Citrus Sinensis ID: 027616

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MHPLPSICKLKDKKKQHKKSKKYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKQKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYLKFPWAQVEDYE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHEcHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccEEEEEccccccccccHHHcEEEccccccccccccHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mhplpsicklkdkkkQHKKSKKYRAaemsssfgihslkalpslsstrcvtkssplciickhkpntkpaklnkqkltgTTQKAIDCfdekksslgIQAGAVLLATLeqpalavtgennheIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFfpglllwapflnfrklprdpsmkapwdtpadpskvknaylkfpwaqvedye
Flexible Loop (DISEMBL)
mhplpsicklkdkkkqhKKSKKYraaemsssfgihslkalpslssTRCVTKSSPlciickhkpntkpaklnkqkltgTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKApwdtpadpskvknAYLKFPwaqvedye
Low Complexity Region (SEG)
MHPLPSICklkdkkkqhkkskkYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKQKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLfemyvqfmfvfmffPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYLKFPWAQVEDYE
Disordered region (IsUnstruct)
**********************************************RCVTKSSPLCIICKH******************QKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKL*********************AYLKFPWA******
Disordered Region (DISOPRED)
****PSI*********************SSSFGIHSLKAL***************************************************SLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPR***************KVKNAYLKFPWA******
Disordered Region (DISEMBL)
MHPLPSICKL****************EMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKQKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYLKFPWAQVEDYE
Disordered Region (DISPRO)
**PLPSICKLKDKKKQHKK*KKYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKQKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYLKFPWAQV****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHPLPSICKLKDKKKQHKKSKKYRAAEMSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKQKLTGTTQKAIDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAYLKFPWAQVEDYE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q8DKZ3	76	NAD(P)H-quinone oxidoredu	yes	no	0.271	0.789	0.466	2e-07
B2J0I9	70	NAD(P)H-quinone oxidoredu	yes	no	0.298	0.942	0.402	9e-07
Q8YMW5	70	NAD(P)H-quinone oxidoredu	yes	no	0.239	0.757	0.415	1e-06
Q3MBD4	70	NAD(P)H-quinone oxidoredu	yes	no	0.239	0.757	0.433	2e-06
Q7V2B1	77	NAD(P)H-quinone oxidoredu	yes	no	0.248	0.714	0.446	1e-05
Q7V897	83	NAD(P)H-quinone oxidoredu	no	no	0.298	0.795	0.348	3e-05
A2CAP6	83	NAD(P)H-quinone oxidoredu	no	no	0.221	0.590	0.428	6e-05
Q3AKY6	83	NAD(P)H-quinone oxidoredu	yes	no	0.289	0.771	0.343	7e-05
Q3AYG7	83	NAD(P)H-quinone oxidoredu	yes	no	0.271	0.722	0.35	0.0001
Q8KX34	77	NAD(P)H-quinone oxidoredu	yes	no	0.244	0.701	0.444	0.0001

>sp|Q8DKZ3|NDHL_THEEB NAD(P)H-quinone oxidoreductase subunit L OS=Thermosynechococcus elongatus (strain BP-1) GN=ndhL PE=1 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 35/60 (58%)

Query: 130 GIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRD 189
           G +A  Y L++P I+  +L  RWY    FE    +  V  FFPGLLL APF+NFR  PR 
Sbjct: 14  GALAGLYLLVVPAIVYAYLNARWYVASSFERAFMYFLVTFFFPGLLLLAPFINFRPQPRS 73

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)
EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: -

>sp|B2J0I9|NDHL_NOSP7 NAD(P)H-quinone oxidoreductase subunit L OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndhL PE=3 SV=1

 Score = 53.9 bits (128), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 122 LTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFL 181
           + VAL+ + I+A  Y L++P  ++ +L+ RWY     E  + +  VF FFPGLL+ +PF 
Sbjct: 1   MIVALLYL-ILAGAYLLVIPIAVLFYLKQRWYVASSIERLLMYFLVFFFFPGLLVLSPFA 59

Query: 182 NFRKLPR 188
           NFR   R
Sbjct: 60  NFRPQRR 66

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Nostoc punctiforme (strain ATCC 29133 / PCC 73102) (taxid: 63737)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8YMW5|NDHL_NOSS1 NAD(P)H-quinone oxidoreductase subunit L OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=ndhL PE=3 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPR 188
           Y L++P  ++ +L++RWY     E    +  VF+FFPGLL+ +PF+N R  PR
Sbjct: 14  YLLVVPVALLFYLKLRWYVVSSIERTFMYFLVFLFFPGLLVLSPFVNLRPRPR 66

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q3MBD4|NDHL_ANAVT NAD(P)H-quinone oxidoreductase subunit L OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndhL PE=3 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPR 188
           Y L++P  +M +L+ RWY     E    +  VF+FFPGLL+ +PF+N R  PR
Sbjct: 14  YLLVVPVALMFYLKQRWYVVSSVERTFMYFLVFLFFPGLLVLSPFVNLRPRPR 66

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q7V2B1|NDHL_PROMP NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndhL PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 129 VGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
           VGI++  Y L++P I+  W+  RW     FE  + +  VF+FFPGL+L++PFLN R
Sbjct: 16  VGIVSI-YLLVIPLILFYWMNNRWNVMGKFERLIVYGLVFLFFPGLILFSPFLNLR 70

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) (taxid: 59919)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q7V897|NDHL_PROMM NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus (strain MIT 9313) GN=ndhL PE=3 SV=2

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 119 EIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWA 178
            I+  + L    ++   Y +++P ++ +W+  RW+    FE    +  VF+FFPGL+L+A
Sbjct: 11  SINSLMVLAAYALLGGLYLIVVPLLLYSWMNRRWHCMGKFERLSAYGLVFLFFPGLILFA 70

Query: 179 PFLNFR 184
           PFLN R
Sbjct: 71  PFLNLR 76

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Prochlorococcus marinus (strain MIT 9313) (taxid: 74547)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|A2CAP6|NDHL_PROM3 NAD(P)H-quinone oxidoreductase subunit L OS=Prochlorococcus marinus (strain MIT 9303) GN=ndhL PE=3 SV=2

 Score = 47.8 bits (112), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 33/49 (67%)

Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
           Y +++P ++ +W+  RW+    FE    +  VF+FFPGL+L+APFLN R
Sbjct: 28  YLIVVPLLLYSWMNRRWHCMGKFERLSAYGMVFLFFPGLILFAPFLNLR 76

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Prochlorococcus marinus (strain MIT 9303) (taxid: 59922)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q3AKY6|NDHL_SYNSC NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain CC9605) GN=ndhL PE=3 SV=1

 Score = 47.8 bits (112), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%)

Query: 121 DLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPF 180
           D  + L+   ++   Y +++P  +  W+  RW++    E    +  VF FFPG++L+APF
Sbjct: 13  DTLLVLLAYTVLGGLYLVVVPLALYAWMNQRWHRMGKLERLGIYGMVFFFFPGMILFAPF 72

Query: 181 LNFR 184
           LNFR
Sbjct: 73  LNFR 76

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus sp. (strain CC9605) (taxid: 110662)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q3AYG7|NDHL_SYNS9 NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain CC9902) GN=ndhL PE=3 SV=1

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 36/60 (60%)

Query: 125 ALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFR 184
            L+  G +   Y + +P  +  W+ +RWY+   FE    +  VF+FFPG++++APF+N R
Sbjct: 17  VLLAYGAVLGTYLIAVPLALYAWINLRWYRMSKFERLGVYGLVFLFFPGMIVFAPFINLR 76

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus sp. (strain CC9902) (taxid: 316279)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

>sp|Q8KX34|NDHL_SYNP2 NAD(P)H-quinone oxidoreductase subunit L OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhL PE=3 SV=1

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 136 YFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRD 189
           Y L++P  +  +L  RWY     E  V + FVF  FPG+LL +PFLNFR   R+
Sbjct: 23  YLLVLPAGLYFYLNNRWYVASSIERLVMYFFVFFLFPGMLLLSPFLNFRPRRRE 76

NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.

Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) (taxid: 32049)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
225424301	188	PREDICTED: uncharacterized protein LOC10	0.850	1.0	0.587	1e-57
297838891	191	hypothetical protein ARALYDRAFT_894894 [	0.837	0.968	0.578	2e-56
255573740	187	conserved hypothetical protein [Ricinus	0.846	1.0	0.603	3e-56
110739481	187	hypothetical protein [Arabidopsis thalia	0.832	0.983	0.580	4e-56
15223241	191	inorganic carbon transport protein-relat	0.832	0.963	0.580	5e-56
195606680	192	hypothetical protein [Zea mays]	0.832	0.958	0.590	3e-52
224108305	187	predicted protein [Populus trichocarpa]	0.837	0.989	0.571	9e-52
449464794	201	PREDICTED: uncharacterized protein LOC10	0.832	0.915	0.567	4e-50
351722379	195	uncharacterized protein LOC100526956 [Gl	0.850	0.964	0.517	1e-45
388519383	193	unknown [Lotus japonicus]	0.868	0.994	0.525	6e-41

>gi|225424301|ref|XP_002284666.1| PREDICTED: uncharacterized protein LOC100259429 [Vitis vinifera] gi|297737670|emb|CBI26871.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/194 (58%), Positives = 140/194 (72%), Gaps = 6/194 (3%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKQKLTGTTQKAIDCFD 87
           MS SF I   KALP L  ++C   S  +  I K   + KP K     +T   +K++D   
Sbjct: 1   MSCSFSIQIPKALPCLFHSQCKFPSLSISSIQKQSHHAKPIK----TITSIIKKSVDYIS 56

Query: 88  EKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNW 147
             K SL IQ GA LLAT+E+PA AVTG N  E+DL   LI++GI+ FWYFLIMPPIIMNW
Sbjct: 57  TNKHSLAIQVGA-LLATVEKPAFAVTGVNK-EVDLIWVLIQLGIVLFWYFLIMPPIIMNW 114

Query: 148 LRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKN 207
           LR+RWY+R L EMY+QFMFVFMFFPG++LWAPFLNFRK PRDPSMK PW TP +P++VKN
Sbjct: 115 LRIRWYERNLLEMYLQFMFVFMFFPGVMLWAPFLNFRKFPRDPSMKYPWSTPQNPTQVKN 174

Query: 208 AYLKFPWAQVEDYE 221
           A+LK+P+A+ EDY 
Sbjct: 175 AFLKYPFAKPEDYR 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838891|ref|XP_002887327.1| hypothetical protein ARALYDRAFT_894894 [Arabidopsis lyrata subsp. lyrata] gi|297333168|gb|EFH63586.1| hypothetical protein ARALYDRAFT_894894 [Arabidopsis lyrata subsp. lyrata]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 111/192 (57%), Positives = 136/192 (70%), Gaps = 7/192 (3%)

Query: 30  SSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKQKLTGTTQKAIDCFDEK 89
            S G+++  ALPSLS  +  +  SPLC+    KPN          +     KA D F  K
Sbjct: 5   GSLGLYAPNALPSLS-LKPRSVKSPLCVTSYSKPNDTLL----HNVAKIRAKAGDLFGAK 59

Query: 90  KSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLR 149
           K+ L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWLR
Sbjct: 60  KTVLAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWLR 117

Query: 150 VRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNAY 209
           VRWY+RK FEMY+QFMFVFMFFPGLLLWAPFLNFRK PRDPSMK PWD P DP  +KN Y
Sbjct: 118 VRWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPSMKNPWDKPTDPDSIKNNY 177

Query: 210 LKFPWAQVEDYE 221
           LK+P+A  EDY+
Sbjct: 178 LKYPFATPEDYD 189

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573740|ref|XP_002527791.1| conserved hypothetical protein [Ricinus communis] gi|223532826|gb|EEF34601.1| conserved hypothetical protein [Ricinus communis]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 140/194 (72%), Gaps = 7/194 (3%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKQKLTGTTQKAIDCFD 87
           MS S   H  +ALPSLS  R   + +P  I  K+KP    +KL+K K++   +      D
Sbjct: 1   MSCSLSFHIPQALPSLSPHR---RKAPFYISSKYKP-VHNSKLDK-KVSSIRRSPEGYND 55

Query: 88  EKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNW 147
            KK SL +Q GA   AT+EQ ALAVTG NN E DLT  LI+  I+AFWYFLIMPPIIMNW
Sbjct: 56  VKKFSLAVQLGA-FFATVEQSALAVTGVNNEE-DLTWVLIQSAIVAFWYFLIMPPIIMNW 113

Query: 148 LRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKN 207
           +RVRWY+RKLFEMY+QFMF F+FFPG+LLWAPFLNFRK PRDPSMK PW TP +PS++KN
Sbjct: 114 MRVRWYRRKLFEMYLQFMFTFIFFPGILLWAPFLNFRKFPRDPSMKYPWSTPENPSQIKN 173

Query: 208 AYLKFPWAQVEDYE 221
            Y KFP+A  EDY+
Sbjct: 174 DYAKFPYATPEDYD 187

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110739481|dbj|BAF01650.1| hypothetical protein [Arabidopsis thaliana]

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 138/193 (71%), Gaps = 9/193 (4%)

Query: 30  SSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPN-TKPAKLNKQKLTGTTQKAIDCFDE 88
            S G+++  ALPSLS  +  +  SP CI    KPN T    +NK +      KA D    
Sbjct: 1   GSLGLYAPNALPSLS-LKPRSVKSPFCITSHTKPNDTLLHNVNKMR-----AKACDILGA 54

Query: 89  KKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWL 148
           KK+ L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWL
Sbjct: 55  KKTILAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWL 112

Query: 149 RVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNA 208
           RVRWY+RK FEMY+QFMFVFMFFPGLLLWAPFLNFRK PRDP+MK PWD P DP  +KN 
Sbjct: 113 RVRWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNV 172

Query: 209 YLKFPWAQVEDYE 221
           YLK+P+A  EDY+
Sbjct: 173 YLKYPYATPEDYD 185

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223241|ref|NP_177233.1| inorganic carbon transport protein-related protein [Arabidopsis thaliana] gi|12324754|gb|AAG52336.1|AC011663_15 unknown protein; 17323-16389 [Arabidopsis thaliana] gi|37202090|gb|AAQ89660.1| At1g70760 [Arabidopsis thaliana] gi|332196990|gb|AEE35111.1| inorganic carbon transport protein-related protein [Arabidopsis thaliana]

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 138/193 (71%), Gaps = 9/193 (4%)

Query: 30  SSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPN-TKPAKLNKQKLTGTTQKAIDCFDE 88
            S G+++  ALPSLS  +  +  SP CI    KPN T    +NK +      KA D    
Sbjct: 5   GSLGLYAPNALPSLS-LKPRSVKSPFCITSHTKPNDTLLHNVNKMR-----AKACDILGA 58

Query: 89  KKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWL 148
           KK+ L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWL
Sbjct: 59  KKTILAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWL 116

Query: 149 RVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNA 208
           RVRWY+RK FEMY+QFMFVFMFFPGLLLWAPFLNFRK PRDP+MK PWD P DP  +KN 
Sbjct: 117 RVRWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNV 176

Query: 209 YLKFPWAQVEDYE 221
           YLK+P+A  EDY+
Sbjct: 177 YLKYPYATPEDYD 189

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195606680|gb|ACG25170.1| hypothetical protein [Zea mays]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 114/193 (59%), Positives = 135/193 (69%), Gaps = 9/193 (4%)

Query: 31  SFGIHSLKALPSLSSTRCVTKSSPLCIICKHKP--NTKPAKLNKQKLTGTTQKAIDCFDE 88
           S G+ +  AL SLSST    K+ PL I    KP  NT     N  K+     KA D F  
Sbjct: 6   SLGLCAPNAL-SLSSTPRSVKA-PLSITSHTKPISNTDSLLHNIAKMRA---KAGDFFGA 60

Query: 89  KKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWL 148
           KK+    Q G VL AT++ PALA+TG N HE +L+  ++ + II+ WYFL+MPPIIMNWL
Sbjct: 61  KKTIFAAQLGTVL-ATIDHPALAITGVN-HEQELSSVVLDISIISVWYFLVMPPIIMNWL 118

Query: 149 RVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNA 208
           RVRWY+RK FEMY+QFM VFMFFPGLLLWAPFLNFRK PRDPSMK PWD P DPS +KN 
Sbjct: 119 RVRWYRRKFFEMYLQFMCVFMFFPGLLLWAPFLNFRKFPRDPSMKYPWDKPKDPSTIKNG 178

Query: 209 YLKFPWAQVEDYE 221
           YLK+P+AQ EDY+
Sbjct: 179 YLKYPFAQPEDYD 191

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108305|ref|XP_002314797.1| predicted protein [Populus trichocarpa] gi|222863837|gb|EEF00968.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (531), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 112/196 (57%), Positives = 135/196 (68%), Gaps = 11/196 (5%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKP--NTKPAKLNKQKLTGTTQKAIDC 85
           MS  F   S KALP+LSS R   + + LC   K+KP  NTK  K    K T   +K  D 
Sbjct: 1   MSYCFSFQSPKALPTLSSQR---RRTSLCTTAKYKPFHNTKLVK----KATSVNRKPEDH 53

Query: 86  FDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIM 145
              KKSSL IQ  A LLAT+EQPA A+TG NN E DLT  LI++ I+ F YF++MPPII 
Sbjct: 54  DQAKKSSLAIQFAA-LLATIEQPAFAITGVNNPE-DLTSILIQLAIVTFCYFILMPPIIF 111

Query: 146 NWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKV 205
           NWL  R Y+RKL E Y+QFM +F+FFPG+LLWAPFLNFRK PRDPS++ PW  P DPSK+
Sbjct: 112 NWLWKRLYRRKLLETYLQFMCIFIFFPGILLWAPFLNFRKFPRDPSLQYPWSKPEDPSKI 171

Query: 206 KNAYLKFPWAQVEDYE 221
           KN YL++PWA  EDY+
Sbjct: 172 KNDYLRYPWATPEDYD 187

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464794|ref|XP_004150114.1| PREDICTED: uncharacterized protein LOC101218173 [Cucumis sativus] gi|449519300|ref|XP_004166673.1| PREDICTED: uncharacterized protein LOC101224267 [Cucumis sativus]

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 110/194 (56%), Positives = 142/194 (73%), Gaps = 10/194 (5%)

Query: 34  IHSLKALPSLSSTRCVTKS--SPLCIICKHKPNTKPAKLNKQ--KLTGTTQKA--IDCFD 87
           +H  KALPSLSS++ +  S  SP  +   H  N  P+  N +  K+ G+ ++   I    
Sbjct: 11  LHIPKALPSLSSSKTLFPSLYSPFKL---HNFNILPSNSNPKNFKIVGSIKEEDPIGYLH 67

Query: 88  EKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNW 147
           +KK+SL +   A  LAT+ +PA AVTGENNHE+ LT  L ++G+I F+YFL+ PPIIMNW
Sbjct: 68  KKKTSLALHL-AAFLATVGEPASAVTGENNHEVPLTWVLAQLGVIGFFYFLVFPPIIMNW 126

Query: 148 LRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKN 207
           LR+RWY+R L EMY+QFM VF+FFPG+LLWAPFLNFRK PRDPSMK PW TP DPSK+KN
Sbjct: 127 LRIRWYRRNLLEMYLQFMCVFLFFPGILLWAPFLNFRKFPRDPSMKYPWSTPQDPSKIKN 186

Query: 208 AYLKFPWAQVEDYE 221
           AYLK+P+A+ EDY+
Sbjct: 187 AYLKYPFAKPEDYD 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722379|ref|NP_001236474.1| uncharacterized protein LOC100526956 [Glycine max] gi|255631246|gb|ACU15990.1| unknown [Glycine max]

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/199 (51%), Positives = 136/199 (68%), Gaps = 11/199 (5%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKP---NTKPAKLNKQKLTGTTQKA-- 82
           MS +F +H  KALP L S+   T S  L    KHK    NT P++    ++T ++QK+  
Sbjct: 1   MSFTFNLHVPKALPPLPSSSRGTTS--LFFSSKHKSYHNNTSPSQ--SLRITCSSQKSNH 56

Query: 83  IDCFDEKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPP 142
            D    K +SL +Q G VLLA  EQP LAVTGENN   +L   L + G++ F YFL++PP
Sbjct: 57  DDDGSLKYTSLALQIG-VLLALAEQPVLAVTGENNRP-ELLWVLTQWGVVLFGYFLVVPP 114

Query: 143 IIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADP 202
           IIM WL  RWY+R L EMY+QFM VF+FFPG++LWAPFLNFRK PRDPS++ PW  P DP
Sbjct: 115 IIMYWLWKRWYRRNLLEMYLQFMCVFIFFPGVILWAPFLNFRKFPRDPSLQYPWSVPEDP 174

Query: 203 SKVKNAYLKFPWAQVEDYE 221
           SK++++Y K+P+A+ EDY+
Sbjct: 175 SKIRSSYAKYPYAEPEDYD 193

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519383|gb|AFK47753.1| unknown [Lotus japonicus]

 Score =  173 bits (438), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 102/194 (52%), Positives = 127/194 (65%), Gaps = 2/194 (1%)

Query: 28  MSSSFGIHSLKALPSLSSTRCVTKSSPLCIICKHKPNTKPAKLNKQKLTGTTQKAIDCFD 87
           MS SF +H  KALP + ++   T S       K   N      +   +   +QK  D   
Sbjct: 1   MSFSFSLHVPKALPPIPTSPWGTASLFTASKQKSSLNNTSHSQSLHIVACCSQKTNDYLS 60

Query: 88  EKKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNW 147
            KK SL +  GA LLA  E PALAVTGEN H  +L   LI++GI+ F+YF+  PPII+NW
Sbjct: 61  IKKPSLALHIGA-LLALAEHPALAVTGEN-HPQELFGVLIQLGIVLFFYFIATPPIIINW 118

Query: 148 LRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKN 207
           +  RWY+R L EMY QFMFVF+FFPG+LLWAPFLNFRK PRDPSMK PW  P DPS++KN
Sbjct: 119 IWRRWYRRNLVEMYFQFMFVFIFFPGVLLWAPFLNFRKFPRDPSMKYPWSIPEDPSRIKN 178

Query: 208 AYLKFPWAQVEDYE 221
           AY K+P+A+ EDY+
Sbjct: 179 AYYKYPYAEPEDYD 192

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2013925	191	NdhL "NADH dehydrogenase-like	0.823	0.952	0.523	8.8e-47

TAIR|locus:2013925 NdhL "NADH dehydrogenase-like complex L" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 101/193 (52%), Positives = 124/193 (64%)

Query:    31 SFGIHSLKALPSLS-STRCVTKSSPLCIICKHKPN-TKPAKLNKQKLTGTTQKAIDCFDE 88
             S G+++  ALPSLS   R V   SP CI    KPN T    +NK +      KA D    
Sbjct:     6 SLGLYAPNALPSLSLKPRSV--KSPFCITSHTKPNDTLLHNVNKMRA-----KACDILGA 58

Query:    89 KKSSLGIQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWL 148
             KK+ L  Q GAVL AT++ PALA+TG NN + +L+  ++ +GII+ WYFL+MPPIIMNWL
Sbjct:    59 KKTILAAQLGAVL-ATIDHPALAITGVNNQQ-ELSSVVLDIGIISVWYFLVMPPIIMNWL 116

Query:   149 RVRWYKRKLXXXXXXXXXXXXXXPGLLLWAPFLNFRKLPRDPSMKAPWDTPADPSKVKNA 208
             RVRWY+RK               PGLLLWAPFLNFRK PRDP+MK PWD P DP  +KN 
Sbjct:   117 RVRWYRRKFFEMYLQFMFVFMFFPGLLLWAPFLNFRKFPRDPNMKNPWDKPTDPDSIKNV 176

Query:   209 YLKFPWAQVEDYE 221
             YLK+P+A  EDY+
Sbjct:   177 YLKYPYATPEDYD 189


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      221       193   0.00098  110 3  11 22  0.44    32
                                                     31  0.43    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  183 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.63u 0.20s 16.83t   Elapsed:  00:00:01
  Total cpu time:  16.63u 0.20s 16.83t   Elapsed:  00:00:01
  Start:  Sat May 11 01:30:45 2013   End:  Sat May 11 01:30:46 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0016655 "oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=TAS

GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=ISS;NAS

GO:0042651 "thylakoid membrane" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.6.5	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
pfam10716	77	pfam10716, NdhL, NADH dehydrogenase transmembrane	1e-29

>gnl|CDD|220858 pfam10716, NdhL, NADH dehydrogenase transmembrane subunit

 Score =  105 bits (263), Expect = 1e-29
 Identities = 28/65 (43%), Positives = 40/65 (61%)

Query: 126 LIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGLLLWAPFLNFRK 185
           L+  G +A  Y L++P I+  W+  RWY    FE  + +  VF+FFPG++L+APFLNFR 
Sbjct: 13  LLAYGALAGLYLLVVPLILYFWMNKRWYVMSKFERLLMYGLVFLFFPGMILFAPFLNFRP 72

Query: 186 LPRDP 190
             R  
Sbjct: 73  SGRGE 77

The NdhL family is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyze the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits. Length = 77

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PF10716	81	NdhL: NADH dehydrogenase transmembrane subunit; In	100.0

>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane

Probab=100.00  E-value=1.7e-40  Score=251.40  Aligned_cols=81  Identities=43%  Similarity=0.874  Sum_probs=77.8

Q ss_pred             hhHHHHHHHhhcCCceeeecccCCchhHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhh
Q 027616           95 IQAGAVLLATLEQPALAVTGENNHEIDLTVALIKVGIIAFWYFLIMPPIIMNWLRVRWYKRKLFEMYVQFMFVFMFFPGL  174 (221)
Q Consensus        95 lq~Ga~llA~~e~PAlAvtg~~n~~~D~l~Vll~Y~~La~~YLLVvP~~ly~wLn~RWy~~~~~ER~~mY~LVF~FFPGl  174 (221)
                      .||||++ +++             ++|+++|+++|++++|+||+|+|+++|+|||+|||+||++||++||||||+|||||
T Consensus         1 m~~~~l~-~~i-------------~~~~l~vl~~y~~l~~~YLlVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~FFPGl   66 (81)
T PF10716_consen    1 MQCGALL-SSI-------------PSDTLLVLLAYAALAGLYLLVVPLILYFWMNKRWYVMSSFERLFMYFLVFLFFPGL   66 (81)
T ss_pred             CcHHHHH-HHc-------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3899999 655             78999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhccCcccCCCC
Q 027616          175 LLWAPFLNFRKLPRD  189 (221)
Q Consensus       175 lL~APFLNFR~~pR~  189 (221)
                      +|||||+|||++|||
T Consensus        67 lL~aPFlNfR~~~r~   81 (81)
T PF10716_consen   67 LLLAPFLNFRPKPRQ   81 (81)
T ss_pred             HHHhhhcCCCCCCCC
Confidence            999999999999997

NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00