Citrus Sinensis ID: 027636

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGLSV
cEEEEccccccccEEEEEEcccEEEEEccEEEEcccccccccccEEEcccEEEccccEEEcccEEEEEccEEEEEcccccccEEEEEccccccccccEEEEEccEEEcccccccccccccEEEEcccccccEEEEEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccEEccccccccccccccccccc
EEEEEcccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHcccHHHHccHHHccHHHcccccccccc
mtfenfagpakHQAVALRVGADHAVVYRCNVIgyqdtlyvhsnrqfyrecdiygtvdfIFGNAAVVLQKCAIyarkpmamqkntitaqnrkdpnqntgisihdcslyaapdlqaskgsiptylgrpwkLYSRVVYMLTYmgdhiqprgwlewngdfaldtlyygeymnsgpgsavghrvrwpgyrvitsateaskfTVSQFiygsswlpstgvaflgglsv
mtfenfagpakhQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTitaqnrkdpnqNTGISIHDCSLYAAPDLQASkgsiptylgrpwKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIygsswlpstgvAFLGGLSV
MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGLSV
***********HQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPM*******************GISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLG****
MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGLSV
**************VALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGLSV
MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLG****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGLSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query221 2.2.26 [Sep-21-2011]
Q9FK05587 Probable pectinesterase/p yes no 0.995 0.374 0.831 1e-112
Q9M3B0598 Probable pectinesterase/p no no 1.0 0.369 0.791 1e-108
O04887510 Pectinesterase 2 OS=Citru no no 0.986 0.427 0.639 1e-82
Q43062522 Pectinesterase/pectineste N/A no 1.0 0.423 0.621 2e-81
Q94CB1619 Probable pectinesterase/p no no 0.986 0.352 0.639 4e-80
Q9LXK7527 Probable pectinesterase/p no no 0.990 0.415 0.611 2e-79
P85076321 Pectinesterase OS=Actinid N/A no 0.950 0.654 0.652 5e-79
Q8RXK7573 Probable pectinesterase/p no no 0.986 0.380 0.611 7e-79
P09607550 Pectinesterase 2.1 OS=Sol N/A no 0.990 0.398 0.611 8e-79
O04886584 Pectinesterase 1 OS=Citru no no 0.990 0.375 0.630 9e-79
>sp|Q9FK05|PME61_ARATH Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1 Back     alignment and function desciption
 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 183/220 (83%), Positives = 196/220 (89%)

Query: 1   MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIF 60
           MTFEN+AGPAKHQAVALRVG DHAVVYRCN+IGYQD LYVHSNRQF+REC+IYGTVDFIF
Sbjct: 367 MTFENYAGPAKHQAVALRVGGDHAVVYRCNIIGYQDALYVHSNRQFFRECEIYGTVDFIF 426

Query: 61  GNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIP 120
           GNAAV+LQ C IYARKPMA QK TITAQNRKDPNQNTGISIH C L A PDL+ASKGS P
Sbjct: 427 GNAAVILQSCNIYARKPMAQQKITITAQNRKDPNQNTGISIHACKLLATPDLEASKGSYP 486

Query: 121 TYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVR 180
           TYLGRPWKLYSRVVYM++ MGDHI PRGWLEWNG FALD+LYYGEYMN G GS +G RV+
Sbjct: 487 TYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVK 546

Query: 181 WPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGLS 220
           WPGY VITS  EASKFTV+QFI GSSWLPSTGV+F  GLS
Sbjct: 547 WPGYHVITSTVEASKFTVAQFISGSSWLPSTGVSFFSGLS 586
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9M3B0|PME34_ARATH Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|Q94CB1|PME25_ARATH Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1 Back     alignment and function description
>sp|Q9LXK7|PME32_ARATH Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1 Back     alignment and function description
>sp|P85076|PME_ACTDE Pectinesterase OS=Actinidia deliciosa PE=1 SV=1 Back     alignment and function description
>sp|Q8RXK7|PME41_ARATH Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 Back     alignment and function description
>sp|P09607|PME21_SOLLC Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2 Back     alignment and function description
>sp|O04886|PME1_CITSI Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query221
224118274 550 predicted protein [Populus trichocarpa] 0.990 0.398 0.858 1e-113
119507461 617 pectin methylesterase 1 [Pyrus communis] 1.0 0.358 0.832 1e-112
224135163 605 predicted protein [Populus trichocarpa] 1.0 0.365 0.837 1e-111
357436491 609 Pectinesterase [Medicago truncatula] gi| 1.0 0.362 0.814 1e-111
449456965 605 PREDICTED: probable pectinesterase/pecti 1.0 0.365 0.832 1e-110
38566730254 pectin methylesterase [Cicer arietinum] 1.0 0.870 0.828 1e-110
225455386 597 PREDICTED: probable pectinesterase/pecti 1.0 0.370 0.837 1e-110
15238729 587 Putative pectinesterase/pectinesterase i 0.995 0.374 0.831 1e-110
297796173 587 pectinesterase family protein [Arabidops 0.995 0.374 0.827 1e-110
449531928 604 PREDICTED: probable pectinesterase/pecti 1.0 0.365 0.823 1e-110
>gi|224118274|ref|XP_002317777.1| predicted protein [Populus trichocarpa] gi|222858450|gb|EEE95997.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  411 bits (1057), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 188/219 (85%), Positives = 201/219 (91%)

Query: 1   MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIF 60
           MTFEN+AGPAKHQAVALRVGADHAVVYRC++IGYQDTLYVHSNRQFYRECDIYGTVDFIF
Sbjct: 332 MTFENWAGPAKHQAVALRVGADHAVVYRCSIIGYQDTLYVHSNRQFYRECDIYGTVDFIF 391

Query: 61  GNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIP 120
           GNAAVVLQ C+IYARKPMA QKNTITAQNRKDPNQNTGISIH C + AA DL  SKG+ P
Sbjct: 392 GNAAVVLQNCSIYARKPMASQKNTITAQNRKDPNQNTGISIHACKILAASDLAPSKGTFP 451

Query: 121 TYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVR 180
           TYLGRPWKLYSR VYML++MGDHI PRGWLEW+  FALDTLYYGEYMN GPG+AVG RV+
Sbjct: 452 TYLGRPWKLYSRTVYMLSFMGDHIHPRGWLEWDASFALDTLYYGEYMNYGPGAAVGQRVK 511

Query: 181 WPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 219
           WPGYRVITS  EA+KFTV+QFIYGSSWLPSTGVAFL GL
Sbjct: 512 WPGYRVITSTVEANKFTVAQFIYGSSWLPSTGVAFLAGL 550

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|119507461|dbj|BAF42038.1| pectin methylesterase 1 [Pyrus communis] Back     alignment and taxonomy information
>gi|224135163|ref|XP_002321999.1| predicted protein [Populus trichocarpa] gi|222868995|gb|EEF06126.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357436491|ref|XP_003588521.1| Pectinesterase [Medicago truncatula] gi|355477569|gb|AES58772.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|449456965|ref|XP_004146219.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Cucumis sativus] gi|449511042|ref|XP_004163847.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|38566730|emb|CAE76634.1| pectin methylesterase [Cicer arietinum] Back     alignment and taxonomy information
>gi|225455386|ref|XP_002278061.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 34-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|15238729|ref|NP_200149.1| Putative pectinesterase/pectinesterase inhibitor 61 [Arabidopsis thaliana] gi|75309150|sp|Q9FK05.1|PME61_ARATH RecName: Full=Probable pectinesterase/pectinesterase inhibitor 61; Includes: RecName: Full=Pectinesterase inhibitor 61; AltName: Full=Pectin methylesterase inhibitor 61; Includes: RecName: Full=Pectinesterase 61; Short=PE 61; AltName: Full=AtPMEpcrF; AltName: Full=Pectin methylesterase 61; Short=AtPME61 gi|13507549|gb|AAK28637.1|AF360340_1 putative pectinesterase [Arabidopsis thaliana] gi|9759184|dbj|BAB09799.1| pectinesterase [Arabidopsis thaliana] gi|15293287|gb|AAK93754.1| putative pectinesterase [Arabidopsis thaliana] gi|332008962|gb|AED96345.1| Putative pectinesterase/pectinesterase inhibitor 61 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297796173|ref|XP_002865971.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] gi|297311806|gb|EFH42230.1| pectinesterase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449531928|ref|XP_004172937.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 61-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query221
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.995 0.374 0.831 8.8e-102
TAIR|locus:2082951598 AT3G49220 [Arabidopsis thalian 1.0 0.369 0.791 8.2e-99
TAIR|locus:2103212619 AT3G10720 [Arabidopsis thalian 0.986 0.352 0.639 2.5e-74
TAIR|locus:2084751527 AT3G43270 [Arabidopsis thalian 0.990 0.415 0.611 1.6e-72
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 0.986 0.380 0.611 2e-72
TAIR|locus:2175334624 AT5G04970 [Arabidopsis thalian 0.986 0.349 0.611 8.6e-72
TAIR|locus:2024750579 AT1G02810 [Arabidopsis thalian 0.986 0.376 0.611 1.1e-71
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.981 0.424 0.616 1.4e-71
TAIR|locus:2062013560 AT2G47550 [Arabidopsis thalian 0.986 0.389 0.607 3.7e-71
TAIR|locus:2091000592 PME3 "pectin methylesterase 3" 0.990 0.369 0.611 4.8e-71
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
 Identities = 183/220 (83%), Positives = 196/220 (89%)

Query:     1 MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIF 60
             MTFEN+AGPAKHQAVALRVG DHAVVYRCN+IGYQD LYVHSNRQF+REC+IYGTVDFIF
Sbjct:   367 MTFENYAGPAKHQAVALRVGGDHAVVYRCNIIGYQDALYVHSNRQFFRECEIYGTVDFIF 426

Query:    61 GNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIP 120
             GNAAV+LQ C IYARKPMA QK TITAQNRKDPNQNTGISIH C L A PDL+ASKGS P
Sbjct:   427 GNAAVILQSCNIYARKPMAQQKITITAQNRKDPNQNTGISIHACKLLATPDLEASKGSYP 486

Query:   121 TYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVR 180
             TYLGRPWKLYSRVVYM++ MGDHI PRGWLEWNG FALD+LYYGEYMN G GS +G RV+
Sbjct:   487 TYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVK 546

Query:   181 WPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGLS 220
             WPGY VITS  EASKFTV+QFI GSSWLPSTGV+F  GLS
Sbjct:   547 WPGYHVITSTVEASKFTVAQFISGSSWLPSTGVSFFSGLS 586
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
TAIR|locus:2082951 AT3G49220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103212 AT3G10720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175334 AT5G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FK05PME61_ARATH3, ., 1, ., 1, ., 1, 10.83180.99540.3747yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XII.179.1
SubName- Full=Putative uncharacterized protein; (550 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.41450001
hypothetical protein (176 aa)
  •     0.467

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-168
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-147
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-125
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-123
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 1e-116
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-116
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-110
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-108
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-108
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-107
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-105
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-105
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-103
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-102
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 2e-92
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 9e-92
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 4e-91
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-90
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-85
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 2e-81
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-72
PLN02197588 PLN02197, PLN02197, pectinesterase 6e-61
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 1e-50
PLN02432293 PLN02432, PLN02432, putative pectinesterase 1e-48
PLN02773317 PLN02773, PLN02773, pectinesterase 1e-44
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 7e-42
PLN02671359 PLN02671, PLN02671, pectinesterase 3e-41
PLN02304379 PLN02304, PLN02304, probable pectinesterase 1e-36
PLN02497331 PLN02497, PLN02497, probable pectinesterase 4e-34
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 5e-33
PLN02634359 PLN02634, PLN02634, probable pectinesterase 4e-30
PLN02176340 PLN02176, PLN02176, putative pectinesterase 7e-26
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 9e-25
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 2e-11
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  476 bits (1226), Expect = e-168
 Identities = 192/221 (86%), Positives = 202/221 (91%)

Query: 1   MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIF 60
           MTFEN+AGPAKHQAVALRVGADHAVVYRCN+IGYQDTLYVHSNRQF+RECDIYGTVDFIF
Sbjct: 367 MTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIF 426

Query: 61  GNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIP 120
           GNAAVVLQ C+IYARKPMA QKNTITAQNRKDPNQNTGISIH C + AA DL ASKGS P
Sbjct: 427 GNAAVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAASDLAASKGSFP 486

Query: 121 TYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVR 180
           TYLGRPWKLYSR VYM++YMGDHI PRGWLEWN  FALDTLYYGEYMN GPGS VG RV+
Sbjct: 487 TYLGRPWKLYSRTVYMMSYMGDHIHPRGWLEWNTTFALDTLYYGEYMNYGPGSGVGQRVK 546

Query: 181 WPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGLSV 221
           WPGYRVITS  EASKFTV+QFIYGSSWLPSTGV+FL GLS 
Sbjct: 547 WPGYRVITSTVEASKFTVAQFIYGSSWLPSTGVSFLAGLSQ 587

Length = 587
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 221
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02497331 probable pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02773317 pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02432293 putative pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02480343 Probable pectinesterase 100.0
PLN02671359 pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
PLN02480343 Probable pectinesterase 95.96
PRK10531422 acyl-CoA thioesterase; Provisional 95.63
PLN02773317 pectinesterase 95.57
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 95.02
PLN02176340 putative pectinesterase 94.77
PLN02665366 pectinesterase family protein 94.22
PLN02432293 putative pectinesterase 94.15
PLN02497331 probable pectinesterase 93.5
PLN02682369 pectinesterase family protein 93.35
PLN02634359 probable pectinesterase 93.21
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 92.89
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 92.73
PLN02197588 pectinesterase 92.46
PLN02671359 pectinesterase 92.23
PLN02416541 probable pectinesterase/pectinesterase inhibitor 92.14
PLN02314586 pectinesterase 92.05
PLN02916502 pectinesterase family protein 92.03
PLN02468565 putative pectinesterase/pectinesterase inhibitor 91.85
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 91.82
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 91.64
PLN02201520 probable pectinesterase/pectinesterase inhibitor 91.52
PLN02488509 probable pectinesterase/pectinesterase inhibitor 91.29
PLN02304379 probable pectinesterase 91.17
PLN02313587 Pectinesterase/pectinesterase inhibitor 90.95
PLN02506537 putative pectinesterase/pectinesterase inhibitor 90.93
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 90.78
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 90.62
PLN02301548 pectinesterase/pectinesterase inhibitor 90.44
PLN02170529 probable pectinesterase/pectinesterase inhibitor 90.22
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 89.82
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 88.92
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 88.91
PLN02484587 probable pectinesterase/pectinesterase inhibitor 88.74
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 88.7
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=1.4e-80  Score=581.18  Aligned_cols=219  Identities=54%  Similarity=1.010  Sum_probs=208.3

Q ss_pred             CEEEeCCCCCCCceEEEEEcCCeeEEEeeEEEcccceeeecCCcEEeEecEEcccccEEecCceeEEEeeEEEEecCCCC
Q 027636            1 MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAM   80 (221)
Q Consensus         1 iti~Nt~g~~~~QAvAl~~~~dr~~f~~c~~~g~QDTL~~~~gr~yf~~c~I~G~vDFIfG~g~a~Fe~c~i~~~~~~~~   80 (221)
                      |||+|++|+.++||||||+.+||++||+|+|+|||||||++.+||||++|||+|+||||||+|+|+||+|+|+++++..+
T Consensus       291 itf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~~RqyyrdC~I~GtVDFIFG~a~avFq~C~I~sr~~~~~  370 (509)
T PLN02488        291 MCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHRDRQFYRECFITGTVDFICGNAAAVFQFCQIVARQPMMG  370 (509)
T ss_pred             eEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCCCCEEEEeeEEeeccceEecceEEEEEccEEEEecCCCC
Confidence            79999999988999999999999999999999999999999999999999999999999999999999999999988777


Q ss_pred             CceEEEecCCCCCCCCeEEEEEcCEEeecCCCccCCCcccEEeeccCcCCCeEEEEeccCCCccCCCCCcCCCCCCCccc
Q 027636           81 QKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDT  160 (221)
Q Consensus        81 ~~~~ItA~~r~~~~~~~G~vf~~c~it~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~~~~~~~I~p~GW~~w~~~~~~~~  160 (221)
                      +.++||||+|+++++++||||++|+|++++++.+.....++||||||++|||||||+|+|+++|.|+||.+|+++.++++
T Consensus       371 ~~~~ITAq~R~~~~~~tGfvf~~C~it~~~~~~~~~~~~~~YLGRPW~~ySrvVf~~s~i~~~I~P~GW~~W~~~~~~~t  450 (509)
T PLN02488        371 QSNVITAQSRESKDDNSGFSIQKCNITASSDLDPVKATVKTYLGRPWRKYSTVAVLQSFIGDLVDPAGWTPWEGETGLST  450 (509)
T ss_pred             CCEEEEeCCCCCCCCCcEEEEEeeEEecCCcccccccccceeecCCCCCCccEEEEeccCCCeecccccCccCCCCCCCc
Confidence            78999999999999999999999999999876654444678999999999999999999999999999999998888899


Q ss_pred             eEEEEeeecCCCCCCCcceecCcccccCCHHHHhccchhccccCCCCcCCCCCeecCCC
Q 027636          161 LYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL  219 (221)
Q Consensus       161 ~~f~EY~n~GpGa~~s~Rv~w~~~~~l~t~~eA~~~t~~~~~~g~~W~p~~~ip~~~~~  219 (221)
                      ++|+||+|+||||++++||+|++++++++++||++|++.+||+|++|+|.++|||.+||
T Consensus       451 ~~yaEY~n~GPGA~~s~RV~W~g~~~l~~~~eA~~ft~~~fi~G~~Wl~~tgvp~~~gl  509 (509)
T PLN02488        451 LYYGEYQNRGPGAVTSKRVKWTGFRVMTDPKEATKFTVAKLLDGESWLKASGVPYEKGL  509 (509)
T ss_pred             eEEEEecccCCCCCcCCCcccccccccCCHHHHHhhhHHheeCCCCcCCCCCCCcCCCC
Confidence            99999999999999999999999888867899999999999999999999999999986

>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 1e-77
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 2e-76
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 2e-14
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 5e-14
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 5e-13
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 5e-10
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  285 bits (730), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 133/219 (60%), Positives = 159/219 (72%)
Query: 1   MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIF 60
           +  +N AGPAK QAVALRVGAD +V+ RC +  YQDTLY HS RQFYR+  + GTVDFIF
Sbjct: 97  ICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIF 156
Query: 61  GNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIP 120
           GNAAVV QKC + ARKP   Q+N +TAQ R DPNQ TG SI  C++ A+ DL+      P
Sbjct: 157 GNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFP 216
Query: 121 TYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVR 180
           TYLGRPWK YSR V M +Y+G  I P GW EW+GDFAL TLYYGE+MN+GPG+    RV+
Sbjct: 217 TYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVK 276
Query: 181 WPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 219
           WPGY VIT   +A  FTV++ I G SWL STGVA++ GL
Sbjct: 277 WPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-127
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-125
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-91
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 2e-83
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-69
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
 Score =  360 bits (926), Expect = e-127
 Identities = 133/219 (60%), Positives = 159/219 (72%)

Query: 1   MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIF 60
           +  +N AGPAK QAVALRVGAD +V+ RC +  YQDTLY HS RQFYR+  + GTVDFIF
Sbjct: 97  ICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIF 156

Query: 61  GNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIP 120
           GNAAVV QKC + ARKP   Q+N +TAQ R DPNQ TG SI  C++ A+ DL+      P
Sbjct: 157 GNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFP 216

Query: 121 TYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVR 180
           TYLGRPWK YSR V M +Y+G  I P GW EW+GDFAL TLYYGE+MN+GPG+    RV+
Sbjct: 217 TYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVK 276

Query: 181 WPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 219
           WPGY VIT   +A  FTV++ I G SWL STGVA++ GL
Sbjct: 277 WPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL 315
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query221
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.85
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.61
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 95.03
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.88
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 94.18
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 93.4
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=1.4e-76  Score=531.37  Aligned_cols=220  Identities=60%  Similarity=1.061  Sum_probs=207.4

Q ss_pred             CEEEeCCCCCCCceEEEEEcCCeeEEEeeEEEcccceeeecCCcEEeEecEEcccccEEecCceeEEEeeEEEEecCCCC
Q 027636            1 MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAM   80 (221)
Q Consensus         1 iti~Nt~g~~~~QAvAl~~~~dr~~f~~c~~~g~QDTL~~~~gr~yf~~c~I~G~vDFIfG~g~a~Fe~c~i~~~~~~~~   80 (221)
                      |||+|++++.++|||||++.+||++|+||+|+|+|||||++.+||||++|+|+|+||||||+|+|+||+|+|+++++..+
T Consensus        97 lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~~~avf~~c~i~~~~~~~~  176 (317)
T 1xg2_A           97 ICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKY  176 (317)
T ss_dssp             CEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEECCEEEEESCEEEECCCSTT
T ss_pred             eEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCCceEEEeeeEEEEeccCCC
Confidence            79999999888999999999999999999999999999999999999999999999999999999999999999987666


Q ss_pred             CceEEEecCCCCCCCCeEEEEEcCEEeecCCCccCCCcccEEeeccCcCCCeEEEEeccCCCccCCCCCcCCCCCCCccc
Q 027636           81 QKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDT  160 (221)
Q Consensus        81 ~~~~ItA~~r~~~~~~~G~vf~~c~it~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~~~~~~~I~p~GW~~w~~~~~~~~  160 (221)
                      +.++||||+|+++++++||||++|+|++++++.++....++||||||++++||||++|+|+++|+|+||.+|+++.++++
T Consensus       177 ~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~~I~p~GW~~w~~~~~~~t  256 (317)
T 1xg2_A          177 QQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINPAGWAEWDGDFALKT  256 (317)
T ss_dssp             CCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECTTBCTTCSCCSSTTTTTTT
T ss_pred             CccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCCcccccccccCCCCCCcCc
Confidence            78999999999999999999999999999876554444589999999999999999999999999999999998888889


Q ss_pred             eEEEEeeecCCCCCCCcceecCcccccCCHHHHhccchhccccCCCCcCCCCCeecCCCC
Q 027636          161 LYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGLS  220 (221)
Q Consensus       161 ~~f~EY~n~GpGa~~s~Rv~w~~~~~l~t~~eA~~~t~~~~~~g~~W~p~~~ip~~~~~~  220 (221)
                      ++|+||+|+|||+++++||+|+++++|++++||++|+..+||+|++|+|.+++||.+||.
T Consensus       257 ~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~~  316 (317)
T 1xg2_A          257 LYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLY  316 (317)
T ss_dssp             CEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSSC
T ss_pred             eEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCcccccccc
Confidence            999999999999999999999998888678999999999999998899999999999974
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 221
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-106
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 4e-64
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  307 bits (787), Expect = e-106
 Identities = 133/219 (60%), Positives = 159/219 (72%)

Query: 1   MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIF 60
           +TF+N AG AKHQAVALRVG+D +  YRC+++ YQD+LYVHSNRQF+  C I GTVDFIF
Sbjct: 101 ITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIF 160

Query: 61  GNAAVVLQKCAIYARKPMAMQKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIP 120
           GNAAVVLQ C I+AR+P + QKN +TAQ R DPNQNTGI I    + A  DLQ  + S P
Sbjct: 161 GNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFP 220

Query: 121 TYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDTLYYGEYMNSGPGSAVGHRVR 180
           TYLGRPWK YSR V M + + + I P GW  W+G+FALDTLYYGEY N+G G+A   RV 
Sbjct: 221 TYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVT 280

Query: 181 WPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL 219
           W G++VITS+TEA  FT   FI G SWL +T   F  GL
Sbjct: 281 WKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query221
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.55
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.86
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=2.7e-80  Score=553.18  Aligned_cols=219  Identities=61%  Similarity=1.027  Sum_probs=207.6

Q ss_pred             CEEEeCCCCCCCceEEEEEcCCeeEEEeeEEEcccceeeecCCcEEeEecEEcccccEEecCceeEEEeeEEEEecCCCC
Q 027636            1 MTFENFAGPAKHQAVALRVGADHAVVYRCNVIGYQDTLYVHSNRQFYRECDIYGTVDFIFGNAAVVLQKCAIYARKPMAM   80 (221)
Q Consensus         1 iti~Nt~g~~~~QAvAl~~~~dr~~f~~c~~~g~QDTL~~~~gr~yf~~c~I~G~vDFIfG~g~a~Fe~c~i~~~~~~~~   80 (221)
                      |||+|++|..++|||||++++||++||||+|+|||||||++.|||||++|+|||+||||||+|+|+||+|+|+++++..+
T Consensus       101 itf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIfG~~~a~f~~c~i~~~~~~~~  180 (319)
T d1gq8a_         101 ITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSG  180 (319)
T ss_dssp             EEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEEESCEEEEESCEEEECCCSTT
T ss_pred             eEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEecCceeEeecceeeeecCCCC
Confidence            79999999888999999999999999999999999999999999999999999999999999999999999999987777


Q ss_pred             CceEEEecCCCCCCCCeEEEEEcCEEeecCCCccCCCcccEEeeccCcCCCeEEEEeccCCCccCCCCCcCCCCCCCccc
Q 027636           81 QKNTITAQNRKDPNQNTGISIHDCSLYAAPDLQASKGSIPTYLGRPWKLYSRVVYMLTYMGDHIQPRGWLEWNGDFALDT  160 (221)
Q Consensus        81 ~~~~ItA~~r~~~~~~~G~vf~~c~it~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~~~~~~~I~p~GW~~w~~~~~~~~  160 (221)
                      +.++||||+|+++.+++||||++|+|+++++..+.....++||||||++++||||++|+|++||.|+||.+|+...+.++
T Consensus       181 ~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l~~~I~p~GW~~w~~~~~~~t  260 (319)
T d1gq8a_         181 QKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDT  260 (319)
T ss_dssp             CCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEECTTBCTTCCCCSSTTTTTTT
T ss_pred             CceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEecccccccccccccccCCCCccCc
Confidence            78999999999999999999999999999886655445689999999999999999999999999999999998888899


Q ss_pred             eEEEEeeecCCCCCCCcceecCcccccCCHHHHhccchhccccCCCCcCCCCCeecCCC
Q 027636          161 LYYGEYMNSGPGSAVGHRVRWPGYRVITSATEASKFTVSQFIYGSSWLPSTGVAFLGGL  219 (221)
Q Consensus       161 ~~f~EY~n~GpGa~~s~Rv~w~~~~~l~t~~eA~~~t~~~~~~g~~W~p~~~ip~~~~~  219 (221)
                      ++|+||+|+|||+++++||+|++++++++++||++|+.++||+|++|+|.++|||.+||
T Consensus       261 ~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         261 LYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             CEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             eEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            99999999999999999999998766669999999999999999889999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure