Citrus Sinensis ID: 027597

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQW
ccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccHHHccccccEEEccEEHHHHHcccccccccEEEHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccEEEEEEccEEEEEEccccccHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHcccc
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHccccccEcHHHHHHHHHHHcccccccccHHHHHHHHHHHccccccEEEEEEccEEEEEEccHHccHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHccccc
mrrrpgigglqSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHkndirknptfRSQFHEMCAKvgvdplasnkgFWAELLGIGDFYYELGVQIVEICLatrphnggliNLQELCNLLRQRRksnreavseDDCLRAISKLKVLGNGYEVISVGKkklvrsvptelnKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQW
mrrrpgigglqsaavardQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKsnreavseddclrAISKLkvlgngyevisvgkkklvrSVPTELNKDHNQILELaqaqgfvtvDEVERRLswtsgraidalDILLEVLQW
MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQW
**************VARDQYRLLGENVAKLRTDLMKEQLATFR******************TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQ**********EDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVL**
*RRRPGIGGLQS********************DLMKEQLATFRSQLEDFARKHK***R*NPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLL*************DDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQW
***********SAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQR*********EDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQW
****PGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQW
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEVLQW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query221 2.2.26 [Sep-21-2011]
Q5M759250 Vacuolar protein sorting- yes no 0.981 0.868 0.861 1e-110
Q5RJU0257 Vacuolar-sorting protein yes no 0.995 0.856 0.529 3e-62
Q5U3V9258 Vacuolar-sorting protein yes no 0.995 0.852 0.515 8e-60
Q9CZ28258 Vacuolar-sorting protein yes no 0.995 0.852 0.506 2e-59
Q5RK19258 Vacuolar-sorting protein yes no 0.995 0.852 0.506 2e-59
Q96H20258 Vacuolar-sorting protein yes no 0.995 0.852 0.506 3e-59
Q9LIJ4120 Putative vacuolar protein no no 0.529 0.975 0.820 3e-54
Q54RC4246 Vacuolar-sorting protein yes no 0.981 0.882 0.493 9e-51
O94663252 Vacuolar-sorting protein yes no 0.990 0.869 0.342 1e-36
Q12483233 Vacuolar-sorting protein yes no 0.764 0.725 0.368 3e-28
>sp|Q5M759|VP221_ARATH Vacuolar protein sorting-associated protein 22 homolog 1 OS=Arabidopsis thaliana GN=VP22-1 PE=2 SV=2 Back     alignment and function desciption
 Score =  398 bits (1023), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/217 (86%), Positives = 205/217 (94%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ AA ARDQYRLLGENVAKLRTD+MKEQL+TFRSQLE+FARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           P FR+QFHEMCA +GVDPLASNKGFWAELLGIGDFYYELGVQI+E+C+ TR HNGGLI+L
Sbjct: 61  PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELCN LRQRRK +REAV+EDDCLRAISKLKVLG+G+EVI++GKKKLVRSVPTELNKDHN
Sbjct: 121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180

Query: 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217
           QILELAQ QGFV V+EV+RRLSWTSGR IDAL+ LLE
Sbjct: 181 QILELAQGQGFVIVEEVQRRLSWTSGRVIDALETLLE 217
Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. The ESCRT-II complex is probably involved in the recruitment of the ESCRT-III complex.
Arabidopsis thaliana (taxid: 3702)
>sp|Q5RJU0|SNF8_XENTR Vacuolar-sorting protein SNF8 OS=Xenopus tropicalis GN=snf8 PE=2 SV=1 Back     alignment and function description
>sp|Q5U3V9|SNF8_DANRE Vacuolar-sorting protein SNF8 OS=Danio rerio GN=snf8 PE=2 SV=2 Back     alignment and function description
>sp|Q9CZ28|SNF8_MOUSE Vacuolar-sorting protein SNF8 OS=Mus musculus GN=Snf8 PE=2 SV=1 Back     alignment and function description
>sp|Q5RK19|SNF8_RAT Vacuolar-sorting protein SNF8 OS=Rattus norvegicus GN=Snf8 PE=1 SV=1 Back     alignment and function description
>sp|Q96H20|SNF8_HUMAN Vacuolar-sorting protein SNF8 OS=Homo sapiens GN=SNF8 PE=1 SV=1 Back     alignment and function description
>sp|Q9LIJ4|VP222_ARATH Putative vacuolar protein sorting-associated protein 22 homolog 2 OS=Arabidopsis thaliana GN=VP22-2 PE=5 SV=1 Back     alignment and function description
>sp|Q54RC4|SNF8_DICDI Vacuolar-sorting protein SNF8 OS=Dictyostelium discoideum GN=snf8 PE=3 SV=1 Back     alignment and function description
>sp|O94663|SNF8_SCHPO Vacuolar-sorting protein dot2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dot2 PE=3 SV=1 Back     alignment and function description
>sp|Q12483|SNF8_YEAST Vacuolar-sorting protein SNF8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNF8 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query221
255563947250 Vacuolar sorting protein SNF8, putative 0.981 0.868 0.935 1e-116
224126417249 predicted protein [Populus trichocarpa] 0.981 0.871 0.930 1e-115
357459547251 Vacuolar protein sorting-associated prot 0.981 0.864 0.907 1e-112
356527034250 PREDICTED: vacuolar protein sorting-asso 0.981 0.868 0.898 1e-112
449470437250 PREDICTED: vacuolar protein sorting-asso 0.981 0.868 0.884 1e-112
217074064251 unknown [Medicago truncatula] gi|3884922 0.981 0.864 0.903 1e-111
356567363250 PREDICTED: vacuolar protein sorting-asso 0.981 0.868 0.894 1e-111
225461026252 PREDICTED: vacuolar protein sorting-asso 0.981 0.861 0.894 1e-109
42567176250 ESCRT-II complex subunit VPS22 [Arabidop 0.981 0.868 0.861 1e-109
297799286250 hypothetical protein ARALYDRAFT_913844 [ 0.981 0.868 0.861 1e-109
>gi|255563947|ref|XP_002522973.1| Vacuolar sorting protein SNF8, putative [Ricinus communis] gi|223537785|gb|EEF39403.1| Vacuolar sorting protein SNF8, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 203/217 (93%), Positives = 213/217 (98%)

Query: 1   MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
           MRRRPGIGGLQ+AA ARDQYRLLGENVAKLRTDLMKEQL+TFRSQLE+FARKHKNDIRKN
Sbjct: 1   MRRRPGIGGLQTAAAARDQYRLLGENVAKLRTDLMKEQLSTFRSQLEEFARKHKNDIRKN 60

Query: 61  PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
           PTFR+QFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL
Sbjct: 61  PTFRAQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120

Query: 121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
           QELC LLRQ+RKS+R AVSEDDCLRAISKLK+LGNG+EVISVGKKKLVRSVPTELNKDHN
Sbjct: 121 QELCTLLRQKRKSDRGAVSEDDCLRAISKLKILGNGFEVISVGKKKLVRSVPTELNKDHN 180

Query: 181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217
           +ILELAQAQGFVTVDEVERRLSWTSGRAIDALD LL+
Sbjct: 181 EILELAQAQGFVTVDEVERRLSWTSGRAIDALDTLLD 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224126417|ref|XP_002319833.1| predicted protein [Populus trichocarpa] gi|222858209|gb|EEE95756.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357459547|ref|XP_003600054.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|355489102|gb|AES70305.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|356527034|ref|XP_003532119.1| PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449470437|ref|XP_004152923.1| PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1-like [Cucumis sativus] gi|449515265|ref|XP_004164670.1| PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|217074064|gb|ACJ85392.1| unknown [Medicago truncatula] gi|388492282|gb|AFK34207.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356567363|ref|XP_003551890.1| PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225461026|ref|XP_002281130.1| PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Vitis vinifera] gi|297737408|emb|CBI26609.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|42567176|ref|NP_194434.2| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|186514003|ref|NP_001119065.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|186514006|ref|NP_001119066.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|186514008|ref|NP_001119067.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|332278132|sp|Q5M759.2|VP221_ARATH RecName: Full=Vacuolar protein sorting-associated protein 22 homolog 1; Short=AtVPS22-1; AltName: Full=ESCRT-II complex subunit VPS22 homolog 1 gi|332659887|gb|AEE85287.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|332659888|gb|AEE85288.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|332659889|gb|AEE85289.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] gi|332659890|gb|AEE85290.1| ESCRT-II complex subunit VPS22 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297799286|ref|XP_002867527.1| hypothetical protein ARALYDRAFT_913844 [Arabidopsis lyrata subsp. lyrata] gi|297313363|gb|EFH43786.1| hypothetical protein ARALYDRAFT_913844 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query221
TAIR|locus:2116357250 VPS22 "AT4G27040" [Arabidopsis 0.981 0.868 0.861 4.4e-100
UNIPROTKB|E1BZH7258 SNF8 "Uncharacterized protein" 0.990 0.848 0.522 2.3e-55
ZFIN|ZDB-GENE-041114-117258 snf8 "SNF8, ESCRT-II complex s 0.995 0.852 0.515 2.3e-55
UNIPROTKB|Q96H20258 SNF8 "Vacuolar-sorting protein 0.995 0.852 0.506 4.8e-55
MGI|MGI:1343161258 Snf8 "SNF8, ESCRT-II complex s 0.995 0.852 0.506 4.8e-55
RGD|1310144258 Snf8 "SNF8, ESCRT-II complex s 0.995 0.852 0.506 4.8e-55
UNIPROTKB|I3L6X7258 SNF8 "Uncharacterized protein" 0.995 0.852 0.502 6.1e-55
UNIPROTKB|E2RTF6258 SNF8 "Uncharacterized protein" 0.995 0.852 0.502 9.9e-55
UNIPROTKB|Q08DR7258 SNF8 "Uncharacterized protein" 0.995 0.852 0.502 1.3e-54
WB|WBGene00016167269 vps-22 [Caenorhabditis elegans 0.995 0.817 0.461 2.2e-50
TAIR|locus:2116357 VPS22 "AT4G27040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 187/217 (86%), Positives = 205/217 (94%)

Query:     1 MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKN 60
             MRRRPGIGGLQ AA ARDQYRLLGENVAKLRTD+MKEQL+TFRSQLE+FARKHKNDIRKN
Sbjct:     1 MRRRPGIGGLQKAAAARDQYRLLGENVAKLRTDMMKEQLSTFRSQLEEFARKHKNDIRKN 60

Query:    61 PTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINL 120
             P FR+QFHEMCA +GVDPLASNKGFWAELLGIGDFYYELGVQI+E+C+ TR HNGGLI+L
Sbjct:    61 PAFRAQFHEMCANIGVDPLASNKGFWAELLGIGDFYYELGVQIIEVCMLTRSHNGGLISL 120

Query:   121 QELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHN 180
             QELCN LRQRRK +REAV+EDDCLRAISKLKVLG+G+EVI++GKKKLVRSVPTELNKDHN
Sbjct:   121 QELCNHLRQRRKKDREAVTEDDCLRAISKLKVLGSGFEVITIGKKKLVRSVPTELNKDHN 180

Query:   181 QILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217
             QILELAQ QGFV V+EV+RRLSWTSGR IDAL+ LLE
Sbjct:   181 QILELAQGQGFVIVEEVQRRLSWTSGRVIDALETLLE 217
GO:0003674 "molecular_function" evidence=ND
GO:0005737 "cytoplasm" evidence=ISM
GO:0016192 "vesicle-mediated transport" evidence=ISS
GO:0000814 "ESCRT II complex" evidence=ISS
UNIPROTKB|E1BZH7 SNF8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-117 snf8 "SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q96H20 SNF8 "Vacuolar-sorting protein SNF8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1343161 Snf8 "SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310144 Snf8 "SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3L6X7 SNF8 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RTF6 SNF8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DR7 SNF8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
WB|WBGene00016167 vps-22 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9CZ28SNF8_MOUSENo assigned EC number0.50670.99540.8527yesno
O94663SNF8_SCHPONo assigned EC number0.34220.99090.8690yesno
Q5RK19SNF8_RATNo assigned EC number0.50670.99540.8527yesno
Q96H20SNF8_HUMANNo assigned EC number0.50670.99540.8527yesno
Q5U3V9SNF8_DANRENo assigned EC number0.51580.99540.8527yesno
Q5RJU0SNF8_XENTRNo assigned EC number0.52940.99540.8560yesno
Q54RC4SNF8_DICDINo assigned EC number0.49310.98190.8821yesno
Q5M759VP221_ARATHNo assigned EC number0.86170.98190.868yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
pfam04157219 pfam04157, EAP30, EAP30/Vps36 family 3e-64
>gnl|CDD|217934 pfam04157, EAP30, EAP30/Vps36 family Back     alignment and domain information 
 Score =  197 bits (504), Expect = 3e-64
 Identities = 97/214 (45%), Positives = 139/214 (64%), Gaps = 5/214 (2%)

Query: 6   GIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRS 65
           GI G++ +   + +Y  LG  +A    + + +Q   F   LE FA+KHK++I+ NP FR+
Sbjct: 2   GIAGIERSREEQRKYNDLGLQLAFEDLEALMKQAKDFVELLESFAKKHKSEIKANPEFRA 61

Query: 66  QFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCN 125
           QF  MCA +GVDPLAS KG  + L G+GDFYYEL VQIVEICLAT   NGG+I+LQ+L  
Sbjct: 62  QFQSMCASLGVDPLASKKG--SVLGGVGDFYYELAVQIVEICLATLKENGGIISLQDLYA 119

Query: 126 LLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGK-KKLVRSVP-TELNKDHNQIL 183
           L   R +   E VS +D L+A  KL+ LG G++++ +G    +V+SVP +EL++D  +IL
Sbjct: 120 LY-NRARGGTELVSPEDLLKACKKLEKLGLGFKLVKIGSGVLVVQSVPKSELSEDQTKIL 178

Query: 184 ELAQAQGFVTVDEVERRLSWTSGRAIDALDILLE 217
           ELA+  G VT  E+  +L W+ GRA + L+   +
Sbjct: 179 ELAEELGGVTASELAEKLGWSIGRAKEVLEKAEK 212

This family includes EAP30 as well as the Vps36 protein. Vps36 is involved in Golgi to endosome trafficking. EAP30 is a subunit of the ELL complex. The ELL is an 80-kDa RNA polymerase II transcription factor. ELL interacts with three other proteins to form the complex known as ELL complex. The ELL complex is capable of increasing that catalytic rate of transcription elongation, but is unable to repress initiation of transcription by RNA polymerase II as is the case of ELL. EAP30 is thought to lead to the derepression of ELL's transcriptional inhibitory activity. Length = 219

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 221
KOG3341249 consensus RNA polymerase II transcription factor c 100.0
PF04157223 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP 100.0
KOG2760432 consensus Vacuolar sorting protein VPS36 [Intracel 99.96
PRK00135188 scpB segregation and condensation protein B; Revie 95.89
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 95.27
PF05158 327 RNA_pol_Rpc34: RNA polymerase Rpc34 subunit; Inter 94.77
PF09743 272 DUF2042: Uncharacterized conserved protein (DUF204 93.1
PF0901269 FeoC: FeoC like transcriptional regulator; InterPr 92.45
PF0197868 TrmB: Sugar-specific transcriptional regulator Trm 92.01
PF04079159 DUF387: Putative transcriptional regulators (Ypuh- 91.55
TIGR02147 271 Fsuc_second hypothetical protein, TIGR02147. This 90.66
PLN03083 803 E3 UFM1-protein ligase 1 homolog; Provisional 90.6
PF0822057 HTH_DeoR: DeoR-like helix-turn-helix domain; Inter 90.29
TIGR00281186 segregation and condensation protein B. Shown to b 89.64
PRK10512614 selenocysteinyl-tRNA-specific translation factor; 88.85
cd08767126 Cdt1_c The C-terminal fold of replication licensin 88.12
smart0042053 HTH_DEOR helix_turn_helix, Deoxyribose operon repr 87.86
PRK15466166 carboxysome structural protein EutK; Provisional 86.04
PLN02180 639 gamma-glutamyl transpeptidase 4 85.97
PLN02198 573 glutathione gamma-glutamylcysteinyltransferase 85.59
PF0104759 MarR: MarR family; InterPro: IPR000835 The MarR-ty 85.16
PF1232477 HTH_15: Helix-turn-helix domain of alkylmercury ly 85.08
PF09756188 DDRGK: DDRGK domain; InterPro: IPR019153 This is a 84.77
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 84.59
PF0496753 HTH_10: HTH DNA binding domain; InterPro: IPR00705 84.48
TIGR00066 516 g_glut_trans gamma-glutamyltranspeptidase. Also ca 83.17
cd0502988 S-100A6 S-100A6: S-100A6 domain found in proteins 83.14
PF08784102 RPA_C: Replication protein A C terminal; InterPro: 82.96
smart0041866 HTH_ARSR helix_turn_helix, Arsenical Resistance Op 82.1
PF06163127 DUF977: Bacterial protein of unknown function (DUF 81.41
PF01019 510 G_glu_transpept: Gamma-glutamyltranspeptidase; Int 81.17
PF0470362 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A. 81.01
PF0172665 LexA_DNA_bind: LexA DNA binding domain; InterPro: 80.75
smart00347101 HTH_MARR helix_turn_helix multiple antibiotic resi 80.34
>KOG3341 consensus RNA polymerase II transcription factor complex subunit [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=6.5e-84  Score=548.76  Aligned_cols=217  Identities=61%  Similarity=1.015  Sum_probs=214.6

Q ss_pred             CCCCcchhHhhccHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCC
Q 027597            1 MRRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA   80 (221)
Q Consensus         1 mrR~~Gi~ai~~~~~~~~~~~~~g~~l~~~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~   80 (221)
                      ||||+|++||++++ +..+|++.|++++++|+.+|++||++|+++|++||+||+.||++||+||++|+.||++||||||+
T Consensus         1 ~rrrvG~gAi~~~k-~~~ky~~~g~~l~e~Ql~q~~~Ql~~f~~~LeeFA~kH~~ei~knsqFR~~Fq~Mca~IGvDPla   79 (249)
T KOG3341|consen    1 MRRRVGLGAIQKKK-AAKKYKEVGTELAEQQLVQMSKQLEVFQEALEEFARKHKTEIRKNSQFRNQFQEMCASIGVDPLA   79 (249)
T ss_pred             CccchhhhHHhhHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCCccc
Confidence            89999999999987 88999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCccchHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEE
Q 027597           81 SNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVI  160 (221)
Q Consensus        81 s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi  160 (221)
                      ++||||++++|+|||||||+|||||||++|.+.|||+|++.||++++.+.|+..++.||+||++|||++|++||+||+|+
T Consensus        80 s~kgfw~~~lgvgdFYYelgVqviEvC~at~~~nGGlislqel~~~l~~~R~~~~e~vt~dD~lrAi~kLk~LG~gFev~  159 (249)
T KOG3341|consen   80 SGKGFWAELLGVGDFYYELGVQVIEVCLATKHTNGGLISLQELCNHLLQRRKKDHEAVTEDDLLRAIDKLKVLGSGFEVI  159 (249)
T ss_pred             cCcchHHHHhhhHHHHHHHhhHHHHHHHHhhcccCCeeeHHHHHHHHHHHhcccchhccHHHHHHHHHHhhccCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             EeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597          161 SVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV  218 (221)
Q Consensus       161 ~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~  218 (221)
                      +|||+++|||||.|||+||+.|||+|+..||||.+.|.++|+|+..||.+|||+||+|
T Consensus       160 ~iggK~~vrSVP~ELn~Dht~ILela~~~gyvt~s~l~~~l~We~~Ra~qaLe~lv~e  217 (249)
T KOG3341|consen  160 KIGGKKLVRSVPTELNMDHTVILELAEILGYVTISLLKANLGWERSRAIQALEHLVKE  217 (249)
T ss_pred             EecCEEeeecCcchhcccHHHHHHHHHhcCceeHHHHHHhccchHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999987

>PF04157 EAP30: EAP30/Vps36 family; InterPro: IPR007286 EAP30 is a subunit of the ELL complex Back     alignment and domain information
>KOG2760 consensus Vacuolar sorting protein VPS36 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK00135 scpB segregation and condensation protein B; Reviewed Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF05158 RNA_pol_Rpc34: RNA polymerase Rpc34 subunit; InterPro: IPR007832 The family comprises a subunit specific to RNA Pol III, the tRNA specific polymerase Back     alignment and domain information
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms Back     alignment and domain information
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif Back     alignment and domain information
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis Back     alignment and domain information
>PF04079 DUF387: Putative transcriptional regulators (Ypuh-like); InterPro: IPR005234 This family represents ScpB, which along with ScpA (IPR003768 from INTERPRO) interacts with SMC in vivo forming a complex that is required for chromosome condensation and segregation [, ] Back     alignment and domain information
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147 Back     alignment and domain information
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional Back     alignment and domain information
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>TIGR00281 segregation and condensation protein B Back     alignment and domain information
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional Back     alignment and domain information
>cd08767 Cdt1_c The C-terminal fold of replication licensing factor Cdt1 is essential for Cdt1 activity and directly interacts with MCM2-7 helicase Back     alignment and domain information
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor Back     alignment and domain information
>PRK15466 carboxysome structural protein EutK; Provisional Back     alignment and domain information
>PLN02180 gamma-glutamyl transpeptidase 4 Back     alignment and domain information
>PLN02198 glutathione gamma-glutamylcysteinyltransferase Back     alignment and domain information
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance Back     alignment and domain information
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4 Back     alignment and domain information
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif Back     alignment and domain information
>TIGR00066 g_glut_trans gamma-glutamyltranspeptidase Back     alignment and domain information
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6 Back     alignment and domain information
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A) Back     alignment and domain information
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor Back     alignment and domain information
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function Back     alignment and domain information
>PF01019 G_glu_transpept: Gamma-glutamyltranspeptidase; InterPro: IPR000101 Gamma-glutamyltranspeptidase (2 Back     alignment and domain information
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A Back     alignment and domain information
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria Back     alignment and domain information
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
2zme_A258 Integrated Structural And Functional Model Of The H 2e-60
3cuq_A234 Integrated Structural And Functional Model Of The H 7e-58
1u5t_A233 Structure Of The Escrt-Ii Endosomal Trafficking Com 2e-29
>pdb|2ZME|A Chain A, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 258 Back     alignment and structure 
Iteration: 1

 Score =  228 bits (581), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/221 (50%), Positives = 150/221 (67%), Gaps = 1/221 (0%)
Query: 2   RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNP 61
           RR  G G +    +A  +Y+  G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP
Sbjct: 3   RRGVGAGAIAKKKLAEAKYKERGTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNP 62
Query: 62  TFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQ 121
            FR QF +MCA +GVDPLAS KGFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+
Sbjct: 63  EFRVQFQDMCATIGVDPLASGKGFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLE 122
Query: 122 ELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQ 181
           EL   + + R    + VS+DD +RAI KLK LG G+ +I VG   L++SVP ELN DH  
Sbjct: 123 ELHQQVLKGRGKFAQDVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTV 182
Query: 182 ILELAQAQGFVTVDEVERRLSWTSGRAIDALDILL-EVLQW 221
           +L+LA+  G+VTV E++  L W + RA   L+ LL E L W
Sbjct: 183 VLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAW 223
>pdb|3CUQ|A Chain A, Integrated Structural And Functional Model Of The Human Escrt-Ii Complex Length = 234 Back     alignment and structure
>pdb|1U5T|A Chain A, Structure Of The Escrt-Ii Endosomal Trafficking Complex Length = 233 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
3cuq_A234 Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nu 1e-98
1u5t_A233 Appears to BE functionally related to SNF7; SNF8P; 1e-95
1w7p_D566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 3e-23
3cuq_B218 Vacuolar protein-sorting-associated protein 36; ES 6e-19
1u5t_B169 Defective in vacuolar protein sorting; VPS36P; ESC 3e-16
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A Length = 234 Back     alignment and structure
 Score =  285 bits (730), Expect = 1e-98
 Identities = 106/199 (53%), Positives = 140/199 (70%), Gaps = 1/199 (0%)

Query: 24  GENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNK 83
           G  +A+ +   M +QL  F++ LE+FA KHK +IRKNP FR QF +MCA +GVDPLAS K
Sbjct: 1   GTVLAEDQLAQMSKQLDMFKTNLEEFASKHKQEIRKNPEFRVQFQDMCATIGVDPLASGK 60

Query: 84  GFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDC 143
           GFW+E+LG+GDFYYELGVQI+E+CLA +  NGGLI L+EL   + + R    + VS+DD 
Sbjct: 61  GFWSEMLGVGDFYYELGVQIIEVCLALKHRNGGLITLEELHQQVLKGRGKFAQDVSQDDL 120

Query: 144 LRAISKLKVLGNGYEVISVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSW 203
           +RAI KLK LG G+ +I VG   L++SVP ELN DH  +L+LA+  G+VTV E++  L W
Sbjct: 121 IRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQLAEKNGYVTVSEIKASLKW 180

Query: 204 TSGRAIDALDILL-EVLQW 221
            + RA   L+ LL E L W
Sbjct: 181 ETERARQVLEHLLKEGLAW 199
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A Length = 233 Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 566 Back     alignment and structure
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B Length = 218 Back     alignment and structure
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Length = 169 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query221
1u5t_A233 Appears to BE functionally related to SNF7; SNF8P; 100.0
3cuq_A234 Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nu 100.0
3cuq_B218 Vacuolar protein-sorting-associated protein 36; ES 100.0
1w7p_D566 VPS36P, YLR417W; ESCRT-II complex, endosomal prote 100.0
1u5t_B169 Defective in vacuolar protein sorting; VPS36P; ESC 99.97
2pjp_A121 Selenocysteine-specific elongation factor; SELB, p 94.34
1t6s_A162 Conserved hypothetical protein; A winged helix-tur 93.94
2z99_A219 Putative uncharacterized protein; winged helix dom 93.63
3i71_A68 Ethanolamine utilization protein EUTK; helix-turn- 93.59
1lva_A258 Selenocysteine-specific elongation factor; winged- 92.95
1xn7_A78 Hypothetical protein YHGG; alpha+beta, GFT structu 91.26
3i5g_C159 Myosin catalytic light chain LC-1, mantle muscle; 90.5
2heo_A67 Z-DNA binding protein 1; protein DLM1-Z-DNA comple 89.63
2k02_A87 Ferrous iron transport protein C; FEOC, iron-sulfu 89.2
2lmt_A148 Calmodulin-related protein 97A; spermatogenesis, m 89.13
1qgp_A77 Protein (double stranded RNA adenosine deaminase); 88.65
2ovk_B153 RLC, myosin regulatory light chain LC-2, mantle mu 87.9
2xvc_A59 ESCRT-III, SSO0910; cell cycle, cell division, cyt 86.59
2mys_C149 Myosin; muscle protein, motor protein; HET: MLY; 2 86.08
3bpv_A138 Transcriptional regulator; MARR, DNA binding, tran 85.7
2htj_A81 P fimbrial regulatory protein KS71A; winged helix- 85.53
3tgn_A146 ADC operon repressor ADCR; helix-turn-helix, trans 85.4
3fwb_A161 Cell division control protein 31; gene gating, com 84.77
3g3z_A145 NMB1585, transcriptional regulator, MARR family; t 84.67
3nrv_A148 Putative transcriptional regulator (MARR/EMRR FAM; 84.12
1wdc_C156 Scallop myosin; calcium binding protein, muscle pr 83.83
2fbh_A146 Transcriptional regulator PA3341; MARR, transcript 83.77
2qac_A146 Myosin A tail domain interacting protein MTIP; mal 83.44
3j04_B143 Myosin regulatory light chain 2, smooth muscle MA 83.35
1sfx_A109 Conserved hypothetical protein AF2008; structural 83.17
1jgs_A138 Multiple antibiotic resistance protein MARR; trans 82.66
2nnn_A140 Probable transcriptional regulator; structural gen 82.21
1tbx_A99 ORF F-93, hypothetical 11.0 kDa protein; sulfolobu 82.18
2obh_A143 Centrin-2; DNA repair complex EF hand superfamily 82.09
2gxg_A146 146AA long hypothetical transcriptional regulator; 82.06
3bdd_A142 Regulatory protein MARR; putative multiple antibio 81.95
2ovk_C159 Myosin catalytic light chain LC-1, mantle muscle, 81.93
2ia0_A 171 Putative HTH-type transcriptional regulator PF086; 81.9
3i5g_B153 Myosin regulatory light chain LC-2, mantle muscle; 81.87
3eco_A139 MEPR; mutlidrug efflux pump regulator winged helix 81.66
3oop_A143 LIN2960 protein; protein structure initiative, PSI 81.63
2rdp_A150 Putative transcriptional regulator MARR; PFAM PF01 81.51
2pex_A153 Transcriptional regulator OHRR; transcription regu 81.27
1top_A162 Troponin C; contractIle system protein; 1.78A {Gal 81.02
1z91_A147 Organic hydroperoxide resistance transcriptional; 80.8
4hbl_A149 Transcriptional regulator, MARR family; HTH, trans 80.56
3lmm_A583 Uncharacterized protein; multi-domained alpha-beta 80.32
1lj9_A144 Transcriptional regulator SLYA; HTH DNA binding pr 80.31
2hr3_A147 Probable transcriptional regulator; MCSG, structur 80.18
3bro_A141 Transcriptional regulator; helix_TURN_helix, multi 80.12
1qbj_A81 Protein (double-stranded RNA specific adenosine D 80.05
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A Back     alignment and structure
Probab=100.00  E-value=1.6e-79  Score=532.63  Aligned_cols=207  Identities=31%  Similarity=0.644  Sum_probs=185.4

Q ss_pred             CCCcchhHhhccHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCC-
Q 027597            2 RRRPGIGGLQSAAVARDQYRLLGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLA-   80 (221)
Q Consensus         2 rR~~Gi~ai~~~~~~~~~~~~~g~~l~~~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~-   80 (221)
                      |||+||+||+  ++++++|+++|.+++++|+++|++||++||++|++||++|++||++||+||++|++||++||||||+ 
T Consensus         1 rr~~G~~a~~--~~~~~~~~~~g~~l~~~~~~~l~~Ql~~F~~~L~~FA~kHk~eI~~dp~fR~~F~~mc~siGVDPLa~   78 (233)
T 1u5t_A            1 MKQFGLAAFD--ELKDGKYNDVNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSL   78 (233)
T ss_dssp             ---------------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             CCCccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccCHHHHHHHHHHHHHcCCCCCcc
Confidence            6889999999  7889999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCCccccccCccchHHHHHHHHHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEE
Q 027597           81 SNKGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVI  160 (221)
Q Consensus        81 s~k~~ws~~lG~gdfy~eLavqIvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi  160 (221)
                      |+||  +++||+|||||||||||||||++||++|||||+|+||+|+|+|+     +.||||||+|||++|++| +||+++
T Consensus        79 s~kg--~~~lg~gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~-----~~IS~dDi~rAik~L~~L-~gf~v~  150 (233)
T 1u5t_A           79 FDRD--KHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRK-----LNVGLDDLEKSIDMLKSL-ECFEIF  150 (233)
T ss_dssp             TTSS--GGGTTHHHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTT-----TTCCHHHHHHHHHHHTTT-CCCCEE
T ss_pred             CCcc--ccccCcchHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhh-----cCCCHHHHHHHHHHhhhc-cCeEEE
Confidence            9999  89999999999999999999999999999999999999999997     689999999999999999 999999


Q ss_pred             EeCCEEEEEecCcccchhHHHHHHHHHhcCCccHHHHHHhcCCCHHHHHHHHHHHHHH
Q 027597          161 SVGKKKLVRSVPTELNKDHNQILELAQAQGFVTVDEVERRLSWTSGRAIDALDILLEV  218 (221)
Q Consensus       161 ~i~~~~~v~Svp~Els~D~~~vlel~~~~G~vt~~~L~~~l~W~~~Ra~~~L~~l~~~  218 (221)
                      +++|++||||||.|||+||+.||++|+..||||+++|++++||++.||+.+|++|+++
T Consensus       151 ~v~g~~~vqsvp~el~~D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~  208 (233)
T 1u5t_A          151 QIRGKKFLRSVPNELTSDQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVAN  208 (233)
T ss_dssp             EETTEEEECCSSSCCCTTHHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHT
T ss_pred             EECCEEEEEeCCCccchHHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999986
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A Back     alignment and structure
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B Back     alignment and structure
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 Back     alignment and structure
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli} Back     alignment and structure
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60 Back     alignment and structure
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis} Back     alignment and structure
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli} Back     alignment and structure
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A Back     alignment and structure
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62 Back     alignment and structure
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C Back     alignment and structure
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A Back     alignment and structure
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} Back     alignment and structure
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A Back     alignment and structure
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 Back     alignment and structure
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus} Back     alignment and structure
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C* Back     alignment and structure
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A* Back     alignment and structure
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73 Back     alignment and structure
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae} Back     alignment and structure
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A Back     alignment and structure
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B} Back     alignment and structure
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP} Back     alignment and structure
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ... Back     alignment and structure
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A Back     alignment and structure
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus} Back     alignment and structure
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50 Back     alignment and structure
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28 Back     alignment and structure
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 Back     alignment and structure
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A Back     alignment and structure
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A Back     alignment and structure
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis} Back     alignment and structure
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus} Back     alignment and structure
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B Back     alignment and structure
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 Back     alignment and structure
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua} Back     alignment and structure
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus} Back     alignment and structure
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A Back     alignment and structure
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ... Back     alignment and structure
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A* Back     alignment and structure
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis} Back     alignment and structure
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae} Back     alignment and structure
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28 Back     alignment and structure
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28 Back     alignment and structure
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28 Back     alignment and structure
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 221
d1u5ta1145 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 3e-72
d1u5ta268 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 8e-13
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 145 Back     information, alignment and structure

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar sorting protein SNF8
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  214 bits (546), Expect = 3e-72
 Identities = 51/152 (33%), Positives = 92/152 (60%), Gaps = 7/152 (4%)

Query: 23  LGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASN 82
           + + + + ++  +++QL  F+ +L +FA+KH ++++ +P FRS+F  MC+ +G+DPL+  
Sbjct: 1   VNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLF 60

Query: 83  KGFWAELLGIGDFYYELGVQIVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDD 142
                 L  + DFYYE+ ++++EIC  T+  NGG+I+ QEL  +  ++       V  DD
Sbjct: 61  DR-DKHLFTVNDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLN-----VGLDD 114

Query: 143 CLRAISKLKVLGNGYEVISVGKKKLVRSVPTE 174
             ++I  LK L   +E+  +  KK +RSVP E
Sbjct: 115 LEKSIDMLKSLE-CFEIFQIRGKKFLRSVPNE 145
>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 68 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query221
d1u5ta1145 Vacuolar sorting protein SNF8 {Baker's yeast (Sacc 100.0
d1u5tb194 Vacuolar protein sorting-associated protein VPS36 99.61
d1u5ta268 Vacuolar sorting protein SNF8 {Baker's yeast (Sacc 99.46
d1wdcc_152 Myosin Regulatory Chain {Bay scallop (Aequipecten 92.07
d1t6sa185 Segregation and condensation protein B, ScpB {Chlo 91.16
d1s6la160 Alkylmercury lyase MerB {Escherichia coli [TaxId: 89.18
d1sfxa_109 Hypothetical protein AF2008 {Archaeoglobus fulgidu 87.98
d1jhfa171 LexA repressor, N-terminal DNA-binding domain {Esc 87.59
d1dpua_69 C-terminal domain of RPA32 {Human (Homo sapiens) [ 85.96
d1wdcb_142 Myosin Essential Chain {Bay scallop (Aequipecten i 85.81
d1biaa163 Biotin repressor, N-terminal domain {Escherichia c 85.37
d1i1ga160 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 84.04
d2mysb_145 Myosin Essential Chain {Chicken (Gallus gallus) [T 83.97
d1ggwa_140 Cdc4p {Fission yeast (Schizosaccharomyces pombe) [ 82.2
d1lkja_146 Calmodulin {Baker's yeast (Saccharomyces cerevisia 82.0
d2mysc_145 Myosin Regulatory Chain {Chicken (Gallus gallus) [ 81.25
d1jgsa_138 Multiple antibiotic resistance repressor, MarR {Es 80.45
d1z91a1137 Organic hydroperoxide resistance transcriptional r 80.44
d2cfxa163 Transcriptional regulator LrpC {Bacillus subtilis 80.28
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Vacuolar sorting protein domain
domain: Vacuolar sorting protein SNF8
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-64  Score=407.97  Aligned_cols=145  Identities=35%  Similarity=0.672  Sum_probs=138.2

Q ss_pred             hcHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHcCCCCCCCCCCccccccCccchHHHHHHH
Q 027597           23 LGENVAKLRTDLMKEQLATFRSQLEDFARKHKNDIRKNPTFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYELGVQ  102 (221)
Q Consensus        23 ~g~~l~~~~~~~l~~ql~~F~~~L~~Fa~kh~~eI~~dp~fR~~F~~mC~siGVDPL~s~k~~ws~~lG~gdfy~eLavq  102 (221)
                      +|.+|.++|+++|++||++||++|++||++|++||++||+||++|++||++||||||++++++| ++||+||||||||||
T Consensus         1 l~~~l~e~q~~ql~~QL~vF~~~L~~FA~kH~~eI~~np~FR~~F~~MC~~iGVDPLas~~~~~-~~lg~gDFYyEL~Vq   79 (145)
T d1u5ta1           1 VNKTILEKQSVELRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLFDRDK-HLFTVNDFYYEVCLK   79 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCHHHHHHHHHHHHHHTCCHHHHTTSSG-GGTTHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHhCCChhhcCCCcc-ccccccchHHHHHHH
Confidence            4789999999999999999999999999999999999999999999999999999999999955 599999999999999


Q ss_pred             HHHHhhhhcccCCCcccHHHHHHHHHhhcCCCCCCCCHHHHHHHHhhccccCCCeEEEEeCCEEEEEecCcc
Q 027597          103 IVEICLATRPHNGGLINLQELCNLLRQRRKSNREAVSEDDCLRAISKLKVLGNGYEVISVGKKKLVRSVPTE  174 (221)
Q Consensus       103 IvevC~~tr~~nGGli~l~el~~~v~k~Rg~~~~~IS~~DI~rAi~~L~~LG~g~~vi~i~~~~~v~Svp~E  174 (221)
                      |||||++||++|||||+|+||.+++.|.+     .||+|||+|||++|++|| ||+|+++||++||||||.|
T Consensus        80 IvEvC~~tr~~NGGli~l~el~~~~~~~~-----~is~dDi~rAi~~L~~Lg-G~~v~~iggk~~v~SVP~E  145 (145)
T d1u5ta1          80 VIEICRQTKDMNGGVISFQELEKVHFRKL-----NVGLDDLEKSIDMLKSLE-CFEIFQIRGKKFLRSVPNE  145 (145)
T ss_dssp             HHHHHHHHTTTSSSCEEHHHHHHTTTTTT-----TCCHHHHHHHHHHHTTTC-CCCEEEETTEEEECCSSSC
T ss_pred             HHHHHHHhhhcCCCEeEHHHHHHHHHhhc-----CCCHHHHHHHHHhhcccC-CcEEEEECCEEEEEeCCCC
Confidence            99999999999999999999998877654     499999999999999996 9999999999999999987
>d1u5tb1 a.4.5.54 (B:396-489) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u5ta2 a.4.5.54 (A:165-232) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wdcc_ a.39.1.5 (C:) Myosin Regulatory Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wdcb_ a.39.1.5 (B:) Myosin Essential Chain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2mysb_ a.39.1.5 (B:) Myosin Essential Chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ggwa_ a.39.1.5 (A:) Cdc4p {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1lkja_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2mysc_ a.39.1.5 (C:) Myosin Regulatory Chain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure