccHHHHHHHHh------CCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~------ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+.++|||+|++.|.-++.++.. .++|+++|+. +.... .... .+++++...|-.+..
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-----~~~~------------~~~I~~i~gDs~~~~ 142 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-----PASD------------MENITLHQGDCSDLT 142 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-----CGGG------------CTTEEEEECCSSCSG
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-----hhcc------------ccceeeeecccccHH
Confidence 6679999999999766655532 4579999973 21110 0111 357888876544433
Q ss_pred Ccc-ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 137 HIK-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 137 ~~~-~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
... .....+|+|+.-+. +.......-+ .+..+|++||++++-+.
T Consensus 143 ~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 143 TFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp GGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECSC
T ss_pred HHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEcC
Confidence 322 22446888877543 4433222222 24578999999888554
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.38 E-value=0.0003 Score=54.19 Aligned_cols=117 Identities=14% Similarity=0.055 Sum_probs=66.5
Q ss_pred cceecchHHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhC--CEEEEecc-hh--hHHHHHHHHHHhh
Q 027594 35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IE--VLPLLKRNVEWNT 109 (221)
Q Consensus 35 g~~~W~~~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~g--a~v~~~D~-~~--~l~~~~~n~~~n~ 109 (221)
|..+-+++..|.+...+. ...++.+|+|||||.|-.+-.++.+. .+|.+.|+ -+ ..+.... .++
T Consensus 45 ~~~~SR~~~Kl~~~~~~~--------~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~---~~~ 113 (257)
T d2p41a1 45 HHAVSRGSAKLRWFVERN--------LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMS---TYG 113 (257)
T ss_dssp SCCSSTHHHHHHHHHHTT--------SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCC---STT
T ss_pred CCCcchHHHHHHHHHHhc--------CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCcccc---ccc
Confidence 445667888887655443 34456699999999999999999764 46777775 11 0010000 000
Q ss_pred hccccCCCCCCCCCceEEEEEEecCCCCccccCCCccEEEEcccccCCc-------CHHHHHHHHHHhcCCCeEEEE
Q 027594 110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH-------LLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 110 ~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~-------~~~~l~~~~~~ll~~~g~~~i 179 (221)
.+-+.... ..+.......+.|+|+|. +--+.. -.-.++..+.+.|+|||.+++
T Consensus 114 ------------~ni~~~~~----~~dv~~l~~~~~D~vlcD-m~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv 173 (257)
T d2p41a1 114 ------------WNLVRLQS----GVDVFFIPPERCDTLLCD-IGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV 173 (257)
T ss_dssp ------------GGGEEEEC----SCCTTTSCCCCCSEEEEC-CCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred ------------cccccchh----hhhHHhcCCCcCCEEEee-CCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence 01122211 111222346789999974 432211 122466667778999998655
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.12 E-value=0.00058 Score=50.34 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=69.8
Q ss_pred CCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc--
Q 027594 62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-- 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~-- 138 (221)
..+|..++|..+|.|-.+..+...+.+|+++|. ++++..+++. . .+++.+.+....+....
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~-----~-----------~~~~~~~~~~f~~~~~~l~ 79 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-----H-----------LPGLTVVQGNFRHLKRHLA 79 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----C-----------CTTEEEEESCGGGHHHHHH
T ss_pred CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc-----c-----------ccceeEeehHHHHHHHHHH
Confidence 347889999999999888888888889999997 6688777642 1 24567776444332221
Q ss_pred cccCCCccEEEEcccccC----------CcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 139 KAVAPPFDYIIGTDVVYA----------EHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~----------~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
.....++|.|+.. +=+. .+.....+.....+++|+|++.+...
T Consensus 80 ~~~~~~vdgIl~D-LGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 80 ALGVERVDGILAD-LGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HTTCSCEEEEEEE-CSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HcCCCccCEEEEE-ccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 1124678998863 3221 12244466777778999999776543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.86 E-value=0.0064 Score=43.44 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=60.1
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...+|.+||=+|||. |+.++.+++ +|++|+++|. ++-++.+++ .+. ...+ .+.....
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~----~ga-------------~~~~---~~~~~~~ 82 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGA-------------DVTL---VVDPAKE 82 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC-------------SEEE---ECCTTTS
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHH----cCC-------------cEEE---ecccccc
Confidence 345788999999996 888877775 5899999997 455666654 121 1111 1111111
Q ss_pred c---------cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 I---------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~---------~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
. ......+|+|+-+ ...+..+....++++|+|++++...
T Consensus 83 ~~~~~~~~~~~~~g~g~D~vid~------~g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 83 EESSIIERIRSAIGDLPNVTIDC------SGNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp CHHHHHHHHHHHSSSCCSEEEEC------SCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred ccchhhhhhhcccccCCceeeec------CCChHHHHHHHHHHhcCCceEEEec
Confidence 0 0113568988854 2234567777889999999877543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.85 E-value=0.00052 Score=49.75 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=62.6
Q ss_pred CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.+..+|+=||+|. |+-++..| .+|++|++.|. .+.++.++.-... ++.... .+...+.
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----------------~~~~~~---~~~~~l~ 90 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----------------RVELLY---SNSAEIE 90 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----------------GSEEEE---CCHHHHH
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----------------cceeeh---hhhhhHH
Confidence 4567999999997 88888877 57999999997 5566665543322 233322 1211222
Q ss_pred ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 140 AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
..-...|+||.+-.+-......-+-+..-+.+|||+.++
T Consensus 91 ~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 91 TAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp HHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred HhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence 223468999998666554443334456667788988865
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=96.74 E-value=0.0031 Score=48.59 Aligned_cols=107 Identities=9% Similarity=0.004 Sum_probs=67.3
Q ss_pred CCeEEEeCCCccHHHHHHHHhCC------------------------------------------EEEEecc-hhhHHHH
Q 027594 65 GKRVIELGAGCGVAGFGMALLGC------------------------------------------NVITTDQ-IEVLPLL 101 (221)
Q Consensus 65 ~~~vLelGcG~G~~~l~~a~~ga------------------------------------------~v~~~D~-~~~l~~~ 101 (221)
+..++|--||+|.+.|.+|.... ++.+.|. +++++.+
T Consensus 51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A 130 (249)
T d1o9ga_ 51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 130 (249)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence 44799999999999999886421 1345554 3466665
Q ss_pred ---HHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc--ccCCCccEEEEcccccCC---------cCHHHHHHHH
Q 027594 102 ---KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--AVAPPFDYIIGTDVVYAE---------HLLEPLLQTI 167 (221)
Q Consensus 102 ---~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~--~~~~~fD~Vi~~d~~y~~---------~~~~~l~~~~ 167 (221)
+.|+...++ ...+.+...|+.+..... .....+++||+|+|+-.. ..+..+...+
T Consensus 131 ~~~r~n~~~Agl-----------~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l 199 (249)
T d1o9ga_ 131 RRLRERLTAEGG-----------ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 199 (249)
T ss_dssp HHHHHHHHHTTS-----------SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-----------CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHH
Confidence 346665554 456777776654332211 124567999999985431 1256667777
Q ss_pred HHhcCCCeEEEEEEE
Q 027594 168 FALSGPKTTILLGYE 182 (221)
Q Consensus 168 ~~ll~~~g~~~i~~~ 182 (221)
.+.+.....++++..
T Consensus 200 ~~~~p~~s~~~it~~ 214 (249)
T d1o9ga_ 200 ASALPAHAVIAVTDR 214 (249)
T ss_dssp HHHSCTTCEEEEEES
T ss_pred HccCCCCcEEEEeCc
Confidence 777866666666543
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.52 E-value=0.0062 Score=43.68 Aligned_cols=95 Identities=20% Similarity=0.169 Sum_probs=59.7
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+|.+||=+|||+ |+.++.+++ +|+ +|+++|. ++-++.+++ .+. + .+... .+...
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga------------~--~~~~~--~~~~~ 83 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGA------------D--LVLQI--SKESP 83 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC------------S--EEEEC--SSCCH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCC------------c--ccccc--ccccc
Confidence 45778999999997 887777775 588 6999997 455555553 232 1 11111 11110
Q ss_pred c-------cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 138 I-------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 138 ~-------~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
. ......+|+|+-+ .-.+..+....++++++|++++...
T Consensus 84 ~~~~~~~~~~~g~g~Dvvid~------~G~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 84 QEIARKVEGQLGCKPEVTIEC------TGAEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp HHHHHHHHHHHTSCCSEEEEC------SCCHHHHHHHHHHSCTTCEEEECSC
T ss_pred ccccccccccCCCCceEEEec------cCCchhHHHHHHHhcCCCEEEEEec
Confidence 0 0123578998854 2235577888889999999877543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.48 E-value=0.00094 Score=48.66 Aligned_cols=95 Identities=19% Similarity=0.159 Sum_probs=58.2
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=+|||. |+.++.+|+ +|+ +|+++|. ++-++.+++ .+. ..+ .+..+..
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa--------------~~~--i~~~~~~ 83 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGA--------------TDI--LNYKNGH 83 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTC--------------SEE--ECGGGSC
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCc--------------ccc--ccccchh
Confidence 345788999999997 888888886 477 5999997 444555542 221 111 1222211
Q ss_pred Cc----c-ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HI----K-AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~----~-~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.. . .....+|+||-+ .-. ...+....++++|+|++.+..
T Consensus 84 ~~~~v~~~t~g~G~D~vid~--~g~----~~~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 84 IEDQVMKLTNGKGVDRVIMA--GGG----SETLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp HHHHHHHHTTTSCEEEEEEC--SSC----TTHHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHHHhhccCcceEEEc--cCC----HHHHHHHHHHHhcCCEEEEEe
Confidence 10 0 123569998854 222 345566678899999987743
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.36 E-value=0.0039 Score=47.36 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=45.8
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHH
Q 027594 43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVE 106 (221)
Q Consensus 43 ~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~ 106 (221)
..|.+++.+. ...+|..|||--||+|..++++.++|.+.+++|+ ++-++.|++++.
T Consensus 199 ~~L~~~lI~~--------~s~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 199 RDLIERIIRA--------SSNPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHH--------HCCTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred hhHHHHHHHH--------hCCCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence 4555655544 2347889999999999999999999999999998 568899988765
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.0036 Score=44.90 Aligned_cols=95 Identities=26% Similarity=0.298 Sum_probs=58.1
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...+|.+||=+|||. |+.++.+|+ +|++++++|. ++-++.+++ .+. + .+ .+..+...
T Consensus 27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~----lGa------------d--~~--i~~~~~~~ 86 (168)
T d1uufa2 27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGA------------D--EV--VNSRNADE 86 (168)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTC------------S--EE--EETTCHHH
T ss_pred CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc----cCC------------c--EE--EECchhhH
Confidence 455788999999997 888888775 5999888885 445555543 231 1 11 12222221
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.....+.+|+++-+ .-... .+....++++++|++.+..
T Consensus 87 ~~~~~~~~D~vid~--~g~~~----~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 87 MAAHLKSFDFILNT--VAAPH----NLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp HHTTTTCEEEEEEC--CSSCC----CHHHHHTTEEEEEEEEECC
T ss_pred HHHhcCCCceeeee--eecch----hHHHHHHHHhcCCEEEEec
Confidence 22234679998854 22222 2345567899999987754
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.003 Score=45.56 Aligned_cols=93 Identities=19% Similarity=0.218 Sum_probs=57.7
Q ss_pred CCCCCCeEEEeCC-Cc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGc-G~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=.|+ |. |..++.+|+ +|++|++++. ++-.+.+++ .+. + .+ .+..+.+
T Consensus 25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga------------~--~v--i~~~~~~ 84 (174)
T d1yb5a2 25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGA------------H--EV--FNHREVN 84 (174)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC------------S--EE--EETTSTT
T ss_pred CCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCc------------c--cc--ccccccc
Confidence 3457889999996 53 888887775 5999988875 445555543 332 1 11 1222221
Q ss_pred Cc-----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 HI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~~-----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.. ......+|+|+-+ . -.+.+....++++|+|+++..
T Consensus 85 ~~~~i~~~t~~~g~d~v~d~--~-----g~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 85 YIDKIKKYVGEKGIDIIIEM--L-----ANVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHHHHHHHCTTCEEEEEES--C-----HHHHHHHHHHHEEEEEEEEEC
T ss_pred HHHHhhhhhccCCceEEeec--c-----cHHHHHHHHhccCCCCEEEEE
Confidence 10 1124679999864 1 234567777889999998764
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.16 E-value=0.0064 Score=46.72 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHH
Q 027594 42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW 107 (221)
Q Consensus 42 ~~~la~~l~~~~~~~~~~~~~~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~ 107 (221)
-..|.+++... .-.+|..|||--||+|..++++.++|.+.+++|+ ++.++.+++++..
T Consensus 193 P~~L~~~~I~~--------~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 193 PAAVIERLVRA--------LSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp CHHHHHHHHHH--------HSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred chhHHHHHHHh--------hcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence 34566666554 2347889999999999999999999999999998 5688888888765
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.05 E-value=0.013 Score=42.81 Aligned_cols=81 Identities=11% Similarity=0.166 Sum_probs=54.3
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
..+++||+||=.|++.|+ ++..+++.|++|+.++. .+.++.+.+.+..+. .+.+...|..+.
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~d~~~~ 83 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--------------KVNVTAAETADD 83 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--------------TCCCEEEECCSH
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc--------------chhhhhhhcccH
Confidence 468899999999987763 55566788999999997 556666666666543 233445555444
Q ss_pred CCccccCCCccEEEEcccc
Q 027594 136 DHIKAVAPPFDYIIGTDVV 154 (221)
Q Consensus 136 ~~~~~~~~~fD~Vi~~d~~ 154 (221)
......-...|+++.+-.+
T Consensus 84 ~~~~~~~~~iDilin~Ag~ 102 (191)
T d1luaa1 84 ASRAEAVKGAHFVFTAGAI 102 (191)
T ss_dssp HHHHHHTTTCSEEEECCCT
T ss_pred HHHHHHhcCcCeeeecCcc
Confidence 3333334578999887543
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.82 E-value=0.024 Score=40.81 Aligned_cols=96 Identities=17% Similarity=0.146 Sum_probs=60.8
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=+|||. |+.++.+++ .|+ .|+++|. ++-++.+++ .+. ..+. +....+
T Consensus 25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga--------------~~~i--~~~~~~ 84 (174)
T d1e3ia2 25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGA--------------TDCL--NPRELD 84 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC--------------SEEE--CGGGCS
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCC--------------Cccc--CCccch
Confidence 445788999999998 999998886 487 5889997 445555553 221 1111 111111
Q ss_pred Cc------cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCC-eEEEEEEE
Q 027594 137 HI------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPK-TTILLGYE 182 (221)
Q Consensus 137 ~~------~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~-g~~~i~~~ 182 (221)
.. ......+|+|+-+ .-.+..+....+.++++ |++++...
T Consensus 85 ~~~~~~~~~~~~~G~d~vie~------~G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 85 KPVQDVITELTAGGVDYSLDC------AGTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp SCHHHHHHHHHTSCBSEEEES------SCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred hhhhhhHhhhhcCCCcEEEEe------cccchHHHHHHHHhhcCCeEEEecCC
Confidence 11 1124578998754 33456677888888885 88877643
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.79 E-value=0.0043 Score=48.65 Aligned_cols=46 Identities=13% Similarity=0.019 Sum_probs=40.2
Q ss_pred CCCCeEEEeCCCccHHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh
Q 027594 63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n 108 (221)
.+|..|||.-||+|..++++..+|.+.+++|+ ++.++.+++.+..+
T Consensus 249 ~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 249 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence 47889999999999999999999999999998 56888888766543
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.69 E-value=0.0055 Score=44.78 Aligned_cols=115 Identities=15% Similarity=0.171 Sum_probs=60.6
Q ss_pred CCCCeEEEeCCCc-cHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCC--CceEEEEEEecCCC-
Q 027594 63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL--GSIQAVELDWGNED- 136 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~--~~v~~~~~dw~~~~- 136 (221)
.+..+||=||+|. |+.++..| .+|+.|++.|. ++.++.++.....+.. .....+..... .-.+-..-+|....
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~-~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFIT-VDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECC-C-----------------------CCHH
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEE-EeccccccccccccchhhcCHHHHHHHH
Confidence 3556999999998 88888777 57999999997 5577776653221110 00000000000 00000000010000
Q ss_pred -CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEE
Q 027594 137 -HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTIL 178 (221)
Q Consensus 137 -~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~ 178 (221)
.+...-...|+||..-.+.......-+-+.+-+.+|||+.++
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 001112468999998776654433334456667788998865
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.60 E-value=0.031 Score=39.96 Aligned_cols=95 Identities=16% Similarity=0.177 Sum_probs=58.8
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCE-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=+|||. |+.++.+++ +|++ |+.+|. ++-++.+++ .+. ..+.. -.+.+
T Consensus 25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga--------------~~~i~--~~~~~ 84 (174)
T d1f8fa2 25 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGA--------------THVIN--SKTQD 84 (174)
T ss_dssp CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTC--------------SEEEE--TTTSC
T ss_pred CCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCC--------------eEEEe--CCCcC
Confidence 345788999999997 777777764 5775 677786 445555553 232 12221 11111
Q ss_pred Cc----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 137 HI----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 137 ~~----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.. ...+..||+|+-+ .-....++...++++|+|++.+..
T Consensus 85 ~~~~i~~~t~gg~D~vid~------~G~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 85 PVAAIKEITDGGVNFALES------TGSPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp HHHHHHHHTTSCEEEEEEC------SCCHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHHHHHcCCCCcEEEEc------CCcHHHHHHHHhcccCceEEEEEe
Confidence 10 1124579988854 234567778888999999987754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.02 Score=40.76 Aligned_cols=97 Identities=13% Similarity=0.037 Sum_probs=59.0
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...+|.+||-+|+|. |+.++.+|+ +|++|+++|. ++-++.+++ .+. + .++ +..+...
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~----lGa------------~--~~i--~~~~~~~ 83 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGA------------D--HYI--ATLEEGD 83 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTC------------S--EEE--EGGGTSC
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhc----cCC------------c--EEe--eccchHH
Confidence 455789999999995 888887774 6999999996 556666654 232 1 111 2222211
Q ss_pred -ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 -IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 -~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.....+.||+|+-....-.... +....++++|+|++++..
T Consensus 84 ~~~~~~~~~d~vi~~~~~~~~~~----~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 84 WGEKYFDTFDLIVVCASSLTDID----FNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp HHHHSCSCEEEEEECCSCSTTCC----TTTGGGGEEEEEEEEECC
T ss_pred HHHhhhcccceEEEEecCCccch----HHHHHHHhhccceEEEec
Confidence 1223567999886422211111 234467789999987753
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=95.53 E-value=0.013 Score=45.87 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=47.4
Q ss_pred CeEEEeCCCccHHHHHHHHhCCEE-EEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccCC
Q 027594 66 KRVIELGAGCGVAGFGMALLGCNV-ITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP 143 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga~v-~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~~ 143 (221)
++||||-||.|-.++.+.+.|.++ .++|++ .+.+..+.|.. . .+...|..+.... ...
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~----------------~--~~~~~Di~~~~~~--~~~ 60 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----------------A--KLIKGDISKISSD--EFP 60 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC----------------S--EEEESCTTTSCGG--GSC
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----------------C--CCccCChhhCCHh--Hcc
Confidence 479999999999999998889984 578984 47776666531 1 2233344333221 234
Q ss_pred CccEEEEccccc
Q 027594 144 PFDYIIGTDVVY 155 (221)
Q Consensus 144 ~fD~Vi~~d~~y 155 (221)
..|++++++|--
T Consensus 61 ~~dll~~g~PCq 72 (324)
T d1dcta_ 61 KCDGIIGGPPCQ 72 (324)
T ss_dssp CCSEEEECCCCT
T ss_pred cccEEeeccccc
Confidence 789999987754
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.052 Score=41.43 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=57.5
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++||.||=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+. ..++.+..+|..+.+
T Consensus 6 ~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-----------~~~~~~~~~Dls~~~ 74 (257)
T d1xg5a_ 6 ERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-----------PGTLIPYRCDLSNEE 74 (257)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------SSEEEEEECCTTCHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CceEEEEEccCCCHH
Confidence 45789999999999875 44455678999999997 4566666665555432 346777777776654
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|++|.|--..
T Consensus 75 ~v~~~v~~~~~~~g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 75 DILSMFSAIRSQHSGVDICINNAGLA 100 (257)
T ss_dssp HHHHHHHHHHHHHCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEeccccc
Confidence 321 1135789998876554
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.29 E-value=0.014 Score=41.42 Aligned_cols=95 Identities=22% Similarity=0.192 Sum_probs=56.6
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
...+|.+||=.|||+ |+..+.+++ .|++|+++|. ++-++.+++ .+. + .+ .+..+.+.
T Consensus 24 ~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga------------~--~~--~~~~~~~~ 83 (168)
T d1rjwa2 24 GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGA------------D--LV--VNPLKEDA 83 (168)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC------------S--EE--ECTTTSCH
T ss_pred CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCc------------c--ee--cccccchh
Confidence 345788999999998 888777775 5889999996 445555543 332 1 11 11111111
Q ss_pred ---ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 ---IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ---~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
.......+|.++-.. -....+....++++|+|++++..
T Consensus 84 ~~~~~~~~~~~~~~v~~~------~~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 84 AKFMKEKVGGVHAAVVTA------VSKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp HHHHHHHHSSEEEEEESS------CCHHHHHHHHHHEEEEEEEEECC
T ss_pred hhhcccccCCCceEEeec------CCHHHHHHHHHHhccCCceEecc
Confidence 111123344444321 13466788888999999988753
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.014 Score=46.45 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=33.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh-CC-EEEEecch-hhHHHHHHH
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQI-EVLPLLKRN 104 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~-ga-~v~~~D~~-~~l~~~~~n 104 (221)
.++.+|||+|.|.|.++..+... ++ +|+++|.+ ..++.++..
T Consensus 42 ~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~ 86 (322)
T d1i4wa_ 42 PEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAK 86 (322)
T ss_dssp TTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh
Confidence 35678999999999999999876 44 69999984 477777654
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.0096 Score=47.10 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=63.8
Q ss_pred CeEEEeCCCccHHHHHHHHhCC--E-EEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 66 KRVIELGAGCGVAGFGMALLGC--N-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a~~ga--~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
.+|+||.||.|..++.+.+.|. + |.++|. +.+.+..+.|... ..+...|..+.......
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~-----------------~~~~~~di~~~~~~~~~ 65 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------------TQLLAKTIEGITLEEFD 65 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------------SCEECSCGGGCCHHHHH
T ss_pred CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC-----------------CCcccCchhhCCHhHcC
Confidence 5899999999999988888785 5 567897 5577777765321 12222222222111111
Q ss_pred CCCccEEEEcccccCCc----------CHHHHHHHHHHhcCC---CeEEEEEEEecC---hhHHHHHHHHHhc-CCeEE
Q 027594 142 APPFDYIIGTDVVYAEH----------LLEPLLQTIFALSGP---KTTILLGYEIRS---TSVHEQMLQMWKS-NFNVK 203 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~----------~~~~l~~~~~~ll~~---~g~~~i~~~~r~---~~~~~~~~~~~~~-~f~v~ 203 (221)
...+|+++++++.-..+ ....|+..+.++++. ...+++..-... ....+.+.+.+++ ++.+.
T Consensus 66 ~~~~Dll~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~ 144 (343)
T d1g55a_ 66 RLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQ 144 (343)
T ss_dssp HHCCSEEEECCC------------------CHHHHHHHHGGGCSSCCSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEE
T ss_pred CCCccEEEeecccccccccccccccccccccccchhhhhHhhhcCCCceeeeeccCCcccchhhHHHHhhhhccccccc
Confidence 23689999988754322 122354444444321 134444444433 2234556666643 66653
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.09 E-value=0.025 Score=44.44 Aligned_cols=45 Identities=22% Similarity=0.279 Sum_probs=37.0
Q ss_pred CCCCCCeEEEeCCCccHHHHHHHHhCCEE-EEecc-hhhHHHHHHHH
Q 027594 61 SKLKGKRVIELGAGCGVAGFGMALLGCNV-ITTDQ-IEVLPLLKRNV 105 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l~~a~~ga~v-~~~D~-~~~l~~~~~n~ 105 (221)
....+.+||||-||.|..++.+.+.|.++ .++|. +.+++..+.|.
T Consensus 7 ~~~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~ 53 (327)
T d2c7pa1 7 KQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF 53 (327)
T ss_dssp CTTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred ccCCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence 34577899999999999999999999984 56898 45888877764
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.96 E-value=0.057 Score=41.40 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=56.5
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc--hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN 134 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~ 134 (221)
+..++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+..++ .++.+...|..+
T Consensus 13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~D~~~ 79 (272)
T d1g0oa_ 13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG-------------SDAACVKANVGV 79 (272)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTC
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC-------------CceeeEeCCCCC
Confidence 345789999999998885 56667788999999985 346666666666554 356777766665
Q ss_pred CCCcc-------ccCCCccEEEEccccc
Q 027594 135 EDHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 135 ~~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
.+... ....+.|+++.+.-..
T Consensus 80 ~~~v~~~~~~~~~~~g~idilV~nag~~ 107 (272)
T d1g0oa_ 80 VEDIVRMFEEAVKIFGKLDIVCSNSGVV 107 (272)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHHhCCCCccccccccc
Confidence 43321 1135689988875544
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.90 E-value=0.04 Score=39.58 Aligned_cols=94 Identities=22% Similarity=0.204 Sum_probs=57.9
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=+|||. |+..+.+|+ +|+ +|+++|. ++-++.+++ .+. . .+. +-.+..
T Consensus 25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-------------~-~vi--~~~~~~ 84 (182)
T d1vj0a2 25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGA-------------D-LTL--NRRETS 84 (182)
T ss_dssp SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTC-------------S-EEE--ETTTSC
T ss_pred CCCCCCEEEEECCCccchhheeccccccccccccccccccccccccc----ccc-------------e-EEE--eccccc
Confidence 345789999999996 888887775 587 6999997 556666653 221 0 111 111111
Q ss_pred C------cc--ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 H------IK--AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~------~~--~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
. .. .....+|+|+- +.-. +..+....++++++|++++.
T Consensus 85 ~~~~~~~i~~~~~~~g~Dvvid--~vG~----~~~~~~a~~~l~~~G~iv~~ 130 (182)
T d1vj0a2 85 VEERRKAIMDITHGRGADFILE--ATGD----SRALLEGSELLRRGGFYSVA 130 (182)
T ss_dssp HHHHHHHHHHHTTTSCEEEEEE--CSSC----TTHHHHHHHHEEEEEEEEEC
T ss_pred hHHHHHHHHHhhCCCCceEEee--cCCc----hhHHHHHHHHhcCCCEEEEE
Confidence 0 00 11346999884 3332 33456667889999998765
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.80 E-value=0.094 Score=39.76 Aligned_cols=82 Identities=18% Similarity=0.278 Sum_probs=53.4
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
+++||++|=-|++.|+ ++..+++.|++|+++|. .+.++.+.+.+.... ..++.....|..+.+.
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~------------g~~~~~~~~Dv~~~~~ 69 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY------------GVETMAFRCDVSNYEE 69 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh------------CCcEEEEEccCCCHHH
Confidence 4689999999998874 45566778999999997 445554444443332 2356667777665433
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ..-.+.|++|.|--+.
T Consensus 70 v~~~~~~~~~~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 70 VKKLLEAVKEKFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCC
Confidence 21 1124789999875544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=94.71 E-value=0.042 Score=39.14 Aligned_cols=100 Identities=19% Similarity=0.107 Sum_probs=56.1
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
+++-=+|+|. | .++..+++.|.+|++.|. ++-++.++.+ +..... .+ ............ ......-
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~-~~----~~~~~~~~~~~~--~~~~e~~ 70 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR----GAIIAE-GP----GLAGTAHPDLLT--SDIGLAV 70 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----TSEEEE-SS----SCCEEECCSEEE--SCHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----CCCchh-hh----hhhhhhhhhhhh--hhhHhHh
Confidence 6788899997 4 456667788999999997 4444444322 110000 00 000000000000 1111113
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
..+|+|+.+- .....+.+++.+..+++++..+++
T Consensus 71 ~~aD~iii~v---~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 71 KDADVILIVV---PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp TTCSEEEECS---CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred cCCCEEEEEE---chhHHHHHHHHhhhccCCCCEEEE
Confidence 5789998763 334578889999999999886654
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.26 E-value=0.14 Score=36.26 Aligned_cols=94 Identities=17% Similarity=0.096 Sum_probs=57.0
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+|.+||=+|||. |+.++.+++ +|+ .|+.+|. ++-++.+++ .+. ..+. +..+...
T Consensus 30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga--------------~~~i--~~~~~~~ 89 (172)
T d1h2ba2 30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGA--------------DHVV--DARRDPV 89 (172)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTC--------------SEEE--ETTSCHH
T ss_pred cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----ccc--------------ceee--cCcccHH
Confidence 35788999999997 788777764 576 5788897 445555553 221 1121 1111110
Q ss_pred ---c-cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 138 ---I-KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 138 ---~-~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
. ......+|+|+-+ ......+....++++++|++++..
T Consensus 90 ~~~~~~~~~~g~d~vid~------~g~~~~~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 90 KQVMELTRGRGVNVAMDF------VGSQATVDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp HHHHHHTTTCCEEEEEES------SCCHHHHHHGGGGEEEEEEEEECC
T ss_pred HHHHHhhCCCCceEEEEe------cCcchHHHHHHHHHhCCCEEEEEe
Confidence 0 0123568888744 223445677778899999988754
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.046 Score=41.60 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=58.6
Q ss_pred CCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc
Q 027594 64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK 139 (221)
Q Consensus 64 ~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~ 139 (221)
.||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+..... ..++.+..+|..+.+...
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dv~~~~~v~ 70 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE-----------PQKTLFIQCDVADQQQLR 70 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC-----------GGGEEEEECCTTSHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC-----------CCcEEEEEeecCCHHHHH
Confidence 58899999988774 45556678999999997 4555555544433211 245777777776654321
Q ss_pred -------ccCCCccEEEEcccccCCcCHHHHH
Q 027594 140 -------AVAPPFDYIIGTDVVYAEHLLEPLL 164 (221)
Q Consensus 140 -------~~~~~fD~Vi~~d~~y~~~~~~~l~ 164 (221)
....+.|+++.+--+.....++..+
T Consensus 71 ~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~ 102 (254)
T d2gdza1 71 DTFRKVVDHFGRLDILVNNAGVNNEKNWEKTL 102 (254)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCSSSHHHHH
T ss_pred HHHHHHHHHcCCcCeecccccccccccchhee
Confidence 1125789999987777766655533
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=94.19 E-value=0.041 Score=42.09 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=55.3
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+...+..... ..++....+|..+.+..
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~-----------~~~~~~~~~Dvt~~~~v 70 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP-----------DAEVLTTVADVSDEAQV 70 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT-----------TCCEEEEECCTTSHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-----------CCeEEEEeccCCCHHHH
Confidence 578999999998875 56677888999999997 5566666655554432 34677777777665432
Q ss_pred c-------ccCCCccEEEEccc
Q 027594 139 K-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~ 153 (221)
. ..-.+.|+++.|--
T Consensus 71 ~~~~~~~~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 71 EAYVTATTERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHhCCCCEEEECCc
Confidence 1 11257899988754
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.96 E-value=0.085 Score=37.52 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=63.9
Q ss_pred CCCCeEEEeCC-C-ccHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGc-G-~G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++.+||=-|+ | .|..++-+|+ +|++|+++.. ++-.+.+++ .+. +.+ +..-++......
T Consensus 22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~----lGa------------d~v-i~~~~~~~~~~~ 84 (167)
T d1tt7a2 22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGA------------SEV-ISREDVYDGTLK 84 (167)
T ss_dssp GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTC------------SEE-EEHHHHCSSCCC
T ss_pred CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHh----hcc------------cce-Eeccchhchhhh
Confidence 35667888775 3 3677777775 5999999886 445555543 221 111 111111111111
Q ss_pred cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCCeEEEe
Q 027594 139 KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV 205 (221)
Q Consensus 139 ~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f~v~~v 205 (221)
....+.+|+|+- ++- .+.+....+.|+|+|++++..........-.+...+.++.++.-+
T Consensus 85 ~~~~~gvd~vid--~vg-----g~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~ 144 (167)
T d1tt7a2 85 ALSKQQWQGAVD--PVG-----GKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGI 144 (167)
T ss_dssp SSCCCCEEEEEE--SCC-----THHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEEC
T ss_pred cccCCCceEEEe--cCc-----HHHHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEE
Confidence 223467999874 332 245567788899999987754333222111223334455555544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.93 E-value=0.019 Score=40.92 Aligned_cols=95 Identities=18% Similarity=0.153 Sum_probs=56.3
Q ss_pred CCCCCCeEEEeCC-Cc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 61 SKLKGKRVIELGA-GC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 61 ~~~~~~~vLelGc-G~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
...++.+||=+|| |. |+..+.+++ .|. +|+.+|. ++-++.+++ .+. . .+. +....
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga-------------~-~~i--~~~~~ 83 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGA-------------D-YVI--NASMQ 83 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTC-------------S-EEE--ETTTS
T ss_pred CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCC-------------c-eee--ccCCc
Confidence 4557889999997 43 676666554 574 7999996 445555553 231 1 111 11111
Q ss_pred CCc-----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 136 DHI-----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 136 ~~~-----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
+.. ......||+|+-+ .--...++...++++|+|++++..
T Consensus 84 ~~~~~~~~~~~~~~~d~vid~------~g~~~~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 84 DPLAEIRRITESKGVDAVIDL------NNSEKTLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp CHHHHHHHHTTTSCEEEEEES------CCCHHHHTTGGGGEEEEEEEEECC
T ss_pred CHHHHHHHHhhcccchhhhcc------cccchHHHhhhhhcccCCEEEEec
Confidence 111 0124569988854 223455666778899999987753
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.90 E-value=0.087 Score=37.00 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCCCCeEEEeCCCc-cHHHHHHHH-hCCEEEEecc-hhhHHHHH
Q 027594 62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK 102 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~ 102 (221)
..+|.+||=+|||. |+.++.+++ +|++|+++|. ++-++.++
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~ 68 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR 68 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence 45788999999997 888887775 5889999997 44555554
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.56 E-value=0.041 Score=42.31 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=56.8
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+.. ..++....+|..+.+.
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~----------~~~~~~~~~Dvs~~~~ 71 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVS----------EKQVNSVVADVTTEDG 71 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCC----------GGGEEEEECCTTSHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----------CCceEEEEccCCCHHH
Confidence 3689999999998874 45566778999999997 55777777766655421 2467778877766543
Q ss_pred cc-------ccCCCccEEEEccc
Q 027594 138 IK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~ 153 (221)
.. ....+.|+++.+--
T Consensus 72 v~~~~~~~~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 72 QDQIINSTLKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhCCceEEEeCCc
Confidence 21 11257899988743
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.55 E-value=0.08 Score=40.34 Aligned_cols=81 Identities=16% Similarity=0.109 Sum_probs=54.7
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
+.+||++|=.|+..|+ ++..+++.|++|+.+|. ++-++.+.+.+...+ .++.+..+|..+.+.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~-------------~~~~~~~~D~s~~~~ 69 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG-------------LNVEGSVCDLLSRTE 69 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEEeecCCHHH
Confidence 4689999999998874 45566778999999997 445566655555543 356677777766543
Q ss_pred c--------cccCCCccEEEEccccc
Q 027594 138 I--------KAVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~--------~~~~~~fD~Vi~~d~~y 155 (221)
. .....+.|+++.+--+.
T Consensus 70 ~~~~~~~~~~~~~g~idilinnag~~ 95 (258)
T d1ae1a_ 70 RDKLMQTVAHVFDGKLNILVNNAGVV 95 (258)
T ss_dssp HHHHHHHHHHHTTSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCcEEEecccccc
Confidence 2 11235688888765544
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.54 E-value=0.033 Score=39.89 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=54.7
Q ss_pred CCCCCCeEEEeCC-Cc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGc-G~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=.|+ |. |..++.+|+ .|++|++++. ++-.+.+++ .+. + .+ .+..+.+
T Consensus 22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga------------~--~v--i~~~~~~ 81 (183)
T d1pqwa_ 22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV------------E--YV--GDSRSVD 81 (183)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC------------S--EE--EETTCST
T ss_pred CCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----ccc------------c--cc--ccCCccC
Confidence 3457889999884 43 777777775 5999888764 444454442 332 1 11 1222221
Q ss_pred Ccc-----ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 HIK-----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~~~-----~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
... .....||+|+-+ .- .+.+..+.++|+++|+++..
T Consensus 82 ~~~~v~~~t~~~g~d~v~d~--~g-----~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 82 FADEILELTDGYGVDVVLNS--LA-----GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HHHHHHHHTTTCCEEEEEEC--CC-----THHHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCEEEEEec--cc-----chHHHHHHHHhcCCCEEEEE
Confidence 100 124679999953 33 23455667889999997764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.1 Score=39.48 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=59.0
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+.|+.+|=-|++.|+ ++..+++.|++|+++|. .+-++.+.+.+...+ .++....+|..+.+
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~-------------~~~~~~~~Dvs~~~ 69 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG-------------AKVHTFVVDCSNRE 69 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHH
Confidence 45789999999999985 56667788999999997 556777766665443 46777777776654
Q ss_pred Ccc-------ccCCCccEEEEcccccC
Q 027594 137 HIK-------AVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y~ 156 (221)
... ......|+++.+--+..
T Consensus 70 ~v~~~~~~i~~~~g~idilinnag~~~ 96 (244)
T d1yb1a_ 70 DIYSSAKKVKAEIGDVSILVNNAGVVY 96 (244)
T ss_dssp HHHHHHHHHHHHTCCCSEEEECCCCCC
T ss_pred HHHHHHHHHHHHcCCCceeEeeccccc
Confidence 321 22457899988765543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=93.29 E-value=0.1 Score=39.65 Aligned_cols=82 Identities=15% Similarity=0.188 Sum_probs=54.8
Q ss_pred CCCCCeEEEeCCCcc---HHHHHHHHhCCEEEEec-c-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCG---VAGFGMALLGCNVITTD-Q-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G---~~~l~~a~~ga~v~~~D-~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.+.||+||=-|++.| .++..+++.|++|+.++ . .+.++.+.+.+..++ .++.....|..+.+
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~D~~~~~ 69 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG-------------AQGVAIQADISKPS 69 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC-------------CCceEecCCCCCHH
Confidence 458999999998776 35556677899988765 3 446777777776654 36677777765543
Q ss_pred Ccc-------ccCCCccEEEEcccccC
Q 027594 137 HIK-------AVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y~ 156 (221)
... ......|+++.+--+..
T Consensus 70 ~v~~~~~~~~~~~g~idilinnag~~~ 96 (259)
T d1ja9a_ 70 EVVALFDKAVSHFGGLDFVMSNSGMEV 96 (259)
T ss_dssp HHHHHHHHHHHHHSCEEEEECCCCCCC
T ss_pred HHHHHHHHHHHHcCCCcEEEecccccc
Confidence 321 12346899988765553
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=93.24 E-value=0.071 Score=40.61 Aligned_cols=82 Identities=21% Similarity=0.146 Sum_probs=53.0
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
+++||++|=-|++.|+ ++..+++.|++|+++|. ++.+..+.+.+.... ..++....+|..+.+.
T Consensus 6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~------------g~~~~~~~~Dv~~~~~ 73 (260)
T d1h5qa_ 6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF------------GVKTKAYQCDVSNTDI 73 (260)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH------------TCCEEEEECCTTCHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh------------CCceEEEEccCCCHHH
Confidence 5789999999988774 45566778999999996 444444433333222 2456777777665543
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--+.
T Consensus 74 v~~~~~~~~~~~g~iDilVnnAg~~ 98 (260)
T d1h5qa_ 74 VTKTIQQIDADLGPISGLIANAGVS 98 (260)
T ss_dssp HHHHHHHHHHHSCSEEEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCcEeccccccc
Confidence 21 1235789998876544
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=93.23 E-value=0.066 Score=40.86 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=54.2
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.....|..+.+..
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~~~~~v 69 (260)
T d1zema1 3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG-------------VEARSYVCDVTSEEAV 69 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-------------SCEEEEECCTTCHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHHH
Confidence 589999999988874 55667788999999997 557777766665543 3567777777655332
Q ss_pred c-------ccCCCccEEEEccc
Q 027594 139 K-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~ 153 (221)
. ..-.+.|+++.+--
T Consensus 70 ~~~~~~~~~~~g~iDilVnnaG 91 (260)
T d1zema1 70 IGTVDSVVRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhCCCCeehhhhc
Confidence 1 11257899987643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.19 E-value=0.14 Score=37.24 Aligned_cols=99 Identities=20% Similarity=0.128 Sum_probs=60.9
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||-+|||. |+.++.+|+ +|+ +|+++|. ++-++.+++ .+. -.+.. ....
T Consensus 22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~----~Ga--------------~~~~~---~~~~ 80 (195)
T d1kola2 22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF--------------EIADL---SLDT 80 (195)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC--------------EEEET---TSSS
T ss_pred CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh----ccc--------------cEEEe---CCCc
Confidence 455788999999998 888887775 466 6999997 456666654 221 11110 0111
Q ss_pred Cc------cccCCCccEEEEcccc---------cCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 HI------KAVAPPFDYIIGTDVV---------YAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~~------~~~~~~fD~Vi~~d~~---------y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.. ......+|+++-+--. .........++...++++|+|++.+.
T Consensus 81 ~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~ 139 (195)
T d1kola2 81 PLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP 139 (195)
T ss_dssp CHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred CHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence 10 0124568998843110 11223456788899999999998775
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=93.03 E-value=0.12 Score=39.76 Aligned_cols=84 Identities=20% Similarity=0.315 Sum_probs=53.5
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
+..++||++|=-|+..|+ ++..+++.|++|+++|. ++.++.+.+.+.... ..++.+...|..+.
T Consensus 20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~------------g~~~~~~~~D~~~~ 87 (294)
T d1w6ua_ 20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT------------GNKVHAIQCDVRDP 87 (294)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc------------CCceEEEEecccCh
Confidence 457899999999988773 44556677999999997 445554444443322 24566666665554
Q ss_pred CCc-------cccCCCccEEEEccccc
Q 027594 136 DHI-------KAVAPPFDYIIGTDVVY 155 (221)
Q Consensus 136 ~~~-------~~~~~~fD~Vi~~d~~y 155 (221)
+.. .......|+++.+--..
T Consensus 88 ~~v~~~~~~~~~~~g~iDilvnnAg~~ 114 (294)
T d1w6ua_ 88 DMVQNTVSELIKVAGHPNIVINNAAGN 114 (294)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred HHHHHHhhhhhhhccccchhhhhhhhc
Confidence 322 12246789998875443
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.00 E-value=0.059 Score=41.46 Aligned_cols=81 Identities=23% Similarity=0.202 Sum_probs=56.3
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+.. ..++.....|..+....
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~----------~~~~~~~~~Dv~~~~~v 71 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVP----------AEKINAVVADVTEASGQ 71 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEECCTTSHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CcceEEEEeeCCCHHHH
Confidence 578999999998874 45566778999999997 45777777777665431 24677788777665432
Q ss_pred c-------ccCCCccEEEEccc
Q 027594 139 K-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~ 153 (221)
. ..-.+.|+++.+--
T Consensus 72 ~~~~~~~~~~~G~iDilVnnAG 93 (274)
T d1xhla_ 72 DDIINTTLAKFGKIDILVNNAG 93 (274)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHcCCceEEEeecc
Confidence 1 11247899998743
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=92.99 E-value=0.12 Score=41.50 Aligned_cols=111 Identities=13% Similarity=0.019 Sum_probs=61.3
Q ss_pred CCCeEEEeCCCccHHHHHHHH------------hC----C--EEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCc
Q 027594 64 KGKRVIELGAGCGVAGFGMAL------------LG----C--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGS 124 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~------------~g----a--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~ 124 (221)
+..+|.|+||.+|-.++.+.. .+ . +|.+.|.|. =...+=+++.... ....+
T Consensus 51 ~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~----------~~~~~ 120 (359)
T d1m6ex_ 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN----------DVDGV 120 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC----------SCTTC
T ss_pred CceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccc----------cCCCC
Confidence 336899999999977653221 11 1 488899753 2222222221111 11122
Q ss_pred eEEEEEEecCCCCccccCCCccEEEEcccccCCc---------------------------------CHHHHHHHHHHhc
Q 027594 125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVVYAEH---------------------------------LLEPLLQTIFALS 171 (221)
Q Consensus 125 v~~~~~dw~~~~~~~~~~~~fD~Vi~~d~~y~~~---------------------------------~~~~l~~~~~~ll 171 (221)
+.+ ..-=+.+-.--.+.++.+++.++-.+++.+ ++..+++.=.+=|
T Consensus 121 ~f~-~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 199 (359)
T d1m6ex_ 121 CFI-NGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEV 199 (359)
T ss_dssp EEE-EEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHB
T ss_pred eEE-EecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222 211133333334567788888877776521 2344555556668
Q ss_pred CCCeEEEEEEEecC
Q 027594 172 GPKTTILLGYEIRS 185 (221)
Q Consensus 172 ~~~g~~~i~~~~r~ 185 (221)
.|||++++....|.
T Consensus 200 v~GG~mvl~~~gr~ 213 (359)
T d1m6ex_ 200 VPGGRMVLTILGRR 213 (359)
T ss_dssp CTTCEEEEEEEECS
T ss_pred cCCcEEEEEEeccC
Confidence 99999999877664
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=92.76 E-value=0.16 Score=38.56 Aligned_cols=82 Identities=15% Similarity=0.124 Sum_probs=54.6
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
.+++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+.+
T Consensus 4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~~~~ 70 (259)
T d2ae2a_ 4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-------------FKVEASVCDLSSRS 70 (259)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEEeeCCCHH
Confidence 35689999999998874 45566778999999997 456666665555443 35666676665543
Q ss_pred Ccc--------ccCCCccEEEEccccc
Q 027594 137 HIK--------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~--------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.+--+.
T Consensus 71 ~v~~~~~~~~~~~~~~idilvnnAG~~ 97 (259)
T d2ae2a_ 71 ERQELMNTVANHFHGKLNILVNNAGIV 97 (259)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHhCCCceEEEECCcee
Confidence 211 1134789999875543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.75 E-value=0.22 Score=35.64 Aligned_cols=98 Identities=13% Similarity=0.000 Sum_probs=55.9
Q ss_pred CCCCCeEEEeCCCc--cHHHHHHH-HhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGC--GVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~--G~~~l~~a-~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
..+|.+||=-|++. |..++-+| ..|++|+++-. ++-.+.+++ .+. +.+.-..-+|.+..
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~----lGa------------~~vi~~~~~~~~~~- 91 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGA------------KEVLAREDVMAERI- 91 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTC------------SEEEECC--------
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh----ccc------------ceeeecchhHHHHH-
Confidence 44678999999655 56777777 46999998875 455555553 221 11111111111111
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
.......+|+|+- ++-. ..+....++|+|+|+++.....
T Consensus 92 ~~~~~~gvD~vid--~vgg-----~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 92 RPLDKQRWAAAVD--PVGG-----RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp --CCSCCEEEEEE--CSTT-----TTHHHHHHTEEEEEEEEECSCC
T ss_pred HHhhccCcCEEEE--cCCc-----hhHHHHHHHhCCCceEEEeecc
Confidence 1123568999884 3332 2356667889999998876544
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.72 E-value=0.12 Score=39.24 Aligned_cols=82 Identities=16% Similarity=0.025 Sum_probs=55.0
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.....|..+..
T Consensus 4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~-------------~~~~~~~~Dv~~~~ 70 (259)
T d1xq1a_ 4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG-------------FQVTGSVCDASLRP 70 (259)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEeccCCCHH
Confidence 35689999999998875 55666778999999997 456666655555443 35677776665543
Q ss_pred Ccc--------ccCCCccEEEEccccc
Q 027594 137 HIK--------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~--------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.+--+.
T Consensus 71 ~v~~~~~~~~~~~~g~idilvnnAG~~ 97 (259)
T d1xq1a_ 71 EREKLMQTVSSMFGGKLDILINNLGAI 97 (259)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECCC-
T ss_pred HHHHHHHHHHHHhCCCccccccccccc
Confidence 221 1135789998875544
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=92.69 E-value=0.08 Score=40.26 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=54.6
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+.+.
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-------------~~~~~~~~Dvs~~~~ 74 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------------GQAFACRCDITSEQE 74 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEccCCCHHH
Confidence 3689999999988874 44556678999999997 456666666665543 356677777665433
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--+.
T Consensus 75 ~~~~~~~~~~~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 75 LSALADFAISKLGKVDILVNNAGGG 99 (255)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCCCEeeeCCcCC
Confidence 21 1125789998875544
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.52 E-value=0.13 Score=38.97 Aligned_cols=82 Identities=13% Similarity=0.061 Sum_probs=55.3
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..+++|.+|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.....|..+.+
T Consensus 6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-------------~~~~~~~~Dvt~~~ 72 (251)
T d2c07a1 6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-------------YESSGYAGDVSKKE 72 (251)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-------------CCEEEEECCTTCHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHH
Confidence 34689999999988773 34455667999999997 456666666665543 35677777766543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.+..+.
T Consensus 73 ~v~~~~~~~~~~~g~iDilvnnag~~ 98 (251)
T d2c07a1 73 EISEVINKILTEHKNVDILVNNAGIT 98 (251)
T ss_dssp HHHHHHHHHHHHCSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHhcCCceeeeeccccc
Confidence 321 2235889999876554
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=92.42 E-value=0.15 Score=39.74 Aligned_cols=108 Identities=14% Similarity=0.143 Sum_probs=66.0
Q ss_pred CeEEEeCCCccHHHHHHH-HhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC--cc---
Q 027594 66 KRVIELGAGCGVAGFGMA-LLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--IK--- 139 (221)
Q Consensus 66 ~~vLelGcG~G~~~l~~a-~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~--~~--- 139 (221)
+.|+.||||.=.-+.-+. ..+.+++=+|.+++++.=++-+..++.. ...+......|..+.-. +.
T Consensus 91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~---------~~~~~~~v~~Dl~~~~~~~L~~~g 161 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVT---------PTADRREVPIDLRQDWPPALRSAG 161 (297)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCC---------CSSEEEEEECCTTSCHHHHHHHTT
T ss_pred CeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCC---------CCceEEEecccccchHHHHHHhcC
Confidence 357779999755444443 2345677788898888777777766531 12345555554432100 00
Q ss_pred ccCCCccEEEEcccccC--CcCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 140 AVAPPFDYIIGTDVVYA--EHLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 140 ~~~~~fD~Vi~~d~~y~--~~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
......-++++-.+++. .+....+++.+..+..||+.+.+-+.
T Consensus 162 ~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~ 206 (297)
T d2uyoa1 162 FDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS 206 (297)
T ss_dssp CCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred CCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 11123345555555543 66788999999999999999877554
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.32 E-value=0.083 Score=40.30 Aligned_cols=81 Identities=16% Similarity=0.143 Sum_probs=55.6
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++||.+|=-|++.|+ ++..+++.|++|+++|. .+.++.+.+.+...+.. ..++.+...|..+....
T Consensus 3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~----------~~~~~~~~~Dvt~~~~v 72 (264)
T d1spxa_ 3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVS----------EQNVNSVVADVTTDAGQ 72 (264)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEECCTTSHHHH
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----------cCceEEEEccCCCHHHH
Confidence 589999999998874 45566778999999997 55777777766655421 24577778777655432
Q ss_pred c-------ccCCCccEEEEccc
Q 027594 139 K-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~ 153 (221)
. ..-.+.|+++.|--
T Consensus 73 ~~~~~~~~~~~g~iDilvnnAG 94 (264)
T d1spxa_ 73 DEILSTTLGKFGKLDILVNNAG 94 (264)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhCCCCEeecccc
Confidence 1 11257899987743
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.18 Score=38.40 Aligned_cols=86 Identities=22% Similarity=0.290 Sum_probs=53.9
Q ss_pred CCCCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEec
Q 027594 58 FCPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133 (221)
Q Consensus 58 ~~~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~ 133 (221)
|.|..++||++|=-|++.|+ ++..+++.|++|++++. .+.++.+...+.... ...+.....|..
T Consensus 7 f~~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~------------~~~~~~~~~d~~ 74 (269)
T d1xu9a_ 7 FRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG------------AASAHYIAGTME 74 (269)
T ss_dssp CCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------------CSEEEEEECCTT
T ss_pred CCccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh------------cccchhhhhhhh
Confidence 45667899999999999984 55566778999999997 556666655544432 134444443332
Q ss_pred CCCCc-------cccCCCccEEEEccccc
Q 027594 134 NEDHI-------KAVAPPFDYIIGTDVVY 155 (221)
Q Consensus 134 ~~~~~-------~~~~~~fD~Vi~~d~~y 155 (221)
+.... .......|+++.+...+
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~li~nag~~ 103 (269)
T d1xu9a_ 75 DMTFAEQFVAQAGKLMGGLDMLILNHITN 103 (269)
T ss_dssp CHHHHHHHHHHHHHHHTSCSEEEECCCCC
T ss_pred hHHHHHHHHHHHHHHhCCccccccccccc
Confidence 22111 11134678888776554
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=92.11 E-value=0.12 Score=39.16 Aligned_cols=81 Identities=12% Similarity=0.183 Sum_probs=54.4
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch--hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~--~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
++||++|=-|++.|+ ++..+++.|++|+++|.. +.++.+...+.... ..++.+...|..+.+.
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~------------g~~~~~~~~Dv~~~~~ 69 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH------------GVKVLYDGADLSKGEA 69 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH------------TSCEEEECCCTTSHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc------------CCcEEEEECCCCCHHH
Confidence 478999999998875 555677889999999963 36666666655433 2457777777666543
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ..-.+.|++|.|--+.
T Consensus 70 v~~~~~~~~~~~G~iDiLVnnAG~~ 94 (260)
T d1x1ta1 70 VRGLVDNAVRQMGRIDILVNNAGIQ 94 (260)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCCC
T ss_pred HHHHHHHHHHHhCCCcEEEeecccc
Confidence 21 1125789998875444
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.17 Score=39.27 Aligned_cols=88 Identities=17% Similarity=0.277 Sum_probs=56.9
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
|..++||++|=-|++.|+ ++..+++.|++|+++|. .+.++.+.+.+..+... ....++.....|..+.
T Consensus 7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~--------~~~~~~~~~~~Dvs~~ 78 (297)
T d1yxma1 7 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP--------TKQARVIPIQCNIRNE 78 (297)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT--------TCCCCEEEEECCTTCH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc--------ccCceEEEEeccCCCH
Confidence 567899999999998874 34556678999999997 45665555555443210 0134677777776655
Q ss_pred CCcc-------ccCCCccEEEEccccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~~y 155 (221)
+... ....+.|+++.+-...
T Consensus 79 ~~v~~~~~~~~~~~G~iDiLVnnAg~~ 105 (297)
T d1yxma1 79 EEVNNLVKSTLDTFGKINFLVNNGGGQ 105 (297)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHhCCeEEEEeecccc
Confidence 4321 1125789999875543
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=91.35 E-value=0.3 Score=39.00 Aligned_cols=41 Identities=22% Similarity=0.204 Sum_probs=27.1
Q ss_pred CCCeEEEeCCCccHHHHHHHHh---------CCEEEEecchhhHHHHHHH
Q 027594 64 KGKRVIELGAGCGVAGFGMALL---------GCNVITTDQIEVLPLLKRN 104 (221)
Q Consensus 64 ~~~~vLelGcG~G~~~l~~a~~---------ga~v~~~D~~~~l~~~~~n 104 (221)
+..+|+|+|+|.|.++.-+.+. ..+++.++.+..+...+++
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~ 128 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT 128 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHH
Confidence 3458999999999887654331 1257888976655544443
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=91.30 E-value=0.1 Score=39.86 Aligned_cols=79 Identities=20% Similarity=0.226 Sum_probs=51.0
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+.. ...+.+..+|..+.+.
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~--------------~~~~~~~~~Dv~~~~~ 68 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS--------------PDVISFVHCDVTKDED 68 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--------------TTTEEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC--------------CCceEEEEccCCCHHH
Confidence 4689999999998874 34456677999999997 4455544443322 2356677777665433
Q ss_pred cc-------ccCCCccEEEEcccc
Q 027594 138 IK-------AVAPPFDYIIGTDVV 154 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~ 154 (221)
.. ....+.|+++.+--+
T Consensus 69 v~~~~~~~~~~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 69 VRNLVDTTIAKHGKLDIMFGNVGV 92 (268)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCcceecccccc
Confidence 21 112578999876543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=91.06 E-value=0.15 Score=38.77 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=54.5
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-h-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
+++||++|=-|++.|+ ++..+++.|++|+++|. + +.++.+.+.+...+ .++.....|..+.+
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g-------------~~~~~~~~Dvt~~~ 70 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-------------GEAIAVKGDVTVES 70 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CEEEEEECCTTSHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHH
Confidence 5689999999998874 45566678999999985 3 35666666665543 35667777766543
Q ss_pred Ccc-------ccCCCccEEEEccccc
Q 027594 137 HIK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y 155 (221)
... ....+.|+++.|--+.
T Consensus 71 ~v~~~~~~~~~~~G~iDiLVnnAG~~ 96 (261)
T d1geea_ 71 DVINLVQSAIKEFGKLDVMINNAGLE 96 (261)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHhCCCCEeeccceec
Confidence 321 1125789999876554
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=90.96 E-value=0.55 Score=33.16 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=33.6
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHH
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~ 103 (221)
...+|.+||=+|||. |+.++..++ +|+ +|+++|. ++-++.+++
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~ 72 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA 72 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence 345788999999997 788887775 464 7999997 667777765
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=90.75 E-value=0.41 Score=33.31 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=60.2
Q ss_pred eEEEeCCCc-c-HHHHHHHHhCC--EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcccc
Q 027594 67 RVIELGAGC-G-VAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV 141 (221)
Q Consensus 67 ~vLelGcG~-G-~~~l~~a~~ga--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~ 141 (221)
+|+=+|||. | .++..+.+.|. +|++.|. ++.++.++++ +. +.... ... ....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~--------------~~~~~---~~~--~~~~ 59 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI--------------IDEGT---TSI--AKVE 59 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS--------------CSEEE---SCG--GGGG
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc--------------chhhh---hhh--hhhh
Confidence 577798875 3 35555656664 7999997 4566665542 21 11111 111 1112
Q ss_pred CCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEEEecChhHHHHHHHHHhcCC
Q 027594 142 APPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF 200 (221)
Q Consensus 142 ~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~~~r~~~~~~~~~~~~~~~f 200 (221)
....|+|+.+-+. .....++..+...++++..+.-+..... ...+.+.+.+...|
T Consensus 60 ~~~~dlIila~p~---~~~~~vl~~l~~~~~~~~ii~d~~s~k~-~~~~~~~~~~~~~~ 114 (171)
T d2g5ca2 60 DFSPDFVMLSSPV---RTFREIAKKLSYILSEDATVTDQGSVKG-KLVYDLENILGKRF 114 (171)
T ss_dssp GTCCSEEEECSCH---HHHHHHHHHHHHHSCTTCEEEECCSCCT-HHHHHHHHHHGGGE
T ss_pred ccccccccccCCc---hhhhhhhhhhhccccccccccccccccH-HHHHHHHHhhcccc
Confidence 3468999887553 4567788888888888876544333222 23344444444444
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.57 E-value=0.27 Score=35.54 Aligned_cols=43 Identities=30% Similarity=0.367 Sum_probs=34.0
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHh
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN 108 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n 108 (221)
++|-=||+|+ | -++..++..|.+|++.|. ++.++.+++.++.+
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~ 50 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEES 50 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHH
Confidence 5788899998 5 457777888999999997 56888887776654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=90.44 E-value=0.37 Score=33.50 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=52.8
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
++|.=||+|. | .++..+.+.|.+|++.|. ++.++.+++ ++. +.... ...+ .-
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~--------------~~~~~---~~~~----~~ 55 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQL--------------VDEAG---QDLS----LL 55 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTS--------------CSEEE---SCGG----GG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhc--------------cceee---eecc----cc
Confidence 3567788885 3 456666778999999997 445554432 221 11111 1111 13
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILL 179 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i 179 (221)
...|+|+.+=+ .+..+.+++.+...++++..+.-
T Consensus 56 ~~~DiIilavp---~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 56 QTAKIIFLCTP---IQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp TTCSEEEECSC---HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred cccccccccCc---Hhhhhhhhhhhhhhcccccceee
Confidence 57899987633 35577788888888888887644
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=90.34 E-value=0.43 Score=34.06 Aligned_cols=101 Identities=13% Similarity=-0.003 Sum_probs=51.8
Q ss_pred CCCCCCeEEEeCCCc---cHHHHHHHH-hCCEEEEe-cchhhHHHHHHHHHHhhhccccCCCCCCCCCce-EEEEEEecC
Q 027594 61 SKLKGKRVIELGAGC---GVAGFGMAL-LGCNVITT-DQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSI-QAVELDWGN 134 (221)
Q Consensus 61 ~~~~~~~vLelGcG~---G~~~l~~a~-~ga~v~~~-D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v-~~~~~dw~~ 134 (221)
...+|.+||=+.+|+ |..++.+|+ +|++|+++ ..++..+...+.+...+. +.+ .....++.+
T Consensus 25 ~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGa------------d~vi~~~~~~~~~ 92 (189)
T d1gu7a2 25 KLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGA------------TQVITEDQNNSRE 92 (189)
T ss_dssp CCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTC------------SEEEEHHHHHCGG
T ss_pred CCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccc------------cEEEeccccchhH
Confidence 345677888874333 566666665 59998775 333333333333334442 111 110011111
Q ss_pred CCC-c----cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 135 EDH-I----KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 135 ~~~-~----~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
... . ......+|+|+ |++- .+.+....++|+|+|+++..
T Consensus 93 ~~~~v~~~~~~~g~~vdvv~--D~vg-----~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 93 FGPTIKEWIKQSGGEAKLAL--NCVG-----GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp GHHHHHHHHHHHTCCEEEEE--ESSC-----HHHHHHHHHTSCTTCEEEEC
T ss_pred HHHHHHHHHhhccCCceEEE--ECCC-----cchhhhhhhhhcCCcEEEEE
Confidence 100 0 01245688888 4432 33446667889999998764
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=89.91 E-value=0.15 Score=38.48 Aligned_cols=80 Identities=21% Similarity=0.232 Sum_probs=53.3
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+.. ..++.+...|..+.+.
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~~~~~ 68 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--------------PDQIQFFQHDSSDEDG 68 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--------------TTTEEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC--------------CCcEEEEEccCCCHHH
Confidence 3689999999988874 45566778999999997 4555555544321 2467777777665543
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ..-.+.|+++.+--+.
T Consensus 69 v~~~~~~~~~~~G~iDiLVnnAg~~ 93 (251)
T d1zk4a1 69 WTKLFDATEKAFGPVSTLVNNAGIA 93 (251)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHHHHhCCceEEEeccccc
Confidence 21 1125789998876554
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=89.84 E-value=0.87 Score=33.79 Aligned_cols=78 Identities=19% Similarity=0.138 Sum_probs=49.4
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++||++|=.|++.|+ ++..+++.|++|++++.+ +.++.+. +.. ..++.+...|..+.+.
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~---~~~-------------~~~~~~~~~Dls~~~~ 65 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAV---AAL-------------EAEAIAVVADVSDPKA 65 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH---HTC-------------CSSEEEEECCTTSHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH---HHc-------------CCceEEEEecCCCHHH
Confidence 4689999999999875 344556779999999963 3333222 221 2456777777665543
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ..-.+.|+++.+-...
T Consensus 66 i~~~~~~i~~~~g~iDiLinnAg~~ 90 (241)
T d2a4ka1 66 VEAVFAEALEEFGRLHGVAHFAGVA 90 (241)
T ss_dssp HHHHHHHHHHHHSCCCEEEEGGGGT
T ss_pred HHHHHHHHHHHhCCccEeccccccc
Confidence 21 1125789998875443
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=89.80 E-value=0.36 Score=34.13 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=33.5
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHH
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR 103 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~ 103 (221)
...+|.+||=+|||. |+.++.+++ +|+ +|+++|. ++-++.+++
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~ 70 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE 70 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence 456889999999997 788887775 576 6999997 556777764
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=89.53 E-value=0.3 Score=36.59 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=49.4
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
+++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+. .++....+|..+.+.
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~----------------~~~~~~~~Dv~~~~~ 64 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG----------------ANGKGLMLNVTDPAS 64 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG----------------GGEEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC----------------CCCcEEEEEecCHHH
Confidence 3589999999988874 45556678999999997 445555443332 234555666554432
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ....+.|+++.+--..
T Consensus 65 v~~~~~~~~~~~g~iDilVnnAg~~ 89 (243)
T d1q7ba_ 65 IESVLEKIRAEFGEVDILVNNAGIT 89 (243)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCCCC
T ss_pred hhhhhhhhhcccCCcceehhhhhhc
Confidence 11 1235789998775443
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=89.23 E-value=0.99 Score=30.80 Aligned_cols=94 Identities=18% Similarity=0.083 Sum_probs=54.3
Q ss_pred CeEEEeCCCc-c-HHHHHHHHhCCEEEEecch-hhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCccccC
Q 027594 66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA 142 (221)
Q Consensus 66 ~~vLelGcG~-G-~~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~~~~ 142 (221)
+||+=+|+|. | .++..+++.|.+|++.+.. +-... .+.. .. ............ .....
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~------~~~~-----~~----~~~~~~~~~~~~----~~~~~ 61 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCS------VNLV-----ET----DGSIFNESLTAN----DPDFL 61 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEE------EEEE-----CT----TSCEEEEEEEES----CHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhh------hccc-----cC----Cccccccccccc----hhhhh
Confidence 4788899987 4 5677778889999999852 21000 0000 00 011111111111 11123
Q ss_pred CCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEEE
Q 027594 143 PPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLGY 181 (221)
Q Consensus 143 ~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~~ 181 (221)
..+|+|+.+=.- ...+..++.+..++.++..++.+.
T Consensus 62 ~~~D~iii~vka---~~~~~~~~~l~~~~~~~~~Iv~~q 97 (167)
T d1ks9a2 62 ATSDLLLVTLKA---WQVSDAVKSLASTLPVTTPILLIH 97 (167)
T ss_dssp HTCSEEEECSCG---GGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred cccceEEEeecc---cchHHHHHhhccccCcccEEeecc
Confidence 578999876433 347788888999998888766543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=88.98 E-value=0.55 Score=35.28 Aligned_cols=92 Identities=16% Similarity=0.067 Sum_probs=54.4
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEec-chhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTD-QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
+++||+||=-|++.|+ ++..+++.|++|++++ ..+-.+.+.+-...+. ..++.+...|......
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~d~~~~~~ 69 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINP------------KVNITFHTYDVTVPVA 69 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCT------------TSEEEEEECCTTSCHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCC------------CCCEEEEEeecCCCHH
Confidence 3689999999999885 4555567799977664 4332222222222221 2456666665543211
Q ss_pred -c-------cccCCCccEEEEcccccCCcCHHHHHH
Q 027594 138 -I-------KAVAPPFDYIIGTDVVYAEHLLEPLLQ 165 (221)
Q Consensus 138 -~-------~~~~~~fD~Vi~~d~~y~~~~~~~l~~ 165 (221)
. .....+.|+++.|--....+.++..++
T Consensus 70 ~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~ 105 (254)
T d1sbya1 70 ESKKLLKKIFDQLKTVDILINGAGILDDHQIERTIA 105 (254)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEeCCCCCCHHHHHHHHH
Confidence 1 111357899999887777776666433
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=88.96 E-value=0.39 Score=36.11 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=52.0
Q ss_pred CCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc-
Q 027594 65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK- 139 (221)
Q Consensus 65 ~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~- 139 (221)
||.+|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+.+...
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-------------~~~~~~~~Dvs~~~~v~~ 68 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-------------VEADGRTCDVRSVPEIEA 68 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeecCCHHHHHH
Confidence 5677888987764 45566778999999997 456666666665543 35777777766554321
Q ss_pred ------ccCCCccEEEEccccc
Q 027594 140 ------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 140 ------~~~~~fD~Vi~~d~~y 155 (221)
..-.+.|++|.|--+.
T Consensus 69 ~~~~~~~~~g~iDilVnnAG~~ 90 (257)
T d2rhca1 69 LVAAVVERYGPVDVLVNNAGRP 90 (257)
T ss_dssp HHHHHHHHTCSCSEEEECCCCC
T ss_pred HHHHHHHHhCCCCEEEeccccc
Confidence 1235789998775443
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=88.93 E-value=0.52 Score=33.09 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=55.0
Q ss_pred CCCCCCeEEEeCC-Cc-cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGc-G~-G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=.|+ |. |..++.+|+ .|++|++++. ++-.+.+++ .+. +.+ .+..+..
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa------------~~~----i~~~~~~ 83 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGA------------EEA----ATYAEVP 83 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTC------------SEE----EEGGGHH
T ss_pred CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----ccc------------cee----eehhhhh
Confidence 4558899999995 54 777777775 5999998885 545555443 231 111 1222211
Q ss_pred CccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 HIKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
........+|+|+- +.- +. +....++++|+|+++..
T Consensus 84 ~~~~~~~g~D~v~d--~~G--~~----~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 84 ERAKAWGGLDLVLE--VRG--KE----VEESLGLLAHGGRLVYI 119 (171)
T ss_dssp HHHHHTTSEEEEEE--CSC--TT----HHHHHTTEEEEEEEEEC
T ss_pred hhhhcccccccccc--ccc--hh----HHHHHHHHhcCCcEEEE
Confidence 11122467999984 321 22 34556789999998764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.90 E-value=0.48 Score=35.38 Aligned_cols=77 Identities=22% Similarity=0.341 Sum_probs=47.6
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
+++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+. . ..+....+|..+.+.
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~---~--------------~~~~~~~~Dv~~~~~ 64 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE---C--------------PGIEPVCVDLGDWDA 64 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---S--------------TTCEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---c--------------CCCeEEEEeCCCHHH
Confidence 3689999999988874 45556778999999996 3433333221 1 234556666655432
Q ss_pred cc---ccCCCccEEEEccccc
Q 027594 138 IK---AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~---~~~~~fD~Vi~~d~~y 155 (221)
.. ..-.+.|+++.+--+.
T Consensus 65 v~~~~~~~g~iDilVnnAg~~ 85 (242)
T d1cyda_ 65 TEKALGGIGPVDLLVNNAALV 85 (242)
T ss_dssp HHHHHTTCCCCSEEEECCCCC
T ss_pred HHHHHHHcCCCeEEEECCccc
Confidence 21 1235789998875443
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.88 E-value=0.19 Score=37.87 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=51.5
Q ss_pred CCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
..++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+. +++.+..+|..+.+
T Consensus 2 G~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~----------------~~~~~~~~Dv~~~~ 65 (244)
T d1nffa_ 2 GRLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA----------------DAARYVHLDVTQPA 65 (244)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG----------------GGEEEEECCTTCHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh----------------CcceEEEeecCCHH
Confidence 35689999999998874 45566778999999997 444444433221 24566676665543
Q ss_pred Ccc-------ccCCCccEEEEcccccC
Q 027594 137 HIK-------AVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 137 ~~~-------~~~~~fD~Vi~~d~~y~ 156 (221)
... ....+.|+++.+--+..
T Consensus 66 ~v~~~~~~~~~~~g~idilinnAG~~~ 92 (244)
T d1nffa_ 66 QWKAAVDTAVTAFGGLHVLVNNAGILN 92 (244)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHHHhCCCeEEEECCcccC
Confidence 321 11246899988765543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=88.15 E-value=0.37 Score=36.36 Aligned_cols=78 Identities=22% Similarity=0.163 Sum_probs=50.3
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
+++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+ +.+ .++.+..+|..+.+.
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~---~~~-------------~~~~~~~~Dv~~~~~ 65 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR---ELG-------------DAARYQHLDVTIEED 65 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TTG-------------GGEEEEECCTTCHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HhC-------------CceEEEEcccCCHHH
Confidence 4689999999999874 45566778999999997 443333222 211 356777777665433
Q ss_pred cc-------ccCCCccEEEEccccc
Q 027594 138 IK-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~-------~~~~~fD~Vi~~d~~y 155 (221)
.. ..-.+.|+++.+--+.
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAg~~ 90 (254)
T d1hdca_ 66 WQRVVAYAREEFGSVDGLVNNAGIS 90 (254)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHcCCccEEEecCccc
Confidence 21 1124789988875544
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=87.62 E-value=0.47 Score=35.48 Aligned_cols=81 Identities=16% Similarity=0.273 Sum_probs=50.8
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecchhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
.++||.+|=-|++.|+ ++..+++.|++|+++|..+. +.++..++..+ .++.....|..+....
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~-~~~~~~~~~~g-------------~~~~~~~~Dvs~~~~v 67 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA-PEAEAAIRNLG-------------RRVLTVKCDVSQPGDV 67 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC-HHHHHHHHHTT-------------CCEEEEECCTTCHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch-HHHHHHHHHcC-------------CcEEEEEeeCCCHHHH
Confidence 3689999999988774 45566778999999996321 12222233222 4677777776655432
Q ss_pred c-------ccCCCccEEEEcccccC
Q 027594 139 K-------AVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~y~ 156 (221)
. ..-.+.|+++.|--++.
T Consensus 68 ~~~~~~~~~~~G~iDilVnnAG~~~ 92 (247)
T d2ew8a1 68 EAFGKQVISTFGRCDILVNNAGIYP 92 (247)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCC
Confidence 1 11257899998755543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=87.54 E-value=0.72 Score=34.54 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=49.9
Q ss_pred eEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCcc---
Q 027594 67 RVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--- 139 (221)
Q Consensus 67 ~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~~--- 139 (221)
.+|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+.+...+ .++.+...|..+.+...
T Consensus 3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g-------------~~~~~~~~Dv~~~~~v~~~~ 69 (255)
T d1gega_ 3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-------------GHAVAVKVDVSDRDQVFAAV 69 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHHHHHHH
T ss_pred EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHHHHHH
Confidence 45777887764 45566778999999997 556666666665543 35677777766554321
Q ss_pred ----ccCCCccEEEEccccc
Q 027594 140 ----AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 140 ----~~~~~fD~Vi~~d~~y 155 (221)
..-.+.|+++.|--+.
T Consensus 70 ~~~~~~~g~iDilVnnAG~~ 89 (255)
T d1gega_ 70 EQARKTLGGFDVIVNNAGVA 89 (255)
T ss_dssp HHHHHHTTCCCEEEECCCCC
T ss_pred HHHHHHhCCccEEEeccccc
Confidence 1235789999775433
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.16 E-value=0.89 Score=33.79 Aligned_cols=77 Identities=26% Similarity=0.390 Sum_probs=48.2
Q ss_pred CCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCC
Q 027594 62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH 137 (221)
Q Consensus 62 ~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~ 137 (221)
.++||++|=-|++.|+ ++..+++.|++|+++|. ++.++.+.+. . ..+.....|..+.+.
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~---~--------------~~~~~~~~Dv~d~~~ 66 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE---C--------------PGIEPVCVDLGDWEA 66 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---S--------------TTCEEEECCTTCHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh---c--------------CCCeEEEEeCCCHHH
Confidence 3589999999998874 45566778999999997 3444433321 1 234555656554432
Q ss_pred cc---ccCCCccEEEEccccc
Q 027594 138 IK---AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 138 ~~---~~~~~fD~Vi~~d~~y 155 (221)
.. ..-.+.|+++.+-.+.
T Consensus 67 v~~~~~~~g~iDilVnnAg~~ 87 (244)
T d1pr9a_ 67 TERALGSVGPVDLLVNNAAVA 87 (244)
T ss_dssp HHHHHTTCCCCCEEEECCCCC
T ss_pred HHHHHHHhCCceEEEeccccc
Confidence 21 1235789998875544
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=87.03 E-value=1.2 Score=31.06 Aligned_cols=93 Identities=12% Similarity=0.072 Sum_probs=55.6
Q ss_pred CCCCCCeEEEeCCCc--cHHHHHHHH-hCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~--G~~~l~~a~-~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=.|+|. |..++.+|+ .|++|++++. ++-.+.+++ .+. + .+ .+..+.+
T Consensus 25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~----lGa------------~--~v--i~~~~~d 84 (179)
T d1qora2 25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGA------------W--QV--INYREED 84 (179)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTC------------S--EE--EETTTSC
T ss_pred CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh----cCC------------e--EE--EECCCCC
Confidence 345788999997665 667777765 5999999997 445566553 231 1 11 2222221
Q ss_pred Ccc-----ccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 HIK-----AVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~~~-----~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
... .....+|+|+-+ .-. +.+.....+++++|++++.
T Consensus 85 ~~~~v~~~t~g~g~d~v~d~--~g~-----~~~~~~~~~l~~~G~~v~~ 126 (179)
T d1qora2 85 LVERLKEITGGKKVRVVYDS--VGR-----DTWERSLDCLQRRGLMVSF 126 (179)
T ss_dssp HHHHHHHHTTTCCEEEEEEC--SCG-----GGHHHHHHTEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCeEEEEeC--ccH-----HHHHHHHHHHhcCCeeeec
Confidence 110 124678988743 221 2345667789999987664
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=86.97 E-value=0.67 Score=32.83 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=25.6
Q ss_pred CCCCCCeEEEeCCCccHHHH--HHHHhCC-EEEEecc-hhhHHHH
Q 027594 61 SKLKGKRVIELGAGCGVAGF--GMALLGC-NVITTDQ-IEVLPLL 101 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l--~~a~~ga-~v~~~D~-~~~l~~~ 101 (221)
.+.++++||=||||--.-++ ++++.|+ +++..+. ++.++.+
T Consensus 14 ~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~ 58 (182)
T d1vi2a1 14 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKA 58 (182)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHH
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHH
Confidence 45688999999999522233 3345676 5878775 4433333
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=86.97 E-value=0.67 Score=37.37 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=38.9
Q ss_pred CCCCeEEEeCCCccHHHHHHHHh----CCEEEEecc-hhhHHHHHHHHHHhhh
Q 027594 63 LKGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTS 110 (221)
Q Consensus 63 ~~~~~vLelGcG~G~~~l~~a~~----ga~v~~~D~-~~~l~~~~~n~~~n~~ 110 (221)
.++..++|+||=.|..+..+++. +.+|++.+- +...+.+++|+..|..
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 35679999999999888776542 358999996 7799999999998754
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=86.93 E-value=0.34 Score=37.07 Aligned_cols=110 Identities=9% Similarity=-0.032 Sum_probs=70.5
Q ss_pred CccHHHHHH--HHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecC-CCCccccCCCccEEE
Q 027594 74 GCGVAGFGM--ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-EDHIKAVAPPFDYII 149 (221)
Q Consensus 74 G~G~~~l~~--a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~-~~~~~~~~~~fD~Vi 149 (221)
-.|.+.++. .+..-+.++.|. ++-.+.+++|+.. ..++.+...|=-. ......+..+--+|+
T Consensus 90 YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~--------------~~~~~v~~~DG~~~l~allPP~~rRgLVL 155 (271)
T d2oo3a1 90 YPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--------------NKKVYVNHTDGVSKLNALLPPPEKRGLIF 155 (271)
T ss_dssp EECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--------------TSCEEEECSCHHHHHHHHCSCTTSCEEEE
T ss_pred CCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhcc--------------CCCceEEcCchHHHHHhhCCCCCCceEEE
Confidence 345555544 445667999997 7666666655432 2456665421000 000111233445777
Q ss_pred EcccccCCcCHHHHHHHHHHhcC--CCeEEEEEEEecChhHHHHHHHHHh
Q 027594 150 GTDVVYAEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWK 197 (221)
Q Consensus 150 ~~d~~y~~~~~~~l~~~~~~ll~--~~g~~~i~~~~r~~~~~~~~~~~~~ 197 (221)
..+++-..++...+++.+.+.++ |.|++.+-++.......+.|.+.++
T Consensus 156 IDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~~~~~~~~~l~ 205 (271)
T d2oo3a1 156 IDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMR 205 (271)
T ss_dssp ECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred ecCCcCCHHHHHHHHHHHHHHHHhCCCceEEEEeeccCcHHHHHHHHHHH
Confidence 66665567889999999999887 8999999999888777777776664
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=86.78 E-value=0.27 Score=30.92 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=25.2
Q ss_pred CCCCCeEEEeCCCc-cHH-HHHHHHhCCEEEEecc
Q 027594 62 KLKGKRVIELGAGC-GVA-GFGMALLGCNVITTDQ 94 (221)
Q Consensus 62 ~~~~~~vLelGcG~-G~~-~l~~a~~ga~v~~~D~ 94 (221)
+++|++|+=+|-|- |.- +-.+++.|++|++.|.
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~ 36 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDT 36 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeC
Confidence 46899999999884 643 3345567999999996
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.65 E-value=0.32 Score=31.01 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=26.4
Q ss_pred CCCCCCCeEEEeC-CCccHHH--HHHHHhCCEEEEecc
Q 027594 60 PSKLKGKRVIELG-AGCGVAG--FGMALLGCNVITTDQ 94 (221)
Q Consensus 60 ~~~~~~~~vLelG-cG~G~~~--l~~a~~ga~v~~~D~ 94 (221)
|...+.+++.=|| ||+|.-+ ..+..+|.+|++.|.
T Consensus 3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~ 40 (96)
T d1p3da1 3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDI 40 (96)
T ss_dssp CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEES
T ss_pred ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeC
Confidence 3455677898898 5567655 456678999999996
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=86.62 E-value=2 Score=29.81 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=25.0
Q ss_pred CCCCCCeEEEeCCCccHHHH--HHHHhCCEEEEecc
Q 027594 61 SKLKGKRVIELGAGCGVAGF--GMALLGCNVITTDQ 94 (221)
Q Consensus 61 ~~~~~~~vLelGcG~G~~~l--~~a~~ga~v~~~D~ 94 (221)
...+|++||=||||--.-++ +++.+|++++.+.-
T Consensus 14 ~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nR 49 (170)
T d1nyta1 14 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNR 49 (170)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccc
Confidence 45689999999999644333 34467889888875
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=86.49 E-value=1.4 Score=30.41 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=55.7
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHHH-hCC-EEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCC
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED 136 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a~-~ga-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~ 136 (221)
...+|.+||=.|||. |..++.+++ +|+ .|+++|. ++-++.+++ .+. -.++ +..+..
T Consensus 25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa--------------~~~i--~~~~~~ 84 (176)
T d2fzwa2 25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGA--------------TECI--NPQDFS 84 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTC--------------SEEE--CGGGCS
T ss_pred CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCC--------------cEEE--eCCchh
Confidence 455788999999985 566666654 576 5888886 446666653 332 1111 111111
Q ss_pred Cc------cccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEEEEE
Q 027594 137 HI------KAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTILLG 180 (221)
Q Consensus 137 ~~------~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~~i~ 180 (221)
.. ......+|+|+-+ .-...+++....++++++.+.+.
T Consensus 85 ~~~~~~~~~~~~~g~D~vid~------~G~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 85 KPIQEVLIEMTDGGVDYSFEC------IGNVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp SCHHHHHHHHTTSCBSEEEEC------SCCHHHHHHHHHTBCTTTCEEEE
T ss_pred hHHHHHHHHHcCCCCcEeeec------CCCHHHHHHHHHhhcCCceeEEE
Confidence 10 1124578999854 22346677788888888765543
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=86.41 E-value=0.29 Score=36.39 Aligned_cols=30 Identities=37% Similarity=0.646 Sum_probs=24.2
Q ss_pred CCeEEEeCCCc-cHH-HHHHHHhCCEEEEecc
Q 027594 65 GKRVIELGAGC-GVA-GFGMALLGCNVITTDQ 94 (221)
Q Consensus 65 ~~~vLelGcG~-G~~-~l~~a~~ga~v~~~D~ 94 (221)
+|||+=||+|. |+. +..|++.|.+|+..|-
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~ 32 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEA 32 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeC
Confidence 58999999997 653 5566788999999984
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.89 E-value=1.7 Score=33.31 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=29.0
Q ss_pred CCCCCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc
Q 027594 60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ 94 (221)
Q Consensus 60 ~~~~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~ 94 (221)
|-.++||++|=-|++.|+ ++..+++.|++|+++|.
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~ 39 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDL 39 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence 556799999999999984 56667788999999884
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.96 E-value=0.65 Score=35.11 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=49.5
Q ss_pred CCeE-EEeCCCccH---HHHHHHHh-CCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 65 GKRV-IELGAGCGV---AGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 65 ~~~v-LelGcG~G~---~~l~~a~~-ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
|++| |==|+..|+ ++..+++. |++|++++. .+.++.+.+.+...+ .++.+..+|..+.+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dvs~~~sv 68 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-------------LSPRFHQLDIDDLQSI 68 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-------------CCCEEEECCTTCHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEEecCCHHHH
Confidence 5677 666777764 34445665 889999986 456666666555443 3567777777665432
Q ss_pred c-------ccCCCccEEEEccccc
Q 027594 139 K-------AVAPPFDYIIGTDVVY 155 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~y 155 (221)
. ....+.|++|.|--+.
T Consensus 69 ~~~~~~~~~~~g~iDiLVnNAGi~ 92 (275)
T d1wmaa1 69 RALRDFLRKEYGGLDVLVNNAGIA 92 (275)
T ss_dssp HHHHHHHHHHHSSEEEEEECCCCC
T ss_pred HHHHHHHHHhcCCcEEEEEcCCcC
Confidence 1 1135799999886544
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=84.48 E-value=0.71 Score=32.94 Aligned_cols=103 Identities=15% Similarity=0.110 Sum_probs=56.6
Q ss_pred CeEEEeCCCc-cH-HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCC-----CCCceEEEEEEecCCCC
Q 027594 66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDH 137 (221)
Q Consensus 66 ~~vLelGcG~-G~-~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~~dw~~~~~ 137 (221)
++|-=||+|+ |. ++..++..|.+|++.|. ++.++.+...+..+............ ...++.... ....
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~ 80 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL----SYGD 80 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES----SSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccc----cccc
Confidence 4688899987 53 45566778999999997 56777776666543221100000000 001122211 1111
Q ss_pred ccccCCCccEEEEcccccCCcCHHHHHHHHHHhcCCCeEE
Q 027594 138 IKAVAPPFDYIIGTDVVYAEHLLEPLLQTIFALSGPKTTI 177 (221)
Q Consensus 138 ~~~~~~~fD~Vi~~d~~y~~~~~~~l~~~~~~ll~~~g~~ 177 (221)
-...|+|+-+ +..+.+.-..+++.+.+++.|+..+
T Consensus 81 ----~~~adlViEa-v~E~l~~K~~lf~~l~~~~~~~~Ii 115 (186)
T d1wdka3 81 ----FGNVDLVVEA-VVENPKVKQAVLAEVENHVREDAIL 115 (186)
T ss_dssp ----GGGCSEEEEC-CCSCHHHHHHHHHHHHTTSCTTCEE
T ss_pred ----ccccceeeee-ecchHHHHHHHHHHHHhhcCCCeeE
Confidence 2346788753 3344555666788888877776654
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=84.26 E-value=0.34 Score=30.50 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=20.2
Q ss_pred eEEEeC-CCccHHHH--HHHHhCCEEEEecch
Q 027594 67 RVIELG-AGCGVAGF--GMALLGCNVITTDQI 95 (221)
Q Consensus 67 ~vLelG-cG~G~~~l--~~a~~ga~v~~~D~~ 95 (221)
||-=+| ||+|.-++ .+..+|.+|++.|..
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~ 34 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIE 34 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 444556 56676554 456789999999973
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=84.06 E-value=0.63 Score=34.92 Aligned_cols=78 Identities=18% Similarity=0.262 Sum_probs=50.3
Q ss_pred CCCCeEEEeCCCccH---HHHHHHHhCCEEEEecc-hhhHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCCCCc
Q 027594 63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138 (221)
Q Consensus 63 ~~~~~vLelGcG~G~---~~l~~a~~ga~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~~~~ 138 (221)
++||++|=-|++.|+ ++..+++.|++|+++|. .+.++.+.+.+ + .++.....|..+.+..
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~-------------~~~~~~~~Dvt~~~~v 66 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---G-------------PAACAIALDVTDQASI 66 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C-------------TTEEEEECCTTCHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C-------------CceEEEEeeCCCHHHH
Confidence 478999999988874 45566778999999997 44444333221 2 3566667666554432
Q ss_pred c-------ccCCCccEEEEcccccC
Q 027594 139 K-------AVAPPFDYIIGTDVVYA 156 (221)
Q Consensus 139 ~-------~~~~~fD~Vi~~d~~y~ 156 (221)
. ....+.|+++.+--++.
T Consensus 67 ~~~~~~~~~~~g~iDilVnnAg~~~ 91 (256)
T d1k2wa_ 67 DRCVAELLDRWGSIDILVNNAALFD 91 (256)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCC
T ss_pred HHHHHHHHHHhCCccEEEeeccccc
Confidence 1 11257899998766553
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=83.72 E-value=2.8 Score=28.84 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=29.2
Q ss_pred CCCCCCeEEEeCCCc-cHHHHHHH-HhCC-EEEEecc-hhhHHHHH
Q 027594 61 SKLKGKRVIELGAGC-GVAGFGMA-LLGC-NVITTDQ-IEVLPLLK 102 (221)
Q Consensus 61 ~~~~~~~vLelGcG~-G~~~l~~a-~~ga-~v~~~D~-~~~l~~~~ 102 (221)
...+|.+||=+|||. |..++.++ ..++ +|+++|. ++-++.++
T Consensus 25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~ 70 (175)
T d1cdoa2 25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 70 (175)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence 455788999999998 55555444 4455 6999997 55566555
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=81.98 E-value=1.6 Score=32.17 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=33.8
Q ss_pred CCCCCeEEEeCCCc--cH---HHHHHHHhCCEEEEecch-hhHHHHHHHHHHh
Q 027594 62 KLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWN 108 (221)
Q Consensus 62 ~~~~~~vLelGcG~--G~---~~l~~a~~ga~v~~~D~~-~~l~~~~~n~~~n 108 (221)
.++||++|=-|++. |+ ++..+++.|++|+++|.+ +..+.+.+.....
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~ 54 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL 54 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhc
Confidence 45899999999755 64 566778889999999974 4566655544443
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=81.50 E-value=1.3 Score=32.45 Aligned_cols=42 Identities=0% Similarity=-0.079 Sum_probs=30.3
Q ss_pred cCCCccEEEEcccccCC--------------cCHHHHHHHHHHhcCCCeEEEEEEE
Q 027594 141 VAPPFDYIIGTDVVYAE--------------HLLEPLLQTIFALSGPKTTILLGYE 182 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~~--------------~~~~~l~~~~~~ll~~~g~~~i~~~ 182 (221)
+++++|+|+.++|+... +.+...+..+.++|+|+|.+++...
T Consensus 20 pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~ 75 (256)
T d1g60a_ 20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT 75 (256)
T ss_dssp CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC
Confidence 46789999998885321 1244577788899999999876544
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.30 E-value=0.4 Score=35.97 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=32.2
Q ss_pred cCCCccEEEEcccccC-----------CcCHHHHHHHHHHhcCCCeEEEEEEEe
Q 027594 141 VAPPFDYIIGTDVVYA-----------EHLLEPLLQTIFALSGPKTTILLGYEI 183 (221)
Q Consensus 141 ~~~~fD~Vi~~d~~y~-----------~~~~~~l~~~~~~ll~~~g~~~i~~~~ 183 (221)
+++++|+|+.++|+.. .+.....+..+.++|+|+|.+++....
T Consensus 20 ~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~ 73 (279)
T d1eg2a_ 20 PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL 73 (279)
T ss_dssp CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCc
Confidence 4678999999888542 122566778889999999999886543
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=80.17 E-value=0.78 Score=32.65 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=25.5
Q ss_pred CCCCeEEEeCCCc-cH-HHHHHHHhCCEEEEecc
Q 027594 63 LKGKRVIELGAGC-GV-AGFGMALLGCNVITTDQ 94 (221)
Q Consensus 63 ~~~~~vLelGcG~-G~-~~l~~a~~ga~v~~~D~ 94 (221)
.++++|+=+|+|. |+ .+..++++|.+|+..|-
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~ 74 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDA 74 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEec
Confidence 3568999999998 65 35566788999999984
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=80.03 E-value=2.2 Score=31.52 Aligned_cols=78 Identities=19% Similarity=0.280 Sum_probs=47.8
Q ss_pred CCCCCeEEEeCCC----ccH-HHHHHHHhCCEEEEecchh-hHHHHHHHHHHhhhccccCCCCCCCCCceEEEEEEecCC
Q 027594 62 KLKGKRVIELGAG----CGV-AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE 135 (221)
Q Consensus 62 ~~~~~~vLelGcG----~G~-~~l~~a~~ga~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~~dw~~~ 135 (221)
+++||++|=-|++ .|. ++..+++.|++|+++|.++ ..+.+++..... .+..+...|..+.
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~ 70 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL--------------GGALLFRADVTQD 70 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT--------------TCCEEEECCTTCH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhcc--------------CcccccccccCCH
Confidence 5789999999964 343 5666778899999998744 555554433332 2345556555544
Q ss_pred CCcc-------ccCCCccEEEEccc
Q 027594 136 DHIK-------AVAPPFDYIIGTDV 153 (221)
Q Consensus 136 ~~~~-------~~~~~fD~Vi~~d~ 153 (221)
+... ....+.|+++.+-.
T Consensus 71 ~~v~~~~~~~~~~~g~iDilVnnag 95 (256)
T d1ulua_ 71 EELDALFAGVKEAFGGLDYLVHAIA 95 (256)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCceEEEeccc
Confidence 3221 11257898886643
|