Citrus Sinensis ID: 027659

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEcccEEEEEEcccccccEEEEcccHHHHHHHHHHcccccccccccccccEEEEEcccccHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEcccccccccccccccEEEEccccccccHHHHHHHHHHHccccEEEEEEEEEccHHHHHHHHHHHHccccEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEcccEEEEEEcccccccEEEHHHHHHHHHHHHHHcccccccccccccccEEEEEcccHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccccccccccccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEEEEcccHHHHHHHHHHHHHccEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
meadrlnspstsVINLEVLGhqlqfsqdpnskhlgttvWDASVVFVKYLEKncrkgrfcpsklkgkrVIELGAGCGVAGFGMALLGcnvittdqieVLPLLKRNvewntsrisqmnpgsdllgSIQAVeldwgnedhikavappfdyiigTDVYAEHLLEPLLQTIfalsgpkttiLLGYEIRSTSVHEQMLQMWKSNfnvklvpkakestmwgnplgly
Flexible Loop (DISEMBL)
meadrlnspstSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKncrkgrfcpsklkgkrVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRisqmnpgsdLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNfnvklvpkakestmwgnplgly
Low Complexity Region (SEG)
MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Disordered region (IsUnstruct)
*************INLEVLGHQLQF******KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP***************
Disordered Region (DISOPRED)
*********STSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP*GLY
Disordered Region (DISEMBL)
**********TSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Disordered Region (DISPRO)
*****LNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNPLGLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q9H867	229	Protein-lysine methyltran	yes	no	0.795	0.764	0.333	2e-19
Q8C436	228	Protein-lysine methyltran	yes	no	0.768	0.741	0.352	2e-19
A4IGU3	215	Protein-lysine methyltran	no	no	0.836	0.855	0.304	9e-16
Q8WXB1	218	Protein-lysine methyltran	no	no	0.754	0.761	0.333	5e-15
Q28IN4	224	Protein-lysine methyltran	no	no	0.709	0.696	0.327	1e-13
A4FV98	226	Protein-lysine methyltran	yes	no	0.790	0.769	0.306	2e-13
Q5BLD8	218	Protein-lysine methyltran	yes	no	0.6	0.605	0.391	3e-13
Q8BLU2	248	Protein-lysine methyltran	no	no	0.759	0.673	0.288	8e-13
A6NDL7	271	Putative methyltransferas	no	no	0.722	0.586	0.316	1e-12
A6QP81	257	Protein-lysine methyltran	no	no	0.745	0.638	0.281	2e-12

>sp|Q9H867|MT21D_HUMAN Protein-lysine methyltransferase METTL21D OS=Homo sapiens GN=METTL21D PE=1 SV=2

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 17/192 (8%)

Query: 27  QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
           Q  +S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct: 31  QQYSSGGVGCVVWDAAIVLSKYLETPEFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query: 87  CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
            +V+ TD  E+  LLK N+  N   ++         GS+QA  L WG E  I+    P D
Sbjct: 90  ADVVVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWGEE--IEGFPSPPD 138

Query: 147 YIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWKSNFNV 201
           +I+  D +Y E  LEPLL+T+  +SG +T I+  YE R+      + ++  ++ + +F+ 
Sbjct: 139 FILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKKYFELLQLDFDF 198

Query: 202 KLVPKAKESTMW 213
           + +P  K    +
Sbjct: 199 EKIPLEKHDEEY 210

Probable methyltransferase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8C436|MT21D_MOUSE Protein-lysine methyltransferase METTL21D OS=Mus musculus GN=Mettl21d PE=2 SV=2

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 100/187 (53%), Gaps = 18/187 (9%)

Query: 27  QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
           Q   S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct: 31  QQYGSGGVGCVVWDAAIVLSKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query: 87  CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
            +VI TD  E+  LLK N++ N   ++         GS+QA  L WG +  I+ +  P D
Sbjct: 90  ADVIVTDLEELQDLLKMNIDMNKHLVT---------GSVQAKVLKWGED--IEDLMSP-D 137

Query: 147 YIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWKSNFNV 201
           YI+  D +Y E  LEPLL+T+  LSG +T I+  YE R+      + ++  ++ + +F+ 
Sbjct: 138 YILMADCIYYEESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFDF 197

Query: 202 KLVPKAK 208
           + +P  K
Sbjct: 198 EEIPLDK 204

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4IGU3|MT21A_XENTR Protein-lysine methyltransferase METTL21A OS=Xenopus tropicalis GN=mettl21a PE=2 SV=1

 Score = 83.6 bits (205), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 63/207 (30%), Positives = 91/207 (43%), Gaps = 23/207 (11%)

Query: 5   RLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLK 64
           R +  S S    + + H ++  QD     +   VWDA++V   YLE            L+
Sbjct: 16  RFHDSSAS---FKFVNHNIEIKQDWKQLGVAAVVWDAALVLCMYLESE-------GIHLQ 65

Query: 65  GKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGS 124
              VIELGAG G+ G   ALLG  V  TD+   +  L+ NV  N  +        D L  
Sbjct: 66  NSSVIELGAGTGLVGIVAALLGAQVTITDRDLAMEFLRMNVRDNIPK--------DSLHR 117

Query: 125 IQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIR 183
           +    L+WG           +D+I+G D +Y E     LLQT   LS  ++ ILL   +R
Sbjct: 118 VSVRALNWGKS---LEEFSTYDFILGADIIYLEETFPDLLQTFLHLSSQQSVILLSSRLR 174

Query: 184 STSVHEQMLQMWKSNFNVKLVPKAKES 210
               H+  L+M K +F +  V   K +
Sbjct: 175 YQRDHD-FLEMMKLHFTIADVYYDKNT 200

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2

 Score = 81.3 bits (199), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 84/186 (45%), Gaps = 20/186 (10%)

Query: 21  HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
           H +Q  QD     +   VWDA++V   YLE           +L+G+  +ELGAG G+ G 
Sbjct: 29  HTIQIRQDWRHLGVAAVVWDAAIVLSTYLEMGA-------VELRGRSAVELGAGTGLVGI 81

Query: 81  GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140
             ALLG +V  TD+   L  LK NV        Q N    +       EL WG   ++ +
Sbjct: 82  VAALLGAHVTITDRKVALEFLKSNV--------QANLPPHIQTKTVVKELTWGQ--NLGS 131

Query: 141 VAP-PFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSN 198
            +P  FD I+G D +Y E     LLQT+  L    + ILL   IR        L M +  
Sbjct: 132 FSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRIRYER-DNNFLAMLERQ 190

Query: 199 FNVKLV 204
           F V+ V
Sbjct: 191 FTVRKV 196

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q28IN4|MT21B_XENTR Protein-lysine methyltransferase METTL21B OS=Xenopus tropicalis GN=mettl21b PE=2 SV=1

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 88/177 (49%), Gaps = 21/177 (11%)

Query: 38  VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEV 97
           VWDA++    Y E+  +K  F     KGK+VIELGAG G+ G  ++LLG +V  TD    
Sbjct: 57  VWDAALFLCGYFEE--QKLDF-----KGKKVIELGAGTGIVGILVSLLGGHVTLTDLPHA 109

Query: 98  LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH 157
           L  +++NV  N   +S  NP        Q   L WG +   +     +D+++G D+   H
Sbjct: 110 LSQIQKNVSAN---VSSNNPP-------QVCALSWGLDQ--EKFPQDYDFVLGADIVYLH 157

Query: 158 LLEPLL-QTIFALSGPKTTILLGYEIRSTSVHEQMLQ-MWKSNFNVKLVPKAKESTM 212
              PLL QT+  L GP+T+I L  ++R         Q +    F  +LV + K+  +
Sbjct: 158 DTYPLLIQTLQYLCGPQTSIFLSSKMRQEHGTMHFFQDILPQYFASELVKRNKDEEI 214

Probable methyltransferase.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A4FV98|MT21B_BOVIN Protein-lysine methyltransferase METTL21B OS=Bos taurus GN=METTL21B PE=2 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 90/196 (45%), Gaps = 22/196 (11%)

Query: 20  GHQLQFSQDPNSK-HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVA 78
           GH L  +++  S+  +   VWDA++    Y E             +GK+VIELGAG G+ 
Sbjct: 37  GHVLNITENFGSRLGVAARVWDAALSLCNYFESQN-------VDFRGKKVIELGAGTGIV 89

Query: 79  GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138
           G   AL G +V  TD   VL  ++ NV+ N        PG    G  Q   L WG + H+
Sbjct: 90  GILAALQGGDVTITDLPLVLEQIQGNVQANVP------PG----GRAQVRALSWGIDQHV 139

Query: 139 KAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ-MWK 196
                 +D ++G D VY E     LL T+  L GP  TI L  ++R     E   Q +  
Sbjct: 140 --FPGDYDLVLGADIVYLEPTFPLLLGTLRHLCGPHGTIYLASKMREEHGTESFFQHLLP 197

Query: 197 SNFNVKLVPKAKESTM 212
            +F ++L  + ++  +
Sbjct: 198 QHFQLELAQRDEDENV 213

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5BLD8|MT21A_DANRE Protein-lysine methyltransferase METTL21A OS=Danio rerio GN=mettl21a PE=2 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 70/143 (48%), Gaps = 11/143 (7%)

Query: 63  LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLL 122
           LKGKRVIELGAG G+ G   ALLG NV  TD+   L  L  NV  N  +  Q        
Sbjct: 64  LKGKRVIELGAGTGLVGIVAALLGANVTITDREPALEFLTANVHENIPQGRQ-------- 115

Query: 123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYE 181
            ++Q  EL WG    +      +D I+G D VY E     LLQT+  LS   T +LL   
Sbjct: 116 KAVQVSELTWGENLDLYPQG-GYDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCR 174

Query: 182 IRSTSVHEQMLQMWKSNFNVKLV 204
           IR     E+ L   +  F+V+ V
Sbjct: 175 IRYER-DERFLTELRQRFSVQEV 196

Probable methyltransferase.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8BLU2|MT21C_MOUSE Protein-lysine methyltransferase METTL21C OS=Mus musculus GN=Mettl21c PE=2 SV=1

 Score = 73.9 bits (180), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 17/184 (9%)

Query: 32  KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVIT 91
           ++ GT VW  +    +YLE +  +       L+  +++E+GAG G+     +LLG  V  
Sbjct: 69  ENYGTVVWPGATALCQYLEDHTEE-----LNLQDAKILEIGAGAGLVSIVSSLLGAQVTA 123

Query: 92  TDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--EDHIKAVAPPFDYII 149
           TD  +VL  L+ N+  NT   +   P        +  EL WG   E         +DY++
Sbjct: 124 TDLPDVLGNLQYNILKNTLECTAHLP--------EVRELVWGEDLEQSFPKSTCCYDYVL 175

Query: 150 GTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK 208
            +D VY  + L+ LL T+  LS P T +L   + R ++ +E  L  +K  F+  L+ +  
Sbjct: 176 ASDVVYHHYFLDKLLATMVYLSQPGTVVLWANKFRFSADYE-FLGKFKQAFDTTLLAEYS 234

Query: 209 ESTM 212
           ES++
Sbjct: 235 ESSV 238

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6NDL7|MT21E_HUMAN Putative methyltransferase-like protein 21E pseudogene OS=Homo sapiens GN=METTL21EP PE=5 SV=2

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 85/177 (48%), Gaps = 18/177 (10%)

Query: 10  STSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVI 69
           +TS  +   +GH+++ ++  +    G  VW +++V   +LE N ++       +  K VI
Sbjct: 69  TTSWESFHFIGHEIRITEAMDC--YGAVVWPSALVLCYFLETNAKQ-----YNMVDKNVI 121

Query: 70  ELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE 129
           E+GAG G+     +LLG +V  TD  E+L  L+ N+  NT   S+  P        Q  E
Sbjct: 122 EIGAGTGLVSIVASLLGAHVTATDLPELLGNLQYNISRNTKMKSKHLP--------QVKE 173

Query: 130 LDWGN--EDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIR 183
           L WG   + +    +  FDYI+  D VYA   LE LL T   L    T IL   + R
Sbjct: 174 LSWGVALDTNFPRSSNNFDYILAADVVYAHPFLEELLITFDHLCKETTIILWAMKFR 230

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A6QP81|MT21C_BOVIN Protein-lysine methyltransferase METTL21C OS=Bos taurus GN=METTL21C PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 17/181 (9%)

Query: 35  GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ 94
           G  VW  ++   +YLE++  +       L+G +++E+GAG G+     ++LG  V  TD 
Sbjct: 81  GAVVWPGAMALCQYLEEHTEE-----LNLRGAKILEIGAGPGLVSIVASILGAQVTATDL 135

Query: 95  IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--EDHIKAVAPPFDYIIGTD 152
            +VL  L+ N+  NT   +   P        +  EL WG   E         +DY++ +D
Sbjct: 136 PDVLGNLQYNLLKNTLNCTTYLP--------EVKELVWGEGLEQSFPKSTLYYDYVLASD 187

Query: 153 -VYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKEST 211
            VY  + L+ LL T+  L  P T +L   + R ++ +E  L  +K  F+  L+ +++ES+
Sbjct: 188 VVYHHYFLDKLLATMVYLCQPGTVLLWANKFRFSTDYE-FLDKFKQVFDTTLLAESQESS 246

Query: 212 M 212
           +
Sbjct: 247 I 247

Probable methyltransferase.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
296087474	364	unnamed protein product [Vitis vinifera]	0.981	0.593	0.820	1e-102
225465726	314	PREDICTED: methyltransferase-like protei	0.981	0.687	0.820	1e-102
225436496	314	PREDICTED: methyltransferase-like protei	0.981	0.687	0.815	1e-102
255565427	314	conserved hypothetical protein [Ricinus	0.981	0.687	0.788	5e-97
449496188	309	PREDICTED: methyltransferase-like protei	0.977	0.695	0.760	1e-94
449456044	309	PREDICTED: methyltransferase-like protei	0.977	0.695	0.760	1e-94
297849112	322	hypothetical protein ARALYDRAFT_888039 [	0.981	0.670	0.737	7e-94
42571401	315	S-adenosylmethionine-dependent methyltra	0.977	0.682	0.741	9e-93
334182376	322	S-adenosylmethionine-dependent methyltra	0.959	0.655	0.746	2e-91
356542662	304	PREDICTED: methyltransferase-like protei	0.972	0.703	0.751	3e-91

>gi|296087474|emb|CBI34063.3| unnamed protein product [Vitis vinifera]

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/217 (82%), Positives = 194/217 (89%), Gaps = 1/217 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSP+TS I  EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 51  MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 110

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 111 SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 170

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLG 179
             GS+Q  ELDWGNEDHIKAV PPFD+IIGTD VYAEHLL+PLL+TIFALSGPKTTILLG
Sbjct: 171 SFGSVQVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 230

Query: 180 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 216
           YEIRST+VHEQML MWK NF VK++PKAK    + +P
Sbjct: 231 YEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 267

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465726|ref|XP_002263990.1| PREDICTED: methyltransferase-like protein 21D-like [Vitis vinifera]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 178/217 (82%), Positives = 194/217 (89%), Gaps = 1/217 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSP+TS I  EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 1   MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 120

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLG 179
             GS+Q  ELDWGNEDHIKAV PPFD+IIGTD VYAEHLL+PLL+TIFALSGPKTTILLG
Sbjct: 121 SFGSVQVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 180

Query: 180 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 216
           YEIRST+VHEQML MWK NF VK++PKAK    + +P
Sbjct: 181 YEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436496|ref|XP_002273361.1| PREDICTED: methyltransferase-like protein 21D [Vitis vinifera] gi|297734922|emb|CBI17156.3| unnamed protein product [Vitis vinifera]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 177/217 (81%), Positives = 194/217 (89%), Gaps = 1/217 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSP+TS I  EVLGHQLQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKGRF P
Sbjct: 1   MEPDRLNSPNTSAIMFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V++TDQ EVLPLL RNVE NTSRI QMNPGSD
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSD 120

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLG 179
             GS++  ELDWGNEDHIKAV PPFD+IIGTD VYAEHLL+PLL+TIFALSGPKTTILLG
Sbjct: 121 SFGSVEVAELDWGNEDHIKAVNPPFDFIIGTDVVYAEHLLDPLLRTIFALSGPKTTILLG 180

Query: 180 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 216
           YEIRST+VHEQML MWK NF VK++PKAK    + +P
Sbjct: 181 YEIRSTNVHEQMLDMWKQNFEVKIIPKAKMDRKYQHP 217

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565427|ref|XP_002523704.1| conserved hypothetical protein [Ricinus communis] gi|223537008|gb|EEF38644.1| conserved hypothetical protein [Ricinus communis]

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 171/217 (78%), Positives = 187/217 (86%), Gaps = 1/217 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSPS+ VI LEV+ HQLQF QDPNSKHLGTTVWDAS+VF K+LEKNCRKGRF P
Sbjct: 1   MEHDRLNSPSSCVITLEVMSHQLQFCQDPNSKHLGTTVWDASMVFAKFLEKNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCGVAGFGMALLGC+V+ TDQ EVLPLL RNVE NTSRI QM+  S 
Sbjct: 61  SKLKGKRVIELGAGCGVAGFGMALLGCDVVATDQKEVLPLLMRNVERNTSRIMQMDTNSV 120

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLG 179
              SI+  ELDWGNEDHI+AV PPFDYIIGTD VY EHLLEPLLQTIFALSGPKTTI++G
Sbjct: 121 SFRSIKVEELDWGNEDHIRAVDPPFDYIIGTDVVYTEHLLEPLLQTIFALSGPKTTIMMG 180

Query: 180 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 216
           YEIRSTSVHEQML MWK NF VK++PKAK  + + +P
Sbjct: 181 YEIRSTSVHEQMLDMWKKNFEVKVIPKAKMDSKYQHP 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496188|ref|XP_004160067.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/217 (76%), Positives = 190/217 (87%), Gaps = 2/217 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           MEADRLNSPST  + +EVLGH+L+F QDPNSKHLGTTVWDAS+VFVK+LE+NCRKG+F P
Sbjct: 1   MEADRLNSPSTFTMTMEVLGHELRFYQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCG+AGFGMALLGC+V+ TDQ EVLP+L RN+E NT  ++QMNP SD
Sbjct: 61  SKLKGKRVIELGAGCGLAGFGMALLGCDVVATDQREVLPILSRNIERNTPSLAQMNP-SD 119

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLG 179
             GSI+A ELDWGNEDHIKAV PPFD+IIGTD VYAEHLLEPLL TI ALSGPKTTI+LG
Sbjct: 120 SFGSIRAAELDWGNEDHIKAVGPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIMLG 179

Query: 180 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 216
           YEIRST+VHEQML+MWK NF VK V ++K  + + +P
Sbjct: 180 YEIRSTNVHEQMLEMWKKNFEVKTVSQSKMDSQYQHP 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456044|ref|XP_004145760.1| PREDICTED: methyltransferase-like protein 21D-like [Cucumis sativus]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 165/217 (76%), Positives = 190/217 (87%), Gaps = 2/217 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           MEADRLNSPST  + +EVLGH+L+F QDPNSKHLGTTVWDAS+VFVK+LE+NCRKG+F P
Sbjct: 1   MEADRLNSPSTFTMTMEVLGHELRFYQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKRVIELGAGCG+AGFGMALLGC+V+ TDQ EVLP+L RN+E NT  ++QMNP SD
Sbjct: 61  SKLKGKRVIELGAGCGLAGFGMALLGCDVVATDQREVLPILSRNIERNTPSLAQMNP-SD 119

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLG 179
             GSI+A ELDWGNEDHIKAV PPFD+IIGTD VYAEHLLEPLL TI ALSGPKTTI+LG
Sbjct: 120 SFGSIRAAELDWGNEDHIKAVGPPFDFIIGTDVVYAEHLLEPLLMTIHALSGPKTTIMLG 179

Query: 180 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 216
           YEIRST+VHEQML+MWK NF VK V ++K  + + +P
Sbjct: 180 YEIRSTNVHEQMLEMWKKNFEVKTVSQSKMDSQYQHP 216

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849112|ref|XP_002892437.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata] gi|297338279|gb|EFH68696.1| hypothetical protein ARALYDRAFT_888039 [Arabidopsis lyrata subsp. lyrata]

 Score =  348 bits (894), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 160/217 (73%), Positives = 185/217 (85%), Gaps = 1/217 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           M+ DRLNSPST  + +EVLGH+L F+QDPNSKHLGTTVWDAS+VF KYL KNCRKGRF P
Sbjct: 1   MDPDRLNSPSTCTVTIEVLGHELNFAQDPNSKHLGTTVWDASMVFAKYLGKNCRKGRFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTS I QM PGS 
Sbjct: 61  SKLKGKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSTILQMTPGSA 120

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLG 179
             GS++  ELDWGNEDHI+AV PPFDY+IGTD VY+E LLEPLL+TI ALSGPKTT++LG
Sbjct: 121 SFGSLRVAELDWGNEDHIRAVGPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLG 180

Query: 180 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 216
           YEIRST VH++MLQMWK NF VK +P++K    + +P
Sbjct: 181 YEIRSTVVHDKMLQMWKDNFEVKTIPRSKMDGEYQDP 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42571401|ref|NP_973791.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332190127|gb|AEE28248.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  345 bits (884), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 161/217 (74%), Positives = 184/217 (84%), Gaps = 2/217 (0%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           M+ DRLNSPST  + +EVLGH+L F+QDPNSKHLGTTVWDAS+VF KYL KN RKGRF  
Sbjct: 1   MDPDRLNSPSTCTVTIEVLGHELDFAQDPNSKHLGTTVWDASMVFAKYLGKNSRKGRFSS 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           SKLKGKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS 
Sbjct: 61  SKLKGKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGS- 119

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLG 179
             GS++  ELDWGNEDHI AV PPFDY+IGTD VY+E LLEPLL+TI ALSGPKTT++LG
Sbjct: 120 AFGSLRVAELDWGNEDHITAVEPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLG 179

Query: 180 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 216
           YEIRST VHE+MLQMWK NF VK +P++K    + +P
Sbjct: 180 YEIRSTVVHEKMLQMWKDNFEVKTIPRSKMDGEYQDP 216

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334182376|ref|NP_001184933.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana] gi|332190128|gb|AEE28249.1| S-adenosylmethionine-dependent methyltransferase domain-containing protein [Arabidopsis thaliana]

 Score =  340 bits (872), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 159/213 (74%), Positives = 181/213 (84%), Gaps = 2/213 (0%)

Query: 5   RLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLK 64
           RLNSPST  + +EVLGH+L F+QDPNSKHLGTTVWDAS+VF KYL KN RKGRF  SKLK
Sbjct: 12  RLNSPSTCTVTIEVLGHELDFAQDPNSKHLGTTVWDASMVFAKYLGKNSRKGRFSSSKLK 71

Query: 65  GKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGS 124
           GKR IELGAGCGVAGF +A+LGC+V+TTDQ EVLPLLKRNVEWNTSRI QMNPGS   GS
Sbjct: 72  GKRAIELGAGCGVAGFALAMLGCDVVTTDQKEVLPLLKRNVEWNTSRIVQMNPGS-AFGS 130

Query: 125 IQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIR 183
           ++  ELDWGNEDHI AV PPFDY+IGTD VY+E LLEPLL+TI ALSGPKTT++LGYEIR
Sbjct: 131 LRVAELDWGNEDHITAVEPPFDYVIGTDVVYSEQLLEPLLRTILALSGPKTTVMLGYEIR 190

Query: 184 STSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 216
           ST VHE+MLQMWK NF VK +P++K    + +P
Sbjct: 191 STVVHEKMLQMWKDNFEVKTIPRSKMDGEYQDP 223

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542662|ref|XP_003539785.1| PREDICTED: methyltransferase-like protein 21D-like [Glycine max]

 Score =  340 bits (871), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 163/217 (75%), Positives = 185/217 (85%), Gaps = 3/217 (1%)

Query: 1   MEADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCP 60
           ME DRLNSP+T  + LEV+GH+LQFSQDPNSKHLGTTVWDAS+VFVK+LE+NCRKG+F P
Sbjct: 1   MEPDRLNSPTTFEMPLEVMGHELQFSQDPNSKHLGTTVWDASLVFVKFLERNCRKGKFSP 60

Query: 61  SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD 120
           +KLKGKRVIELGAGCGV+G GMALLGC+VI TDQ EVLPLL+RNVE N SRI+Q NP S 
Sbjct: 61  AKLKGKRVIELGAGCGVSGIGMALLGCDVIVTDQKEVLPLLQRNVERNISRITQKNPES- 119

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLG 179
             GSI+  EL WG+E HIKAV PPFDYIIGTD VY EHLLEPLLQTI ALSGP+TTI+LG
Sbjct: 120 -FGSIKVAELQWGDESHIKAVGPPFDYIIGTDVVYVEHLLEPLLQTILALSGPRTTIMLG 178

Query: 180 YEIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMWGNP 216
           YEIRSTSVHE+MLQ WK NF+VK V K+K    + +P
Sbjct: 179 YEIRSTSVHEKMLQKWKRNFDVKTVAKSKMDETFQHP 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2197234	316	AT1G73320 "AT1G73320" [Arabido	0.881	0.613	0.338	1.1e-23
TAIR|locus:2167618	234	AT5G44170 "AT5G44170" [Arabido	0.836	0.786	0.341	2.1e-22
RGD|1306228	274	Mettl21d "methyltransferase li	0.768	0.616	0.358	2.7e-20
MGI|MGI:2684917	228	Mettl21d "methyltransferase li	0.768	0.741	0.363	7.2e-20
UNIPROTKB|Q9H867	229	METTL21D "Protein-lysine methy	0.772	0.742	0.342	1.9e-19
ZFIN|ZDB-GENE-060825-19	223	mettl21d "methyltransferase li	0.781	0.771	0.331	6.5e-19
ZFIN|ZDB-GENE-050320-145	218	mettl21a "methyltransferase li	0.759	0.766	0.372	1.4e-18
UNIPROTKB|A4IGU3	215	mettl21a "Protein-lysine methy	0.777	0.795	0.314	1.8e-16
UNIPROTKB|Q8WXB1	218	METTL21A "Protein-lysine methy	0.745	0.752	0.345	4.7e-16
MGI|MGI:1914349	218	Mettl21a "methyltransferase li	0.754	0.761	0.349	7.7e-16

TAIR|locus:2197234 AT1G73320 "AT1G73320" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 72/213 (33%), Positives = 112/213 (52%)

Query:     6 LNSPSTSVINLEVLGHQLQFSQDPNSKHL----GTTVWDASVVFVKYLEKNCRKGRFCPS 61
             L + S+  + L+  GH L   Q P S +     G+ +WD+ VV  K+LE +         
Sbjct:    86 LVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVLGKFLEHSVDSKVL--- 142

Query:    62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDL 121
              L+GK+++ELG+GCG+ G   ALLG N + TD  + L LLK+N++ N  R        + 
Sbjct:   143 SLEGKKIVELGSGCGLVGCIAALLGGNAVLTDLPDRLRLLKKNIQTNLHR-------GNT 195

Query:   122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180
              GS    EL WG++     + P  DY++G+DV Y+E  +  L++T+  L   +TTI L  
Sbjct:   196 RGSAIVQELVWGDDPDPDLIEPFPDYVLGSDVIYSEEAVHHLVKTLLQLCSDQTTIFLSG 255

Query:   181 EIRSTSVHEQMLQMWKSNFNVKLVPKAKESTMW 213
             E+R+ +V E  L+    +F +  V    E T W
Sbjct:   256 ELRNDAVLEYFLETALKDFAIGRV----EQTQW 284

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2167618 AT5G44170 "AT5G44170" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 70/205 (34%), Positives = 102/205 (49%)

Query:    13 VINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEK----NCRKGRFCPSK------ 62
             VI+L V G +L   QD  S H+GT+VW  S++  K+ E+    +       P+       
Sbjct:     8 VIDLTVNGTKLSIQQDNGSMHVGTSVWPCSLILSKFAERWSTLDSSSSTTSPNPYAELFD 67

Query:    63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDL 121
              + +R IELG GCGVAG    LLG   ++ TD   V+P LK N++ N + +     G  L
Sbjct:    68 FRRRRGIELGTGCGVAGMAFYLLGLTEIVLTDIAPVMPALKHNLKRNKTAL-----GKSL 122

Query:   122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY 180
               SI    + W N D I A+ PPFD +I  DV Y E  +  L+  +  L      +LLGY
Sbjct:   123 KTSI----VYWNNRDQISALKPPFDLVIAADVVYIEESVGQLVTAMELLVADDGAVLLGY 178

Query:   181 EIRSTSVHEQMLQMWKSNFNVKLVP 205
             +IRS    +   ++    F ++ VP
Sbjct:   179 QIRSPEADKLFWELCDIVFKIEKVP 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|1306228 Mettl21d "methyltransferase like 21D" [Rattus norvegicus (taxid:10116)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 67/187 (35%), Positives = 100/187 (53%)

Query:    27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
             Q   S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct:    77 QQYGSGGVGCVVWDAAIVLAKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 135

Query:    87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
              +VI TD  E+  LLK N+  N   ++         GS+QA  L WG  D I+ +  P D
Sbjct:   136 ADVIVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWG--DDIEDLMSP-D 183

Query:   147 YIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKSNFNV 201
             YI+  D +Y E  LEPLL+T+  LSG +T+I+  YE R+      + ++  ++ + +F+ 
Sbjct:   184 YILMADCIYYEESLEPLLKTLKDLSGSETSIICCYEQRTMGKNPEIEKKYFELLQLDFDF 243

Query:   202 KLVPKAK 208
             + +P  K
Sbjct:   244 EKIPLDK 250

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

MGI|MGI:2684917 Mettl21d "methyltransferase like 21D" [Mus musculus (taxid:10090)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 68/187 (36%), Positives = 101/187 (54%)

Query:    27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
             Q   S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct:    31 QQYGSGGVGCVVWDAAIVLSKYLETPGFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query:    87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
              +VI TD  E+  LLK N++ N   ++         GS+QA  L WG ED I+ +  P D
Sbjct:    90 ADVIVTDLEELQDLLKMNIDMNKHLVT---------GSVQAKVLKWG-ED-IEDLMSP-D 137

Query:   147 YIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKSNFNV 201
             YI+  D +Y E  LEPLL+T+  LSG +T I+  YE R+      + ++  ++ + +F+ 
Sbjct:   138 YILMADCIYYEESLEPLLKTLKDLSGSETCIICCYEQRTMGKNPEIEKKYFELLQLDFDF 197

Query:   202 KLVPKAK 208
             + +P  K
Sbjct:   198 EEIPLDK 204

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018023 "peptidyl-lysine trimethylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q9H867 METTL21D "Protein-lysine methyltransferase METTL21D" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 64/187 (34%), Positives = 99/187 (52%)

Query:    27 QDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG 86
             Q  +S  +G  VWDA++V  KYLE     G    + L  + V+ELG+G G  G   A LG
Sbjct:    31 QQYSSGGVGCVVWDAAIVLSKYLETPEFSGDGAHA-LSRRSVLELGSGTGAVGLMAATLG 89

Query:    87 CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD 146
              +V+ TD  E+  LLK N+  N   ++         GS+QA  L WG E  I+    P D
Sbjct:    90 ADVVVTDLEELQDLLKMNINMNKHLVT---------GSVQAKVLKWGEE--IEGFPSPPD 138

Query:   147 YIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----VHEQMLQMWKSNFNV 201
             +I+  D +Y E  LEPLL+T+  +SG +T I+  YE R+      + ++  ++ + +F+ 
Sbjct:   139 FILMADCIYYEESLEPLLKTLKDISGFETCIICCYEQRTMGKNPEIEKKYFELLQLDFDF 198

Query:   202 KLVPKAK 208
             + +P  K
Sbjct:   199 EKIPLEK 205

GO:0005575 "cellular_component" evidence=ND

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0018023 "peptidyl-lysine trimethylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 63/190 (33%), Positives = 97/190 (51%)

Query:    34 LGTTVWDASVVFVKYLEKN--CRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVIT 91
             +G  VWDA++V  KYLE    C  G    S    K +IELGAG G+ G   A LG NV  
Sbjct:    33 VGCVVWDAAIVLSKYLETEQFCSIGSGV-SMWSSKNIIELGAGTGLVGLVAASLGANVTL 91

Query:    92 TDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 151
             TD  ++ PLL+ N++ N   I          GS+ A  L WG   ++    P   YI+  
Sbjct:    92 TDLEDLQPLLQLNIKKNQQLIHT--------GSVTAKVLKWGA--NVDDFLPHPHYILMA 141

Query:   152 D-VYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQM----LQMWKSNFNVKLVPK 206
             D +Y E  +EPL++T+  L+GP+T I+  YE R+  V+ ++     ++   +F  + +  
Sbjct:   142 DCIYYEQSVEPLVETLKLLAGPETCIICCYEQRTVGVNPEIEKRFFELLLQDFQSEEISS 201

Query:   207 AKESTMWGNP 216
              K+   + +P
Sbjct:   202 EKQDPEFNSP 211

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 69/185 (37%), Positives = 90/185 (48%)

Query:    21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
             H+++ SQD     +   VWDA+VV   +LE     G+     LKGKRVIELGAG G+ G 
Sbjct:    29 HRIRLSQDWKRLGVAAVVWDAAVVLCMFLEM----GKV---DLKGKRVIELGAGTGLVGI 81

Query:    81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140
               ALLG NV  TD+   L  L  NV  N  +  Q         ++Q  EL WG    +  
Sbjct:    82 VAALLGANVTITDREPALEFLTANVHENIPQGRQK--------AVQVSELTWGENLDLYP 133

Query:   141 VAPPFDYIIGTD-VYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF 199
                 +D I+G D VY E     LLQT+  LS   T +LL   IR     E+ L   +  F
Sbjct:   134 QGG-YDLILGADIVYLEETFPALLQTLEHLSSGDTVVLLSCRIRYER-DERFLTELRQRF 191

Query:   200 NVKLV 204
             +V+ V
Sbjct:   192 SVQEV 196

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A4IGU3 mettl21a "Protein-lysine methyltransferase METTL21A" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 60/191 (31%), Positives = 91/191 (47%)

Query:    12 SVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIEL 71
             S  + + + H ++  QD     +   VWDA++V   YLE    +G      L+   VIEL
Sbjct:    20 SSASFKFVNHNIEIKQDWKQLGVAAVVWDAALVLCMYLES---EG----IHLQNSSVIEL 72

Query:    72 GAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD 131
             GAG G+ G   ALLG  V  TD+   +  L+ NV  N  +        D L  +    L+
Sbjct:    73 GAGTGLVGIVAALLGAQVTITDRDLAMEFLRMNVRDNIPK--------DSLHRVSVRALN 124

Query:   132 WGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQ 190
             WG    ++  +  +D+I+G D+ Y E     LLQT   LS  ++ ILL   +R    H+ 
Sbjct:   125 WGKS--LEEFST-YDFILGADIIYLEETFPDLLQTFLHLSSQQSVILLSSRLRYQRDHD- 180

Query:   191 MLQMWKSNFNV 201
              L+M K +F +
Sbjct:   181 FLEMMKLHFTI 191

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0018022 "peptidyl-lysine methylation" evidence=ISS

UNIPROTKB|Q8WXB1 METTL21A "Protein-lysine methyltransferase METTL21A" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 65/188 (34%), Positives = 90/188 (47%)

Query:    21 HQLQFSQDPNSKHLGTT--VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVA 78
             H +Q  QD   +HLG    VWDA++V   YLE           +L+G+  +ELGAG G+ 
Sbjct:    29 HTIQIRQD--WRHLGVAAVVWDAAIVLSTYLEMGA-------VELRGRSAVELGAGTGLV 79

Query:    79 GFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI 138
             G   ALLG +V  TD+   L  LK NV+ N      + P       ++  EL WG   ++
Sbjct:    80 GIVAALLGAHVTITDRKVALEFLKSNVQAN------LPPHIQTKTVVK--ELTWGQ--NL 129

Query:   139 KAVAP-PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK 196
              + +P  FD I+G D+ Y E     LLQT+  L    + ILL   IR        L M +
Sbjct:   130 GSFSPGEFDLILGADIIYLEETFTDLLQTLEHLCSNHSVILLACRIRYER-DNNFLAMLE 188

Query:   197 SNFNVKLV 204
               F V+ V
Sbjct:   189 RQFTVRKV 196

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0006479 "protein methylation" evidence=IDA

GO:0018022 "peptidyl-lysine methylation" evidence=IDA

MGI|MGI:1914349 Mettl21a "methyltransferase like 21A" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 65/186 (34%), Positives = 85/186 (45%)

Query:    21 HQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGF 80
             H +Q  QD     +   VWDA+VV   YLE           +L+G   +ELGAG G+ G 
Sbjct:    29 HTIQIRQDWRQLGVAAVVWDAAVVLSMYLEMGA-------VELRGCSAVELGAGTGLVGI 81

Query:    81 GMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA 140
               ALLG  V  TD+   L  LK NVE N      + P + +       EL WG   ++++
Sbjct:    82 VAALLGAQVTITDRKVALEFLKSNVEANLP--PHIQPKAVVK------ELTWGQ--NLES 131

Query:   141 VAP-PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSN 198
              +P  FD I+G DV Y E     LLQT+  L    + ILL   IR        L M +  
Sbjct:   132 FSPGEFDLILGADVIYLEDTFTDLLQTLGHLCSNNSVILLACRIRYER-DSNFLTMLERQ 190

Query:   199 FNVKLV 204
             F V  V
Sbjct:   191 FTVSKV 196

GO:0005575 "cellular_component" evidence=ND

GO:0006479 "protein methylation" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00022174001 SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (282 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	2e-33
COG3897	218	COG3897, COG3897, Predicted methyltransferase [Gen	3e-05
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	4e-04
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	8e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	0.002

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score =  117 bits (295), Expect = 2e-33
 Identities = 57/154 (37%), Positives = 76/154 (49%), Gaps = 18/154 (11%)

Query: 35  GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITT 92
           G  VWDA+VV  KYLE    K     + L G  V+ELG+G G+ G  +ALL  G +V  T
Sbjct: 18  GGHVWDAAVVLSKYLEM---KITPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTIT 74

Query: 93  DQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP-PFDYIIGT 151
           D  E + L+K+N+E N            L   + A  LDWG +       P P D I+  
Sbjct: 75  DLEEAIELMKKNIELNG-----------LSSKVTAKVLDWGEDLPDDVFDPHPVDLILAA 123

Query: 152 D-VYAEHLLEPLLQTIFALSGPKTTILLGYEIRS 184
           D VY E     L +T+  L G +T IL+ Y+ R 
Sbjct: 124 DCVYNEDSFPLLEKTLNDLLGKETVILVAYKKRR 157

Length = 170

>gnl|CDD|226413 COG3897, COG3897, Predicted methyltransferase [General function prediction only]

 Score = 43.2 bits (102), Expect = 3e-05
 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 29/144 (20%)

Query: 39  WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEV 97
           W    V  +Y++ +       P  ++GKRV++LGAG G+     A  G   V+  D    
Sbjct: 61  WAGGQVLARYIDDH-------PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPW 113

Query: 98  L-PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAE 156
           L   ++ N   N   I      +DL+GS                  P FD ++  D++  
Sbjct: 114 LEQAIRLNAAANGVSILFT--HADLIGS-----------------PPAFDLLLAGDLFYN 154

Query: 157 H-LLEPLLQTIFALSGPKTTILLG 179
           H   + L+     L+     +L+G
Sbjct: 155 HTEADRLIPWKDRLAEAGAAVLVG 178

Length = 218

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 18/73 (24%)

Query: 63  LKGKRVIELGAGCGVAGFGMALLG-CNVITTD-QIEVLPLLKRN-------VEWNTSRIS 113
           L+GK V++LGAG G+   G ALLG   V+  D   E L + + N       VE+  + +S
Sbjct: 44  LEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVS 103

Query: 114 Q---------MNP 117
                     MNP
Sbjct: 104 DFRGKFDTVIMNP 116

Length = 198

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 27/118 (22%), Positives = 42/118 (35%), Gaps = 20/118 (16%)

Query: 64  KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD 120
            G RV+++G G G     +A L  G  V   D   E+L L + N +              
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK------------LA 48

Query: 121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILL 178
           L   I  V+ D  +      +   FD +          L  LL  + +L  P   ++L
Sbjct: 49  LGPRITFVQGDAPDAL---DLLEGFDAVF--IGGGGGDLLELLDALASLLKPGGRLVL 101

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 31/124 (25%)

Query: 57  RFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMN 116
           R  P    G RV+++G G G+    +   G +V   D                       
Sbjct: 15  RLLPRLKPGGRVLDIGCGTGILLRLLRERGFDVTGVD----------------------- 51

Query: 117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEP--LLQTIFALSGPKT 174
                      +     +      +A  +D I   +V  EHL +P  LLQ +  L  P  
Sbjct: 52  -----PSPAAVLIFSLFDAPDPAVLAGKYDLITAFEVL-EHLPDPPALLQQLRELLKPGG 105

Query: 175 TILL 178
            +L+
Sbjct: 106 VLLI 109

This family appears to be a methyltransferase domain. Length = 154

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.98
KOG3201	201	consensus Uncharacterized conserved protein [Funct	99.83
COG4123	248	Predicted O-methyltransferase [General function pr	99.82
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	99.82
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.81
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.78
COG3897	218	Predicted methyltransferase [General function pred	99.78
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.78
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.75
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.75
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.73
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.73
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.7
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.69
PRK14967	223	putative methyltransferase; Provisional	99.68
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.67
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.67
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.67
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.64
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.64
PRK11207	197	tellurite resistance protein TehB; Provisional	99.63
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.62
PRK14968	188	putative methyltransferase; Provisional	99.62
PLN02244	340	tocopherol O-methyltransferase	99.6
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.59
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.59
COG2890	280	HemK Methylase of polypeptide chain release factor	99.58
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.58
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.58
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.58
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.58
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.58
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.56
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.56
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.55
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.55
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.55
PRK12335	287	tellurite resistance protein TehB; Provisional	99.54
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.54
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.54
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.53
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.53
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.52
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.52
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.51
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.51
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.5
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.5
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.5
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.5
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.5
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.49
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.48
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.48
PLN02336	475	phosphoethanolamine N-methyltransferase	99.47
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.47
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.47
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.46
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.46
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.46
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.46
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.46
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.45
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.45
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.45
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.44
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.44
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.44
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.44
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.44
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.42
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.42
PLN02490	340	MPBQ/MSBQ methyltransferase	99.42
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.42
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.42
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.41
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.41
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.41
PRK04266	226	fibrillarin; Provisional	99.41
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.41
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.41
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.4
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.4
PLN02672	1082	methionine S-methyltransferase	99.39
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.39
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.38
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.37
PRK08317	241	hypothetical protein; Provisional	99.37
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.36
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.35
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.35
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.35
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.35
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.34
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.34
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.34
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.34
KOG1271	227	consensus Methyltransferases [General function pre	99.33
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.33
PRK05785	226	hypothetical protein; Provisional	99.32
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.32
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.31
PRK07402	196	precorrin-6B methylase; Provisional	99.31
KOG2904	328	consensus Predicted methyltransferase [General fun	99.29
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.29
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.28
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.27
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.27
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.26
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.24
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.24
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.24
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.24
PRK06922	677	hypothetical protein; Provisional	99.23
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.23
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.22
PLN03075	296	nicotianamine synthase; Provisional	99.22
PLN02336	475	phosphoethanolamine N-methyltransferase	99.22
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.22
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.21
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.21
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.21
PTZ00146	293	fibrillarin; Provisional	99.2
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.19
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.19
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.19
PHA03412	241	putative methyltransferase; Provisional	99.19
PHA03411	279	putative methyltransferase; Provisional	99.19
PRK04457	262	spermidine synthase; Provisional	99.18
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.17
PRK06202	232	hypothetical protein; Provisional	99.17
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.17
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.16
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.16
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.15
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.15
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.15
TIGR00438	188	rrmJ cell division protein FtsJ.	99.13
KOG4300	252	consensus Predicted methyltransferase [General fun	99.13
TIGR03438	301	probable methyltransferase. This model represents	99.13
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.12
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.12
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.12
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.11
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.09
PLN02476	278	O-methyltransferase	99.09
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.08
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.06
KOG2920	282	consensus Predicted methyltransferase [General fun	99.04
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.04
COG4122	219	Predicted O-methyltransferase [General function pr	99.03
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.99
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.99
PRK00811	283	spermidine synthase; Provisional	98.95
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.95
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.94
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.93
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.92
KOG2361	264	consensus Predicted methyltransferase [General fun	98.92
PRK04148	134	hypothetical protein; Provisional	98.91
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.91
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.9
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.9
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.9
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.89
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.87
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.87
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.86
PRK03612	521	spermidine synthase; Provisional	98.86
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.85
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.85
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.85
KOG3010	261	consensus Methyltransferase [General function pred	98.81
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.81
KOG2899	288	consensus Predicted methyltransferase [General fun	98.78
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.75
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.72
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.7
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.67
PRK01581	374	speE spermidine synthase; Validated	98.67
PLN02366	308	spermidine synthase	98.67
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.66
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.65
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.63
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.62
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.56
COG2520	341	Predicted methyltransferase [General function pred	98.55
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.54
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.51
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.51
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.5
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.48
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.46
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.46
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.44
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.42
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.42
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.41
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.41
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.37
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.33
PLN02823	336	spermine synthase	98.31
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.29
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.22
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.21
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.21
COG4076	252	Predicted RNA methylase [General function predicti	98.19
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.19
COG2521	287	Predicted archaeal methyltransferase [General func	98.17
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.15
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.13
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.12
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.11
KOG1501	636	consensus Arginine N-methyltransferase [General fu	98.08
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.06
KOG2940	325	consensus Predicted methyltransferase [General fun	98.04
PRK00536	262	speE spermidine synthase; Provisional	98.03
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.01
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.01
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.99
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.97
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.92
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.92
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.86
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.84
KOG2497	262	consensus Predicted methyltransferase [General fun	97.84
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.82
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.78
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.74
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.74
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.69
PHA01634	156	hypothetical protein	97.66
PF13679	141	Methyltransf_32: Methyltransferase domain	97.65
PRK10742	250	putative methyltransferase; Provisional	97.65
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.63
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.6
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.59
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.52
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.51
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.48
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.47
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.44
KOG2730	263	consensus Methylase [General function prediction o	97.43
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	97.42
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.33
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	97.33
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.08
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.05
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.96
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	96.93
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	96.92
COG1568	354	Predicted methyltransferases [General function pre	96.87
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.75
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.7
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.64
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.51
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.38
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	96.36
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.33
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.32
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.28
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.21
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.16
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.98
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.94
KOG2078	495	consensus tRNA modification enzyme [RNA processing	95.94
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	95.93
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	95.83
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	95.83
KOG1227	351	consensus Putative methyltransferase [General func	95.45
KOG3115	249	consensus Methyltransferase-like protein [General	95.38
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.29
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	95.28
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.05
PRK11524	284	putative methyltransferase; Provisional	94.99
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	94.83
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	94.76
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	94.72
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	94.71
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	94.7
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	94.58
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	94.5
PRK13699	227	putative methylase; Provisional	94.44
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	94.19
PLN02668	386	indole-3-acetate carboxyl methyltransferase	94.14
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	94.13
KOG4058	199	consensus Uncharacterized conserved protein [Funct	93.91
KOG3350	217	consensus Uncharacterized conserved protein [Funct	93.89
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	93.79
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	93.63
KOG1331	293	consensus Predicted methyltransferase [General fun	93.58
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	93.39
COG2961	279	ComJ Protein involved in catabolism of external DN	93.04
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	93.0
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	92.95
KOG2912	419	consensus Predicted DNA methylase [Function unknow	92.8
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.73
KOG2352	482	consensus Predicted spermine/spermidine synthase [	92.55
PRK11524	284	putative methyltransferase; Provisional	92.44
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.25
COG0286	489	HsdM Type I restriction-modification system methyl	91.73
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	91.58
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.58
PRK13699	227	putative methylase; Provisional	91.23
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	91.11
KOG3924	419	consensus Putative protein methyltransferase invol	91.01
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	90.92
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	90.45
COG1255	129	Uncharacterized protein conserved in archaea [Func	90.41
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	90.12
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.11
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	89.91
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	89.36
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	89.17
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	89.01
PF06460	299	NSP13: Coronavirus NSP13; InterPro: IPR009461 This	88.86
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	88.76
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	88.6
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	88.52
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	88.52
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	88.25
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	88.05
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	87.8
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	87.77
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	87.62
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	87.6
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.59
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	87.39
PRK06124	256	gluconate 5-dehydrogenase; Provisional	86.79
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	86.74
PRK12548	289	shikimate 5-dehydrogenase; Provisional	86.62
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	86.47
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	86.39
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	86.26
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	86.25
KOG0725	270	consensus Reductases with broad range of substrate	86.04
PRK06139	330	short chain dehydrogenase; Provisional	85.97
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	85.24
PRK07063	260	short chain dehydrogenase; Provisional	84.92
PRK07326	237	short chain dehydrogenase; Provisional	84.84
PRK05867	253	short chain dehydrogenase; Provisional	84.62
PRK05854	313	short chain dehydrogenase; Provisional	84.61
PRK06701	290	short chain dehydrogenase; Provisional	84.58
PRK08862	227	short chain dehydrogenase; Provisional	84.46
PRK08339	263	short chain dehydrogenase; Provisional	84.32
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	84.18
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	84.15
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	83.98
PRK08213	259	gluconate 5-dehydrogenase; Provisional	83.63
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	83.58
PRK06949	258	short chain dehydrogenase; Provisional	83.55
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	83.55
PRK07523	255	gluconate 5-dehydrogenase; Provisional	83.21
COG4301	321	Uncharacterized conserved protein [Function unknow	83.13
PRK05876	275	short chain dehydrogenase; Provisional	83.07
PRK07062	265	short chain dehydrogenase; Provisional	82.95
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	82.94
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	82.89
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.85
PRK07109	334	short chain dehydrogenase; Provisional	82.77
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.63
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	82.44
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	82.17
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	81.96
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	81.92
PLN03209	576	translocon at the inner envelope of chloroplast su	81.89
PRK08703	239	short chain dehydrogenase; Provisional	81.83
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	81.56
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	81.53
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	81.43
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	81.05
PLN02586	360	probable cinnamyl alcohol dehydrogenase	81.04
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.81
PRK08589	272	short chain dehydrogenase; Validated	80.79
PRK06125	259	short chain dehydrogenase; Provisional	80.75
PRK05866	293	short chain dehydrogenase; Provisional	80.59
PRK08265	261	short chain dehydrogenase; Provisional	80.32
PF03269	177	DUF268: Caenorhabditis protein of unknown function	80.31
PRK07035	252	short chain dehydrogenase; Provisional	80.2
PRK07890	258	short chain dehydrogenase; Provisional	80.1

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.98  E-value=2.9e-32  Score=210.74  Aligned_cols=166  Identities=39%  Similarity=0.649  Sum_probs=104.0

Q ss_pred             CeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhh
Q 027659           20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEV   97 (220)
Q Consensus        20 ~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~   97 (220)
                      +..+.|++.. +.++|.++|+++.+|++||.++.... ..+...++++|||||||+|++|+++|.+  +++|++||++++
T Consensus         3 ~~~l~i~e~~-~~~~G~~vW~aa~~La~~l~~~~~~~-~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~   80 (173)
T PF10294_consen    3 NKTLQIEEDW-GDGTGGKVWPAALVLARYLLSHSESE-FNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEV   80 (173)
T ss_dssp             ---------------------HHHHHHHHHHH--------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-H
T ss_pred             cccccccccc-ccCCcEEEechHHHHHHHHHHhcccc-cchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccchh
Confidence            4567888887 45899999999999999999863110 1135678999999999999999999998  567999999779


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc-ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcE
Q 027659           98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTT  175 (220)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~-~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~  175 (220)
                      +++++.|++.|+..         ...++.+..++|++..... ....+||+|+++|| |+.+.+++|++++.+++++++.
T Consensus        81 l~~l~~Ni~~N~~~---------~~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~  151 (173)
T PF10294_consen   81 LELLRRNIELNGSL---------LDGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGK  151 (173)
T ss_dssp             HHHHHHHHHTT-----------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TT
T ss_pred             hHHHHHHHHhcccc---------ccccccCcEEEecCcccccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCE
Confidence            99999999999731         1468999999999854222 12468999999999 9999999999999999999999


Q ss_pred             EEEEEEecCchHHHHHHHHHhc
Q 027659          176 ILLGYEIRSTSVHEQMLQMWKS  197 (220)
Q Consensus       176 ~~i~~~~r~~~~~~~f~~~~~~  197 (220)
                      ++++++.|... ...|++++++
T Consensus       152 vl~~~~~R~~~-~~~F~~~~~k  172 (173)
T PF10294_consen  152 VLLAYKRRRKS-EQEFFDRLKK  172 (173)
T ss_dssp             EEEEEE-S-TG-GCHHHHHH--
T ss_pred             EEEEeCEecHH-HHHHHHHhhh
Confidence            99999999654 5789988864

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.83  E-value=3e-21  Score=142.89  Aligned_cols=156  Identities=24%  Similarity=0.346  Sum_probs=121.2

Q ss_pred             ccccc-ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcc-cHHHHHHHHhC--CeEEEecch-hhHHHHHHHHHH
Q 027659           33 HLGTT-VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC-GVAGFGMALLG--CNVITTDQI-EVLPLLKRNVEW  107 (220)
Q Consensus        33 ~~g~~-~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~-G~~~l~la~~g--~~v~~~D~~-~~l~~~~~n~~~  107 (220)
                      .+|.. +||++.+|+.++.++       |..++|++|||||.|- |+.|+++|...  ..|..||.+ ++++..++-+-.
T Consensus         4 ntgnvciwpseeala~~~l~~-------~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~   76 (201)
T KOG3201|consen    4 NTGNVCIWPSEEALAWTILRD-------PNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS   76 (201)
T ss_pred             CCCcEEecccHHHHHHHHHhc-------hhHHhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc
Confidence            45554 999999999999988       5778999999999995 99999999654  369999984 599998887777


Q ss_pred             hhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659          108 NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  186 (220)
Q Consensus       108 n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~  186 (220)
                      |..         ....++.+...+|.... ......+||+|+++|| |+.+..++|+++|+++|+|.|..++..|.|.. 
T Consensus        77 n~~---------s~~tsc~vlrw~~~~aq-sq~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~-  145 (201)
T KOG3201|consen   77 NMA---------SSLTSCCVLRWLIWGAQ-SQQEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ-  145 (201)
T ss_pred             ccc---------cccceehhhHHHHhhhH-HHHhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc-
Confidence            743         11234433333332222 2223569999999999 99999999999999999999999998888776 


Q ss_pred             HHHHHHHHHhc-CCeEEEeeC
Q 027659          187 VHEQMLQMWKS-NFNVKLVPK  206 (220)
Q Consensus       187 ~~~~f~~~~~~-~f~v~~v~~  206 (220)
                      ..+.|.+.++. +|.+..-+.
T Consensus       146 sL~kF~de~~~~gf~v~l~en  166 (201)
T KOG3201|consen  146 SLQKFLDEVGTVGFTVCLEEN  166 (201)
T ss_pred             hHHHHHHHHHhceeEEEeccc
Confidence            57899988865 888865443

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.82  E-value=2.6e-19  Score=143.68  Aligned_cols=158  Identities=23%  Similarity=0.283  Sum_probs=126.2

Q ss_pred             eecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc
Q 027659           17 EVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ   94 (220)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~   94 (220)
                      -..+..+.|.|.+..+.+|..    +++|+.|..-          . ..++|||||||+|++|+++|++ . ++++++|+
T Consensus        12 ~~~~~~~~I~q~~~~~~~~~D----aiLL~~~~~~----------~-~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEi   76 (248)
T COG4123          12 LFTFKQFFIIQDRCGFRYGTD----AILLAAFAPV----------P-KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEI   76 (248)
T ss_pred             cccccceEEEeCCCccccccH----HHHHHhhccc----------c-cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEe
Confidence            346788999999988888877    9999999852          2 3679999999999999999987 4 67999998


Q ss_pred             -hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCC---------------
Q 027659           95 -IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEH---------------  157 (220)
Q Consensus        95 -~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~---------------  157 (220)
                       +++.+.|++|++.|..           ..++++.+.|..+..... ...+||+|+|||+ |...               
T Consensus        77 q~~~a~~A~~nv~ln~l-----------~~ri~v~~~Di~~~~~~~-~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e  144 (248)
T COG4123          77 QEEAAEMAQRNVALNPL-----------EERIQVIEADIKEFLKAL-VFASFDLIICNPPYFKQGSRLNENPLRAIARHE  144 (248)
T ss_pred             CHHHHHHHHHHHHhCcc-----------hhceeEehhhHHHhhhcc-cccccCEEEeCCCCCCCccccCcChhhhhhhhh
Confidence             6699999999999987           679999997776654322 2347999999999 5322               


Q ss_pred             ---ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEe
Q 027659          158 ---LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV  204 (220)
Q Consensus       158 ---~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v  204 (220)
                         .++.+++...++|+++|.++++++.   +....+++.++. +|...++
T Consensus       145 ~~~~le~~i~~a~~~lk~~G~l~~V~r~---erl~ei~~~l~~~~~~~k~i  192 (248)
T COG4123         145 ITLDLEDLIRAAAKLLKPGGRLAFVHRP---ERLAEIIELLKSYNLEPKRI  192 (248)
T ss_pred             hcCCHHHHHHHHHHHccCCCEEEEEecH---HHHHHHHHHHHhcCCCceEE
Confidence               3678999999999999999998864   334677777765 6665443

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=99.82  E-value=2.2e-19  Score=144.13  Aligned_cols=169  Identities=30%  Similarity=0.463  Sum_probs=128.3

Q ss_pred             CccccccccchHHHHHHHHhhccccCCCCCCC--C--CCCcEEEeCCcccHHHHHHHH-hCCeEEEecchhhHHHHHHHH
Q 027659           31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSK--L--KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNV  105 (220)
Q Consensus        31 ~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~--~--~~~~vLELGcG~G~~~l~la~-~g~~v~~~D~~~~l~~~~~n~  105 (220)
                      .......+|+++..+++++..+..........  +  +..+|||||+|||++|+.+|. .+++|+.+|.+..++.++.|.
T Consensus        49 ~~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~  128 (248)
T KOG2793|consen   49 EQGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNR  128 (248)
T ss_pred             ccceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhh
Confidence            35677889999999999998764210000001  1  245699999999999999998 678899999999999998887


Q ss_pred             HHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC-ccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          106 EWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP-FDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       106 ~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~-fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ..|.....+.      +..+.+..++|+.........+. ||+|+++|| |.++.++.++.++..+|..++.++++++.|
T Consensus       129 ~~~~~~l~~~------g~~v~v~~L~Wg~~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr  202 (248)
T KOG2793|consen  129 DKNNIALNQL------GGSVIVAILVWGNALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLR  202 (248)
T ss_pred             hhhhhhhhhc------CCceeEEEEecCCcccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEEEecc
Confidence            7776643321      34899999999998765544445 999999999 999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHh---cCCeEEEee
Q 027659          184 STSVHEQMLQMWK---SNFNVKLVP  205 (220)
Q Consensus       184 ~~~~~~~f~~~~~---~~f~v~~v~  205 (220)
                      .....+.+.-.++   ..|++....
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~v~~~~  227 (248)
T KOG2793|consen  203 RDAAWEIEVLLFKKDLKIFDVVQES  227 (248)
T ss_pred             cchHHHHHHHHhhhhhccceeeeEe
Confidence            9754444433333   345554443

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.81  E-value=1.5e-18  Score=133.89  Aligned_cols=135  Identities=26%  Similarity=0.341  Sum_probs=105.5

Q ss_pred             EEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe--EEEecc-hhhH
Q 027659           22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVL   98 (220)
Q Consensus        22 ~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~--v~~~D~-~~~l   98 (220)
                      .+++++.|+.++. ..+-.++.+|++++...           .+++|||||||+|.+|+.+++.+..  |+++|. ++++
T Consensus         1 ~~~~~~~~gvFs~-~~~d~~t~lL~~~l~~~-----------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~   68 (170)
T PF05175_consen    1 ELEFITHPGVFSP-PRLDAGTRLLLDNLPKH-----------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDAL   68 (170)
T ss_dssp             EEEEEEETTSTTT-TSHHHHHHHHHHHHHHH-----------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHH
T ss_pred             CEEEEECCCeeCC-CCCCHHHHHHHHHHhhc-----------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence            3678888877753 34556788999999865           5678999999999999999998765  999998 6699


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCC-----ChHHHHHHHHHhhCC
Q 027659           99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEH-----LLEPLLQTIFALSGP  172 (220)
Q Consensus        99 ~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~-----~~~~l~~~l~~~l~~  172 (220)
                      +.+++|++.|+.            .++++...|+.+..    ...+||+|++|++ +...     ....+++...++|+|
T Consensus        69 ~~a~~n~~~n~~------------~~v~~~~~d~~~~~----~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~  132 (170)
T PF05175_consen   69 ELAKRNAERNGL------------ENVEVVQSDLFEAL----PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKP  132 (170)
T ss_dssp             HHHHHHHHHTTC------------TTEEEEESSTTTTC----CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEE
T ss_pred             HHHHHHHHhcCc------------cccccccccccccc----cccceeEEEEccchhcccccchhhHHHHHHHHHHhccC
Confidence            999999999986            23788877765432    2579999999999 4443     367888888999999


Q ss_pred             CcEEEEEEEecC
Q 027659          173 KTTILLGYEIRS  184 (220)
Q Consensus       173 ~g~~~i~~~~r~  184 (220)
                      ||.++++.....
T Consensus       133 ~G~l~lv~~~~~  144 (170)
T PF05175_consen  133 GGRLFLVINSHL  144 (170)
T ss_dssp             EEEEEEEEETTS
T ss_pred             CCEEEEEeecCC
Confidence            999998776544

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.78  E-value=2.5e-18  Score=142.50  Aligned_cols=154  Identities=21%  Similarity=0.346  Sum_probs=114.7

Q ss_pred             cCeEEEEEeCCC-CccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-h
Q 027659           19 LGHQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-I   95 (220)
Q Consensus        19 ~~~~~~i~~~~~-~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~   95 (220)
                      ...++.|.-+|+ .|++|.+  +++.+..++|.+.         ..+|++|||+|||+|+++++++++|++ |+++|+ +
T Consensus       126 ~~~~~~I~idPg~AFGTG~H--~TT~lcl~~l~~~---------~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp  194 (295)
T PF06325_consen  126 PPDEIVIEIDPGMAFGTGHH--PTTRLCLELLEKY---------VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDP  194 (295)
T ss_dssp             STTSEEEEESTTSSS-SSHC--HHHHHHHHHHHHH---------SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSC
T ss_pred             CCCcEEEEECCCCcccCCCC--HHHHHHHHHHHHh---------ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCH
Confidence            345677777884 4666655  8999999999876         347789999999999999999999995 999999 6


Q ss_pred             hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcE
Q 027659           96 EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTT  175 (220)
Q Consensus        96 ~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~  175 (220)
                      .+++.+++|++.|+.           ..++.+.     .....  ...+||+|++|=.  ...+..++..+.++++|||.
T Consensus       195 ~Av~~a~~N~~~N~~-----------~~~~~v~-----~~~~~--~~~~~dlvvANI~--~~vL~~l~~~~~~~l~~~G~  254 (295)
T PF06325_consen  195 LAVEAARENAELNGV-----------EDRIEVS-----LSEDL--VEGKFDLVVANIL--ADVLLELAPDIASLLKPGGY  254 (295)
T ss_dssp             HHHHHHHHHHHHTT------------TTCEEES-----CTSCT--CCS-EEEEEEES---HHHHHHHHHHCHHHEEEEEE
T ss_pred             HHHHHHHHHHHHcCC-----------CeeEEEE-----Eeccc--ccccCCEEEECCC--HHHHHHHHHHHHHhhCCCCE
Confidence            699999999999998           3445442     11111  2489999999866  33356777778888999999


Q ss_pred             EEEEEEecCchHHHHHHHHHhcCCeEEEee
Q 027659          176 ILLGYEIRSTSVHEQMLQMWKSNFNVKLVP  205 (220)
Q Consensus       176 ~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~  205 (220)
                      ++++.-....  ...+.+.++++|++....
T Consensus       255 lIlSGIl~~~--~~~v~~a~~~g~~~~~~~  282 (295)
T PF06325_consen  255 LILSGILEEQ--EDEVIEAYKQGFELVEER  282 (295)
T ss_dssp             EEEEEEEGGG--HHHHHHHHHTTEEEEEEE
T ss_pred             EEEccccHHH--HHHHHHHHHCCCEEEEEE
Confidence            9998877655  356677776688876543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=99.78  E-value=5.8e-19  Score=134.91  Aligned_cols=128  Identities=25%  Similarity=0.413  Sum_probs=109.8

Q ss_pred             ccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhh
Q 027659           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNT  109 (220)
Q Consensus        32 ~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~  109 (220)
                      ..++...|.+++.+++|+..+       |+.++|++|||+|+|+|+.++++++.|++ |+.+|+ +..+..++.|++.|+
T Consensus        54 Ppfwa~~WagG~~lAR~i~~~-------PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~ang  126 (218)
T COG3897          54 PPFWAFAWAGGQVLARYIDDH-------PETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANG  126 (218)
T ss_pred             chHHHHHHhhhHHHHHHHhcC-------ccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhcc
Confidence            457889999999999999998       78999999999999999999999999996 999999 668899999999998


Q ss_pred             hhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      .             .+.+...|-..      .+..||+|+++|+ |+......++.+..++...|-.+++..+.|..
T Consensus       127 v-------------~i~~~~~d~~g------~~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~  184 (218)
T COG3897         127 V-------------SILFTHADLIG------SPPAFDLLLAGDLFYNHTEADRLIPWKDRLAEAGAAVLVGDPGRAY  184 (218)
T ss_pred             c-------------eeEEeeccccC------CCcceeEEEeeceecCchHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence            6             56666644332      3678999999999 99999999999777776777777777777764

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.78  E-value=8.5e-18  Score=138.30  Aligned_cols=157  Identities=24%  Similarity=0.321  Sum_probs=118.2

Q ss_pred             eEEEEEeCCC-CccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhh
Q 027659           21 HQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV   97 (220)
Q Consensus        21 ~~~~i~~~~~-~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~   97 (220)
                      ..+.|+-+|+ .+++|.  .|++.+..++|.+.         ..+|++|||+|||+|+++++++++|++ |+++|+ |.+
T Consensus       129 ~~~~i~lDPGlAFGTG~--HpTT~lcL~~Le~~---------~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~A  197 (300)
T COG2264         129 DELNIELDPGLAFGTGT--HPTTSLCLEALEKL---------LKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQA  197 (300)
T ss_pred             CceEEEEccccccCCCC--ChhHHHHHHHHHHh---------hcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHH
Confidence            4677777884 355554  48999999999875         348899999999999999999999996 999999 559


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEE
Q 027659           98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      ++.++.|++.|+..           ..+....   ...... ...++||+|++|=.  .+-+..|...+..+++|||.++
T Consensus       198 V~aa~eNa~~N~v~-----------~~~~~~~---~~~~~~-~~~~~~DvIVANIL--A~vl~~La~~~~~~lkpgg~lI  260 (300)
T COG2264         198 VEAARENARLNGVE-----------LLVQAKG---FLLLEV-PENGPFDVIVANIL--AEVLVELAPDIKRLLKPGGRLI  260 (300)
T ss_pred             HHHHHHHHHHcCCc-----------hhhhccc---ccchhh-cccCcccEEEehhh--HHHHHHHHHHHHHHcCCCceEE
Confidence            99999999999872           1111111   111111 12369999999876  3336688888999999999999


Q ss_pred             EEEEecCchHHHHHHHHH-hcCCeEEEeeCC
Q 027659          178 LGYEIRSTSVHEQMLQMW-KSNFNVKLVPKA  207 (220)
Q Consensus       178 i~~~~r~~~~~~~f~~~~-~~~f~v~~v~~~  207 (220)
                      ++.-....  .+.+.+.+ +.+|++..+..+
T Consensus       261 lSGIl~~q--~~~V~~a~~~~gf~v~~~~~~  289 (300)
T COG2264         261 LSGILEDQ--AESVAEAYEQAGFEVVEVLER  289 (300)
T ss_pred             EEeehHhH--HHHHHHHHHhCCCeEeEEEec
Confidence            99876554  36677777 569998776543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.75  E-value=5.2e-18  Score=134.28  Aligned_cols=108  Identities=21%  Similarity=0.258  Sum_probs=92.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +.|++|||+|||-|+++..+|+.|+.|+++|. +++++.++..+..+++             ++.+.+...   +++...
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv-------------~i~y~~~~~---edl~~~  121 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGV-------------NIDYRQATV---EDLASA  121 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccc-------------cccchhhhH---HHHHhc
Confidence            58999999999999999999999999999999 5599999999998876             344544222   223223


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  186 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~  186 (220)
                      .++||+|+|.++ .|.++.+.+++.+.+++||||.++++..+|+..
T Consensus       122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~k  167 (243)
T COG2227         122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLK  167 (243)
T ss_pred             CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHH
Confidence            479999999999 999999999999999999999999999999864

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.75  E-value=1.1e-16  Score=137.07  Aligned_cols=145  Identities=14%  Similarity=0.154  Sum_probs=110.1

Q ss_pred             ceEEEeecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeE
Q 027659           12 SVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNV   89 (220)
Q Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v   89 (220)
                      ..+++++.+..+++...++.++. .++-.++.+|.++|...           .+.+|||||||+|.+|+.+++.+  ++|
T Consensus       188 ~~~~~~~~~~~~~~~~~~gVFs~-~~LD~GtrllL~~lp~~-----------~~~~VLDLGCGtGvi~i~la~~~P~~~V  255 (378)
T PRK15001        188 QTVSWKLEGTDWTIHNHANVFSR-TGLDIGARFFMQHLPEN-----------LEGEIVDLGCGNGVIGLTLLDKNPQAKV  255 (378)
T ss_pred             ceeEEEEcCceEEEEecCCccCC-CCcChHHHHHHHhCCcc-----------cCCeEEEEeccccHHHHHHHHhCCCCEE
Confidence            34678889999999999976664 47778899988887422           23589999999999999999874  589


Q ss_pred             EEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC------ChHHH
Q 027659           90 ITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH------LLEPL  162 (220)
Q Consensus        90 ~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~------~~~~l  162 (220)
                      +++|.+ .+++.+++|++.|+..         ...++++...|....  .  ...+||+|++|++|+..      ....+
T Consensus       256 ~~vD~S~~Av~~A~~N~~~n~~~---------~~~~v~~~~~D~l~~--~--~~~~fDlIlsNPPfh~~~~~~~~ia~~l  322 (378)
T PRK15001        256 VFVDESPMAVASSRLNVETNMPE---------ALDRCEFMINNALSG--V--EPFRFNAVLCNPPFHQQHALTDNVAWEM  322 (378)
T ss_pred             EEEECCHHHHHHHHHHHHHcCcc---------cCceEEEEEcccccc--C--CCCCEEEEEECcCcccCccCCHHHHHHH
Confidence            999995 5999999999988641         012566655443221  1  24589999999995432      24578


Q ss_pred             HHHHHHhhCCCcEEEEEEE
Q 027659          163 LQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       163 ~~~l~~~l~~~g~~~i~~~  181 (220)
                      ++...++|+|||.+++...
T Consensus       323 ~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        323 FHHARRCLKINGELYIVAN  341 (378)
T ss_pred             HHHHHHhcccCCEEEEEEe
Confidence            8888999999999999864

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.73  E-value=2.3e-16  Score=122.61  Aligned_cols=135  Identities=20%  Similarity=0.241  Sum_probs=101.7

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      +.+|.+++..           .++++|||||||+|..++.++..+.+|+++|+ +++++.+++|+..++.          
T Consensus         8 ~~~l~~~l~~-----------~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~----------   66 (179)
T TIGR00537         8 SLLLEANLRE-----------LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV----------   66 (179)
T ss_pred             HHHHHHHHHh-----------cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence            5666666642           35578999999999999999998889999999 6799999999987753          


Q ss_pred             CCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCC---------------------hHHHHHHHHHhhCCCcEEEE
Q 027659          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHL---------------------LEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~---------------------~~~l~~~l~~~l~~~g~~~i  178 (220)
                         ++++...|+.+.     ..++||+|+++++ +....                     +..+++.+.++|+|||.+++
T Consensus        67 ---~~~~~~~d~~~~-----~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~  138 (179)
T TIGR00537        67 ---GLDVVMTDLFKG-----VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQL  138 (179)
T ss_pred             ---ceEEEEcccccc-----cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEE
Confidence               567777666443     2358999999988 32221                     45678888999999999998


Q ss_pred             EEEecCchHHHHHHHHHh-cCCeEEEeeCC
Q 027659          179 GYEIRSTSVHEQMLQMWK-SNFNVKLVPKA  207 (220)
Q Consensus       179 ~~~~r~~~~~~~f~~~~~-~~f~v~~v~~~  207 (220)
                      .......  ...+++.++ .+|.++.+...
T Consensus       139 ~~~~~~~--~~~~~~~l~~~gf~~~~~~~~  166 (179)
T TIGR00537       139 IQSSLNG--EPDTFDKLDERGFRYEIVAER  166 (179)
T ss_pred             EEeccCC--hHHHHHHHHhCCCeEEEEEEe
Confidence            8765443  245555554 48988887654

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=2.4e-16  Score=129.16  Aligned_cols=156  Identities=21%  Similarity=0.288  Sum_probs=113.8

Q ss_pred             ecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC--eEEEecch
Q 027659           18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQI   95 (220)
Q Consensus        18 ~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~~   95 (220)
                      ..|..++|...|+.++.+ ++..+|.+|++.|.          ....+ +|||||||.|.+|+.+|+...  +++++|.+
T Consensus       124 ~~~~~~~~~t~pGVFS~~-~lD~GS~lLl~~l~----------~~~~~-~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn  191 (300)
T COG2813         124 LLGHELTFKTLPGVFSRD-KLDKGSRLLLETLP----------PDLGG-KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVN  191 (300)
T ss_pred             hccCceEEEeCCCCCcCC-CcChHHHHHHHhCC----------ccCCC-cEEEeCCCccHHHHHHHHhCCCCeEEEEecC
Confidence            448899999999877765 77888999988884          33344 999999999999999999864  79999995


Q ss_pred             -hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCC-h----HHHHHHHHH
Q 027659           96 -EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHL-L----EPLLQTIFA  168 (220)
Q Consensus        96 -~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~-~----~~l~~~l~~  168 (220)
                       .+++.+++|+..|+..            +..+...+-.+.     ..++||+|++||+ +.... .    ..++....+
T Consensus       192 ~~Av~~ar~Nl~~N~~~------------~~~v~~s~~~~~-----v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~  254 (300)
T COG2813         192 ARAVESARKNLAANGVE------------NTEVWASNLYEP-----VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAAR  254 (300)
T ss_pred             HHHHHHHHHhHHHcCCC------------ccEEEEeccccc-----ccccccEEEeCCCccCCcchhHHHHHHHHHHHHH
Confidence             5999999999999862            222322211111     2348999999999 43322 2    378888899


Q ss_pred             hhCCCcEEEEEEEecCchHHHHHHHHHhcCCe-EEEeeCC
Q 027659          169 LSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN-VKLVPKA  207 (220)
Q Consensus       169 ~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~-v~~v~~~  207 (220)
                      .|++||.++|+.. |...    ....+++.|. ++.+.+.
T Consensus       255 ~L~~gGeL~iVan-~~l~----y~~~L~~~Fg~v~~la~~  289 (300)
T COG2813         255 HLKPGGELWIVAN-RHLP----YEKKLKELFGNVEVLAKN  289 (300)
T ss_pred             hhccCCEEEEEEc-CCCC----hHHHHHHhcCCEEEEEeC
Confidence            9999999999887 4443    2344455554 5555443

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.70  E-value=1.2e-16  Score=114.40  Aligned_cols=103  Identities=23%  Similarity=0.286  Sum_probs=83.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHH--hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||||||+|..++.+++  .+++|+++|+ +++++.+++++.....           ..++++...|+ ..  ...
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~i~~~~~d~-~~--~~~   66 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGL-----------SDRITFVQGDA-EF--DPD   66 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTT-----------TTTEEEEESCC-HG--GTT
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECcc-cc--Ccc
Confidence            467999999999999999998  6889999999 6799999999966554           57999999777 11  112


Q ss_pred             cCCCccEEEEec-C-C-CC--CChHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTD-V-Y-AE--HLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d-~-y-~~--~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ..++||+|++.. + . ..  +....+++.+.+.|+|||.+++..
T Consensus        67 ~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   67 FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            356799999998 4 2 11  346788999999999999999865

...

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.69  E-value=1.1e-15  Score=127.32  Aligned_cols=155  Identities=19%  Similarity=0.298  Sum_probs=111.9

Q ss_pred             eEEEEEeCCC-CccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhh
Q 027659           21 HQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEV   97 (220)
Q Consensus        21 ~~~~i~~~~~-~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~   97 (220)
                      ..+.+.-+|+ .+++|  .++.+.+..++|...         ..++++|||+|||+|.+++.+++.|+ +|+++|+ +.+
T Consensus       126 ~~~~i~ldpg~aFgtG--~h~tt~l~l~~l~~~---------~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~a  194 (288)
T TIGR00406       126 DALIIMLDPGLAFGTG--THPTTSLCLEWLEDL---------DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLA  194 (288)
T ss_pred             CcEEEEECCCCcccCC--CCHHHHHHHHHHHhh---------cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHH
Confidence            4456666774 34555  457788777877654         23678999999999999999999887 6999999 569


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEE
Q 027659           98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      ++.+++|+..|+.           ..++.+...+   .  .....++||+|+++-.  ...+..++..+.++|+|||.++
T Consensus       195 l~~a~~n~~~n~~-----------~~~~~~~~~~---~--~~~~~~~fDlVvan~~--~~~l~~ll~~~~~~LkpgG~li  256 (288)
T TIGR00406       195 VESARKNAELNQV-----------SDRLQVKLIY---L--EQPIEGKADVIVANIL--AEVIKELYPQFSRLVKPGGWLI  256 (288)
T ss_pred             HHHHHHHHHHcCC-----------CcceEEEecc---c--ccccCCCceEEEEecC--HHHHHHHHHHHHHHcCCCcEEE
Confidence            9999999998876           2344444322   1  1113568999999866  2235678889999999999999


Q ss_pred             EEEEecCchHHHHHHHHHhcCCeEEEeeC
Q 027659          178 LGYEIRSTSVHEQMLQMWKSNFNVKLVPK  206 (220)
Q Consensus       178 i~~~~r~~~~~~~f~~~~~~~f~v~~v~~  206 (220)
                      ++......  ...+.+.++..|++..+..
T Consensus       257 ~sgi~~~~--~~~v~~~~~~~f~~~~~~~  283 (288)
T TIGR00406       257 LSGILETQ--AQSVCDAYEQGFTVVEIRQ  283 (288)
T ss_pred             EEeCcHhH--HHHHHHHHHccCceeeEec
Confidence            98765443  3566677766687766543

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK14967 putative methyltransferase; Provisional

Probab=99.68  E-value=4.2e-15  Score=119.46  Aligned_cols=153  Identities=20%  Similarity=0.280  Sum_probs=107.4

Q ss_pred             EEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHH
Q 027659           23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL  100 (220)
Q Consensus        23 ~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~  100 (220)
                      +.+.+.++.+....    .+.+|++++...        ...++.+|||+|||+|.+++.+++.++ +|+++|+ +++++.
T Consensus         7 ~~~~~~~g~~~p~~----ds~~l~~~l~~~--------~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~   74 (223)
T PRK14967          7 DALLRAPGVYRPQE----DTQLLADALAAE--------GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRS   74 (223)
T ss_pred             ceeecCCCCcCCCC----cHHHHHHHHHhc--------ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHH
Confidence            34455554333332    367788887643        233567999999999999999998876 7999999 569999


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC----------------------C
Q 027659          101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH----------------------L  158 (220)
Q Consensus       101 ~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~----------------------~  158 (220)
                      +++|+..++.             ++.+...|+.+.  .  ..++||+|+++++|...                      .
T Consensus        75 a~~n~~~~~~-------------~~~~~~~d~~~~--~--~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (223)
T PRK14967         75 ARLNALLAGV-------------DVDVRRGDWARA--V--EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAV  137 (223)
T ss_pred             HHHHHHHhCC-------------eeEEEECchhhh--c--cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHH
Confidence            9999988754             467777666442  1  24689999999874322                      1


Q ss_pred             hHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEeeC
Q 027659          159 LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPK  206 (220)
Q Consensus       159 ~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v~~  206 (220)
                      +..+++.+.++|++||.+++.......  ...+++.++. +|.++.+..
T Consensus       138 ~~~~l~~a~~~Lk~gG~l~~~~~~~~~--~~~~~~~l~~~g~~~~~~~~  184 (223)
T PRK14967        138 LDRLCDAAPALLAPGGSLLLVQSELSG--VERTLTRLSEAGLDAEVVAS  184 (223)
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEecccC--HHHHHHHHHHCCCCeEEEEe
Confidence            456778888999999999987765533  2455566643 677665543

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.67  E-value=7.4e-17  Score=128.75  Aligned_cols=111  Identities=17%  Similarity=0.266  Sum_probs=86.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..|++|||+|||+|+++.-+|+.|+.|+++|. +++++.++.....+-....      ...-++++...+...      .
T Consensus        88 ~~g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~------~~~y~l~~~~~~~E~------~  155 (282)
T KOG1270|consen   88 LLGMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEG------AIAYRLEYEDTDVEG------L  155 (282)
T ss_pred             cCCceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhcc------ccceeeehhhcchhh------c
Confidence            35788999999999999999999999999998 6799999988555433210      000123333322222      2


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      .++||.|+|+++ .|..+++.+++.+.++|+|+|.++|+...|.-
T Consensus       156 ~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~  200 (282)
T KOG1270|consen  156 TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTI  200 (282)
T ss_pred             ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence            456999999999 99999999999999999999999999988864

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.67  E-value=9.4e-16  Score=116.01  Aligned_cols=109  Identities=22%  Similarity=0.280  Sum_probs=91.4

Q ss_pred             CCCcEEEeCCcccHHHHHHH-Hh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMA-LL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la-~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++.+|||||||+|..+..++ ..  +++|+++|+ +++++.++.+++.++.            .++++...|+.+.... 
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------------~ni~~~~~d~~~l~~~-   69 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------------DNIEFIQGDIEDLPQE-   69 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------------TTEEEEESBTTCGCGC-
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------------cccceEEeehhccccc-
Confidence            56899999999999999999 44  568999999 6799999999998875            4899999888763221 


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  186 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~  186 (220)
                      . .+.||+|+++.+ ++......+++.+.++|+++|.+++.......+
T Consensus        70 ~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~~~~~  116 (152)
T PF13847_consen   70 L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPNHNDE  116 (152)
T ss_dssp             S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEEHSHH
T ss_pred             c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECChHHH
Confidence            1 279999999999 888888999999999999999999988874443

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.67  E-value=4.5e-16  Score=130.96  Aligned_cols=108  Identities=17%  Similarity=0.262  Sum_probs=89.4

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++.+|||||||+|.++..+++.|++|+++|. +++++.+++++..+..           ..++.+...+.   +.++..
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~-----------~~~i~~~~~da---e~l~~~  195 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPV-----------TSTIEYLCTTA---EKLADE  195 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-----------ccceeEEecCH---HHhhhc
Confidence            46789999999999999999999999999998 6799999988665533           24677777443   333334


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      .++||+|++.++ ++..+...+++.+.++|+|||.++++...|.
T Consensus       196 ~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr~  239 (322)
T PLN02396        196 GRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINRT  239 (322)
T ss_pred             cCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence            578999999999 9888999999999999999999999876654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.64  E-value=8.9e-15  Score=119.56  Aligned_cols=149  Identities=21%  Similarity=0.338  Sum_probs=106.7

Q ss_pred             eEEEEEeCCC-CccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhh
Q 027659           21 HQLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEV   97 (220)
Q Consensus        21 ~~~~i~~~~~-~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~   97 (220)
                      ....+.-+|+ .+++|  ..+.+..+.+++...         ..++++|||+|||+|.+++.+++.|+. |+++|+ +.+
T Consensus        86 ~~~~i~i~p~~afgtg--~h~tt~~~l~~l~~~---------~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~  154 (250)
T PRK00517         86 DEINIELDPGMAFGTG--THPTTRLCLEALEKL---------VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQA  154 (250)
T ss_pred             CeEEEEECCCCccCCC--CCHHHHHHHHHHHhh---------cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHH
Confidence            3345555663 34555  468888888888753         236789999999999999999988875 999999 569


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEE
Q 027659           98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      ++.+++|++.|+.           ..++.+..   +        ..+||+|+++-.  ...+..++..+.++|+|||.++
T Consensus       155 l~~A~~n~~~~~~-----------~~~~~~~~---~--------~~~fD~Vvani~--~~~~~~l~~~~~~~LkpgG~li  210 (250)
T PRK00517        155 VEAARENAELNGV-----------ELNVYLPQ---G--------DLKADVIVANIL--ANPLLELAPDLARLLKPGGRLI  210 (250)
T ss_pred             HHHHHHHHHHcCC-----------CceEEEcc---C--------CCCcCEEEEcCc--HHHHHHHHHHHHHhcCCCcEEE
Confidence            9999999998865           12233221   1        127999998754  2235678889999999999999


Q ss_pred             EEEEecCchHHHHHHHHHh-cCCeEEEeeC
Q 027659          178 LGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  206 (220)
Q Consensus       178 i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~  206 (220)
                      ++......  ...+.+.++ .+|++..+..
T Consensus       211 lsgi~~~~--~~~v~~~l~~~Gf~~~~~~~  238 (250)
T PRK00517        211 LSGILEEQ--ADEVLEAYEEAGFTLDEVLE  238 (250)
T ss_pred             EEECcHhh--HHHHHHHHHHCCCEEEEEEE
Confidence            98655433  345556664 4788866543

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.64  E-value=1e-14  Score=113.51  Aligned_cols=129  Identities=18%  Similarity=0.177  Sum_probs=93.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .++.+|||+|||+|..++.++..+  ++|+++|. +++++.+++|++.++.            .++++...|+.+..   
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~------------~~i~~i~~d~~~~~---  105 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL------------NNVEIVNGRAEDFQ---  105 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC------------CCeEEEecchhhcc---
Confidence            357899999999999999998764  47999998 5699999999988764            36888887765531   


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEEeeCCCCC
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKES  210 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~v~~~~~~  210 (220)
                       ..++||+|+++..   ..++.+++.+.++|+|||.+++.+............+.+ -.+|+..+.+.-..+
T Consensus       106 -~~~~fD~I~s~~~---~~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~  173 (181)
T TIGR00138       106 -HEEQFDVITSRAL---ASLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQVLGVEPLEVPPLTGP  173 (181)
T ss_pred             -ccCCccEEEehhh---hCHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhhcCceEeeccccCCC
Confidence             2568999998653   346778888999999999999875433332222333333 247877766554443

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.63  E-value=6.2e-15  Score=116.33  Aligned_cols=100  Identities=20%  Similarity=0.255  Sum_probs=81.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+.+|||+|||+|..++.+|+.|.+|+++|. +++++.++++++.++.            .++.+...|+.+..    ..
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~~----~~   93 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL------------DNLHTAVVDLNNLT----FD   93 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CcceEEecChhhCC----cC
Confidence            5679999999999999999999999999999 6699999999887654            35677776654331    24


Q ss_pred             CCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEE
Q 027659          143 PPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      +.||+|+++.+ ++.  .....+++.+.++|+|||.+++.
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~  133 (197)
T PRK11207         94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIV  133 (197)
T ss_pred             CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            57999999998 543  35789999999999999986543

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.62  E-value=4.4e-15  Score=121.69  Aligned_cols=107  Identities=22%  Similarity=0.260  Sum_probs=88.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..++.+++.|.+|+++|. +++++.+++++...+.           ..++++...+..+...  ...
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~-----------~~~v~~~~~d~~~l~~--~~~  110 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGV-----------SDNMQFIHCAAQDIAQ--HLE  110 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccceEEEEcCHHHHhh--hcC
Confidence            4579999999999999999999999999999 6799999999887764           3567887766544321  235


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      +.||+|+++.+ ++......+++.+.++|+|||.+++.....
T Consensus       111 ~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~  152 (255)
T PRK11036        111 TPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNA  152 (255)
T ss_pred             CCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECc
Confidence            78999999999 777778899999999999999998876543

>PRK14968 putative methyltransferase; Provisional

Probab=99.62  E-value=2.4e-14  Score=111.63  Aligned_cols=141  Identities=21%  Similarity=0.281  Sum_probs=101.6

Q ss_pred             cchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        39 W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      ++.+.+|++++..           .++++|||+|||+|..++.++..+.+|+++|. +++++.+++|+..++..      
T Consensus         9 ~~~~~~l~~~~~~-----------~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~------   71 (188)
T PRK14968          9 AEDSFLLAENAVD-----------KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR------   71 (188)
T ss_pred             chhHHHHHHhhhc-----------cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC------
Confidence            4557777777753           36779999999999999999988889999999 67999999999887651      


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCC----------------------CChHHHHHHHHHhhCCCcE
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAE----------------------HLLEPLLQTIFALSGPKTT  175 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~----------------------~~~~~l~~~l~~~l~~~g~  175 (220)
                          ...+.+...|+.+..    ....||+|+++++|..                      ..+..+++.+.++|+|+|.
T Consensus        72 ----~~~~~~~~~d~~~~~----~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~  143 (188)
T PRK14968         72 ----NNGVEVIRSDLFEPF----RGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGR  143 (188)
T ss_pred             ----CcceEEEeccccccc----cccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeE
Confidence                112677776665432    2347999999887322                      1145678889999999999


Q ss_pred             EEEEEEecCchHHHHHHHHHh-cCCeEEEeeC
Q 027659          176 ILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  206 (220)
Q Consensus       176 ~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~  206 (220)
                      +++.......  .+.+.+.+. .+|++..+..
T Consensus       144 ~~~~~~~~~~--~~~l~~~~~~~g~~~~~~~~  173 (188)
T PRK14968        144 ILLLQSSLTG--EDEVLEYLEKLGFEAEVVAE  173 (188)
T ss_pred             EEEEEcccCC--HHHHHHHHHHCCCeeeeeee
Confidence            8887654322  234455554 4787766543

>PLN02244 tocopherol O-methyltransferase

Probab=99.60  E-value=2.5e-14  Score=121.83  Aligned_cols=104  Identities=15%  Similarity=0.084  Sum_probs=87.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .++.+|||||||+|..+..+++. +++|+++|+ +.+++.++++++.++.           ..++++...|..+   .+.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~-----------~~~v~~~~~D~~~---~~~  182 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGL-----------SDKVSFQVADALN---QPF  182 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcCccc---CCC
Confidence            46789999999999999999975 789999999 5699999998887765           3578888866543   333


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .++.||+|++..+ ++..+...+++.+.++|+|||.++++.
T Consensus       183 ~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        183 EDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            4678999999999 777788999999999999999999865

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.59  E-value=1.8e-14  Score=113.46  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=78.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+.+|||+|||+|..++.+|+.|.+|+++|+ +.+++.++++++.++.             ++.+...|....   + .+
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~---~-~~   92 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL-------------PLRTDAYDINAA---A-LN   92 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC-------------CceeEeccchhc---c-cc
Confidence            4579999999999999999999999999999 5699999998877654             345555444321   1 24


Q ss_pred             CCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEE
Q 027659          143 PPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ++||+|+++.+ ++.  .....+++.+.++|+|||.+++.
T Consensus        93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            57999999998 433  45788999999999999986554

Part of a tellurite-reducing operon tehA and tehB

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.59  E-value=4.9e-14  Score=119.79  Aligned_cols=131  Identities=14%  Similarity=0.131  Sum_probs=96.7

Q ss_pred             EEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhH
Q 027659           22 QLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVL   98 (220)
Q Consensus        22 ~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l   98 (220)
                      .+.+...|+.+.. ..+-.++.+|.+.+...           ...+|||||||+|.+++.+++.+  .+|+++|. +.++
T Consensus       166 ~l~i~~~pgvFs~-~~lD~gt~lLl~~l~~~-----------~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al  233 (342)
T PRK09489        166 GLTVKTLPGVFSR-DGLDVGSQLLLSTLTPH-----------TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAAL  233 (342)
T ss_pred             CEEEEeCCCCCCC-CCCCHHHHHHHHhcccc-----------CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            4677777865543 34556677777776422           23479999999999999999875  47999999 5699


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCC------CChHHHHHHHHHhhCC
Q 027659           99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAE------HLLEPLLQTIFALSGP  172 (220)
Q Consensus        99 ~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~------~~~~~l~~~l~~~l~~  172 (220)
                      +.+++|++.|+.             ..++...|...     ...++||+|+++++|+.      .....+++.+.++|+|
T Consensus       234 ~~A~~nl~~n~l-------------~~~~~~~D~~~-----~~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp  295 (342)
T PRK09489        234 ESSRATLAANGL-------------EGEVFASNVFS-----DIKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNS  295 (342)
T ss_pred             HHHHHHHHHcCC-------------CCEEEEccccc-----ccCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCc
Confidence            999999999875             23444333221     13568999999998432      2357899999999999


Q ss_pred             CcEEEEEEEe
Q 027659          173 KTTILLGYEI  182 (220)
Q Consensus       173 ~g~~~i~~~~  182 (220)
                      ||.++++...
T Consensus       296 gG~L~iVan~  305 (342)
T PRK09489        296 GGELRIVANA  305 (342)
T ss_pred             CCEEEEEEeC
Confidence            9999988754

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=9.9e-14  Score=114.90  Aligned_cols=99  Identities=24%  Similarity=0.359  Sum_probs=78.4

Q ss_pred             cEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      +|||||||+|.+++.+|..+.  +|+++|+ +++++.+++|+..|++            .++.+...||-..     ..+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l------------~~~~~~~~dlf~~-----~~~  175 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL------------VRVLVVQSDLFEP-----LRG  175 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC------------ccEEEEeeecccc-----cCC
Confidence            799999999999999998865  7999999 6799999999999985            2455555577654     245


Q ss_pred             CccEEEEecCCCCCC--------------------------hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          144 PFDYIIGTDVYAEHL--------------------------LEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       144 ~fD~V~~~d~y~~~~--------------------------~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +||+|++|++|-+..                          +..++..+...|+|+|.+++-...
T Consensus       176 ~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~  240 (280)
T COG2890         176 KFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL  240 (280)
T ss_pred             ceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC
Confidence            999999999954332                          335677777789998888876553

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.58  E-value=9.3e-14  Score=108.50  Aligned_cols=118  Identities=19%  Similarity=0.222  Sum_probs=88.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||+|||+|..++.+++.  +++|+++|. +++++.+++|++.++.            .++++...|..+.   ..
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l------------~~i~~~~~d~~~~---~~  109 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGL------------KNVTVVHGRAEEF---GQ  109 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCC------------CCEEEEeccHhhC---CC
Confidence            3789999999999999999864  568999998 6699999999999875            3588888665443   22


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEE
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKL  203 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~  203 (220)
                       .++||+|+++..   ..++.+++.+.++|+|||.+++.......   ..+.+..+ .++.++.
T Consensus       110 -~~~fDlV~~~~~---~~~~~~l~~~~~~LkpGG~lv~~~~~~~~---~~l~~~~~~~~~~~~~  166 (187)
T PRK00107        110 -EEKFDVVTSRAV---ASLSDLVELCLPLLKPGGRFLALKGRDPE---EEIAELPKALGGKVEE  166 (187)
T ss_pred             -CCCccEEEEccc---cCHHHHHHHHHHhcCCCeEEEEEeCCChH---HHHHHHHHhcCceEee
Confidence             568999998754   34688999999999999999987654332   33333332 2665543

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.58  E-value=9.4e-14  Score=113.48  Aligned_cols=144  Identities=15%  Similarity=0.147  Sum_probs=98.8

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      .+..|.+++.....      ....+.+|||||||+|.+++.+++.  +.+|+++|+ +++++.+++|+..|+        
T Consensus        69 ~Te~Lv~~~l~~~~------~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~--------  134 (251)
T TIGR03704        69 RTEFLVDEAAALAR------PRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG--------  134 (251)
T ss_pred             cHHHHHHHHHHhhc------ccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------
Confidence            46667766654321      1113458999999999999999865  458999999 679999999998764        


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC---------------------------ChHHHHHHHHHhh
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH---------------------------LLEPLLQTIFALS  170 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~---------------------------~~~~l~~~l~~~l  170 (220)
                             +++...|+.+.... ...++||+|+++++|.+.                           .+..+++...++|
T Consensus       135 -------~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L  206 (251)
T TIGR03704       135 -------GTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWL  206 (251)
T ss_pred             -------CEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence                   25666666442211 113579999999985321                           0346777778899


Q ss_pred             CCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEeeCCCC
Q 027659          171 GPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAKE  209 (220)
Q Consensus       171 ~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~~~~  209 (220)
                      +|||.+++.+....   .....+.++ .+|....+...++
T Consensus       207 ~~gG~l~l~~~~~~---~~~v~~~l~~~g~~~~~~~~~~~  243 (251)
T TIGR03704       207 APGGHLLVETSERQ---APLAVEAFARAGLIARVASSEEL  243 (251)
T ss_pred             CCCCEEEEEECcch---HHHHHHHHHHCCCCceeeEcccc
Confidence            99999998765432   245555554 4788777765554

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.58  E-value=1.4e-13  Score=118.96  Aligned_cols=146  Identities=20%  Similarity=0.230  Sum_probs=101.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~~  140 (220)
                      +|++|||||||+|..++.++..|+ +|+++|. +.+++.+++|++.|+..          ..++++...|+.+.. ....
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~----------~~~v~~i~~D~~~~l~~~~~  289 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLD----------LSKAEFVRDDVFKLLRTYRD  289 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CCcEEEEEccHHHHHHHHHh
Confidence            678999999999999998887776 6999998 56999999999999861          136788886654321 1111


Q ss_pred             cCCCccEEEEecC-CCCC---------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-----cCCeEEEee
Q 027659          141 VAPPFDYIIGTDV-YAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-----SNFNVKLVP  205 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~---------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-----~~f~v~~v~  205 (220)
                      ..++||+|+++++ |...         .+..++....++|+|||.++.+.....-. .+.|.+.+.     .+-++..+.
T Consensus       290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~-~~~f~~~v~~aa~~~~~~~~~l~  368 (396)
T PRK15128        290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMT-SDLFQKIIADAAIDAGRDVQFIE  368 (396)
T ss_pred             cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCC-HHHHHHHHHHHHHHcCCeEEEEE
Confidence            2458999999998 5443         24556667788899999999866543332 244544432     345666666


Q ss_pred             CCCCCcccC----CCCCCC
Q 027659          206 KAKESTMWG----NPLGLY  220 (220)
Q Consensus       206 ~~~~~~~~~----~~~~~~  220 (220)
                      .....+++.    .+++.|
T Consensus       369 ~~~~~~DhP~~~~~pe~~Y  387 (396)
T PRK15128        369 QFRQAADHPVIATYPEGLY  387 (396)
T ss_pred             EcCCCCCCCCCCCCCCcCC
Confidence            665555554    455555

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.58  E-value=3.9e-14  Score=114.34  Aligned_cols=108  Identities=17%  Similarity=0.220  Sum_probs=80.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+|.+|||+|||||.++..+++. +  .+|+++|+ ++|++.+++++...+.            .+|++.+   ++.+.+
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------------~~i~~v~---~da~~l  110 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------------QNIEFVQ---GDAEDL  110 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------------SEEEEE----BTTB-
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------------CCeeEEE---cCHHHh
Confidence            36789999999999999999875 3  47999999 5699999999987664            4788888   445556


Q ss_pred             cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      +..+++||.|+++-. .+..+....++.+.++|+|||.+.+..-.+..
T Consensus       111 p~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~  158 (233)
T PF01209_consen  111 PFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPR  158 (233)
T ss_dssp             -S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred             cCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence            667889999999888 77778999999999999999998887765554

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=6.1e-14  Score=107.26  Aligned_cols=75  Identities=36%  Similarity=0.554  Sum_probs=65.9

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+.+|+.|+|||||||.+|+.++.+|++ |+++|. +++++.+++|+..+             ..++.+...|..+.   
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l-------------~g~v~f~~~dv~~~---  105 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL-------------LGDVEFVVADVSDF---  105 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh-------------CCceEEEEcchhhc---
Confidence            6779999999999999999999999985 999998 78999999999984             35899999776654   


Q ss_pred             cccCCCccEEEEecCC
Q 027659          139 KAVAPPFDYIIGTDVY  154 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y  154 (220)
                         ..+||.++.|++|
T Consensus       106 ---~~~~dtvimNPPF  118 (198)
T COG2263         106 ---RGKFDTVIMNPPF  118 (198)
T ss_pred             ---CCccceEEECCCC
Confidence               6789999999993

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.56  E-value=8.9e-15  Score=101.01  Aligned_cols=92  Identities=18%  Similarity=0.285  Sum_probs=74.4

Q ss_pred             EEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCcc
Q 027659           69 IELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFD  146 (220)
Q Consensus        69 LELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD  146 (220)
                      ||+|||+|..+..+++. +.+|+++|. +++++.++++....               .+.+...|.   ..++..++.||
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---------------~~~~~~~d~---~~l~~~~~sfD   62 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---------------GVSFRQGDA---EDLPFPDNSFD   62 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---------------TEEEEESBT---TSSSS-TT-EE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---------------CchheeehH---HhCcccccccc
Confidence            89999999999999999 778999999 56888888876543               345666444   44455678999


Q ss_pred             EEEEecC-CCCCChHHHHHHHHHhhCCCcEEEE
Q 027659          147 YIIGTDV-YAEHLLEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       147 ~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i  178 (220)
                      +|+++.+ ++.+....+++.+.++|||||.+++
T Consensus        63 ~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   63 VVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            9999999 6668899999999999999999886

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.56  E-value=7e-14  Score=112.34  Aligned_cols=106  Identities=14%  Similarity=0.198  Sum_probs=90.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      +|.+|||+|||||-.++.+++..  ++|+++|+ +.||+.+++.+..-+.            .++++..   ++.+.+|.
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~------------~~i~fv~---~dAe~LPf  115 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV------------QNVEFVV---GDAENLPF  115 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCc------------cceEEEE---echhhCCC
Confidence            78999999999999999999875  57999999 5699999998876443            2377777   56677788


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ++++||+|.++-. .+..+++..++.+.|+|+|||++++....+.
T Consensus       116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226         116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            8999999999988 8888999999999999999998887765543

>TIGR00452 methyltransferase, putative

Probab=99.55  E-value=7.7e-14  Score=117.02  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=86.5

Q ss_pred             ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecch-hhHHHHHHHHHHhhhhhccC
Q 027659           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQM  115 (220)
Q Consensus        38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~  115 (220)
                      -|.+.......+..-        ...+|++|||+|||+|..+..++..|+ .|+++|.+ .++..++........     
T Consensus       103 e~~s~~~~~~~l~~l--------~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~-----  169 (314)
T TIGR00452       103 EWRSDIKWDRVLPHL--------SPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN-----  169 (314)
T ss_pred             HHHHHHHHHHHHHhc--------CCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-----
Confidence            466555555555432        356789999999999999999998887 49999984 476654332221111     


Q ss_pred             CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       116 ~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                            ..++.+..++..+.   +. ...||+|+++.+ |+..+...+++.++++|+|||.+++..
T Consensus       170 ------~~~v~~~~~~ie~l---p~-~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       170 ------DKRAILEPLGIEQL---HE-LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             ------CCCeEEEECCHHHC---CC-CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence                  23566666544332   22 347999999999 999999999999999999999999864

Known examples to date are restricted to the proteobacteria.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.55  E-value=1.2e-14  Score=104.86  Aligned_cols=105  Identities=22%  Similarity=0.263  Sum_probs=82.9

Q ss_pred             CCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           65 GKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      |.+|||+|||+|...+.+++.+ .+++++|+ +.+++.++.|+..++.           ..++++...|+.+.. .....
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~-----------~~~~~~~~~D~~~~~-~~~~~   68 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGL-----------DDRVEVIVGDARDLP-EPLPD   68 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTT-----------TTTEEEEESHHHHHH-HTCTT
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccC-----------CceEEEEECchhhch-hhccC
Confidence            4689999999999999999998 78999999 6799999999998876           457899887775442 11246


Q ss_pred             CCccEEEEecCCCCC---------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          143 PPFDYIIGTDVYAEH---------LLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       143 ~~fD~V~~~d~y~~~---------~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ++||+|+++++|...         ....+++.+.++|+|||.+++..+
T Consensus        69 ~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   69 GKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             T-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            799999999994421         246789999999999999998764

...

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.55  E-value=1.1e-13  Score=116.88  Aligned_cols=104  Identities=20%  Similarity=0.215  Sum_probs=79.8

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..+|++|||||||+|..+..++..|++ |+++|.+ .++...+........           ..++.+...+..+.   +
T Consensus       120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~-----------~~~i~~~~~d~e~l---p  185 (322)
T PRK15068        120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGN-----------DQRAHLLPLGIEQL---P  185 (322)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCCHHHC---C
Confidence            457899999999999999999998875 9999984 455433322221111           24688887665433   3


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      . .+.||+|++..+ |+..+...+++.+.+.|+|||.+++..
T Consensus       186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            3 578999999999 998999999999999999999998764

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.54  E-value=7.1e-14  Score=116.46  Aligned_cols=100  Identities=22%  Similarity=0.330  Sum_probs=80.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..++.+++.|.+|+++|. +.+++.+++++..+++             ++++...|.....    ..
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-------------~v~~~~~D~~~~~----~~  182 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-------------NIRTGLYDINSAS----IQ  182 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEechhccc----cc
Confidence            4569999999999999999999999999999 5699999999887654             5666665543321    25


Q ss_pred             CCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          143 PPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       143 ~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ++||+|+++.+ ++  .+....+++.+.++|+|||.+++..
T Consensus       183 ~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        183 EEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             CCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            68999999988 54  3467899999999999999976643

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.54  E-value=1.5e-13  Score=107.45  Aligned_cols=116  Identities=19%  Similarity=0.222  Sum_probs=85.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+.+|||+|||+|.+++.+++.+  .+|+++|. +++++.+++|++.++.            .++++...+...     .
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~------------~~i~~~~~d~~~-----~   93 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC------------GNIDIIPGEAPI-----E   93 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CCeEEEecCchh-----h
Confidence            67799999999999999999864  47999999 6799999999988764            356766644311     1


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCe
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN  200 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~  200 (220)
                      ...+||+|+++..  ...+..+++.+.+.|+|||.+++.......  ...+.+.++ .+|+
T Consensus        94 ~~~~~D~v~~~~~--~~~~~~~l~~~~~~Lk~gG~lv~~~~~~~~--~~~~~~~l~~~g~~  150 (187)
T PRK08287         94 LPGKADAIFIGGS--GGNLTAIIDWSLAHLHPGGRLVLTFILLEN--LHSALAHLEKCGVS  150 (187)
T ss_pred             cCcCCCEEEECCC--ccCHHHHHHHHHHhcCCCeEEEEEEecHhh--HHHHHHHHHHCCCC
Confidence            2457999998765  224678899999999999999886543222  345555554 3553

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.54  E-value=9e-14  Score=108.31  Aligned_cols=102  Identities=25%  Similarity=0.301  Sum_probs=79.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..+..++||||||.|..++.||++|.+|+++|. +.+++.+++-++..++             +|+....|..+..    
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l-------------~i~~~~~Dl~~~~----   90 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGL-------------DIRTRVADLNDFD----   90 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT--------------TEEEEE-BGCCBS----
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCc-------------eeEEEEecchhcc----
Confidence            346679999999999999999999999999999 4599998887777765             5788887765542    


Q ss_pred             cCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .++.||+|++.-+   ...+..+.+++.++..++|||.+++..
T Consensus        91 ~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   91 FPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             -TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            3468999999877   345668899999999999999988754

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.53  E-value=3.6e-13  Score=115.93  Aligned_cols=136  Identities=18%  Similarity=0.194  Sum_probs=95.8

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (220)
                      +.+..+.+.+....         .++.+|||||||+|.+++.+++.  +++|+++|+ +++++.+++|++.++.      
T Consensus       236 peTE~LVe~aL~~l---------~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~------  300 (423)
T PRK14966        236 PETEHLVEAVLARL---------PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA------  300 (423)
T ss_pred             ccHHHHHHHhhhcc---------CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------
Confidence            34667777776542         14568999999999999999864  467999999 6799999999987753      


Q ss_pred             CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC--------------------------ChHHHHHHHHHhh
Q 027659          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH--------------------------LLEPLLQTIFALS  170 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~--------------------------~~~~l~~~l~~~l  170 (220)
                             ++++...||.+.. .+ ...+||+|++|++|...                          .+..+++.+.++|
T Consensus       301 -------rV~fi~gDl~e~~-l~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L  371 (423)
T PRK14966        301 -------RVEFAHGSWFDTD-MP-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRL  371 (423)
T ss_pred             -------cEEEEEcchhccc-cc-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhc
Confidence                   6888888875432 11 13579999999985321                          1346777778889


Q ss_pred             CCCcEEEEEEEecCchHHHHHHHHHh-cCCeEE
Q 027659          171 GPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK  202 (220)
Q Consensus       171 ~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~  202 (220)
                      +|||.+++.......   +...+.++ .+|...
T Consensus       372 kpgG~lilEiG~~Q~---e~V~~ll~~~Gf~~v  401 (423)
T PRK14966        372 AEGGFLLLEHGFDQG---AAVRGVLAENGFSGV  401 (423)
T ss_pred             CCCcEEEEEECccHH---HHHHHHHHHCCCcEE
Confidence            999998875544322   34444443 366543

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.53  E-value=4.3e-13  Score=110.28  Aligned_cols=109  Identities=19%  Similarity=0.127  Sum_probs=84.4

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .++.+|||+|||+|..+..+++. +  .+|+++|. ++|++.++++......         ....++++...|..   .+
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---------~~~~~i~~~~~d~~---~l  139 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---------SCYKNIEWIEGDAT---DL  139 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---------ccCCCeEEEEcccc---cC
Confidence            35779999999999999998875 4  47999999 5699999876542111         00246788875543   34


Q ss_pred             cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      +..+++||+|+++.+ .+..+...+++.+.++|+|||.+++..-.+
T Consensus       140 p~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        140 PFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             CCCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            445678999999998 777789999999999999999998876544

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.52  E-value=2.1e-13  Score=111.61  Aligned_cols=105  Identities=18%  Similarity=0.282  Sum_probs=90.4

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ...+|++|||||||.|.+++.+|+. |.+|+++++ ++..+.+++.++.-++           ..++++...||.+.   
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl-----------~~~v~v~l~d~rd~---  134 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL-----------EDNVEVRLQDYRDF---  134 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCC-----------CcccEEEecccccc---
Confidence            5668999999999999999999986 799999999 5599999999988877           46899999999876   


Q ss_pred             cccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          139 KAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                         .++||-|++-++   .....++.+++.+.++|+|||.+++-...
T Consensus       135 ---~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~  178 (283)
T COG2230         135 ---EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT  178 (283)
T ss_pred             ---ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence               345999999999   34566999999999999999998865443

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.52  E-value=7.2e-13  Score=122.51  Aligned_cols=138  Identities=20%  Similarity=0.146  Sum_probs=106.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +|++|||||||+|..++.++..|++ |+++|+ +.+++.+++|++.|+..          ..++++...|..+..  ...
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~----------~~~v~~i~~D~~~~l--~~~  605 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLS----------GRQHRLIQADCLAWL--KEA  605 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC----------ccceEEEEccHHHHH--HHc
Confidence            6789999999999999999998885 999999 56999999999999861          146888887654321  112


Q ss_pred             CCCccEEEEecC-CCCC-----------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEEeeCCC
Q 027659          142 APPFDYIIGTDV-YAEH-----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAK  208 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~-----------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~v~~~~  208 (220)
                      .++||+|++.++ +...           .+..++..+.++|+|||.++++...+.....   .+.+ +.++.+..+....
T Consensus       606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~---~~~~~~~g~~~~~i~~~~  682 (702)
T PRK11783        606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMD---EEGLAKLGLKAEEITAKT  682 (702)
T ss_pred             CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChh---HHHHHhCCCeEEEEecCC
Confidence            468999999998 5321           2466888888899999999988766554322   3334 4589999999988


Q ss_pred             CCcccCCC
Q 027659          209 ESTMWGNP  216 (220)
Q Consensus       209 ~~~~~~~~  216 (220)
                      .+++|...
T Consensus       683 ~~~Dhp~~  690 (702)
T PRK11783        683 LPPDFARN  690 (702)
T ss_pred             CCCCCCCC
Confidence            88888754

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.51  E-value=2.2e-13  Score=112.37  Aligned_cols=116  Identities=17%  Similarity=0.203  Sum_probs=86.2

Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      ....+++.+..       ....|.+|||||||.|.+++.+|+. |++|+++.+ ++..+.+++.++..++          
T Consensus        48 ~~k~~~~~~~~-------~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl----------  110 (273)
T PF02353_consen   48 ERKLDLLCEKL-------GLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGL----------  110 (273)
T ss_dssp             HHHHHHHHTTT-------T--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTS----------
T ss_pred             HHHHHHHHHHh-------CCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCC----------
Confidence            34445555553       4568899999999999999999987 999999998 5688999999988776          


Q ss_pred             CCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       ..++++...||.+.      +.+||.|++-++ .+  ...++.+++.+.++|+|||.+++-...
T Consensus       111 -~~~v~v~~~D~~~~------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~  168 (273)
T PF02353_consen  111 -EDRVEVRLQDYRDL------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT  168 (273)
T ss_dssp             -SSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred             -CCceEEEEeecccc------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence             56789988887654      349999999999 44  367899999999999999999865433

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.51  E-value=4.4e-13  Score=111.48  Aligned_cols=120  Identities=17%  Similarity=0.242  Sum_probs=88.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+.+|||+|||+|..++.+++.  +++|+++|+ +++++.+++|+..|+.           ..++.+...|+.+.  .  
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~-----------~~~i~~~~~D~~~~--~--  185 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIQSDLFAA--L--  185 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhc--c--
Confidence            3468999999999999999986  458999999 6699999999998875           35788888776432  1  


Q ss_pred             cCCCccEEEEecCCCCC--------------------------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHH
Q 027659          141 VAPPFDYIIGTDVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM  194 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~--------------------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~  194 (220)
                      ...+||+|+++++|...                          .+..+++.+.++|+|||.+++-... ..   +.+.+.
T Consensus       186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~-~~---~~v~~~  261 (284)
T TIGR03533       186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGN-SM---EALEEA  261 (284)
T ss_pred             CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc-CH---HHHHHH
Confidence            23579999999884321                          1245677788899999998876543 11   344455


Q ss_pred             Hhc-CCeEE
Q 027659          195 WKS-NFNVK  202 (220)
Q Consensus       195 ~~~-~f~v~  202 (220)
                      +.. +|...
T Consensus       262 ~~~~~~~~~  270 (284)
T TIGR03533       262 YPDVPFTWL  270 (284)
T ss_pred             HHhCCCcee
Confidence            543 55553

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.50  E-value=9.4e-13  Score=107.27  Aligned_cols=140  Identities=19%  Similarity=0.226  Sum_probs=98.4

Q ss_pred             ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhcc
Q 027659           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQ  114 (220)
Q Consensus        38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~  114 (220)
                      .++.+..+.+.+.+..        ...+.+|||+|||+|..++.++..  +.+|+++|. +.+++.+++|+..++.    
T Consensus        69 p~~~~~~l~~~~l~~~--------~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----  136 (251)
T TIGR03534        69 PRPDTEELVEAALERL--------KKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL----  136 (251)
T ss_pred             CCCChHHHHHHHHHhc--------ccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC----
Confidence            3456667777766542        124568999999999999999986  457999998 6699999999988765    


Q ss_pred             CCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCC-CC--------------------------hHHHHHHHH
Q 027659          115 MNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAE-HL--------------------------LEPLLQTIF  167 (220)
Q Consensus       115 ~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~-~~--------------------------~~~l~~~l~  167 (220)
                              .++.+...|+.+..    ..++||+|+++++|.. ..                          +..+++.+.
T Consensus       137 --------~~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~  204 (251)
T TIGR03534       137 --------DNVTFLQSDWFEPL----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAP  204 (251)
T ss_pred             --------CeEEEEECchhccC----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHH
Confidence                    36788887765421    2568999999988332 10                          236778888


Q ss_pred             HhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEe
Q 027659          168 ALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  204 (220)
Q Consensus       168 ~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v  204 (220)
                      ++|+|||.+++.......   +.+.+.++ .+|+...+
T Consensus       205 ~~L~~gG~~~~~~~~~~~---~~~~~~l~~~gf~~v~~  239 (251)
T TIGR03534       205 RLLKPGGWLLLEIGYDQG---EAVRALFEAAGFADVET  239 (251)
T ss_pred             HhcccCCEEEEEECccHH---HHHHHHHHhCCCCceEE
Confidence            899999999987654332   23334443 46754333

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.50  E-value=6.1e-13  Score=106.79  Aligned_cols=125  Identities=17%  Similarity=0.135  Sum_probs=95.1

Q ss_pred             CcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++|||+|||+|..+..+++..  .+|+++|+ +++++.+++++...+.           ..++++...|.....    ..
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl-----------~~~i~~~~~d~~~~~----~~   65 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGL-----------QGRIRIFYRDSAKDP----FP   65 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC----CC
Confidence            479999999999999998763  57999999 6699999999887665           457888887764331    14


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-------------hHHHHHHHHHh-cCCeEEEee
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-------------~~~~~f~~~~~-~~f~v~~v~  205 (220)
                      ++||+|++..+ ++......+++.+.++|+|||.+++.......             .....+.+.++ .+|++....
T Consensus        66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~~Gf~~~~~~  143 (224)
T smart00828       66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEWAELLARNNLRVVEGV  143 (224)
T ss_pred             CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHHHHHHHHCCCeEEEeE
Confidence            58999999999 77778999999999999999999987643210             01245556664 478876543

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.50  E-value=6.7e-13  Score=108.44  Aligned_cols=99  Identities=15%  Similarity=0.123  Sum_probs=79.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+.+|||+|||+|..+..++..+.+|+++|+ +++++.++++..                 .+.+...|+..   .+..+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~-----------------~~~~~~~d~~~---~~~~~  101 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA-----------------ADHYLAGDIES---LPLAT  101 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----------------CCCEEEcCccc---CcCCC
Confidence            4678999999999999999988999999999 668888876632                 12444544433   33345


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ++||+|+++.+ .+......+++.+.++|+|||.++++...
T Consensus       102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            68999999998 77778999999999999999999988644

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.50  E-value=2.8e-13  Score=106.72  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=84.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+.+|||||||+|.+++.++..+ ++|+++|. +++++.+++|++.++.            .++.+...|+.+..  ...
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~------------~~v~~~~~D~~~~l--~~~  118 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA------------GNARVVNTNALSFL--AQP  118 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC------------CcEEEEEchHHHHH--hhc
Confidence            56799999999999999765554 57999998 6799999999999875            36888887664321  112


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHHHh--hCCCcEEEEEEEecC
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIFAL--SGPKTTILLGYEIRS  184 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~--l~~~g~~~i~~~~r~  184 (220)
                      ...||+|+++++|.....+.+++.+...  ++|++.+|+.+..+.
T Consensus       119 ~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~  163 (199)
T PRK10909        119 GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVEN  163 (199)
T ss_pred             CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence            3469999999888888888888888774  789999999877643

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.50  E-value=6.2e-13  Score=110.66  Aligned_cols=103  Identities=17%  Similarity=0.247  Sum_probs=81.1

Q ss_pred             CcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+|||+|||+|.+++.++...  .+|+++|+ +++++.+++|+..++.           ..++.+...||.+..    ..
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~-----------~~~v~~~~~d~~~~~----~~  180 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-----------EHRVEFIQSNLFEPL----AG  180 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhccC----cC
Confidence            689999999999999999864  58999999 6699999999998875           345889988876531    22


Q ss_pred             CCccEEEEecCCCCC--------------------------ChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          143 PPFDYIIGTDVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       143 ~~fD~V~~~d~y~~~--------------------------~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .+||+|+++++|...                          .+..++....++|+|||.+++.....
T Consensus       181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            379999999874321                          24457777888899999988866543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.49  E-value=1.5e-12  Score=114.69  Aligned_cols=144  Identities=13%  Similarity=0.124  Sum_probs=102.9

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      +..|.+.+.+..       ....+.+|||||||+|..++.+|+.+.+|+++|. ++|++.+++|++.|+.          
T Consensus       282 ~e~l~~~vl~~l-------~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~----------  344 (443)
T PRK13168        282 NQKMVARALEWL-------DPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL----------  344 (443)
T ss_pred             HHHHHHHHHHHh-------cCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC----------
Confidence            456666665542       2335679999999999999999998889999999 6699999999998875          


Q ss_pred             CCCceEEEEeeeCCCCC-ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCC
Q 027659          121 LLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF  199 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~-~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f  199 (220)
                        .++++...|+.+... .+.....||+|+++++|..  ....++.+.+ ++|++.+|+++...+-.  +......+.+|
T Consensus       345 --~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dPPr~g--~~~~~~~l~~-~~~~~ivyvSCnp~tla--RDl~~L~~~gY  417 (443)
T PRK13168        345 --DNVTFYHANLEEDFTDQPWALGGFDKVLLDPPRAG--AAEVMQALAK-LGPKRIVYVSCNPATLA--RDAGVLVEAGY  417 (443)
T ss_pred             --CceEEEEeChHHhhhhhhhhcCCCCEEEECcCCcC--hHHHHHHHHh-cCCCeEEEEEeChHHhh--ccHHHHhhCCc
Confidence              468999988754321 1122457999999888543  3455666665 58999999998654432  23223336689


Q ss_pred             eEEEeeCCCC
Q 027659          200 NVKLVPKAKE  209 (220)
Q Consensus       200 ~v~~v~~~~~  209 (220)
                      +++.+.--++
T Consensus       418 ~l~~i~~~Dm  427 (443)
T PRK13168        418 RLKRAGMLDM  427 (443)
T ss_pred             EEEEEEEecc
Confidence            9988754433

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.48  E-value=7.1e-13  Score=106.87  Aligned_cols=103  Identities=15%  Similarity=0.108  Sum_probs=82.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++.+|||+|||+|..+..+++. +  .+|+++|+ +++++.+++++..++.            .++++...|....   +
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~---~  109 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------------HNVELVHGNAMEL---P  109 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------------CceEEEEechhcC---C
Confidence            5789999999999999999865 3  47999999 6799999999876543            4677777655432   2


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ...++||+|+++.+ .+......+++.+.++|+|||.+++...
T Consensus       110 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       110 FDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            34578999999888 6667788999999999999999987653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.48  E-value=5.9e-13  Score=109.58  Aligned_cols=104  Identities=16%  Similarity=0.136  Sum_probs=81.7

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++.+|||||||+|..+..++. .+++|+++|. +++++.++++...              ..++.+...|...   .+
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--------------~~~i~~~~~D~~~---~~  112 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--------------KNKIEFEANDILK---KD  112 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--------------CCceEEEECCccc---CC
Confidence            44678999999999999998886 4679999999 5699988876542              1367887766543   23


Q ss_pred             ccCCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          140 AVAPPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ..+++||+|++.++ ++..  ....+++.+.++|+|||.+++....
T Consensus       113 ~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            34578999999988 5543  6889999999999999999998653

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.47  E-value=9.3e-13  Score=117.05  Aligned_cols=104  Identities=20%  Similarity=0.273  Sum_probs=85.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ++.+|||+|||+|..++.+++. +.+|+++|+ +++++.+++|....             ..++.+...|+...   +.+
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~-------------~~~v~~~~~d~~~~---~~~  329 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGR-------------KCSVEFEVADCTKK---TYP  329 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcC-------------CCceEEEEcCcccC---CCC
Confidence            5779999999999999998864 778999999 56999998876522             24688888776543   223


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .++||+|++..+ ++......+++.+.++|+|||.+++....+
T Consensus       330 ~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        330 DNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             CCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            568999999999 888889999999999999999999986544

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.47  E-value=4.2e-13  Score=101.68  Aligned_cols=99  Identities=23%  Similarity=0.236  Sum_probs=78.2

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++++|||+|||+|..+..+++.|.+|+++|. +.+++.      .                ++.....+-   .....
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~----------------~~~~~~~~~---~~~~~   74 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R----------------NVVFDNFDA---QDPPF   74 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T----------------TSEEEEEEC---HTHHC
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h----------------hhhhhhhhh---hhhhc
Confidence            457889999999999999999999999999998 557666      1                112222111   12223


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      ..++||+|+++.+ ++......+++.+.++|+|||.++++.+.+..
T Consensus        75 ~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~  120 (161)
T PF13489_consen   75 PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNRDD  120 (161)
T ss_dssp             HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred             cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence            4679999999999 88778999999999999999999999998753

...

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.47  E-value=7.9e-13  Score=107.89  Aligned_cols=105  Identities=16%  Similarity=0.236  Sum_probs=82.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh----CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+.+|||||||+|..++.+++.    +.+|+++|. ++|++.+++++..++.           ..++++...|..+.   
T Consensus        56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----------~~~v~~~~~d~~~~---  121 (247)
T PRK15451         56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDI---  121 (247)
T ss_pred             CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEeCChhhC---
Confidence            5679999999999999888762    468999999 6799999999987654           34688887655432   


Q ss_pred             cccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          139 KAVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      +  ...+|+|+++-+ ++.  .....+++.+.+.|+|||.++++...+.
T Consensus       122 ~--~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~  168 (247)
T PRK15451        122 A--IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF  168 (247)
T ss_pred             C--CCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence            1  245999999877 433  2357899999999999999999876543

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.46  E-value=3.2e-12  Score=92.65  Aligned_cols=101  Identities=26%  Similarity=0.316  Sum_probs=77.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||+|||+|..+..+++.  +.+|+++|. +.+++.+++|++.++.            .++.+...+....  ...
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~~~~~~--~~~   84 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV------------SNIVIVEGDAPEA--LED   84 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC------------CceEEEecccccc--Chh
Confidence            5679999999999999999976  357999999 5699999999988764            3566666543321  111


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ..++||+|++...  ......+++.+.++|+|||.+++..
T Consensus        85 ~~~~~D~v~~~~~--~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        85 SLPEPDRVFIGGS--GGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             hcCCCCEEEECCc--chhHHHHHHHHHHHcCCCCEEEEEe
Confidence            2458999998765  2335789999999999999998864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.46  E-value=1.1e-12  Score=108.47  Aligned_cols=103  Identities=21%  Similarity=0.219  Sum_probs=83.4

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-CC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..+.+|||||||+|..++.+++. +.  +|+++|. +++++.+++|...++.            .++.+...|+.+   +
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------------~~v~~~~~d~~~---l  140 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------------TNVEFRLGEIEA---L  140 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------------CCEEEEEcchhh---C
Confidence            46889999999999998877764 54  6999999 6799999999887654            367777765543   3


Q ss_pred             cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      +..++.||+|+++.+ ++......+++.+.++|+|||.+++..
T Consensus       141 ~~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~  183 (272)
T PRK11873        141 PVADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISD  183 (272)
T ss_pred             CCCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            334568999999988 777778899999999999999999864

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.46  E-value=8.5e-13  Score=103.38  Aligned_cols=110  Identities=19%  Similarity=0.194  Sum_probs=79.4

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ...|.+||||+||+|.+|+.++.+|+ +|+++|. +++++.+++|++.|+.           ..++++...|........
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~-----------~~~~~~~~~D~~~~l~~~  115 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKS-----------GEQAEVVRNSALRALKFL  115 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------cccEEEEehhHHHHHHHh
Confidence            35788999999999999999999998 5999998 6699999999999976           346777775553221100


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHH--hhCCCcEEEEEEEe
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFA--LSGPKTTILLGYEI  182 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~--~l~~~g~~~i~~~~  182 (220)
                      .....++.|+..|+ |.......++..+..  +++++|.+++-+..
T Consensus       116 ~~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       116 AKKPTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             hccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            11233444445555 888888888887755  47788877765554

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.46  E-value=1.1e-12  Score=107.65  Aligned_cols=106  Identities=23%  Similarity=0.254  Sum_probs=76.0

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++|++|||||||.|..+..++..|++ |+++|-.. +-.++-.+-..-..         ....+....+-.   +.++
T Consensus       112 ~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~-lf~~QF~~i~~~lg---------~~~~~~~lplgv---E~Lp  178 (315)
T PF08003_consen  112 PDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSP-LFYLQFEAIKHFLG---------QDPPVFELPLGV---EDLP  178 (315)
T ss_pred             CCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCCh-HHHHHHHHHHHHhC---------CCccEEEcCcch---hhcc
Confidence            3679999999999999999999999997 99999522 22233222222210         012233333222   2333


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      . .+.||+|++..| ||..+.-..++.++..|++||.+++-.
T Consensus       179 ~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  179 N-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             c-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEE
Confidence            3 578999999999 999999999999999999999988643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.46  E-value=9.8e-13  Score=104.19  Aligned_cols=124  Identities=15%  Similarity=0.023  Sum_probs=90.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee-CCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw-~~~~~~~  139 (220)
                      .+.+|||||||+|..+..+++..  .+|+++|. +++++.+++++..++.            .++.+...|+ ..... .
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~------------~~v~~~~~d~~~~l~~-~  106 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL------------TNLRLLCGDAVEVLLD-M  106 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC------------CCEEEEecCHHHHHHH-H
Confidence            56789999999999999998763  46999999 6699999999988754            4688888766 32110 0


Q ss_pred             ccCCCccEEEEecC--CCCC-------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEE
Q 027659          140 AVAPPFDYIIGTDV--YAEH-------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVK  202 (220)
Q Consensus       140 ~~~~~fD~V~~~d~--y~~~-------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~  202 (220)
                      ...+.||+|+++.+  +...       ....+++.+.++|+|||.++++...+.  .....++.+++ ++.++
T Consensus       107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~--~~~~~~~~~~~~g~~~~  177 (202)
T PRK00121        107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEG--YAEYMLEVLSAEGGFLV  177 (202)
T ss_pred             cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHH--HHHHHHHHHHhCccccc
Confidence            23568999998755  3221       257899999999999999999775433  34555666643 66554

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.45  E-value=1.5e-12  Score=109.37  Aligned_cols=101  Identities=17%  Similarity=0.263  Sum_probs=79.7

Q ss_pred             CcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+|||+|||+|.+++.++..  +.+|+++|+ +++++.+++|++.++.           ..++.+...|+.+.  .  ..
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l-----------~~~i~~~~~D~~~~--l--~~  199 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGL-----------EDRVTLIESDLFAA--L--PG  199 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCcEEEEECchhhh--C--CC
Confidence            58999999999999999976  458999999 6699999999998875           34688888776432  1  23


Q ss_pred             CCccEEEEecCCCCC--------------------------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          143 PPFDYIIGTDVYAEH--------------------------LLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       143 ~~fD~V~~~d~y~~~--------------------------~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ++||+|+++++|...                          .+..+++.+.++|+|||.+++-..
T Consensus       200 ~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g  264 (307)
T PRK11805        200 RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVG  264 (307)
T ss_pred             CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            579999999874211                          134677888889999999988544

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.45  E-value=4.3e-12  Score=104.91  Aligned_cols=135  Identities=19%  Similarity=0.267  Sum_probs=94.7

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (220)
                      +.+..+.+++....       ...++.+|||+|||+|..++.++...  .+|+++|. +.+++.+++|+. +..      
T Consensus        91 ~~te~l~~~~~~~~-------~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~------  156 (275)
T PRK09328         91 PETEELVEWALEAL-------LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGL------  156 (275)
T ss_pred             CCcHHHHHHHHHhc-------cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCC------
Confidence            44566777666331       23356789999999999999999875  57999999 569999999988 222      


Q ss_pred             CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC---------------------------ChHHHHHHHHHh
Q 027659          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH---------------------------LLEPLLQTIFAL  169 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~---------------------------~~~~l~~~l~~~  169 (220)
                           ..++.+...|+....    ..++||+|+++++|...                           .+..+++.+.++
T Consensus       157 -----~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~  227 (275)
T PRK09328        157 -----GARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRY  227 (275)
T ss_pred             -----CCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHh
Confidence                 357888888774432    14689999999884321                           134567777789


Q ss_pred             hCCCcEEEEEEEecCchHHHHHHHHHh-cCCe
Q 027659          170 SGPKTTILLGYEIRSTSVHEQMLQMWK-SNFN  200 (220)
Q Consensus       170 l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~  200 (220)
                      |+|||.+++.......   +.+.+.++ .+|.
T Consensus       228 Lk~gG~l~~e~g~~~~---~~~~~~l~~~gf~  256 (275)
T PRK09328        228 LKPGGWLLLEIGYDQG---EAVRALLAAAGFA  256 (275)
T ss_pred             cccCCEEEEEECchHH---HHHHHHHHhCCCc
Confidence            9999999986543322   33444443 4664

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.45  E-value=5e-12  Score=99.82  Aligned_cols=125  Identities=19%  Similarity=0.267  Sum_probs=89.4

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ....+.+|||+|||+|.+++.+++. +  .+|+++|. +++++.+++|++.++.           ..++.+...|..+. 
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----------~~~v~~~~~d~~~~-  104 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----------LNNIVLIKGEAPEI-  104 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCCeEEEEechhhh-
Confidence            3457789999999999999999864 3  47999998 6799999999998874           24677777555332 


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEE
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK  202 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~  202 (220)
                       .+.....||.|+++..  ...+..+++.+.++|+|||.+++...  ..+......+.++ .+|.++
T Consensus       105 -l~~~~~~~D~V~~~~~--~~~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~~~~  166 (198)
T PRK00377        105 -LFTINEKFDRIFIGGG--SEKLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGFNLE  166 (198)
T ss_pred             -HhhcCCCCCEEEECCC--cccHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCCCeE
Confidence             1222468999997542  34567889999999999999887433  2223445555554 366443

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.44  E-value=2.5e-12  Score=105.43  Aligned_cols=97  Identities=16%  Similarity=0.149  Sum_probs=76.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .++.+|||||||+|..+..+++.  +.+|+++|. +++++.++++.                 .++.+...|....   .
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----------------~~~~~~~~d~~~~---~   89 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----------------PDCQFVEADIASW---Q   89 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------CCCeEEECchhcc---C
Confidence            35789999999999999999876  468999999 56998887663                 1345555443222   1


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                       ...+||+|+++.+ ++......+++.+.++|+|||.+++..
T Consensus        90 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683         90 -PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             -CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEEC
Confidence             2458999999999 777778899999999999999998865

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.44  E-value=2.2e-12  Score=103.12  Aligned_cols=114  Identities=14%  Similarity=0.126  Sum_probs=82.5

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC---eEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (220)
                      +++.+...+.+..       ...++.+|||+|||+|..+..+++...   +|+++|. +++++.+++|+..++.      
T Consensus        61 ~~p~~~~~~~~~l-------~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------  127 (215)
T TIGR00080        61 SAPHMVAMMTELL-------ELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------  127 (215)
T ss_pred             chHHHHHHHHHHh-------CCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------
Confidence            3455555555442       344778999999999999999998743   4999998 6799999999988765      


Q ss_pred             CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                            .++++...|..+..   ....+||+|+++..     ...+.+.+.+.|+|||++++...
T Consensus       128 ------~~v~~~~~d~~~~~---~~~~~fD~Ii~~~~-----~~~~~~~~~~~L~~gG~lv~~~~  178 (215)
T TIGR00080       128 ------DNVIVIVGDGTQGW---EPLAPYDRIYVTAA-----GPKIPEALIDQLKEGGILVMPVG  178 (215)
T ss_pred             ------CCeEEEECCcccCC---cccCCCCEEEEcCC-----cccccHHHHHhcCcCcEEEEEEc
Confidence                  46788876654321   12458999998765     11223556788999999888653

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.44  E-value=1.9e-12  Score=104.59  Aligned_cols=118  Identities=19%  Similarity=0.229  Sum_probs=90.9

Q ss_pred             HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCC
Q 027659           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL  122 (220)
Q Consensus        44 ~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~  122 (220)
                      ...+|+....       ...++.+|||||||+|..+..+++.+++|+++|. +++++.+++++..++.            
T Consensus        35 ~~~~~l~~~~-------~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~------------   95 (233)
T PRK05134         35 LRLNYIREHA-------GGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL------------   95 (233)
T ss_pred             HHHHHHHHhc-------cCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC------------
Confidence            4446666553       2446889999999999999999998989999998 5688999888776542            


Q ss_pred             CceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       123 ~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                       ++.+...++.....  ...++||+|+++.+ .+......+++.+.++|+|||.++++...+
T Consensus        96 -~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134         96 -KIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             -ceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence             45666555543321  13468999999998 777788999999999999999999886543

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.44  E-value=1.4e-12  Score=106.95  Aligned_cols=95  Identities=20%  Similarity=0.190  Sum_probs=75.9

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..+.+|||||||+|.++..+++.  +.+|+++|. +.+++.++++                   ++++...|..+   ..
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------------------~~~~~~~d~~~---~~   85 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------------------GVDARTGDVRD---WK   85 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------------------CCcEEEcChhh---CC
Confidence            36789999999999999999987  568999999 5688887542                   24555544332   21


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                       ..++||+|+++.+ ++......+++.+.++|+|||.+++..
T Consensus        86 -~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~  126 (255)
T PRK14103         86 -PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV  126 (255)
T ss_pred             -CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence             2468999999999 777788999999999999999998864

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.44  E-value=2.6e-12  Score=114.61  Aligned_cols=104  Identities=24%  Similarity=0.373  Sum_probs=79.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||+|||+|.+++.++..  +++|+++|+ +++++.+++|+..++.           ..++.+...||.+.  .  
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l-----------~~~v~~~~~D~~~~--~--  202 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEV-----------TDRIQIIHSNWFEN--I--  202 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------ccceeeeecchhhh--C--
Confidence            3468999999999999998864  568999999 5699999999988875           34688888776432  1  


Q ss_pred             cCCCccEEEEecCCCCC---------------------------ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          141 VAPPFDYIIGTDVYAEH---------------------------LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~---------------------------~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ..++||+|+++++|...                           .+..+++.+.++|+|||.+++....
T Consensus       203 ~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~  271 (506)
T PRK01544        203 EKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF  271 (506)
T ss_pred             cCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence            24589999999884321                           1234667777889999999886543

>TIGR00740 methyltransferase, putative

Probab=99.42  E-value=1.6e-12  Score=105.46  Aligned_cols=105  Identities=15%  Similarity=0.122  Sum_probs=82.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh----CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+.+|||||||+|..+..+++.    +.+|+++|. ++|++.+++++.....           ..++++...|+.+..  
T Consensus        53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~--  119 (239)
T TIGR00740        53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRHVE--  119 (239)
T ss_pred             CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhhCC--
Confidence            5678999999999999999874    467999999 6799999999876543           346788886665432  


Q ss_pred             cccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          139 KAVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                         ...+|+|+++.+ .+.  .....+++.+.+.|+|||.++++...+.
T Consensus       120 ---~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~  165 (239)
T TIGR00740       120 ---IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF  165 (239)
T ss_pred             ---CCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence               235899999888 332  3467899999999999999999976554

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.42  E-value=8.8e-12  Score=99.39  Aligned_cols=158  Identities=15%  Similarity=0.064  Sum_probs=100.9

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccC---C
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---N  116 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---~  116 (220)
                      -...|.+++...        ....+.+|||+|||.|..++.+|.+|.+|+++|+ +.+++.+..   .++......   .
T Consensus        19 p~~~l~~~~~~l--------~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~---~~~~~~~~~~~~~   87 (213)
T TIGR03840        19 VNPLLVKHWPAL--------GLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFA---ENGLTPTVTQQGE   87 (213)
T ss_pred             CCHHHHHHHHhh--------CCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHH---HcCCCcceecccc
Confidence            466777777642        1125679999999999999999999999999999 558886532   222211000   0


Q ss_pred             CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEEEecC------ch-
Q 027659          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGYEIRS------TS-  186 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~------~~-  186 (220)
                      .......+|++.+.|..+...  ...++||.|+-..+   ...+....+++.+.++|+|||.+++..-...      +. 
T Consensus        88 ~~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp~  165 (213)
T TIGR03840        88 FTRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPPF  165 (213)
T ss_pred             ceeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcCC
Confidence            000013467777766655421  11357999998776   3344567799999999999997544422211      10 


Q ss_pred             --HHHHHHHHHhcCCeEEEeeCCCCCc
Q 027659          187 --VHEQMLQMWKSNFNVKLVPKAKEST  211 (220)
Q Consensus       187 --~~~~f~~~~~~~f~v~~v~~~~~~~  211 (220)
                        ..+.+.+.+...|+++.+......+
T Consensus       166 ~~~~~eL~~~f~~~~~i~~~~~~~~~~  192 (213)
T TIGR03840       166 SVSPAEVEALYGGHYEIELLESRDVLE  192 (213)
T ss_pred             CCCHHHHHHHhcCCceEEEEeeccccc
Confidence              1345556666678888887666553

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.42  E-value=4e-12  Score=107.61  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=89.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+.+|||||||+|..++.+++.  +.+|+++|. +++++.++++...               .++.+...|..+   .+.
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~---------------~~i~~i~gD~e~---lp~  174 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL---------------KECKIIEGDAED---LPF  174 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc---------------cCCeEEeccHHh---CCC
Confidence            4679999999999999988864  357999999 5699988887542               245666654433   333


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch--------------HHHHHHHHHhc-CCeEEEe
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS--------------VHEQMLQMWKS-NFNVKLV  204 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~--------------~~~~f~~~~~~-~f~v~~v  204 (220)
                      ..+.||+|+++.+ .+....+.+++.+.++|+|||.+++........              ..+++.+.+++ +|+..++
T Consensus       175 ~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aGF~~V~i  254 (340)
T PLN02490        175 PTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVKL  254 (340)
T ss_pred             CCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCCCeEEEE
Confidence            4568999999998 666678889999999999999998865432110              12455566654 7876555


Q ss_pred             e
Q 027659          205 P  205 (220)
Q Consensus       205 ~  205 (220)
                      .
T Consensus       255 ~  255 (340)
T PLN02490        255 K  255 (340)
T ss_pred             E
Confidence            3

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.42  E-value=8.7e-12  Score=100.58  Aligned_cols=104  Identities=15%  Similarity=0.129  Sum_probs=84.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++.+|||+|||+|..+..++..+   .+|+++|. +.+++.+++++..++.           ..++.+...|+.+..   
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---  116 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----------SGNVEFVQGDAEALP---  116 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----------ccCeEEEecccccCC---
Confidence            56799999999999999999876   67999999 5699999998876543           346788776665432   


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ...+.||+|+++.+ .+......+++.+.++|+|||.+++...
T Consensus       117 ~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~  159 (239)
T PRK00216        117 FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEF  159 (239)
T ss_pred             CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEe
Confidence            23568999999888 7778899999999999999999887654

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.42  E-value=5.8e-13  Score=103.04  Aligned_cols=120  Identities=21%  Similarity=0.265  Sum_probs=84.5

Q ss_pred             CcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~  144 (220)
                      .++||+|||.|.++..||..+.+++++|. +.+++.+++.+..              ..+|++...+....    .+.++
T Consensus        45 ~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~--------------~~~V~~~~~dvp~~----~P~~~  106 (201)
T PF05401_consen   45 RRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAG--------------LPHVEWIQADVPEF----WPEGR  106 (201)
T ss_dssp             EEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT---------------SSEEEEES-TTT-------SS-
T ss_pred             ceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCC--------------CCCeEEEECcCCCC----CCCCC
Confidence            47999999999999999999888999999 5699999987653              25789988766443    25689


Q ss_pred             ccEEEEecC-CCCCC---hHHHHHHHHHhhCCCcEEEEEEEecCch--------HHHHHHHHHhcCC-eEEEe
Q 027659          145 FDYIIGTDV-YAEHL---LEPLLQTIFALSGPKTTILLGYEIRSTS--------VHEQMLQMWKSNF-NVKLV  204 (220)
Q Consensus       145 fD~V~~~d~-y~~~~---~~~l~~~l~~~l~~~g~~~i~~~~r~~~--------~~~~f~~~~~~~f-~v~~v  204 (220)
                      ||+|+.+.+ |.-..   +..+++.+...|+|||.+++++.. ...        --+...+++.+.+ +|+.+
T Consensus       107 FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r-d~~c~~wgh~~ga~tv~~~~~~~~~~~~~~  178 (201)
T PF05401_consen  107 FDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR-DANCRRWGHAAGAETVLEMLQEHLTEVERV  178 (201)
T ss_dssp             EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE--HHHHHHTT-S--HHHHHHHHHHHSEEEEEE
T ss_pred             eeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec-CCcccccCcccchHHHHHHHHHHhhheeEE
Confidence            999999999 66543   566788888889999999998863 211        1244556665543 45544

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.41  E-value=7.1e-14  Score=97.96  Aligned_cols=94  Identities=16%  Similarity=0.233  Sum_probs=59.2

Q ss_pred             EEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc-cCCC
Q 027659           69 IELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPP  144 (220)
Q Consensus        69 LELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-~~~~  144 (220)
                      ||+|||+|..+..++..  +.+++++|+ +.|++.+++++.....            .+...  ..+........ ..++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~------------~~~~~--~~~~~~~~~~~~~~~~   66 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN------------DNFER--LRFDVLDLFDYDPPES   66 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---------------EEE--EE--SSS---CCC---
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC------------cceeE--EEeecCChhhcccccc
Confidence            79999999999999987  668999999 5699888877776542            12222  22222221111 2259


Q ss_pred             ccEEEEecC-CCCCChHHHHHHHHHhhCCCcEE
Q 027659          145 FDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTI  176 (220)
Q Consensus       145 fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~  176 (220)
                      ||+|+++.+ ++.+....+++.+.++|+|||.+
T Consensus        67 fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   67 FDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             cceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            999999999 77789999999999999999975

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.41  E-value=6.8e-12  Score=99.60  Aligned_cols=113  Identities=19%  Similarity=0.190  Sum_probs=81.2

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      +..+..++.+..       ...++.+|||+|||+|..+..+++.   +.+|+++|. +++++.+++|+..++.       
T Consensus        57 ~p~~~~~~~~~l-------~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~-------  122 (205)
T PRK13944         57 APHMVAMMCELI-------EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY-------  122 (205)
T ss_pred             hHHHHHHHHHhc-------CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-------
Confidence            444455555442       2346779999999999999998875   358999998 6799999999988765       


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                          ..++++...|..+.  . ....+||.|+++.. .+      +.+.+.+.|+|||.+++...
T Consensus       123 ----~~~v~~~~~d~~~~--~-~~~~~fD~Ii~~~~~~~------~~~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        123 ----WGVVEVYHGDGKRG--L-EKHAPFDAIIVTAAAST------IPSALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             ----CCcEEEEECCcccC--C-ccCCCccEEEEccCcch------hhHHHHHhcCcCcEEEEEEc
Confidence                24577777554332  1 12468999998877 32      22467788999999988654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.41  E-value=9.7e-12  Score=107.25  Aligned_cols=125  Identities=11%  Similarity=0.094  Sum_probs=92.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+.+|||||||+|.+++.+|..+.+|+++|. +++++.+++|++.|+.            .++++...|..+...  ...
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~------------~~~~~~~~d~~~~~~--~~~  298 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL------------DNLSFAALDSAKFAT--AQM  298 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHHHH--hcC
Confidence            5678999999999999999988888999998 6799999999999875            378888866643221  112


Q ss_pred             CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEeeCCC
Q 027659          143 PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK  208 (220)
Q Consensus       143 ~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~~~~  208 (220)
                      .+||+|+.+++|. .....+++.+.. ++|++.+|+++...+..  +. +..+ .+|+++.+.--+
T Consensus       299 ~~~D~vi~DPPr~-G~~~~~l~~l~~-~~p~~ivyvsc~p~Tla--RD-l~~L-~gy~l~~~~~~D  358 (374)
T TIGR02085       299 SAPELVLVNPPRR-GIGKELCDYLSQ-MAPKFILYSSCNAQTMA--KD-IAEL-SGYQIERVQLFD  358 (374)
T ss_pred             CCCCEEEECCCCC-CCcHHHHHHHHh-cCCCeEEEEEeCHHHHH--HH-HHHh-cCceEEEEEEec
Confidence            4699999988864 445666666654 68999999988654332  22 2333 688888774433

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK04266 fibrillarin; Provisional

Probab=99.41  E-value=1.5e-11  Score=98.79  Aligned_cols=130  Identities=17%  Similarity=0.123  Sum_probs=84.8

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..+|.+|||+|||+|..++.+++..  .+|+++|. ++|++.+.++++..              .++.+...|..++...
T Consensus        70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--------------~nv~~i~~D~~~~~~~  135 (226)
T PRK04266         70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--------------KNIIPILADARKPERY  135 (226)
T ss_pred             CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--------------CCcEEEECCCCCcchh
Confidence            4467899999999999999999863  47999998 66998887776532              2566666554332111


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-------hHHHHHHHHHh-cCCeEEEeeC
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWK-SNFNVKLVPK  206 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-------~~~~~f~~~~~-~~f~v~~v~~  206 (220)
                      ....++||+|++.-.. +.....++..+.++|+|||.++++.+.|.-       ..++...+.++ .+|++..+..
T Consensus       136 ~~l~~~~D~i~~d~~~-p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~~aGF~~i~~~~  210 (226)
T PRK04266        136 AHVVEKVDVIYQDVAQ-PNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLEEGGFEILEVVD  210 (226)
T ss_pred             hhccccCCEEEECCCC-hhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHHHcCCeEEEEEc
Confidence            1123569999953222 112345688999999999999996443321       11223344454 4898876543

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.41  E-value=3.1e-12  Score=100.67  Aligned_cols=120  Identities=12%  Similarity=0.041  Sum_probs=87.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ...++||||||+|..++.+|+..  ..|+++|. .++++.+++++..+++            .++++...|..+......
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l------------~ni~~i~~d~~~~~~~~~   83 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL------------KNLHVLCGDANELLDKFF   83 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC------------CCEEEEccCHHHHHHhhC
Confidence            45689999999999999999874  46999998 6699999999987765            478888866643211111


Q ss_pred             cCCCccEEEEecC--CCCCC-------hHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc
Q 027659          141 VAPPFDYIIGTDV--YAEHL-------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  197 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~~-------~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~  197 (220)
                      ..+.+|.|+.+-+  +....       .+.+++.+.++|+|||.+++......  ..+.+.+.+..
T Consensus        84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~--~~~~~~~~~~~  147 (194)
T TIGR00091        84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEP--LFEDMLKVLSE  147 (194)
T ss_pred             CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHH--HHHHHHHHHHh
Confidence            2458999998855  43222       26799999999999999998775432  34555566654

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.41  E-value=5e-12  Score=107.33  Aligned_cols=107  Identities=20%  Similarity=0.189  Sum_probs=84.8

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+|.+|||+|||+|...+.++..+++|+++|+ +++++.++.|++.++.            .++.+...|..+   ++..
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~------------~~i~~~~~D~~~---l~~~  245 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGI------------EDFFVKRGDATK---LPLS  245 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCC------------CCCeEEecchhc---CCcc
Confidence            36779999999999999999989999999999 6699999999988775            236666655443   3333


Q ss_pred             CCCccEEEEecCCCCC----------ChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          142 APPFDYIIGTDVYAEH----------LLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~----------~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      .+.||+|+++++|...          .+..+++.+.+.|+|||.+++..+.+.
T Consensus       246 ~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~  298 (329)
T TIGR01177       246 SESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRI  298 (329)
T ss_pred             cCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCC
Confidence            5789999999885421          257888999999999999998887653

This family is found exclusively in the Archaea.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.40  E-value=9.7e-12  Score=106.66  Aligned_cols=142  Identities=20%  Similarity=0.126  Sum_probs=106.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Ccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~  139 (220)
                      .+|++||+|-|=||..|+.+|..|| +||.+|.+ .+++.+++|++.|++.          ..++.+.+.|.-+.- ...
T Consensus       216 ~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~----------~~~~~~i~~Dvf~~l~~~~  285 (393)
T COG1092         216 AAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD----------GDRHRFIVGDVFKWLRKAE  285 (393)
T ss_pred             ccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC----------ccceeeehhhHHHHHHHHH
Confidence            4699999999999999999999999 69999995 5999999999999973          345666664432211 111


Q ss_pred             ccCCCccEEEEecC-CCCC---------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-----hcCCeEEEe
Q 027659          140 AVAPPFDYIIGTDV-YAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-----KSNFNVKLV  204 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~---------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-----~~~f~v~~v  204 (220)
                      ....+||+|+.-|+ |...         .+.+|+..+.++|+|||.++++...+.-. .+.|.+.+     ..+..++.+
T Consensus       286 ~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~~-~~~f~~~i~~a~~~~~~~~~~~  364 (393)
T COG1092         286 RRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHFS-SDLFLEIIARAAAAAGRRAQEI  364 (393)
T ss_pred             hcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCccC-HHHHHHHHHHHHHhcCCcEEEe
Confidence            23459999999999 8643         36778888899999999999988776654 34444433     235677777


Q ss_pred             eCCCCCcccCC
Q 027659          205 PKAKESTMWGN  215 (220)
Q Consensus       205 ~~~~~~~~~~~  215 (220)
                      ......+++..
T Consensus       365 ~~~~~~~D~p~  375 (393)
T COG1092         365 EGEGQPPDHPR  375 (393)
T ss_pred             eccCCCCCccc
Confidence            77777777743

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.40  E-value=1e-12  Score=109.27  Aligned_cols=104  Identities=18%  Similarity=0.216  Sum_probs=84.9

Q ss_pred             CCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      +..++++.|||+|||||.+++.+|+.||+ |+++|.+++.+.+++.+..|++           ...|++......+. .+
T Consensus        56 ~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~-----------~~ii~vi~gkvEdi-~L  123 (346)
T KOG1499|consen   56 KHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGL-----------EDVITVIKGKVEDI-EL  123 (346)
T ss_pred             hhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCc-----------cceEEEeecceEEE-ec
Confidence            46789999999999999999999999986 9999999988999999999987           45677777444333 23


Q ss_pred             cccCCCccEEEEecC-CC---CCChHHHHHHHHHhhCCCcEEE
Q 027659          139 KAVAPPFDYIIGTDV-YA---EHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~---~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                        +.++.|+|++--. |+   ++.+..++-.-.+.|+|||.+|
T Consensus       124 --P~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  124 --PVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             --CccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence              3589999999887 54   5567777777778899998765

>PLN02672 methionine S-methyltransferase

Probab=99.39  E-value=9.3e-12  Score=118.04  Aligned_cols=156  Identities=17%  Similarity=0.165  Sum_probs=101.6

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccC--
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQM--  115 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~--  115 (220)
                      -+..|.+.|....      ...+++++|||||||+|.+++.+++..  ++|+++|+ +++++.+++|+..|++.-...  
T Consensus       101 eTE~lve~L~~~~------~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~  174 (1082)
T PLN02672        101 WSFTFYEGLNRHP------DSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV  174 (1082)
T ss_pred             hHHHHHHHHHhcc------cccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence            3667777764431      123467799999999999999999864  57999999 679999999999986410000  


Q ss_pred             --CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC-C----------------------------------
Q 027659          116 --NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH-L----------------------------------  158 (220)
Q Consensus       116 --~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~-~----------------------------------  158 (220)
                        ........++++...||.+..  .....+||+|++|++|-.. .                                  
T Consensus       175 ~~~~~~~l~~rV~f~~sDl~~~~--~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d  252 (1082)
T PLN02672        175 YDGEGKTLLDRVEFYESDLLGYC--RDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF  252 (1082)
T ss_pred             cccccccccccEEEEECchhhhc--cccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence              000001246899998886542  1112369999999984211 0                                  


Q ss_pred             ----hHHHHHHHHHhhCCCcEEEEEEEecCchHHH-HHHHHHhcCCeEEEeeC
Q 027659          159 ----LEPLLQTIFALSGPKTTILLGYEIRSTSVHE-QMLQMWKSNFNVKLVPK  206 (220)
Q Consensus       159 ----~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~-~f~~~~~~~f~v~~v~~  206 (220)
                          +..++....++|+|||.+++-...+..+... .+++  +.+|+..++-+
T Consensus       253 GL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~--~~gf~~~~~~~  303 (1082)
T PLN02672        253 GLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFE--RRGFRITKLWQ  303 (1082)
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHH--HCCCCeeEEee
Confidence                1456666777899999999877665554333 2333  24676655433

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.39  E-value=7.8e-12  Score=99.75  Aligned_cols=113  Identities=16%  Similarity=0.180  Sum_probs=81.7

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (220)
                      +++.+..++.+..       ...++.+|||+|||+|..+..+++. +  .+|+++|. +++++.+++|++.++.      
T Consensus        60 ~~p~~~~~~~~~l-------~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------  126 (212)
T PRK13942         60 SAIHMVAIMCELL-------DLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------  126 (212)
T ss_pred             CcHHHHHHHHHHc-------CCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------
Confidence            4666666666553       3447889999999999999999876 3  58999998 6799999999987764      


Q ss_pred             CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                            .++++...|-..   ......+||+|++....     ..+...+.+.|+|||.+++..
T Consensus       127 ------~~v~~~~gd~~~---~~~~~~~fD~I~~~~~~-----~~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        127 ------DNVEVIVGDGTL---GYEENAPYDRIYVTAAG-----PDIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             ------CCeEEEECCccc---CCCcCCCcCEEEECCCc-----ccchHHHHHhhCCCcEEEEEE
Confidence                  467777755322   11234689999976441     122345667899999988854

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.38  E-value=8.9e-13  Score=92.80  Aligned_cols=91  Identities=25%  Similarity=0.306  Sum_probs=71.1

Q ss_pred             EEEeCCcccHHHHHHHHhC-----CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           68 VIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        68 vLELGcG~G~~~l~la~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      |||||||+|.....++...     .+++++|+ +++++.++++....+             .++++.+.|+.+   ++..
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------------~~~~~~~~D~~~---l~~~   64 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------------PKVRFVQADARD---LPFS   64 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------------TTSEEEESCTTC---HHHH
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------------CceEEEECCHhH---Cccc
Confidence            7999999999999999774     67999999 669999999887643             267888866644   4445


Q ss_pred             CCCccEEEEe-c-C-C-CCCChHHHHHHHHHhhCCCc
Q 027659          142 APPFDYIIGT-D-V-Y-AEHLLEPLLQTIFALSGPKT  174 (220)
Q Consensus       142 ~~~fD~V~~~-d-~-y-~~~~~~~l~~~l~~~l~~~g  174 (220)
                      .++||+|+++ . . | .++....+++.+.++++|||
T Consensus        65 ~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   65 DGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            6799999994 3 3 3 34568899999999999987

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.37  E-value=2.2e-11  Score=105.22  Aligned_cols=98  Identities=18%  Similarity=0.200  Sum_probs=77.8

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++.+|||||||+|.+++.+++. |.+|+++|. +++++.+++++.  +.             .+++...|+.+.    
T Consensus       165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l-------------~v~~~~~D~~~l----  225 (383)
T PRK11705        165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL-------------PVEIRLQDYRDL----  225 (383)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC-------------eEEEEECchhhc----
Confidence            346789999999999999999875 789999999 669999988763  21             356666555332    


Q ss_pred             ccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                        .++||.|++..+ .+.  ..++.+++.+.++|+|||.+++..
T Consensus       226 --~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        226 --NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             --CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence              468999999988 543  456889999999999999999864

>PRK08317 hypothetical protein; Provisional

Probab=99.37  E-value=1.6e-11  Score=98.77  Aligned_cols=104  Identities=19%  Similarity=0.122  Sum_probs=81.4

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++.+|||+|||+|..+..++...   .+|+++|. +.+++.++++....             ..++.+...|....  
T Consensus        17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------------~~~~~~~~~d~~~~--   81 (241)
T PRK08317         17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------------GPNVEFVRGDADGL--   81 (241)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------------CCceEEEecccccC--
Confidence            4467899999999999999998753   47999998 56888888773221             24677777655432  


Q ss_pred             ccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          138 IKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                       +...+.||+|++..+ .+......+++.+.++|+|||.+++...
T Consensus        82 -~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         82 -PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             -CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence             223578999999999 7777899999999999999999988753

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.36  E-value=2.8e-11  Score=102.11  Aligned_cols=124  Identities=14%  Similarity=0.113  Sum_probs=90.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..++.+|+.+.+|+++|. +++++.+++|++.|+.            .++++...|..+...  ...
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l------------~~v~~~~~D~~~~~~--~~~  238 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL------------TNVQFQALDSTQFAT--AQG  238 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC------------CceEEEEcCHHHHHH--hcC
Confidence            5679999999999999999999989999998 6799999999999875            468888866543211  123


Q ss_pred             CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEeeCC
Q 027659          143 PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA  207 (220)
Q Consensus       143 ~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~~~  207 (220)
                      +.||+|+.++++. .....+++.+.+ ++|++.+|+++...+..  +. ++.+ .+|+++.+.--
T Consensus       239 ~~~D~Vv~dPPr~-G~~~~~~~~l~~-~~~~~ivyvsc~p~t~~--rd-~~~l-~~y~~~~~~~~  297 (315)
T PRK03522        239 EVPDLVLVNPPRR-GIGKELCDYLSQ-MAPRFILYSSCNAQTMA--KD-LAHL-PGYRIERVQLF  297 (315)
T ss_pred             CCCeEEEECCCCC-CccHHHHHHHHH-cCCCeEEEEECCcccch--hH-Hhhc-cCcEEEEEEEe
Confidence            4799999998832 223445555444 57889999988765543  22 2333 58888777433

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.35  E-value=1.2e-11  Score=99.06  Aligned_cols=128  Identities=20%  Similarity=0.221  Sum_probs=94.3

Q ss_pred             cchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        39 W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      |.......+|+.+.....   +....+.+|||+|||+|..+..+++.+.+|+++|. +.+++.+++++..++.       
T Consensus        23 ~~~~~~~~~~i~~~~~~~---~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-------   92 (224)
T TIGR01983        23 HKMNPLRLDYIRDTIRKN---KKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-------   92 (224)
T ss_pred             HHhhHHHHHHHHHHHHhc---ccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-------
Confidence            344455556776654211   11245789999999999999999988889999998 5699999988876643       


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                           .++.+...+..+...  ...++||+|+++.+ ++......+++.+.++|+++|.++++...+
T Consensus        93 -----~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~  152 (224)
T TIGR01983        93 -----LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINR  152 (224)
T ss_pred             -----CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence                 246666654433211  11368999999999 878889999999999999999998876533

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.35  E-value=3.8e-11  Score=105.50  Aligned_cols=128  Identities=13%  Similarity=0.120  Sum_probs=91.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Ccccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~~~  141 (220)
                      .+.+|||+|||+|..++.+|+.+.+|+++|. +++++.+++|+..|+.            .++++...|+.+.. .....
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~------------~nv~~~~~d~~~~l~~~~~~  359 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI------------ANVEFLAGTLETVLPKQPWA  359 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC------------CceEEEeCCHHHHHHHHHhc
Confidence            4578999999999999999998888999998 6799999999999875            47888887664321 11112


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEEeeCCC
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAK  208 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~v~~~~  208 (220)
                      ...||+|+..+++. .....+++.+.+ ++|++.+|+++...   +...=++.+ +.+|+++.+.--+
T Consensus       360 ~~~~D~vi~dPPr~-G~~~~~l~~l~~-l~~~~ivyvsc~p~---tlard~~~l~~~gy~~~~~~~~D  422 (431)
T TIGR00479       360 GQIPDVLLLDPPRK-GCAAEVLRTIIE-LKPERIVYVSCNPA---TLARDLEFLCKEGYGITWVQPVD  422 (431)
T ss_pred             CCCCCEEEECcCCC-CCCHHHHHHHHh-cCCCEEEEEcCCHH---HHHHHHHHHHHCCeeEEEEEEec
Confidence            35799999888732 224566666554 78899999876533   332333334 5578887774433

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.35  E-value=7.1e-12  Score=100.38  Aligned_cols=100  Identities=21%  Similarity=0.299  Sum_probs=77.1

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||+|||+|..+..++..+.+|+++|. +++++.+++++..+..           ..++.+...|+...     
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~~-----  116 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDV-----------AGNVEFEVNDLLSL-----  116 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChhhC-----
Confidence            346789999999999999999998889999999 6699999999876643           24678887665443     


Q ss_pred             cCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEE
Q 027659          141 VAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i  178 (220)
                       .++||+|+++++ ++.  .....+++.+.+++++++.+.+
T Consensus       117 -~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       117 -CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             -CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence             268999999998 443  3466778888887776544443

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.35  E-value=1.9e-11  Score=102.76  Aligned_cols=104  Identities=15%  Similarity=0.173  Sum_probs=83.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhC--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .++.+|||+|||+|..++.+++..  .+++++|.+++++.+++|+...+.           ..++++...|..+..    
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl-----------~~rv~~~~~d~~~~~----  212 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKES----  212 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCc-----------cceEEEEecCccCCC----
Confidence            356799999999999999999875  479999998899999999988776           457888886654321    


Q ss_pred             cCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          141 VAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       ...+|+|+.+.+ ++.  +....+++.+.+.|+|||++++....
T Consensus       213 -~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~  256 (306)
T TIGR02716       213 -YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMV  256 (306)
T ss_pred             -CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence             124799988888 543  33568999999999999999998653

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.34  E-value=3.3e-11  Score=96.09  Aligned_cols=114  Identities=17%  Similarity=0.142  Sum_probs=82.6

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      ++..+..++....       ...++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++|+..++.         
T Consensus        62 ~~p~~~~~l~~~l-------~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~---------  125 (212)
T PRK00312         62 SQPYMVARMTELL-------ELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL---------  125 (212)
T ss_pred             CcHHHHHHHHHhc-------CCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC---------
Confidence            4555555555442       3446789999999999999988888778999998 6799999999987754         


Q ss_pred             CCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       120 ~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                         .++++...|..+.  .+ ..++||+|++...     ...+.+.+.+.|+|||.+++...
T Consensus       126 ---~~v~~~~~d~~~~--~~-~~~~fD~I~~~~~-----~~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        126 ---HNVSVRHGDGWKG--WP-AYAPFDRILVTAA-----APEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             ---CceEEEECCcccC--CC-cCCCcCEEEEccC-----chhhhHHHHHhcCCCcEEEEEEc
Confidence               3577777554321  11 2368999998765     12234566788999999988765

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.34  E-value=5.3e-11  Score=95.27  Aligned_cols=154  Identities=16%  Similarity=0.087  Sum_probs=97.3

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC---
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP---  117 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~---  117 (220)
                      ...|.+|+...        ...++.+|||+|||.|..++.+|.+|.+|+++|+ +.+++.+..   .+++.......   
T Consensus        23 ~~~L~~~~~~~--------~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~   91 (218)
T PRK13255         23 NPLLQKYWPAL--------ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEF   91 (218)
T ss_pred             CHHHHHHHHhh--------CCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHH---HcCCCccccccccc
Confidence            56677777532        1225679999999999999999999999999999 568887532   23221100000   


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch--------
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS--------  186 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~--------  186 (220)
                      ......+|++...|..+....  ....||.|+-..+   ...+....+++.+.++|+|||+.++......+.        
T Consensus        92 ~~~~~~~v~~~~~D~~~l~~~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp~~  169 (218)
T PRK13255         92 EHYQAGEITIYCGDFFALTAA--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPPFS  169 (218)
T ss_pred             cccccCceEEEECcccCCCcc--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCCCC
Confidence            001134677777555443211  2357999998876   344556889999999999999755432211110        


Q ss_pred             -HHHHHHHHHhcCCeEEEeeCCC
Q 027659          187 -VHEQMLQMWKSNFNVKLVPKAK  208 (220)
Q Consensus       187 -~~~~f~~~~~~~f~v~~v~~~~  208 (220)
                       ..+.+.+.+...|+++.+....
T Consensus       170 ~~~~el~~~~~~~~~i~~~~~~~  192 (218)
T PRK13255        170 VSDEEVEALYAGCFEIELLERQD  192 (218)
T ss_pred             CCHHHHHHHhcCCceEEEeeecc
Confidence             1345556666568887776543

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.34  E-value=1.6e-11  Score=99.02  Aligned_cols=100  Identities=16%  Similarity=0.110  Sum_probs=78.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..+.+|||||||+|..+..+++.+.  +|+++|. +++++.++.+..                .++.+...|..+.   +
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----------------~~~~~~~~d~~~~---~   93 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----------------ENVQFICGDAEKL---P   93 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----------------CCCeEEecchhhC---C
Confidence            3457899999999999999998764  5899998 557777765432                2456666555432   2


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ...++||+|+++.+ ++......+++.+.++|+|||.++++..
T Consensus        94 ~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072        94 LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            24578999999999 7777889999999999999999998764

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.34  E-value=1.1e-10  Score=89.66  Aligned_cols=123  Identities=21%  Similarity=0.258  Sum_probs=91.5

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ...+|.+++|+|||||.+++.+|..+.  +|+++|. +++++.+++|++..+.            +++.+...   +...
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------------~n~~vv~g---~Ap~   95 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV------------DNLEVVEG---DAPE   95 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC------------CcEEEEec---cchH
Confidence            345788999999999999999996654  7999998 6799999999999885            68888874   3332


Q ss_pred             -ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCC-eEEEe
Q 027659          138 -IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNF-NVKLV  204 (220)
Q Consensus       138 -~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f-~v~~v  204 (220)
                       ++.. ..||.|+...-   ..++.+++++...|+|||++++-.-.-  +.....++.++ .++ ++.++
T Consensus        96 ~L~~~-~~~daiFIGGg---~~i~~ile~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v  159 (187)
T COG2242          96 ALPDL-PSPDAIFIGGG---GNIEEILEAAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQV  159 (187)
T ss_pred             hhcCC-CCCCEEEECCC---CCHHHHHHHHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEE
Confidence             2222 27999996654   668999999999999999998755432  22334445454 366 55544

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.33  E-value=3.2e-11  Score=91.72  Aligned_cols=145  Identities=21%  Similarity=0.307  Sum_probs=100.7

Q ss_pred             cccc---hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC--eEEEecch-hhHHHHHHHHHHhhh
Q 027659           37 TVWD---ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQI-EVLPLLKRNVEWNTS  110 (220)
Q Consensus        37 ~~W~---~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~~-~~l~~~~~n~~~n~~  110 (220)
                      .+|=   +...+.+||..+....+++   -...+|||||||.|.+-..|++.|.  +.+++||+ .++++|+.-++.++.
T Consensus        40 EvWFg~~ae~riv~wl~d~~~~~rv~---~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~  116 (227)
T KOG1271|consen   40 EVWFGEDAEERIVDWLKDLIVISRVS---KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGF  116 (227)
T ss_pred             ceecCCcHHHHHHHHHHhhhhhhhhc---ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCC
Confidence            4564   4567788988775322211   1223899999999999999998875  49999995 599997776677765


Q ss_pred             hhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCC-----C----CCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVY-----A----EHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y-----~----~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                                 ...|++.++|..++..   ..++||+|+--..|     +    ...+...+..+.++|+|+|+++|...
T Consensus       117 -----------~n~I~f~q~DI~~~~~---~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSC  182 (227)
T KOG1271|consen  117 -----------SNEIRFQQLDITDPDF---LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSC  182 (227)
T ss_pred             -----------CcceeEEEeeccCCcc---cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEec
Confidence                       3459999999987632   34566666533321     1    12235567888999999999999888


Q ss_pred             ecCchHHHHHHHHHhc-CCeE
Q 027659          182 IRSTSVHEQMLQMWKS-NFNV  201 (220)
Q Consensus       182 ~r~~~~~~~f~~~~~~-~f~v  201 (220)
                      +...   .++.+.++. +|++
T Consensus       183 N~T~---dELv~~f~~~~f~~  200 (227)
T KOG1271|consen  183 NFTK---DELVEEFENFNFEY  200 (227)
T ss_pred             CccH---HHHHHHHhcCCeEE
Confidence            7654   455666654 5765

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.33  E-value=1.3e-11  Score=101.92  Aligned_cols=141  Identities=21%  Similarity=0.180  Sum_probs=90.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +|++||+|-|=||..|+.++..|| +|+.+|.+ .+++.+++|++.|+..          ..++++...|.-+.-..-..
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~----------~~~~~~~~~Dvf~~l~~~~~  192 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLD----------LDRHRFIQGDVFKFLKRLKK  192 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-C----------CTCEEEEES-HHHHHHHHHH
T ss_pred             CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHHHHHHhc
Confidence            689999999999999999999998 59999995 5999999999999872          35788887665332111012


Q ss_pred             CCCccEEEEecC-CCCC------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEeeCCCCCccc
Q 027659          142 APPFDYIIGTDV-YAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPKAKESTMW  213 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v~~~~~~~~~  213 (220)
                      .++||+||.-|+ |...      .+..|+..+.++++|||.++++.....-. .+.|++.+.+ .-+++.+.+...+++|
T Consensus       193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~-~~~l~~~~~~~a~~~~~~~~~~~p~df  271 (286)
T PF10672_consen  193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHIS-PDFLLEAVAEAAREVEFIERLGQPPDF  271 (286)
T ss_dssp             TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS--HHHHHHHHHHHHHHCEEEEEEE-----
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccC-HHHHHHHHHHhCccceEeeeecccccc
Confidence            468999999999 7544      35678888888999999998877765543 3455555532 3344444444444444


Q ss_pred             CC
Q 027659          214 GN  215 (220)
Q Consensus       214 ~~  215 (220)
                      ..
T Consensus       272 ~~  273 (286)
T PF10672_consen  272 PD  273 (286)
T ss_dssp             --
T ss_pred             cc
Confidence            43

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK05785 hypothetical protein; Provisional

Probab=99.32  E-value=1.6e-11  Score=98.93  Aligned_cols=87  Identities=16%  Similarity=0.201  Sum_probs=69.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+.+|||||||||..+..+++. +.+|+++|. ++|++.++.+.                    .....   +.+.++..
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~--------------------~~~~~---d~~~lp~~  107 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD--------------------DKVVG---SFEALPFR  107 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc--------------------ceEEe---chhhCCCC
Confidence            3679999999999999999987 678999999 56999876431                    11232   22334555


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCC
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPK  173 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~  173 (220)
                      +++||+|+++.+ .+..+.+.+++.+.++|+|.
T Consensus       108 d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~  140 (226)
T PRK05785        108 DKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ  140 (226)
T ss_pred             CCCEEEEEecChhhccCCHHHHHHHHHHHhcCc
Confidence            789999999999 77888999999999999994

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.32  E-value=7e-11  Score=94.36  Aligned_cols=119  Identities=14%  Similarity=0.119  Sum_probs=89.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-C-------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-G-------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW  132 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g-------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw  132 (220)
                      ...+.++||++||||-+++.+.+. .       .+|++.|+ ++||...++....-.+.         ....+.+++   
T Consensus        98 p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---------~~~~~~w~~---  165 (296)
T KOG1540|consen   98 PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---------ASSRVEWVE---  165 (296)
T ss_pred             CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---------cCCceEEEe---
Confidence            346789999999999999988864 1       56999999 78999998887665441         123467776   


Q ss_pred             CCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-hHHHHHH
Q 027659          133 GNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQML  192 (220)
Q Consensus       133 ~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-~~~~~f~  192 (220)
                      ++.+.++.++..||....+-- -+..++++.+++..++|||||++++-.-.... +....|.
T Consensus       166 ~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy  227 (296)
T KOG1540|consen  166 GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFY  227 (296)
T ss_pred             CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHH
Confidence            566667778899998877666 66677999999999999999998865544433 3344443

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.31  E-value=4e-11  Score=100.77  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=72.2

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++.+|||||||+|.+++.+++.|.+|+++|+ ++|++.+++|+.......       ....++.+...|+..      .
T Consensus       143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~-------~~~~~~~f~~~Dl~~------l  209 (315)
T PLN02585        143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAAL-------PPEVLPKFEANDLES------L  209 (315)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhccccc-------ccccceEEEEcchhh------c
Confidence            46789999999999999999999999999999 569999999887542100       001356777765532      2


Q ss_pred             CCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEE
Q 027659          142 APPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .++||+|++.++ ++..  ....+++.+.++ .+++ ++++.
T Consensus       210 ~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~l-~~g~-liIs~  249 (315)
T PLN02585        210 SGKYDTVTCLDVLIHYPQDKADGMIAHLASL-AEKR-LIISF  249 (315)
T ss_pred             CCCcCEEEEcCEEEecCHHHHHHHHHHHHhh-cCCE-EEEEe
Confidence            468999999999 5433  244566666643 4444 45554

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.31  E-value=1.4e-10  Score=91.35  Aligned_cols=127  Identities=18%  Similarity=0.223  Sum_probs=86.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||+|||+|..++.+++.  +.+|+++|. +++++.+++|++.++.            .++++...|..+.  ...
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~------------~~v~~~~~d~~~~--~~~  105 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV------------KNVEVIEGSAPEC--LAQ  105 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CCeEEEECchHHH--Hhh
Confidence            6779999999999999999865  468999998 6799999999988764            3577776554221  111


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchH-HHHHHHHHh-cCCeEEEeeCC
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSV-HEQMLQMWK-SNFNVKLVPKA  207 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~-~~~f~~~~~-~~f~v~~v~~~  207 (220)
                      ....+|.|+...   ...+..+++.+.++|+|||.+++......... ....++..+ .++++.++.-.
T Consensus       106 ~~~~~d~v~~~~---~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (196)
T PRK07402        106 LAPAPDRVCIEG---GRPIKEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQLQARNIEVVQAAVN  171 (196)
T ss_pred             CCCCCCEEEEEC---CcCHHHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhcCCCCceEEEEEhh
Confidence            223467665432   23468899999999999999988876533211 122233332 36677666443

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.29  E-value=1.2e-10  Score=93.79  Aligned_cols=137  Identities=16%  Similarity=0.195  Sum_probs=93.4

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C-CeEEEecch-hhHHHHHHHHHHhhhhhccCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPG  118 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~  118 (220)
                      +.-+.+++.+..+.    ...+++..+||+|||+|..++.++.. + ..|+++|.+ .++.++.+|+..+.+        
T Consensus       130 TEE~V~~Vid~~~~----~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l--------  197 (328)
T KOG2904|consen  130 TEEWVEAVIDALNN----SEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL--------  197 (328)
T ss_pred             HHHHHHHHHHHHhh----hhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh--------
Confidence            44455555543321    13345668999999999999998853 3 459999995 599999999999988        


Q ss_pred             CCCCCceEEEE----eeeCCCCCccccCCCccEEEEecCCC-CCC--------------------------hHHHHHHHH
Q 027659          119 SDLLGSIQAVE----LDWGNEDHIKAVAPPFDYIIGTDVYA-EHL--------------------------LEPLLQTIF  167 (220)
Q Consensus       119 ~~~~~~v~~~~----ldw~~~~~~~~~~~~fD~V~~~d~y~-~~~--------------------------~~~l~~~l~  167 (220)
                         .+.+.+..    .||.+...  ...+++|++++|++|- .++                          +..+..-..
T Consensus       198 ---~g~i~v~~~~me~d~~~~~~--l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~  272 (328)
T KOG2904|consen  198 ---SGRIEVIHNIMESDASDEHP--LLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLAT  272 (328)
T ss_pred             ---cCceEEEecccccccccccc--cccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhH
Confidence               46777764    45555443  2468999999999842 111                          223555567


Q ss_pred             HhhCCCcEEEEEEEec--CchHHHHHHHHH
Q 027659          168 ALSGPKTTILLGYEIR--STSVHEQMLQMW  195 (220)
Q Consensus       168 ~~l~~~g~~~i~~~~r--~~~~~~~f~~~~  195 (220)
                      +.|+|||.+.+....|  ++.....++...
T Consensus       273 R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~  302 (328)
T KOG2904|consen  273 RMLQPGGFEQLELVERKEHSYLVRIWMISL  302 (328)
T ss_pred             hhcccCCeEEEEecccccCcHHHHHHHHhc
Confidence            7789999999988744  443444554433

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.29  E-value=4.7e-12  Score=98.61  Aligned_cols=110  Identities=25%  Similarity=0.312  Sum_probs=80.8

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Ccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~  139 (220)
                      .+|.++|||-||+|.+|+.++.+||+ |+++|. ++++..+++|++.-+.           ..++.+...|....- ...
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~-----------~~~~~v~~~d~~~~l~~~~  109 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL-----------EDKIRVIKGDAFKFLLKLA  109 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT------------GGGEEEEESSHHHHHHHHH
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC-----------CcceeeeccCHHHHHHhhc
Confidence            58999999999999999999999985 999998 6799999999998765           235666664432221 111


Q ss_pred             ccCCCccEEEEecCCCCCC-hHHHHHHHH--HhhCCCcEEEEEEEec
Q 027659          140 AVAPPFDYIIGTDVYAEHL-LEPLLQTIF--ALSGPKTTILLGYEIR  183 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~-~~~l~~~l~--~~l~~~g~~~i~~~~r  183 (220)
                      ....+||+|++.|+|.... +..++..+.  .+|+++|.+++-+..+
T Consensus       110 ~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  110 KKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             HCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             ccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            2367999999988888777 488888887  5789999998877665

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.28  E-value=5.5e-11  Score=95.65  Aligned_cols=95  Identities=20%  Similarity=0.278  Sum_probs=71.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++....+.           ..++.+...|+..      .
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~-----------~~~i~~~~~d~~~------~  124 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGL-----------AGNITFEVGDLES------L  124 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------ccCcEEEEcCchh------c
Confidence            46779999999999999999999989999999 5699999998876543           2467787766322      2


Q ss_pred             CCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCc
Q 027659          142 APPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKT  174 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g  174 (220)
                      .+.||+|+++.+ ++  ......+++.+.+++++++
T Consensus       125 ~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~  160 (230)
T PRK07580        125 LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSL  160 (230)
T ss_pred             cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeE
Confidence            468999999998 44  3345566677766654333

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.27  E-value=2.8e-10  Score=97.76  Aligned_cols=141  Identities=13%  Similarity=0.100  Sum_probs=95.5

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      .+..|.+++.+..       . ..+.++|||+||+|.+|+.+++...+|+++|. +++++.+++|+..|+.         
T Consensus       191 ~~e~l~~~v~~~~-------~-~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~---------  253 (362)
T PRK05031        191 VNEKMLEWALDAT-------K-GSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI---------  253 (362)
T ss_pred             HHHHHHHHHHHHh-------h-cCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC---------
Confidence            4566666666542       1 12357999999999999999987778999998 6799999999999976         


Q ss_pred             CCCCceEEEEeeeCCCCC-ccc------------cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659          120 DLLGSIQAVELDWGNEDH-IKA------------VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  186 (220)
Q Consensus       120 ~~~~~v~~~~ldw~~~~~-~~~------------~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~  186 (220)
                         .++++...|..+... ...            ...+||+|+..+++. ...+.+++.+.+   +++.+|+++...+- 
T Consensus       254 ---~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~-G~~~~~l~~l~~---~~~ivyvSC~p~tl-  325 (362)
T PRK05031        254 ---DNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRA-GLDDETLKLVQA---YERILYISCNPETL-  325 (362)
T ss_pred             ---CcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCCC-CCcHHHHHHHHc---cCCEEEEEeCHHHH-
Confidence               378888866644211 100            012589999987752 345666666654   78899998876332 


Q ss_pred             HHHHHHHHHhcCCeEEEeeCCC
Q 027659          187 VHEQMLQMWKSNFNVKLVPKAK  208 (220)
Q Consensus       187 ~~~~f~~~~~~~f~v~~v~~~~  208 (220)
                       -+.+ ..+.++|+++.+.--+
T Consensus       326 -arDl-~~L~~gY~l~~v~~~D  345 (362)
T PRK05031        326 -CENL-ETLSQTHKVERFALFD  345 (362)
T ss_pred             -HHHH-HHHcCCcEEEEEEEcc
Confidence             1222 3333489888774443

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.27  E-value=1e-10  Score=93.09  Aligned_cols=118  Identities=15%  Similarity=0.127  Sum_probs=82.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhC---CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc-
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~-  138 (220)
                      .++.+|||||||+|..+..+++..   .+|+++|+.++          +.            ..++.+...|+.+.... 
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----------~~------------~~~v~~i~~D~~~~~~~~  107 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----------DP------------IVGVDFLQGDFRDELVLK  107 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----------cC------------CCCcEEEecCCCChHHHH
Confidence            367799999999999999998763   37999998552          11            13578888877664311 


Q ss_pred             ----cccCCCccEEEEecC-CCCCC-----------hHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEE
Q 027659          139 ----KAVAPPFDYIIGTDV-YAEHL-----------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK  202 (220)
Q Consensus       139 ----~~~~~~fD~V~~~d~-y~~~~-----------~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~  202 (220)
                          ....+.||+|+++.. +....           ...+++.+.++|+|||.+++..... . .+..|+..++..|.-.
T Consensus       108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~-~-~~~~~l~~l~~~f~~v  185 (209)
T PRK11188        108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG-E-GFDEYLREIRSLFTKV  185 (209)
T ss_pred             HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC-c-CHHHHHHHHHhCceEE
Confidence                123568999999775 33221           2467888999999999999865432 2 3567778888777554


Q ss_pred             Ee
Q 027659          203 LV  204 (220)
Q Consensus       203 ~v  204 (220)
                      ++
T Consensus       186 ~~  187 (209)
T PRK11188        186 KV  187 (209)
T ss_pred             EE
Confidence            44

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.26  E-value=2.9e-10  Score=99.81  Aligned_cols=105  Identities=21%  Similarity=0.220  Sum_probs=77.9

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .+|.+|||+|||+|..++.++..+  .+|+++|. +++++.+++|++.++.             ++.+...|..+.... 
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-------------~~~~~~~D~~~~~~~-  308 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-------------KATVIVGDARDPAQW-  308 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-------------CeEEEEcCcccchhh-
Confidence            367899999999999999999864  47999998 6699999999998765             356666554332111 


Q ss_pred             ccCCCccEEEEecC-CCCC----------------------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEH----------------------LLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~----------------------~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ...++||.|++.++ ....                      ....++....++|+|||.++++..
T Consensus       309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            12457999998776 3210                      123678888899999999888764

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.24  E-value=2.6e-10  Score=90.98  Aligned_cols=101  Identities=18%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC---eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++.+|||+|||+|..+..+++.+.   +++++|. +.+++.++++..   .           ..++.+...|..+.   +
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~-----------~~~i~~~~~d~~~~---~  101 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L-----------PLNIEFIQADAEAL---P  101 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c-----------CCCceEEecchhcC---C
Confidence            678999999999999999987654   7999999 568888887765   1           23567777555432   2


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ...++||+|+++.. .+......+++.+.++|+|||.+++...
T Consensus       102 ~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  144 (223)
T TIGR01934       102 FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEF  144 (223)
T ss_pred             CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEe
Confidence            23468999999888 7777889999999999999999998764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.24  E-value=4.7e-10  Score=98.67  Aligned_cols=109  Identities=21%  Similarity=0.174  Sum_probs=79.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+|.+|||+|||+|..++.++.. +  .+|+++|. +++++.+++|++.++.            .++.+...|.......
T Consensus       251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------------~~v~~~~~D~~~~~~~  318 (434)
T PRK14901        251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------------KSIKILAADSRNLLEL  318 (434)
T ss_pred             CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CeEEEEeCChhhcccc
Confidence            36789999999999999999875 2  47999998 6699999999998875            3577777654433211


Q ss_pred             -cccCCCccEEEEecC-CC-------CC---------------ChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          139 -KAVAPPFDYIIGTDV-YA-------EH---------------LLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       139 -~~~~~~fD~V~~~d~-y~-------~~---------------~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                       ....+.||.|++..+ ..       ++               ....++..+.++|+|||.++.+...-
T Consensus       319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi  387 (434)
T PRK14901        319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL  387 (434)
T ss_pred             cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence             012468999997544 21       11               03567888888999999887765443

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.1e-10  Score=91.51  Aligned_cols=120  Identities=20%  Similarity=0.212  Sum_probs=85.8

Q ss_pred             cccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhc
Q 027659           35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS  113 (220)
Q Consensus        35 g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~  113 (220)
                      +.-.|=+.+.+...+.+.+       ...++.+|||+|||+|..+-.+|+...+|+.+|. ++..+.+++|++..+.   
T Consensus        50 ~~gqtis~P~~vA~m~~~L-------~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~---  119 (209)
T COG2518          50 GCGQTISAPHMVARMLQLL-------ELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY---  119 (209)
T ss_pred             CCCceecCcHHHHHHHHHh-------CCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC---
Confidence            3444555665555554442       4557899999999999999999999889999997 7799999999998875   


Q ss_pred             cCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       114 ~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                               .||.+...|   ...-.....+||.|+.... .+..+    +.+.+-|++||++++-..
T Consensus       120 ---------~nV~v~~gD---G~~G~~~~aPyD~I~Vtaa-a~~vP----~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         120 ---------ENVTVRHGD---GSKGWPEEAPYDRIIVTAA-APEVP----EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             ---------CceEEEECC---cccCCCCCCCcCEEEEeec-cCCCC----HHHHHhcccCCEEEEEEc
Confidence                     467777744   3322223578999987654 12223    444556889999887554

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.24  E-value=2.9e-10  Score=100.26  Aligned_cols=106  Identities=18%  Similarity=0.127  Sum_probs=79.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++.+|||+|||+|..++.+++.   ..+|+++|. +++++.+++|++.++.            .++.+...|+.+...  
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~~~--  315 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------------TNIETKALDARKVHE--  315 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CeEEEEeCCcccccc--
Confidence            5679999999999999999875   357999999 6699999999998875            357888766654321  


Q ss_pred             ccCCCccEEEEecC-CCCCC----------------------hHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          140 AVAPPFDYIIGTDV-YAEHL----------------------LEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~----------------------~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ...+.||+|++.++ +....                      ...+++...++|+|||.++++...-
T Consensus       316 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~  382 (444)
T PRK14902        316 KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTI  382 (444)
T ss_pred             hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCC
Confidence            11368999998766 32211                      1357888888999999988765443

>PRK06922 hypothetical protein; Provisional

Probab=99.23  E-value=5.9e-11  Score=106.86  Aligned_cols=105  Identities=19%  Similarity=0.213  Sum_probs=77.9

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .++.+|||+|||+|..+..+++.  +.+|+++|+ +.|++.++++...++             .++.+...|..+... .
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g-------------~~ie~I~gDa~dLp~-~  482 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG-------------RSWNVIKGDAINLSS-S  482 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC-------------CCeEEEEcchHhCcc-c
Confidence            46789999999999999888864  458999999 559999988865443             255666644433211 1


Q ss_pred             ccCCCccEEEEecC-CC-------------CCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YA-------------EHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~-------------~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ..+++||+|+++.+ ++             ......+++.+.++|+|||.+++...
T Consensus       483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~  538 (677)
T PRK06922        483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG  538 (677)
T ss_pred             cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence            23568999999876 32             23467889999999999999999864

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.23  E-value=5e-10  Score=95.91  Aligned_cols=159  Identities=11%  Similarity=0.058  Sum_probs=100.7

Q ss_pred             CeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhH
Q 027659           20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVL   98 (220)
Q Consensus        20 ~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l   98 (220)
                      |..+.+.+.++++.-.  --.....|.+++.+..       . ..+.+|||||||+|.+|+.+++...+|+++|. ++++
T Consensus       163 ~~~~~~~~~~~~F~Q~--N~~~~~~l~~~v~~~~-------~-~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av  232 (353)
T TIGR02143       163 GREFIYRQVENSFTQP--NAAVNIKMLEWACEVT-------Q-GSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSV  232 (353)
T ss_pred             CeEEEEEECCCCcccC--CHHHHHHHHHHHHHHh-------h-cCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHH
Confidence            3335566666443311  1123455555555432       1 12347999999999999999988778999998 6799


Q ss_pred             HHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc-c---c---------CCCccEEEEecCCCCCChHHHHHH
Q 027659           99 PLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-A---V---------APPFDYIIGTDVYAEHLLEPLLQT  165 (220)
Q Consensus        99 ~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~-~---~---------~~~fD~V~~~d~y~~~~~~~l~~~  165 (220)
                      +.+++|++.|+.            .++++...|..+..... .   .         ...||+|+..++. ....+.+++.
T Consensus       233 ~~a~~n~~~~~~------------~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR-~G~~~~~l~~  299 (353)
T TIGR02143       233 NAAQYNIAANNI------------DNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR-AGLDPDTCKL  299 (353)
T ss_pred             HHHHHHHHHcCC------------CcEEEEEcCHHHHHHHHhhccccccccccccccCCCCEEEECCCC-CCCcHHHHHH
Confidence            999999999976            36888876664321100 0   0         1248999998882 2334556565


Q ss_pred             HHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEeeCC
Q 027659          166 IFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA  207 (220)
Q Consensus       166 l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~~~  207 (220)
                      +.   +|++.+|+++...+-..  . +..+.++|+++.+.--
T Consensus       300 l~---~~~~ivYvsC~p~tlaR--D-l~~L~~~Y~l~~v~~~  335 (353)
T TIGR02143       300 VQ---AYERILYISCNPETLKA--N-LEQLSETHRVERFALF  335 (353)
T ss_pred             HH---cCCcEEEEEcCHHHHHH--H-HHHHhcCcEEEEEEEc
Confidence            54   37899999887654332  2 2233345888777433

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=2.3e-11  Score=89.14  Aligned_cols=79  Identities=23%  Similarity=0.373  Sum_probs=66.6

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++|++++|||||+|.+++..+..+++ |++.|+ +++++.+++|++...+             ++.+.+.+..+.+..
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-------------qidlLqcdildle~~  111 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-------------QIDLLQCDILDLELK  111 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-------------hhheeeeeccchhcc
Confidence            6789999999999999999988888886 999999 7899999999998765             567777777665432


Q ss_pred             cccCCCccEEEEecCCC
Q 027659          139 KAVAPPFDYIIGTDVYA  155 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~  155 (220)
                         .+.||.++.+++|.
T Consensus       112 ---~g~fDtaviNppFG  125 (185)
T KOG3420|consen  112 ---GGIFDTAVINPPFG  125 (185)
T ss_pred             ---CCeEeeEEecCCCC
Confidence               47899999999854

>PLN03075 nicotianamine synthase; Provisional

Probab=99.22  E-value=2e-10  Score=95.17  Aligned_cols=103  Identities=11%  Similarity=0.020  Sum_probs=80.7

Q ss_pred             CCCcEEEeCCcc-cHHHHHHHH-h--CCeEEEecc-hhhHHHHHHHHHH-hhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           64 KGKRVIELGAGC-GVAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        64 ~~~~vLELGcG~-G~~~l~la~-~--g~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+++|+|+|||. |+.++.++. .  +.+++++|. +++++.++++++. .++           ..+++|...|..+.. 
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----------~~rV~F~~~Da~~~~-  190 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----------SKRMFFHTADVMDVT-  190 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----------cCCcEEEECchhhcc-
Confidence            678999999996 566666663 3  447999999 6799999999864 444           467999997765531 


Q ss_pred             ccccCCCccEEEEecC-CC-CCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          138 IKAVAPPFDYIIGTDV-YA-EHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~-y~-~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                        .....||+|++.-+ |+ ......+++.+.+.|+|||.+++..
T Consensus       191 --~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        191 --ESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             --cccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence              12468999999955 66 4789999999999999999999865

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.22  E-value=1.1e-10  Score=103.82  Aligned_cols=101  Identities=21%  Similarity=0.169  Sum_probs=77.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+++|||||||+|..+..+++.+.+|+++|. +++++.++.   .+..           ..++.+...|.... ..+.+.
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~-----------~~~i~~~~~d~~~~-~~~~~~  101 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGH-----------YKNVKFMCADVTSP-DLNISD  101 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---Hhcc-----------CCceEEEEeccccc-ccCCCC
Confidence            5679999999999999999998889999998 567765432   2322           24678888776432 123345


Q ss_pred             CCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEE
Q 027659          143 PPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ++||+|+++.+ ++...  ...+++.+.++|+|||.+++.
T Consensus       102 ~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        102 GSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             CCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            78999999998 54333  678999999999999999885

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.22  E-value=1.3e-10  Score=80.35  Aligned_cols=99  Identities=22%  Similarity=0.266  Sum_probs=77.0

Q ss_pred             cEEEeCCcccHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659           67 RVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~  144 (220)
                      +++|+|||+|..+..++. .+.+++++|. ++++..++++...+.            ..++.+...++.+...  ....+
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~   66 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALL------------ADNVEVLKGDAEELPP--EADES   66 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccc------------ccceEEEEcChhhhcc--ccCCc
Confidence            589999999999999987 4567999998 557787775433332            2467777766655432  13568


Q ss_pred             ccEEEEecC-CC-CCChHHHHHHHHHhhCCCcEEEEE
Q 027659          145 FDYIIGTDV-YA-EHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       145 fD~V~~~d~-y~-~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ||+|+++.+ +. ......+++.+.+.++++|.+++.
T Consensus        67 ~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          67 FDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             eEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999999 66 778899999999999999999876

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.21  E-value=1.2e-10  Score=94.27  Aligned_cols=103  Identities=15%  Similarity=0.101  Sum_probs=78.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~  138 (220)
                      +.++|||+|||+|..++.++..   +.+|+++|. +++++.+++|++.++.           ..++++...|..+... +
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----------~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----------DHKINFIQSDALSALDQL  136 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEccHHHHHHHH
Confidence            6789999999999988888754   357999998 6799999999999987           4578888866644311 1


Q ss_pred             c--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          139 K--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       139 ~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      .  ...++||+|+....  ...+..++..+.++++|||.+++-
T Consensus       137 ~~~~~~~~fD~VfiDa~--k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        137 LNNDPKPEFDFAFVDAD--KPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             HhCCCCCCCCEEEECCC--HHHHHHHHHHHHHhcCCCeEEEEE
Confidence            0  11468999996533  344567888888999999988764

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.21  E-value=6.7e-11  Score=97.80  Aligned_cols=104  Identities=23%  Similarity=0.340  Sum_probs=84.0

Q ss_pred             CCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           60 PSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..++.++.|||+|||+|++++.+|+.|++ |++++.++|.+.++.-++.|.+           ..+|.++.....+.+  
T Consensus       173 ~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~-----------~~rItVI~GKiEdie--  239 (517)
T KOG1500|consen  173 HSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNL-----------ADRITVIPGKIEDIE--  239 (517)
T ss_pred             ccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCc-----------cceEEEccCcccccc--
Confidence            36789999999999999999999999986 9999999999999999999876           578888884443332  


Q ss_pred             cccCCCccEEEEecC-C---CCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          139 KAVAPPFDYIIGTDV-Y---AEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y---~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                        .+++.|+||+-+. |   ++..++..+-. ++.|+|.|..+=.
T Consensus       240 --LPEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMfPT  281 (517)
T KOG1500|consen  240 --LPEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMFPT  281 (517)
T ss_pred             --CchhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCcccCc
Confidence              4689999999988 4   45555555544 4789999887743

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.21  E-value=3e-10  Score=90.07  Aligned_cols=94  Identities=17%  Similarity=0.151  Sum_probs=66.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||+|||+|..+..+++.  +.+|+++|+ +++++.++++..                 ++.+...+..+    +.
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~-----------------~~~~~~~d~~~----~~  101 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP-----------------NINIIQGSLFD----PF  101 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC-----------------CCcEEEeeccC----CC
Confidence            5678999999999999999876  568999999 569999887632                 23455544333    23


Q ss_pred             cCCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ..++||+|+++.+ ++..  ....+++.+.+++  ++.++++.
T Consensus       102 ~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       102 KDNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             CCCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEE
Confidence            4678999999999 6543  3455666666655  34555543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PTZ00146 fibrillarin; Provisional

Probab=99.20  E-value=1.6e-09  Score=89.44  Aligned_cols=151  Identities=13%  Similarity=0.075  Sum_probs=93.3

Q ss_pred             cccccchH-HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhh
Q 027659           35 GTTVWDAS-VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNT  109 (220)
Q Consensus        35 g~~~W~~s-~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~  109 (220)
                      -.++|+-- .-|+.-|..-...    -...++.+|||||||+|..+..+|.. +  .+|+++|+ +++++.+...+..  
T Consensus       106 eyR~w~p~rSKlaa~i~~g~~~----l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~--  179 (293)
T PTZ00146        106 EYRVWNPFRSKLAAAIIGGVAN----IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK--  179 (293)
T ss_pred             eeeeeCCcccHHHHHHHCCcce----eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh--
Confidence            47889752 2445445433211    12347789999999999999999976 3  36999998 4465444433221  


Q ss_pred             hhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchH--
Q 027659          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSV--  187 (220)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~--  187 (220)
                                  ..+|.+...|...........+.||+|++.-. .++....++..+.++|+|+|.++|..+.+..+.  
T Consensus       180 ------------r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva-~pdq~~il~~na~r~LKpGG~~vI~ika~~id~g~  246 (293)
T PTZ00146        180 ------------RPNIVPIIEDARYPQKYRMLVPMVDVIFADVA-QPDQARIVALNAQYFLKNGGHFIISIKANCIDSTA  246 (293)
T ss_pred             ------------cCCCEEEECCccChhhhhcccCCCCEEEEeCC-CcchHHHHHHHHHHhccCCCEEEEEEeccccccCC
Confidence                        13566666554433222223457999987654 344455677788999999999999776555332  


Q ss_pred             --HHHH---HHHHhc-CCeEEEe
Q 027659          188 --HEQM---LQMWKS-NFNVKLV  204 (220)
Q Consensus       188 --~~~f---~~~~~~-~f~v~~v  204 (220)
                        .+.|   .+.+++ +|++.++
T Consensus       247 ~pe~~f~~ev~~L~~~GF~~~e~  269 (293)
T PTZ00146        247 KPEVVFASEVQKLKKEGLKPKEQ  269 (293)
T ss_pred             CHHHHHHHHHHHHHHcCCceEEE
Confidence              2222   244544 6876443

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.19  E-value=4.3e-10  Score=98.69  Aligned_cols=109  Identities=17%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+|.+|||+|||+|..++.++..   +.+|+++|. +++++.+++|++..+.            .++++...|+..... 
T Consensus       236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------------~~v~~~~~Da~~l~~-  302 (431)
T PRK14903        236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------------SSIEIKIADAERLTE-  302 (431)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CeEEEEECchhhhhh-
Confidence            36789999999999999988875   457999999 5699999999998765            357777766654321 


Q ss_pred             cccCCCccEEEEecC-CCCC----------------------ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          139 KAVAPPFDYIIGTDV-YAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~----------------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                       ...++||.|++..+ ....                      ....++....++|+|||.++++...-..
T Consensus       303 -~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~  371 (431)
T PRK14903        303 -YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTK  371 (431)
T ss_pred             -hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCh
Confidence             12467999998655 2211                      1245677888889999998888765554

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.19  E-value=7e-11  Score=97.30  Aligned_cols=117  Identities=16%  Similarity=0.190  Sum_probs=78.1

Q ss_pred             CCCcEEEeCCcccH----HHHHHHHh-------CCeEEEecc-hhhHHHHHHHHHHh----hhhh---ccC---CC----
Q 027659           64 KGKRVIELGAGCGV----AGFGMALL-------GCNVITTDQ-IEVLPLLKRNVEWN----TSRI---SQM---NP----  117 (220)
Q Consensus        64 ~~~~vLELGcG~G~----~~l~la~~-------g~~v~~~D~-~~~l~~~~~n~~~n----~~~~---~~~---~~----  117 (220)
                      ++.+|+|+|||||-    +++.++..       +.+|++||+ ++||+.+++++-..    ....   .+.   ..    
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45699999999996    55556553       247999999 56999998864211    0000   000   00    


Q ss_pred             -CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CCC-CChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          118 -GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YAE-HLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       118 -~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~~-~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                       ......+|.+...|..+..   ...++||+|+|..+  |.. +....+++.+.++|+|||.+++.....
T Consensus       179 v~~~ir~~V~F~~~dl~~~~---~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~  245 (264)
T smart00138      179 VKPELKERVRFAKHNLLAES---PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES  245 (264)
T ss_pred             EChHHhCcCEEeeccCCCCC---CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence             0001246778776655432   23578999999988  554 456789999999999999999976543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.19  E-value=7.7e-10  Score=91.17  Aligned_cols=107  Identities=17%  Similarity=0.174  Sum_probs=79.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .|.+|||+|||+|..++.+|.+   ...|+++|. +.+++.+++|++.++.            .++.+...|....   +
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------------~~v~~~~~D~~~~---~  135 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------------LNVAVTNFDGRVF---G  135 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEecCCHHHh---h
Confidence            6789999999999999998875   247999998 6699999999998875            3577777554332   1


Q ss_pred             ccCCCccEEEEecC-CCCC----------------------ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          140 AVAPPFDYIIGTDV-YAEH----------------------LLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~----------------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      ...+.||.|+...+ ....                      ....+++...++|+|||.++.+......
T Consensus       136 ~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~  204 (264)
T TIGR00446       136 AAVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEP  204 (264)
T ss_pred             hhccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh
Confidence            12346999998766 4221                      1235788888889999998877655544

>PHA03412 putative methyltransferase; Provisional

Probab=99.19  E-value=1.5e-10  Score=92.57  Aligned_cols=91  Identities=18%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-----CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+.+|||+|||+|.+++.+++.     ..+|+++|+ +.+++.+++|+.                 ++.+...|....  
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~-----------------~~~~~~~D~~~~--  109 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP-----------------EATWINADALTT--  109 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc-----------------CCEEEEcchhcc--
Confidence            3679999999999999999864     347999999 569999997743                 245555444322  


Q ss_pred             ccccCCCccEEEEecCCCCC-------------ChHHHHHHHHHhhCCCcE
Q 027659          138 IKAVAPPFDYIIGTDVYAEH-------------LLEPLLQTIFALSGPKTT  175 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~-------------~~~~l~~~l~~~l~~~g~  175 (220)
                       . ...+||+||+|++|...             .+..++....+++++|+.
T Consensus       110 -~-~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        110 -E-FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             -c-ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence             1 24589999999994411             144577777776666665

>PHA03411 putative methyltransferase; Provisional

Probab=99.19  E-value=3.8e-10  Score=92.27  Aligned_cols=98  Identities=18%  Similarity=0.151  Sum_probs=71.2

Q ss_pred             CCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +.+|||+|||+|.+++.++..  +.+|+++|+ +++++.+++|..                 ++.+...|..+.   . .
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~-----------------~v~~v~~D~~e~---~-~  123 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP-----------------EAEWITSDVFEF---E-S  123 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc-----------------CCEEEECchhhh---c-c
Confidence            458999999999999988875  468999999 669998887631                 345555443322   1 2


Q ss_pred             CCCccEEEEecC-CCCC---------C-----------hHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          142 APPFDYIIGTDV-YAEH---------L-----------LEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~---------~-----------~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ..+||+|+++++ ++..         .           +.+++.....+|+|+|.+++++..+
T Consensus       124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~  186 (279)
T PHA03411        124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGR  186 (279)
T ss_pred             cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecc
Confidence            468999999999 4411         0           3566677778899999998887543

>PRK04457 spermidine synthase; Provisional

Probab=99.18  E-value=1.8e-10  Score=94.73  Aligned_cols=122  Identities=12%  Similarity=0.174  Sum_probs=87.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++++|||||||+|.++..+++.  +.+|+++|+ +++++.++++...+..           ..++++...|..+.  +..
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~-----------~~rv~v~~~Da~~~--l~~  132 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPEN-----------GERFEVIEADGAEY--IAV  132 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCC-----------CCceEEEECCHHHH--HHh
Confidence            4578999999999999988865  457999999 7799999988765432           35788877554322  112


Q ss_pred             cCCCccEEEEecCCCCC------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCe
Q 027659          141 VAPPFDYIIGTDVYAEH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN  200 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~  200 (220)
                      ..++||+|+.. .|...      ....+++.+.++|+|||++++-...+.. ....+++.++..|.
T Consensus       133 ~~~~yD~I~~D-~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~~-~~~~~l~~l~~~F~  196 (262)
T PRK04457        133 HRHSTDVILVD-GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSRDK-RYDRYLERLESSFE  196 (262)
T ss_pred             CCCCCCEEEEe-CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCCch-hHHHHHHHHHHhcC
Confidence            24689999974 32211      2378999999999999999886544443 34666777777774

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.17  E-value=6.6e-10  Score=85.50  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..+.+|||||||+|.++..+++.+.+|+++|. +.+++.+++|+..+              .++++...|..+..   ..
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~--------------~~v~ii~~D~~~~~---~~   74 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA--------------DNLTVIHGDALKFD---LP   74 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC--------------CCEEEEECchhcCC---cc
Confidence            35679999999999999999998889999999 56999998887531              36777776654432   22


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHHHh--hCCCcEEEE
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIFAL--SGPKTTILL  178 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~--l~~~g~~~i  178 (220)
                      ...||.|+++.+|+..  .+++..+...  +.++|.+++
T Consensus        75 ~~~~d~vi~n~Py~~~--~~~i~~~l~~~~~~~~~~l~~  111 (169)
T smart00650       75 KLQPYKVVGNLPYNIS--TPILFKLLEEPPAFRDAVLMV  111 (169)
T ss_pred             ccCCCEEEECCCcccH--HHHHHHHHhcCCCcceEEEEE
Confidence            3469999998777643  2333333322  234555544

>PRK06202 hypothetical protein; Provisional

Probab=99.17  E-value=2.8e-10  Score=91.91  Aligned_cols=101  Identities=19%  Similarity=0.206  Sum_probs=70.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh----C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~----g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ++.+|||||||+|.++..+++.    |  .+|+++|. +++++.++++...+               ++.+...+-..  
T Consensus        60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---------------~~~~~~~~~~~--  122 (232)
T PRK06202         60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---------------GVTFRQAVSDE--  122 (232)
T ss_pred             CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---------------CCeEEEEeccc--
Confidence            5678999999999999888753    3  48999999 67999988775433               23444333222  


Q ss_pred             CccccCCCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          137 HIKAVAPPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                       ++..+++||+|+++.+ ++-..  ...+++.+.++++  |.+++..-.|.
T Consensus       123 -l~~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~  170 (232)
T PRK06202        123 -LVAEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS  170 (232)
T ss_pred             -ccccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence             2223578999999999 55443  4578888888887  55555554444

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.17  E-value=2.6e-10  Score=87.98  Aligned_cols=109  Identities=24%  Similarity=0.368  Sum_probs=81.7

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .+.|.++|||-+|+|.+|+.++.+|+. |+++|. .+++..+++|++.-+.           ..++.+...|-...  +.
T Consensus        41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~-----------~~~~~~~~~da~~~--L~  107 (187)
T COG0742          41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGL-----------EGEARVLRNDALRA--LK  107 (187)
T ss_pred             ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-----------ccceEEEeecHHHH--HH
Confidence            478999999999999999999999985 999998 5699999999887664           34566666444311  11


Q ss_pred             ccC--CCccEEEEecCCCCCChHHHHHHHH----HhhCCCcEEEEEEEec
Q 027659          140 AVA--PPFDYIIGTDVYAEHLLEPLLQTIF----ALSGPKTTILLGYEIR  183 (220)
Q Consensus       140 ~~~--~~fD~V~~~d~y~~~~~~~l~~~l~----~~l~~~g~~~i~~~~r  183 (220)
                      ...  +.||+|+.-|+|.....+.....+.    .+|+|++.+++-+...
T Consensus       108 ~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         108 QLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             hcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            122  2599999988888777755444444    4589999999866544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.16  E-value=2.9e-11  Score=95.06  Aligned_cols=130  Identities=18%  Similarity=0.226  Sum_probs=87.9

Q ss_pred             CCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      =+++||||||||+.|..+-.+..+.+++|+++ |++.+.+.---..+-+.         .-+.     +...    ..++
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~A---------ea~~-----Fl~~----~~~e  187 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVA---------EAVL-----FLED----LTQE  187 (287)
T ss_pred             cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHH---------HHHH-----Hhhh----ccCC
Confidence            36899999999999999998888999999966 88877654222211100         0011     1111    1367


Q ss_pred             CccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-------------hHHHHHHHHHh-cCCeEEEeeCCC
Q 027659          144 PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVKLVPKAK  208 (220)
Q Consensus       144 ~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-------------~~~~~f~~~~~-~~f~v~~v~~~~  208 (220)
                      +||+|.+.|| -....++.++-....+|+|||.+.++...-..             .........++ .+|++..+.+..
T Consensus       188 r~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~RyAH~~~YVr~~l~~~Gl~~i~~~~tt  267 (287)
T COG4976         188 RFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQRYAHSESYVRALLAASGLEVIAIEDTT  267 (287)
T ss_pred             cccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchhhhhccchHHHHHHHHhcCceEEEeeccc
Confidence            8999999999 44456899999999999999999988643221             11223334454 489888777665


Q ss_pred             CCcc
Q 027659          209 ESTM  212 (220)
Q Consensus       209 ~~~~  212 (220)
                      .+.+
T Consensus       268 iR~d  271 (287)
T COG4976         268 IRRD  271 (287)
T ss_pred             chhh
Confidence            5433

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=5.7e-10  Score=84.86  Aligned_cols=146  Identities=18%  Similarity=0.263  Sum_probs=100.5

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      +.+|.+-|.+....-    .....+-++|||||+|.++-.+++. +  +-+.+||+ |++++..++.++.|..       
T Consensus        25 TFlLlDaLekd~~eL----~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-------   93 (209)
T KOG3191|consen   25 TFLLLDALEKDAAEL----KGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-------   93 (209)
T ss_pred             hhHHHHHHHHHHHHH----hhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-------
Confidence            667777776543100    0112457999999999999999975 3  34889999 7899999999998865       


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC----------------------hHHHHHHHHHhhCCCcE
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL----------------------LEPLLQTIFALSGPKTT  175 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~----------------------~~~l~~~l~~~l~~~g~  175 (220)
                            ++..+.-|....  +  ..++.|+++-|++|-+..                      .+.|+..+..+|+|.|.
T Consensus        94 ------~~~~V~tdl~~~--l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv  163 (209)
T KOG3191|consen   94 ------HIDVVRTDLLSG--L--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGV  163 (209)
T ss_pred             ------ccceeehhHHhh--h--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCce
Confidence                  455655443322  1  247899999998854321                      45677777888999999


Q ss_pred             EEEEEEecCchHHHHHHHHHh-cCCeEEEeeCCCCC
Q 027659          176 ILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAKES  210 (220)
Q Consensus       176 ~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~~~~~  210 (220)
                      +|+..-.++..  ++..+.++ ++|.+...-+++..
T Consensus       164 ~Ylv~~~~N~p--~ei~k~l~~~g~~~~~~~~Rk~~  197 (209)
T KOG3191|consen  164 FYLVALRANKP--KEILKILEKKGYGVRIAMQRKAG  197 (209)
T ss_pred             EEeeehhhcCH--HHHHHHHhhcccceeEEEEEecC
Confidence            99988777663  55556554 47877666554443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.15  E-value=1.4e-09  Score=87.03  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=103.1

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecch-hhHHHHHHHHHHhhhh--hccCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSR--ISQMNP  117 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~--~~~~~~  117 (220)
                      ....|.+|+.+.        ...++.+||..|||.|.-.+.+|.+|.+|+++|++ .+++.+.+   .|+..  +.+...
T Consensus        28 pnp~L~~~~~~l--------~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~---e~~~~~~~~~~~~   96 (226)
T PRK13256         28 PNEFLVKHFSKL--------NINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFS---QNTINYEVIHGND   96 (226)
T ss_pred             CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHH---HcCCCcceecccc
Confidence            467787887653        12256799999999999999999999999999995 58887644   12111  000000


Q ss_pred             -CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-----h--
Q 027659          118 -GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGYEIRST-----S--  186 (220)
Q Consensus       118 -~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-----~--  186 (220)
                       ......++++.+.|+-+........++||+|+=..+   ..++.....++.+.++|+|||.+++..-.-..     .  
T Consensus        97 ~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~~~~~GPPf~  176 (226)
T PRK13256         97 YKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHDKKSQTPPYS  176 (226)
T ss_pred             cceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecCCCCCCCCCc
Confidence             001235788888776554321123468999876555   66777889999999999999987655432111     0  


Q ss_pred             -HHHHHHHHHhcCCeEEEeeCC
Q 027659          187 -VHEQMLQMWKSNFNVKLVPKA  207 (220)
Q Consensus       187 -~~~~f~~~~~~~f~v~~v~~~  207 (220)
                       ..+...+.+...|+++.+...
T Consensus       177 v~~~e~~~lf~~~~~i~~l~~~  198 (226)
T PRK13256        177 VTQAELIKNFSAKIKFELIDSK  198 (226)
T ss_pred             CCHHHHHHhccCCceEEEeeec
Confidence             135556667788888887654

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.15  E-value=6.9e-10  Score=93.57  Aligned_cols=99  Identities=22%  Similarity=0.196  Sum_probs=71.9

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++.+|||+|||+|..++.+++..   ..|+++|. +++++.+++|++.++.            .++.+...|....  
T Consensus        78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------------~nV~~i~gD~~~~--  143 (322)
T PRK13943         78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------------ENVIFVCGDGYYG--  143 (322)
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCChhhc--
Confidence            3467899999999999999999764   25999998 6799999999988764            4677776543221  


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                       ......||+|+++..     ...+...+.+.|+|||.+++..
T Consensus       144 -~~~~~~fD~Ii~~~g-----~~~ip~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        144 -VPEFAPYDVIFVTVG-----VDEVPETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             -ccccCCccEEEECCc-----hHHhHHHHHHhcCCCCEEEEEe
Confidence             112357999997644     1223345667899999988754

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.15  E-value=3.9e-10  Score=96.65  Aligned_cols=106  Identities=15%  Similarity=0.082  Sum_probs=82.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+..+||||||+|...+.+|+..  ..++|+|+ ++++..+.+++..+++            .++.+...|...... ..
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL------------~NV~~i~~DA~~ll~-~~  188 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL------------KNLLIINYDARLLLE-LL  188 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHhhh-hC
Confidence            45689999999999999999874  46999998 6799999999988775            478888866543211 12


Q ss_pred             cCCCccEEEEecC--CCCCC-----hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          141 VAPPFDYIIGTDV--YAEHL-----LEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~~-----~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      .++.+|.|+.+-+  +....     .+.+++.+.++|+|||.+.+....
T Consensus       189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~  237 (390)
T PRK14121        189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS  237 (390)
T ss_pred             CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence            4678999998766  33222     268999999999999999997654

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.13  E-value=2e-09  Score=84.18  Aligned_cols=120  Identities=17%  Similarity=0.142  Sum_probs=78.2

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhC---CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ...+|.+|||+|||+|.++..++...   .+|+++|.+++.          .            ..++.+...|..+...
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----------~------------~~~i~~~~~d~~~~~~   86 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----------P------------IENVDFIRGDFTDEEV   86 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----------c------------CCCceEEEeeCCChhH
Confidence            34578899999999999999888653   369999985522          1            1246777767654321


Q ss_pred             c-----cccCCCccEEEEecC-C----C-CC------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCe
Q 027659          138 I-----KAVAPPFDYIIGTDV-Y----A-EH------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFN  200 (220)
Q Consensus       138 ~-----~~~~~~fD~V~~~d~-y----~-~~------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~  200 (220)
                      .     ....++||+|+++.. +    + ..      ....++..+.++|+|||.+++......  ....++..+++.|.
T Consensus        87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~--~~~~~l~~l~~~~~  164 (188)
T TIGR00438        87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGE--EIDEYLNELRKLFE  164 (188)
T ss_pred             HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCc--cHHHHHHHHHhhhc
Confidence            1     013457999998643 2    1 11      136788889999999999998543322  23466666666664


Q ss_pred             EEEe
Q 027659          201 VKLV  204 (220)
Q Consensus       201 v~~v  204 (220)
                      -..+
T Consensus       165 ~~~~  168 (188)
T TIGR00438       165 KVKV  168 (188)
T ss_pred             eEEE
Confidence            4333

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.13  E-value=3.7e-10  Score=87.60  Aligned_cols=104  Identities=14%  Similarity=0.110  Sum_probs=80.2

Q ss_pred             cEEEeCCcccHHHHHHH-HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceE-EEEeeeCCCCCcc-ccC
Q 027659           67 RVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ-AVELDWGNEDHIK-AVA  142 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~-~~~ldw~~~~~~~-~~~  142 (220)
                      .|||+|||||..=-..- ..+.+||++|- +.|-+.+.+.++.|..            .++. ++..   ..++++ ..+
T Consensus        79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~------------~~~~~fvva---~ge~l~~l~d  143 (252)
T KOG4300|consen   79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP------------LQVERFVVA---DGENLPQLAD  143 (252)
T ss_pred             ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC------------cceEEEEee---chhcCccccc
Confidence            58999999996433332 34678999998 5599999998888743            4555 4543   333343 257


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      .++|+|++.-+ -...+....++.+.++|+|||++++..+.+..
T Consensus       144 ~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~  187 (252)
T KOG4300|consen  144 GSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGE  187 (252)
T ss_pred             CCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence            89999999999 77888999999999999999999998887765

>TIGR03438 probable methyltransferase

Probab=99.13  E-value=4.8e-10  Score=94.09  Aligned_cols=110  Identities=14%  Similarity=0.110  Sum_probs=74.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .+.+|||||||+|..+..+++.   +.+|+++|+ ++||+.+++++.....           ..++...+.|..+.....
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----------~~~v~~i~gD~~~~~~~~  131 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----------QLEVHGICADFTQPLALP  131 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----------CceEEEEEEcccchhhhh
Confidence            5678999999999999998876   568999999 5699999988765421           235666666655432221


Q ss_pred             ccC-CCccEEEE-ecC-C--CCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          140 AVA-PPFDYIIG-TDV-Y--AEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       140 ~~~-~~fD~V~~-~d~-y--~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ... ....+++. ..+ +  .......+++.+.+.|+|||.+++......
T Consensus       132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d~~~  181 (301)
T TIGR03438       132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLVK  181 (301)
T ss_pred             cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence            111 11233333 333 3  344567889999999999999998765443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.12  E-value=2.4e-09  Score=94.55  Aligned_cols=122  Identities=18%  Similarity=0.104  Sum_probs=86.5

Q ss_pred             cccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhh
Q 027659           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRI  112 (220)
Q Consensus        37 ~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (220)
                      .+++.+..++..+.          ...+|.+|||+|||+|..++.++..   +.+|+++|. +++++.+++|++.++.  
T Consensus       233 ~vqd~~s~l~~~~l----------~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--  300 (445)
T PRK14904        233 SVQNPTQALACLLL----------NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI--  300 (445)
T ss_pred             EEeCHHHHHHHHhc----------CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC--
Confidence            46655555554443          2346789999999999999888864   357999999 6699999999998765  


Q ss_pred             ccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC-------CC---------------ChHHHHHHHHHh
Q 027659          113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA-------EH---------------LLEPLLQTIFAL  169 (220)
Q Consensus       113 ~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~-------~~---------------~~~~l~~~l~~~  169 (220)
                                .++.+...|.....    ....||.|+...+ -.       ++               ....++..+.++
T Consensus       301 ----------~~v~~~~~Da~~~~----~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~  366 (445)
T PRK14904        301 ----------TIIETIEGDARSFS----PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL  366 (445)
T ss_pred             ----------CeEEEEeCcccccc----cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence                      36778776654432    2457999996433 11       00               123578888899


Q ss_pred             hCCCcEEEEEEEecC
Q 027659          170 SGPKTTILLGYEIRS  184 (220)
Q Consensus       170 l~~~g~~~i~~~~r~  184 (220)
                      |+|||.++++...-.
T Consensus       367 lkpgG~lvystcs~~  381 (445)
T PRK14904        367 LKPGGVLVYATCSIE  381 (445)
T ss_pred             cCCCcEEEEEeCCCC
Confidence            999999998875544

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.12  E-value=2.1e-09  Score=94.44  Aligned_cols=131  Identities=16%  Similarity=0.099  Sum_probs=87.0

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (220)
                      .++..++..+.           ..+|.+|||+|||+|..++.++.. + ++|+++|. +++++.+++|++.++.      
T Consensus       225 ~~s~~~~~~L~-----------~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~------  287 (426)
T TIGR00563       225 ASAQWVATWLA-----------PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL------  287 (426)
T ss_pred             HHHHHHHHHhC-----------CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC------
Confidence            45666666663           236789999999999999999875 3 58999998 6699999999998875      


Q ss_pred             CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC-------CC---------------ChHHHHHHHHHhhCCC
Q 027659          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA-------EH---------------LLEPLLQTIFALSGPK  173 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~-------~~---------------~~~~l~~~l~~~l~~~  173 (220)
                           ..++.....|....... ....+||.|++..+ -.       ++               ....++....++|+||
T Consensus       288 -----~~~v~~~~~d~~~~~~~-~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg  361 (426)
T TIGR00563       288 -----TIKAETKDGDGRGPSQW-AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG  361 (426)
T ss_pred             -----CeEEEEecccccccccc-ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                 11223333332211110 12467999997543 11       11               0256888888999999


Q ss_pred             cEEEEEEEecC----chHHHHHHH
Q 027659          174 TTILLGYEIRS----TSVHEQMLQ  193 (220)
Q Consensus       174 g~~~i~~~~r~----~~~~~~f~~  193 (220)
                      |.++++...-.    ..+.+.|++
T Consensus       362 G~lvystcs~~~~Ene~~v~~~l~  385 (426)
T TIGR00563       362 GTLVYATCSVLPEENSEQIKAFLQ  385 (426)
T ss_pred             cEEEEEeCCCChhhCHHHHHHHHH
Confidence            99988765443    223445554

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.12  E-value=9.5e-10  Score=90.98  Aligned_cols=93  Identities=11%  Similarity=0.066  Sum_probs=67.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC-----CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+.+|||+|||+|..+..+++..     ..|+++|+ +++++.++++.                 .++.+...|..+   
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------------~~~~~~~~d~~~---  144 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------------PQVTFCVASSHR---  144 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------------CCCeEEEeeccc---
Confidence            44689999999999999888652     36899999 56888876541                 245666655433   


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ++..++.||+|++...  +    ..++.+.++|+|||.++++.+.
T Consensus       145 lp~~~~sfD~I~~~~~--~----~~~~e~~rvLkpgG~li~~~p~  183 (272)
T PRK11088        145 LPFADQSLDAIIRIYA--P----CKAEELARVVKPGGIVITVTPG  183 (272)
T ss_pred             CCCcCCceeEEEEecC--C----CCHHHHHhhccCCCEEEEEeCC
Confidence            3344678999997544  2    2346788899999999987654

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.11  E-value=3e-10  Score=95.48  Aligned_cols=82  Identities=17%  Similarity=0.136  Sum_probs=58.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEE-eeeCCCC-C
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVE-LDWGNED-H  137 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~-ldw~~~~-~  137 (220)
                      .+.++||||||+|.+...++..  +.+++++|+ +.+++.+++|++.| ++           ..+|.+.. .+-.+.. .
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l-----------~~~I~~~~~~~~~~i~~~  182 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGL-----------NGAIRLRLQKDSKAIFKG  182 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------cCcEEEEEccchhhhhhc
Confidence            4578999999999777777654  678999999 66999999999999 56           34666643 1111111 0


Q ss_pred             ccccCCCccEEEEecCCCC
Q 027659          138 IKAVAPPFDYIIGTDVYAE  156 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~  156 (220)
                      .....+.||+|+||++|+.
T Consensus       183 i~~~~~~fDlivcNPPf~~  201 (321)
T PRK11727        183 IIHKNERFDATLCNPPFHA  201 (321)
T ss_pred             ccccCCceEEEEeCCCCcC
Confidence            1113568999999999443

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=9e-10  Score=96.20  Aligned_cols=139  Identities=14%  Similarity=0.106  Sum_probs=99.8

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      +..|.++..+..       ....+.++|||=||.|..|+.+|+...+|+++|+ +++++.+++|++.|+.          
T Consensus       278 ~ekl~~~a~~~~-------~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i----------  340 (432)
T COG2265         278 AEKLYETALEWL-------ELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI----------  340 (432)
T ss_pred             HHHHHHHHHHHH-------hhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC----------
Confidence            556666666553       3346678999999999999999999999999998 7899999999999987          


Q ss_pred             CCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcC
Q 027659          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSN  198 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~  198 (220)
                        .|+++...+-.+..........||.|+..++ =..+  +.+++.+.+ ++|..++|+++..   .++.+-+..+ ..+
T Consensus       341 --~N~~f~~~~ae~~~~~~~~~~~~d~VvvDPPR~G~~--~~~lk~l~~-~~p~~IvYVSCNP---~TlaRDl~~L~~~g  412 (432)
T COG2265         341 --DNVEFIAGDAEEFTPAWWEGYKPDVVVVDPPRAGAD--REVLKQLAK-LKPKRIVYVSCNP---ATLARDLAILASTG  412 (432)
T ss_pred             --CcEEEEeCCHHHHhhhccccCCCCEEEECCCCCCCC--HHHHHHHHh-cCCCcEEEEeCCH---HHHHHHHHHHHhCC
Confidence              4688888554443322222458999999998 3221  244454443 5678899998864   3445555555 457


Q ss_pred             CeEEEee
Q 027659          199 FNVKLVP  205 (220)
Q Consensus       199 f~v~~v~  205 (220)
                      ++++++.
T Consensus       413 y~i~~v~  419 (432)
T COG2265         413 YEIERVQ  419 (432)
T ss_pred             eEEEEEE
Confidence            7777763

>PLN02476 O-methyltransferase

Probab=99.09  E-value=2.4e-09  Score=88.24  Aligned_cols=129  Identities=12%  Similarity=0.204  Sum_probs=91.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~  138 (220)
                      +.++|||||+|+|..++.+|..   +.+|+.+|. ++.++.+++|++.++.           ..+|++...+..+.- .+
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----------~~~I~li~GdA~e~L~~l  186 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----------SHKVNVKHGLAAESLKSM  186 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            5789999999999999999964   447999998 6799999999999987           457888875443321 01


Q ss_pred             --cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCch------------HHHHHHHHHhc--CCeEE
Q 027659          139 --KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS------------VHEQMLQMWKS--NFNVK  202 (220)
Q Consensus       139 --~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~------------~~~~f~~~~~~--~f~v~  202 (220)
                        ....++||+|+.-.  ....+..++..+.++|+|||.+++-....+..            ..+.|.+.+..  .|+..
T Consensus       187 ~~~~~~~~FD~VFIDa--~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d~~t~~ir~fn~~v~~d~~~~~~  264 (278)
T PLN02476        187 IQNGEGSSYDFAFVDA--DKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVNDAKTISIRNFNKKLMDDKRVSIS  264 (278)
T ss_pred             HhcccCCCCCEEEECC--CHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCCHHHHHHHHHHHHHhhCCCEEEE
Confidence              01135899999543  35667888888899999999987653322221            14667666643  45555


Q ss_pred             Eee
Q 027659          203 LVP  205 (220)
Q Consensus       203 ~v~  205 (220)
                      .+|
T Consensus       265 llP  267 (278)
T PLN02476        265 MVP  267 (278)
T ss_pred             EEE
Confidence            554

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.08  E-value=6.2e-10  Score=88.39  Aligned_cols=114  Identities=21%  Similarity=0.260  Sum_probs=77.2

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CC--eEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (220)
                      +++.+...+.+..       ...+|.+|||+|||+|..+..+|.+ |.  +|+++|. ++.++.+++|+...+.      
T Consensus        56 s~P~~~a~~l~~L-------~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------  122 (209)
T PF01135_consen   56 SAPSMVARMLEAL-------DLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------  122 (209)
T ss_dssp             --HHHHHHHHHHT-------TC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------
T ss_pred             hHHHHHHHHHHHH-------hcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------
Confidence            4555555555553       4558899999999999999999986 43  5999997 6799999999998875      


Q ss_pred             CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                            .+|.+...|-..   ......+||.|+.+....     .+-..+.+.|++||++++...
T Consensus       123 ------~nv~~~~gdg~~---g~~~~apfD~I~v~~a~~-----~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  123 ------DNVEVVVGDGSE---GWPEEAPFDRIIVTAAVP-----EIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             ------HSEEEEES-GGG---TTGGG-SEEEEEESSBBS-----S--HHHHHTEEEEEEEEEEES
T ss_pred             ------CceeEEEcchhh---ccccCCCcCEEEEeeccc-----hHHHHHHHhcCCCcEEEEEEc
Confidence                  478888855322   112346899999876521     122445567899999888654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.06  E-value=1e-09  Score=85.80  Aligned_cols=98  Identities=18%  Similarity=0.160  Sum_probs=78.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .-.+|.|||||+|..+-.++++  ++.|+++|- ++|++.++..                 ..++++...|.....    
T Consensus        30 ~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----------------lp~~~f~~aDl~~w~----   88 (257)
T COG4106          30 RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----------------LPDATFEEADLRTWK----   88 (257)
T ss_pred             ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----------------CCCCceecccHhhcC----
Confidence            4458999999999999999976  678999998 6799887543                 246677765443332    


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +...+|++++|.+ .+-.++..++..+-..|.|||++-+-.+.
T Consensus        89 p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPd  131 (257)
T COG4106          89 PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPD  131 (257)
T ss_pred             CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCC
Confidence            4568999999999 88888899999999999999998876654

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=99.04  E-value=1.2e-10  Score=94.59  Aligned_cols=149  Identities=23%  Similarity=0.281  Sum_probs=98.9

Q ss_pred             CCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHHH-HHH
Q 027659           29 PNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLK-RNV  105 (220)
Q Consensus        29 ~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~~-~n~  105 (220)
                      |+....|.++|.++..|..++.... .+   .-.+.|++|||||||+|+.++.+...| .+|.+.|+ .+.++.-. .|+
T Consensus        85 p~vyEGg~k~wecS~dl~~~l~~e~-~~---~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~  160 (282)
T KOG2920|consen   85 PGVYEGGLKLWECSVDLLPYLKEEI-GA---QMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNI  160 (282)
T ss_pred             CceeecceEEeecHHHHHHHHHHHh-hh---heEecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccce
Confidence            3356789999999999999998663 00   245689999999999999999999988 46999998 45663222 233


Q ss_pred             HHhhhhhccCCCCCCCCCceEEEEe---eeCCCCCccccCCCccEEEEecC-CCCCChHHH-HHHHHHhhCCCcEEEEEE
Q 027659          106 EWNTSRISQMNPGSDLLGSIQAVEL---DWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPL-LQTIFALSGPKTTILLGY  180 (220)
Q Consensus       106 ~~n~~~~~~~~~~~~~~~~v~~~~l---dw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l-~~~l~~~l~~~g~~~i~~  180 (220)
                      ..|.....+..   ....-.....-   ||.....   ..-+||+|+++.. |.....+.+ ..+...+++++|++|++.
T Consensus       161 ~~~~~~~~~~~---e~~~~~~i~~s~l~dg~~~~t---~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~aA  234 (282)
T KOG2920|consen  161 LVNSHAGVEEK---ENHKVDEILNSLLSDGVFNHT---ERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVAA  234 (282)
T ss_pred             ecchhhhhhhh---hcccceeccccccccchhhhc---cccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhhh
Confidence            22221100000   00001111111   5522110   0138999999999 999998888 777777889999999988


Q ss_pred             EecCchH
Q 027659          181 EIRSTSV  187 (220)
Q Consensus       181 ~~r~~~~  187 (220)
                      +.....+
T Consensus       235 K~~yFgV  241 (282)
T KOG2920|consen  235 KKLYFGV  241 (282)
T ss_pred             HhhccCc
Confidence            7666543

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.04  E-value=6e-10  Score=88.21  Aligned_cols=129  Identities=16%  Similarity=0.179  Sum_probs=91.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~  138 (220)
                      +.++||||||++|.-++.+|..   +++|+.+|. ++..+.+++|++..+.           ..+|++...|..+.-. +
T Consensus        45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----------~~~I~~~~gda~~~l~~l  113 (205)
T PF01596_consen   45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----------DDRIEVIEGDALEVLPEL  113 (205)
T ss_dssp             T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----------GGGEEEEES-HHHHHHHH
T ss_pred             CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----------CCcEEEEEeccHhhHHHH
Confidence            5679999999999999999964   568999998 6799999999999887           4688998855543211 1


Q ss_pred             c--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc----------h--HHHHHHHHHhc--CCeEE
Q 027659          139 K--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----------S--VHEQMLQMWKS--NFNVK  202 (220)
Q Consensus       139 ~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~----------~--~~~~f~~~~~~--~f~v~  202 (220)
                      .  ...++||+|+.-  -....+...+..+.++|+|||.+++-......          .  ....|.+.+..  .|+..
T Consensus       114 ~~~~~~~~fD~VFiD--a~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~~~~~~ir~f~~~i~~d~~~~~~  191 (205)
T PF01596_consen  114 ANDGEEGQFDFVFID--ADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDEDPKTVAIREFNEYIANDPRFETV  191 (205)
T ss_dssp             HHTTTTTSEEEEEEE--STGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGSHHHHHHHHHHHHHHH-TTEEEE
T ss_pred             HhccCCCceeEEEEc--ccccchhhHHHHHhhhccCCeEEEEccccccceecCccchhhhHHHHHHHHHHHHhCCCeeEE
Confidence            1  113589999954  34667788888888999999998875332221          1  13466666654  45555


Q ss_pred             Eee
Q 027659          203 LVP  205 (220)
Q Consensus       203 ~v~  205 (220)
                      .+|
T Consensus       192 llp  194 (205)
T PF01596_consen  192 LLP  194 (205)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            444

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.03  E-value=2.6e-09  Score=84.83  Aligned_cols=128  Identities=17%  Similarity=0.172  Sum_probs=93.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEE-eeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVE-LDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~-ldw~~~~~~  138 (220)
                      ..++|||||+++|.-++.+|..   ..++|.+|. ++..+.+++|++..+.           ..+|.... +|+.+.-..
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----------~~~i~~~~~gdal~~l~~  127 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----------DDRIELLLGGDALDVLSR  127 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------cceEEEEecCcHHHHHHh
Confidence            6789999999999999999964   247999998 6799999999999987           45577766 455443221


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc----h--------H--HHHHHHHHhc--CCeEE
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----S--------V--HEQMLQMWKS--NFNVK  202 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~----~--------~--~~~f~~~~~~--~f~v~  202 (220)
                       ...++||+|+.-  .....++.++..+.++|+|||.+++-.-....    .        +  .+.|.+...+  .++..
T Consensus       128 -~~~~~fDliFID--adK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  204 (219)
T COG4122         128 -LLDGSFDLVFID--ADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSIRDARTQVRGVRDFNDYLLEDPRYDTV  204 (219)
T ss_pred             -ccCCCccEEEEe--CChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccchhHHHHHHHHHHHHHHHhhCcCceeE
Confidence             246899999932  56777889999999999999998875433331    0        1  3556666544  46665


Q ss_pred             Eee
Q 027659          203 LVP  205 (220)
Q Consensus       203 ~v~  205 (220)
                      .+|
T Consensus       205 ~lP  207 (219)
T COG4122         205 LLP  207 (219)
T ss_pred             EEe
Confidence            565

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.99  E-value=2.6e-09  Score=92.24  Aligned_cols=98  Identities=18%  Similarity=0.231  Sum_probs=74.1

Q ss_pred             CCcEEEeCCcccHHHHHHHHh-CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           65 GKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +.+|||++||+|..|+.+|.. ++ +|+++|. +++++.+++|++.|+.            .++.+...|....  +.. 
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~------------~~~~v~~~Da~~~--l~~-  122 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL------------ENEKVFNKDANAL--LHE-  122 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CceEEEhhhHHHH--Hhh-
Confidence            458999999999999999875 43 7999998 6799999999999986            2455666544221  111 


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .+.||+|+.. +|  ....++++.....++++|.++++.
T Consensus       123 ~~~fD~V~lD-P~--Gs~~~~l~~al~~~~~~gilyvSA  158 (382)
T PRK04338        123 ERKFDVVDID-PF--GSPAPFLDSAIRSVKRGGLLCVTA  158 (382)
T ss_pred             cCCCCEEEEC-CC--CCcHHHHHHHHHHhcCCCEEEEEe
Confidence            3579999985 44  334677787666789999999983

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.99  E-value=5.8e-09  Score=81.81  Aligned_cols=117  Identities=18%  Similarity=0.258  Sum_probs=84.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ...-|||||||+|+.|-.+...|...+++|+ +.||+.+.+. +..                -.+...|.|..  ++..+
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~-e~e----------------gdlil~DMG~G--lpfrp  110 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVER-ELE----------------GDLILCDMGEG--LPFRP  110 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHh-hhh----------------cCeeeeecCCC--CCCCC
Confidence            5667999999999999999999988999999 6799988762 111                14455566643  55678


Q ss_pred             CCccEEEEecC--C--------CCC--ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHH-HHhcCC
Q 027659          143 PPFDYIIGTDV--Y--------AEH--LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ-MWKSNF  199 (220)
Q Consensus       143 ~~fD~V~~~d~--y--------~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~-~~~~~f  199 (220)
                      +.||-+|+-..  +        +..  -+..++.++..+|++++.+++-+...+.+..+...+ ..+.+|
T Consensus       111 GtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q~d~i~~~a~~aGF  180 (270)
T KOG1541|consen  111 GTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQIDMIMQQAMKAGF  180 (270)
T ss_pred             CccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHHHHHHHHHHHhhcc
Confidence            89998876432  2        211  134578889999999999999887777655444443 445665

>PRK00811 spermidine synthase; Provisional

Probab=98.95  E-value=1.1e-08  Score=85.23  Aligned_cols=128  Identities=13%  Similarity=0.028  Sum_probs=83.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      +.++||+||||.|..+..+++. + .+|+++|+ +++++.++++........       ....++++...|....  +..
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-------~~d~rv~v~~~Da~~~--l~~  146 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA-------YDDPRVELVIGDGIKF--VAE  146 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc-------ccCCceEEEECchHHH--Hhh
Confidence            4578999999999999988876 4 36999999 669999998875432100       0135777777554322  112


Q ss_pred             cCCCccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEEe--cCchHHHHHHHHHhcCCe
Q 027659          141 VAPPFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  200 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~~--r~~~~~~~f~~~~~~~f~  200 (220)
                      ..++||+|++.-.  +...   ....+++.+++.|+|||++++-...  ..........+.+++.|.
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~~F~  213 (283)
T PRK00811        147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKEVFP  213 (283)
T ss_pred             CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHHHCC
Confidence            3568999998533  3222   1367888999999999998764321  122234444555555553

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.95  E-value=2.6e-08  Score=85.29  Aligned_cols=161  Identities=17%  Similarity=0.171  Sum_probs=98.0

Q ss_pred             ecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hh
Q 027659           18 VLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IE   96 (220)
Q Consensus        18 ~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~   96 (220)
                      +.+..+.++..++++.-  .-+.....|.+++.+..       ...++ ++|||-||+|..|+.+|....+|+++|. ++
T Consensus       160 ~~~~~~~~~~~~~sFfQ--vN~~~~~~l~~~~~~~l-------~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~  229 (352)
T PF05958_consen  160 IQDKGLSFRISPGSFFQ--VNPEQNEKLYEQALEWL-------DLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEE  229 (352)
T ss_dssp             ECCCTEEEEEETTS-----SBHHHHHHHHHHHHHHC-------TT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HH
T ss_pred             eeccceEEEECCCcCcc--CcHHHHHHHHHHHHHHh-------hcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHH
Confidence            44445666666654432  23345667777776653       22233 7999999999999999999999999998 67


Q ss_pred             hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC----------cc---ccCCCccEEEEecC-CCCCChHHH
Q 027659           97 VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH----------IK---AVAPPFDYIIGTDV-YAEHLLEPL  162 (220)
Q Consensus        97 ~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~----------~~---~~~~~fD~V~~~d~-y~~~~~~~l  162 (220)
                      +++.|++|++.|+.            .++++...+-.+...          ..   .....+|+|+.-|+ =...  +.+
T Consensus       230 av~~A~~Na~~N~i------------~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~--~~~  295 (352)
T PF05958_consen  230 AVEDARENAKLNGI------------DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLD--EKV  295 (352)
T ss_dssp             HHHHHHHHHHHTT--------------SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SC--HHH
T ss_pred             HHHHHHHHHHHcCC------------CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch--HHH
Confidence            99999999999997            578888754432211          00   11236899999888 3322  345


Q ss_pred             HHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEeeCCC
Q 027659          163 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAK  208 (220)
Q Consensus       163 ~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~~~~  208 (220)
                      ++.+.+   ..-++|+++...+-.  +. +..+.++|+++.+.--+
T Consensus       296 ~~~~~~---~~~ivYvSCnP~tla--RD-l~~L~~~y~~~~v~~~D  335 (352)
T PF05958_consen  296 IELIKK---LKRIVYVSCNPATLA--RD-LKILKEGYKLEKVQPVD  335 (352)
T ss_dssp             HHHHHH---SSEEEEEES-HHHHH--HH-HHHHHCCEEEEEEEEE-
T ss_pred             HHHHhc---CCeEEEEECCHHHHH--HH-HHHHhhcCEEEEEEEee
Confidence            555443   457888888764432  22 33445689888774333

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.94  E-value=3.3e-08  Score=79.40  Aligned_cols=116  Identities=15%  Similarity=0.053  Sum_probs=86.1

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHH-hCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMAL-LGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~-~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ....|.+|||.|.|+|.++.++|. .|.  +|+..|+ ++..+.|++|++..++           .+++.....|..+..
T Consensus        91 gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----------~d~v~~~~~Dv~~~~  159 (256)
T COG2519          91 GISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----------GDRVTLKLGDVREGI  159 (256)
T ss_pred             CCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----------ccceEEEeccccccc
Confidence            456899999999999999999996 454  6999998 7799999999999876           344777775554433


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  197 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~  197 (220)
                          ..+.||.|+.-    ..+....+..+..+|+|||.+.+-.+.-.+  .++-.+.+++
T Consensus       160 ----~~~~vDav~LD----mp~PW~~le~~~~~Lkpgg~~~~y~P~veQ--v~kt~~~l~~  210 (256)
T COG2519         160 ----DEEDVDAVFLD----LPDPWNVLEHVSDALKPGGVVVVYSPTVEQ--VEKTVEALRE  210 (256)
T ss_pred             ----cccccCEEEEc----CCChHHHHHHHHHHhCCCcEEEEEcCCHHH--HHHHHHHHHh
Confidence                23489999854    345678899999999999988776554322  2334444443

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.93  E-value=1.8e-08  Score=82.83  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=60.4

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||+|||+|.++..+++.+.+|+++|. +.+++.+++++..  .            .++++...|..+..    
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~------------~~v~ii~~D~~~~~----   88 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A------------GNVEIIEGDALKVD----   88 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C------------CCEEEEEeccccCC----
Confidence            346789999999999999999999889999999 5699999887643  1            36788887665432    


Q ss_pred             cCCCccEEEEecCCCCC
Q 027659          141 VAPPFDYIIGTDVYAEH  157 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~  157 (220)
                       ...||.|++|.+|+..
T Consensus        89 -~~~~d~Vv~NlPy~i~  104 (258)
T PRK14896         89 -LPEFNKVVSNLPYQIS  104 (258)
T ss_pred             -chhceEEEEcCCcccC
Confidence             2358999999886543

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.92  E-value=1.5e-08  Score=84.52  Aligned_cols=80  Identities=20%  Similarity=0.235  Sum_probs=63.9

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||+|||+|.++..++..+.+|+++|+ +++++.+++++..++.           ..++++...|+....    
T Consensus        34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-----------~~~v~ii~~Dal~~~----   98 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-----------ASKLEVIEGDALKTE----   98 (294)
T ss_pred             CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-----------CCcEEEEECCHhhhc----
Confidence            346779999999999999999998889999999 5699999999876543           357888887665432    


Q ss_pred             cCCCccEEEEecCCCCC
Q 027659          141 VAPPFDYIIGTDVYAEH  157 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~  157 (220)
                       ...||.|++|.+|+..
T Consensus        99 -~~~~d~VvaNlPY~Is  114 (294)
T PTZ00338         99 -FPYFDVCVANVPYQIS  114 (294)
T ss_pred             -ccccCEEEecCCcccC
Confidence             2468999998886655

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.92  E-value=5.3e-09  Score=83.08  Aligned_cols=107  Identities=18%  Similarity=0.228  Sum_probs=82.2

Q ss_pred             cEEEeCCcccHHHHHHHHhC----CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cccc
Q 027659           67 RVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA  140 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~~  140 (220)
                      +|||+|||.|-...-+.+-.    -+|.+.|. |.+++..+.|...+..             ++.....|...+. ..+.
T Consensus        74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~-------------~~~afv~Dlt~~~~~~~~  140 (264)
T KOG2361|consen   74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDES-------------RVEAFVWDLTSPSLKEPP  140 (264)
T ss_pred             hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchh-------------hhcccceeccchhccCCC
Confidence            79999999999888887653    36999998 6799999998776643             4555555555444 2233


Q ss_pred             cCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659          141 VAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS  186 (220)
Q Consensus       141 ~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~  186 (220)
                      ..+.+|+|++--+   -+++.....++.+.++|+|||.+++....|..-
T Consensus       141 ~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dl  189 (264)
T KOG2361|consen  141 EEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDL  189 (264)
T ss_pred             CcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchH
Confidence            4678999987666   567788999999999999999999987666553

>PRK04148 hypothetical protein; Provisional

Probab=98.91  E-value=1.4e-08  Score=74.52  Aligned_cols=82  Identities=21%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccH-HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCC
Q 027659           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL  121 (220)
Q Consensus        44 ~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~  121 (220)
                      .+++||.++.       ...+++++||+|||+|. ++..+++.|.+|+++|. +++++.++.+    +            
T Consensus         3 ~i~~~l~~~~-------~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~----~------------   59 (134)
T PRK04148          3 TIAEFIAENY-------EKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL----G------------   59 (134)
T ss_pred             HHHHHHHHhc-------ccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh----C------------
Confidence            3677877764       23366899999999996 99999999999999999 5577666544    2            


Q ss_pred             CCceEEEEeeeCCCCCccccCCCccEEEEecC
Q 027659          122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV  153 (220)
Q Consensus       122 ~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~  153 (220)
                         +.+...|+.++...  .-+.+|+|.+.-+
T Consensus        60 ---~~~v~dDlf~p~~~--~y~~a~liysirp   86 (134)
T PRK04148         60 ---LNAFVDDLFNPNLE--IYKNAKLIYSIRP   86 (134)
T ss_pred             ---CeEEECcCCCCCHH--HHhcCCEEEEeCC
Confidence               36777777655321  2467899988766

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.91  E-value=1.8e-08  Score=83.38  Aligned_cols=78  Identities=17%  Similarity=0.187  Sum_probs=59.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||+|||+|.++..+++.+.+|+++|. +++++.+++++..               .++++...|+.+.. .  
T Consensus        40 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~---------------~~v~~i~~D~~~~~-~--  101 (272)
T PRK00274         40 PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE---------------DNLTIIEGDALKVD-L--  101 (272)
T ss_pred             CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc---------------CceEEEEChhhcCC-H--
Confidence            346779999999999999999998889999999 6699998876532               36788887776542 1  


Q ss_pred             cCCCccEEEEecCCCCC
Q 027659          141 VAPPFDYIIGTDVYAEH  157 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~  157 (220)
                      ....++.|++|.+|+..
T Consensus       102 ~~~~~~~vv~NlPY~is  118 (272)
T PRK00274        102 SELQPLKVVANLPYNIT  118 (272)
T ss_pred             HHcCcceEEEeCCccch
Confidence            11116899999886654

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.90  E-value=7.6e-09  Score=82.76  Aligned_cols=155  Identities=19%  Similarity=0.196  Sum_probs=100.5

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecch-hhHHHHH-HHHHHhhhhhccCCC-
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLK-RNVEWNTSRISQMNP-  117 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~-~~l~~~~-~n~~~n~~~~~~~~~-  117 (220)
                      .++.|.+|+.+.        ....+.+||..|||.|.-.+.+|..|.+|+++|++ .+++.+. +|-......  .... 
T Consensus        22 ~~p~L~~~~~~l--------~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~--~~~~~   91 (218)
T PF05724_consen   22 PNPALVEYLDSL--------ALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVT--SVGGF   91 (218)
T ss_dssp             STHHHHHHHHHH--------TTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECT--TCTTE
T ss_pred             CCHHHHHHHHhc--------CCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcc--cccce
Confidence            378899998863        23356799999999999999999999999999995 5888763 222111100  0000 


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEE-EEEec-----Cch--
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILL-GYEIR-----STS--  186 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i-~~~~r-----~~~--  186 (220)
                      ......+|++.+.|.-+...  ...++||+|+=..+   -.++..+..++.+.++|+|+|.+++ +..-.     .+.  
T Consensus        92 ~~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf~  169 (218)
T PF05724_consen   92 KRYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPFS  169 (218)
T ss_dssp             EEETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS--
T ss_pred             eeecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCCC
Confidence            00124567888855544221  12258999987665   5677889999999999999999443 32211     111  


Q ss_pred             -HHHHHHHHHhcCCeEEEeeCC
Q 027659          187 -VHEQMLQMWKSNFNVKLVPKA  207 (220)
Q Consensus       187 -~~~~f~~~~~~~f~v~~v~~~  207 (220)
                       ..+...+.+..+|+++.+...
T Consensus       170 v~~~ev~~l~~~~f~i~~l~~~  191 (218)
T PF05724_consen  170 VTEEEVRELFGPGFEIEELEEE  191 (218)
T ss_dssp             --HHHHHHHHTTTEEEEEEEEE
T ss_pred             CCHHHHHHHhcCCcEEEEEecc
Confidence             145666777889998877643

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.90  E-value=5.5e-09  Score=83.96  Aligned_cols=113  Identities=18%  Similarity=0.102  Sum_probs=72.8

Q ss_pred             cccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHH-HHHHHHHhhhhhc
Q 027659           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL-LKRNVEWNTSRIS  113 (220)
Q Consensus        37 ~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~-~~~n~~~n~~~~~  113 (220)
                      .+++++.-|...+...       +...++++|||+|||||.++..+++.|+ +|+++|. +.++.. ++.+.+.-..   
T Consensus        55 ~vsr~~~kL~~~l~~~-------~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~---  124 (228)
T TIGR00478        55 FVSRGGEKLKEALEEF-------NIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVL---  124 (228)
T ss_pred             hhhhhHHHHHHHHHhc-------CCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEe---
Confidence            5678888999888765       2456899999999999999999999987 5999998 445543 3333210000   


Q ss_pred             cCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       114 ~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                             ...+++  .++|.+..  . .-..+|+++++-.       .++..+..+|++ |.+++-
T Consensus       125 -------~~~ni~--~~~~~~~~--~-d~~~~DvsfiS~~-------~~l~~i~~~l~~-~~~~~L  170 (228)
T TIGR00478       125 -------ERTNIR--YVTPADIF--P-DFATFDVSFISLI-------SILPELDLLLNP-NDLTLL  170 (228)
T ss_pred             -------ecCCcc--cCCHhHcC--C-CceeeeEEEeehH-------hHHHHHHHHhCc-CeEEEE
Confidence                   012333  44454432  1 1236777776633       357777888888 665544

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.90  E-value=5.5e-09  Score=82.28  Aligned_cols=96  Identities=21%  Similarity=0.178  Sum_probs=69.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHH--hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .+|..|+|+.||.|..++.+|+  .+..|++.|. |++++.+++|++.|++           ..++.....|..+...  
T Consensus       100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv-----------~~~i~~~~~D~~~~~~--  166 (200)
T PF02475_consen  100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKV-----------ENRIEVINGDAREFLP--  166 (200)
T ss_dssp             -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT------------TTTEEEEES-GGG-----
T ss_pred             CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCC-----------CCeEEEEcCCHHHhcC--
Confidence            3678999999999999999998  5667999999 7899999999999987           4678888876654421  


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                        ...||.|+.+.+ ..    ..++.....+++++|.+.
T Consensus       167 --~~~~drvim~lp~~~----~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  167 --EGKFDRVIMNLPESS----LEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             --TT-EEEEEE--TSSG----GGGHHHHHHHEEEEEEEE
T ss_pred             --ccccCEEEECChHHH----HHHHHHHHHHhcCCcEEE
Confidence              678999999887 33    346666777788887653

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.89  E-value=6.3e-09  Score=80.51  Aligned_cols=96  Identities=15%  Similarity=0.144  Sum_probs=66.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHH-hCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~-~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +|.+|||||||.|.+-..+.. ++.+.+++|++ +.+..+.    .++               +.+.+.|..+.- ...+
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv----~rG---------------v~Viq~Dld~gL-~~f~   72 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV----ARG---------------VSVIQGDLDEGL-ADFP   72 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH----HcC---------------CCEEECCHHHhH-hhCC
Confidence            578999999999988877775 67889999984 4333222    223               466776665431 2246


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +++||+||.+.+ -.....+.+++.+   |+-|..+++++++
T Consensus        73 d~sFD~VIlsqtLQ~~~~P~~vL~Em---lRVgr~~IVsFPN  111 (193)
T PF07021_consen   73 DQSFDYVILSQTLQAVRRPDEVLEEM---LRVGRRAIVSFPN  111 (193)
T ss_pred             CCCccEEehHhHHHhHhHHHHHHHHH---HHhcCeEEEEecC
Confidence            789999999999 6656667776655   4556677777653

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.87  E-value=2.3e-08  Score=81.18  Aligned_cols=97  Identities=19%  Similarity=0.192  Sum_probs=76.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..++|||||+|.|..+..+++.  +.+++..|.|++++.+++      .            .+|++...|+-+.     .
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~------~------------~rv~~~~gd~f~~-----~  156 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE------A------------DRVEFVPGDFFDP-----L  156 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH------T------------TTEEEEES-TTTC-----C
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc------c------------cccccccccHHhh-----h
Confidence            4568999999999999999976  457999999998888877      1            4899999777622     2


Q ss_pred             CCCccEEEEecC---CCCCChHHHHHHHHHhhCCC--cEEEEEEEecC
Q 027659          142 APPFDYIIGTDV---YAEHLLEPLLQTIFALSGPK--TTILLGYEIRS  184 (220)
Q Consensus       142 ~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~--g~~~i~~~~r~  184 (220)
                      +. +|+|+.+.+   |.++....+++.+...|+||  |+++|......
T Consensus       157 P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~  203 (241)
T PF00891_consen  157 PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLP  203 (241)
T ss_dssp             SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEEC
T ss_pred             cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccC
Confidence            34 999999999   45566788999999999988  99999987643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR00417 speE spermidine synthase

Probab=98.87  E-value=3.4e-08  Score=81.69  Aligned_cols=107  Identities=13%  Similarity=-0.005  Sum_probs=72.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++||+||||+|..+..+++..  .+|+++|+ +++++.++++.......        -...++++...|....  +..
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~--------~~~~~v~i~~~D~~~~--l~~  141 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGS--------YDDPRVDLQIDDGFKF--LAD  141 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhccc--------ccCCceEEEECchHHH--HHh
Confidence            34699999999999888887764  46999999 56999999887543210        0123566655332111  111


Q ss_pred             cCCCccEEEEecC--CCCC-C--hHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTDV--YAEH-L--LEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~-~--~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ..++||+|++...  .... .  ...+++.+.++|+|||.+++..
T Consensus       142 ~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~  186 (270)
T TIGR00417       142 TENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQS  186 (270)
T ss_pred             CCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence            2568999998655  2211 1  4678889999999999988753

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.86  E-value=5.5e-08  Score=81.67  Aligned_cols=136  Identities=16%  Similarity=0.137  Sum_probs=96.7

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      .+.||+.+..-       ....+|..|||=-||||-.-+.+...|++|+++|+. .|++-++.|++..+.          
T Consensus       182 ~P~lAR~mVNL-------a~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i----------  244 (347)
T COG1041         182 DPRLARAMVNL-------ARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI----------  244 (347)
T ss_pred             CHHHHHHHHHH-------hccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc----------
Confidence            45666666543       245588899999999999999999999999999995 599999999998764          


Q ss_pred             CCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC----------hHHHHHHHHHhhCCCcEEEEEEEecCchHHHH
Q 027659          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL----------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQ  190 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~----------~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~  190 (220)
                        ....+  +...+...++.....+|.|++-++|..+.          +..++.++.++|++||.+.++.+..      .
T Consensus       245 --~~~~~--~~~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~------~  314 (347)
T COG1041         245 --EDYPV--LKVLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRD------P  314 (347)
T ss_pred             --CceeE--EEecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCc------c
Confidence              12222  22223333443445699998877776443          6778888899999999999988721      2


Q ss_pred             HHHHHhcCCeEEEe
Q 027659          191 MLQMWKSNFNVKLV  204 (220)
Q Consensus       191 f~~~~~~~f~v~~v  204 (220)
                      +.+..+.+|++...
T Consensus       315 ~~~~~~~~f~v~~~  328 (347)
T COG1041         315 RHELEELGFKVLGR  328 (347)
T ss_pred             hhhHhhcCceEEEE
Confidence            22334557777543

>PRK03612 spermidine synthase; Provisional

Probab=98.86  E-value=2.6e-08  Score=89.55  Aligned_cols=132  Identities=14%  Similarity=0.061  Sum_probs=85.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      +.++|||||||+|..+..+++.+  .+|+++|+ +++++.+++|...+.....     .-..+++++...|-.+.  ...
T Consensus       297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~-----~~~dprv~vi~~Da~~~--l~~  369 (521)
T PRK03612        297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG-----ALDDPRVTVVNDDAFNW--LRK  369 (521)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc-----ccCCCceEEEEChHHHH--HHh
Confidence            46789999999999999988775  47999999 6799999986432221000     00134677777543321  112


Q ss_pred             cCCCccEEEEecC-CCCC-----ChHHHHHHHHHhhCCCcEEEEEEEe--cCchHHHHHHHHHhc-CCeEE
Q 027659          141 VAPPFDYIIGTDV-YAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKS-NFNVK  202 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~-----~~~~l~~~l~~~l~~~g~~~i~~~~--r~~~~~~~f~~~~~~-~f~v~  202 (220)
                      ..++||+|+++.. ....     .-.++.+.++++|+|||.+++....  ...+.+....+.+++ +|.+.
T Consensus       370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~gf~v~  440 (521)
T PRK03612        370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAGLATT  440 (521)
T ss_pred             CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcCCEEE
Confidence            3468999999755 2211     1246888999999999998875321  122334555666665 48443

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.85  E-value=1.2e-08  Score=89.66  Aligned_cols=99  Identities=18%  Similarity=0.225  Sum_probs=72.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      +++.|||+|||+|.++..+++.+      .+|++++- +.++..+++.+..|+.           .++|++...|..+..
T Consensus       186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----------~~~V~vi~~d~r~v~  254 (448)
T PF05185_consen  186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----------GDKVTVIHGDMREVE  254 (448)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----------TTTEEEEES-TTTSC
T ss_pred             cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----------CCeEEEEeCcccCCC
Confidence            46889999999999999888775      36999998 4577777777778876           578999996555443


Q ss_pred             CccccCCCccEEEEecC-C--CCCChHHHHHHHHHhhCCCcEEE
Q 027659          137 HIKAVAPPFDYIIGTDV-Y--AEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~-y--~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                          .+.+.|+||+--+ +  ..+..+..+....+.|+|+|+++
T Consensus       255 ----lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  255 ----LPEKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             ----HSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             ----CCCceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence                3569999999877 3  23467778888899999998665

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.85  E-value=1.4e-08  Score=87.40  Aligned_cols=99  Identities=19%  Similarity=0.228  Sum_probs=76.7

Q ss_pred             CCcEEEeCCcccHHHHHHHHh--CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           65 GKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      +.+|||+.||+|..|+.++..  |+ +|++.|. +++++.+++|++.|+.            .++.+...|.....  ..
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------------~~~~v~~~Da~~~l--~~  110 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------------ENIEVPNEDAANVL--RY  110 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEchhHHHHH--HH
Confidence            358999999999999999986  55 5999998 7799999999999975            35666665443321  11


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ...+||+|.. |+|.  ...++++.+.+.++++|.++++.
T Consensus       111 ~~~~fDvIdl-DPfG--s~~~fld~al~~~~~~glL~vTa  147 (374)
T TIGR00308       111 RNRKFHVIDI-DPFG--TPAPFVDSAIQASAERGLLLVTA  147 (374)
T ss_pred             hCCCCCEEEe-CCCC--CcHHHHHHHHHhcccCCEEEEEe
Confidence            2357999987 5553  34578888888899999999985

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.85  E-value=1.9e-08  Score=81.77  Aligned_cols=103  Identities=16%  Similarity=0.052  Sum_probs=78.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~  138 (220)
                      +.++|||||+++|.-++.+|..   +.+|+.+|. ++..+.++.|++..+.           ..+|++...+..+.-. +
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----------~~~I~~~~G~a~e~L~~l  147 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----------AHKIDFREGPALPVLDQM  147 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeccHHHHHHHH
Confidence            5579999999999999999864   458999998 6688999999998876           4688888755433211 1


Q ss_pred             cc---cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          139 KA---VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       139 ~~---~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ..   ..++||+|+.-  .+...+...+..+.++|+|||.+++-
T Consensus       148 ~~~~~~~~~fD~iFiD--adK~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        148 IEDGKYHGTFDFIFVD--ADKDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             HhccccCCcccEEEec--CCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence            00   13689999943  44666778888888999999997754

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.81  E-value=7.6e-09  Score=82.19  Aligned_cols=98  Identities=17%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             cEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCc
Q 027659           67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF  145 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~f  145 (220)
                      .++|+|||+|..++.+|..--+|++||. +.||+.+++.-...-.           ....+...   .+...+...+++.
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~-----------~t~~~ms~---~~~v~L~g~e~SV  101 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC-----------HTPSTMSS---DEMVDLLGGEESV  101 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc-----------cCCccccc---cccccccCCCcce
Confidence            7999999999999999988667999998 5589877653221111           00011110   0111222236899


Q ss_pred             cEEEEecCCCCCChHHHHHHHHHhhCCCc-EEEE
Q 027659          146 DYIIGTDVYAEHLLEPLLQTIFALSGPKT-TILL  178 (220)
Q Consensus       146 D~V~~~d~y~~~~~~~l~~~l~~~l~~~g-~~~i  178 (220)
                      |+|+++.+.|.-+++.+.+.+.++|++.| .+.+
T Consensus       102 DlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  102 DLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             eeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence            99999999444558999999999998766 4433

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.81  E-value=3.3e-08  Score=77.72  Aligned_cols=88  Identities=17%  Similarity=0.162  Sum_probs=61.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+.+|||+|||+|..+..++.. +..++++|. +++++.++.    +               ++++...|..+.. .+..
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~----~---------------~~~~~~~d~~~~l-~~~~   72 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA----R---------------GVNVIQGDLDEGL-EAFP   72 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH----c---------------CCeEEEEEhhhcc-cccC
Confidence            5678999999999999888754 557899998 557766542    1               2455555543311 1123


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhC
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSG  171 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~  171 (220)
                      +++||+|+++.+ ++......+++.+.+.++
T Consensus        73 ~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~  103 (194)
T TIGR02081        73 DKSFDYVILSQTLQATRNPEEILDEMLRVGR  103 (194)
T ss_pred             CCCcCEEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence            568999999999 777777777777766554

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.78  E-value=5.3e-08  Score=77.47  Aligned_cols=120  Identities=15%  Similarity=0.352  Sum_probs=78.0

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHH-hCCe-EEEecch-hhHHHHHHHHHHhhhhhccCC------------CCC------
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQI-EVLPLLKRNVEWNTSRISQMN------------PGS------  119 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~-~g~~-v~~~D~~-~~l~~~~~n~~~n~~~~~~~~------------~~~------  119 (220)
                      ..+.++.+||+||-+|.+++.+|+ .|++ |+++|++ ..+..|+.|++--........            |.+      
T Consensus        55 ~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   55 DWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             cccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            566889999999999999999997 5775 9999995 588999998875322110000            000      


Q ss_pred             -----CCCCceEEEEeee--CCCCCccccCCCccEEEEecC-------CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          120 -----DLLGSIQAVELDW--GNEDHIKAVAPPFDYIIGTDV-------YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       120 -----~~~~~v~~~~ldw--~~~~~~~~~~~~fD~V~~~d~-------y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                           .-..++.+.....  ...+-+......||+|+|-.+       ++++-+..+++.+.++|.|||++++--
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP  209 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP  209 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC
Confidence                 0011111111000  000001224578999999876       235558899999999999999998853

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.75  E-value=1.9e-07  Score=75.79  Aligned_cols=122  Identities=16%  Similarity=0.109  Sum_probs=82.1

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      +...|.+|||-|.|+|.++.++++. |  .+|+..|. ++..+.+++|++.+++           ..++.+...|.....
T Consensus        37 ~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----------~~~v~~~~~Dv~~~g  105 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----------DDNVTVHHRDVCEEG  105 (247)
T ss_dssp             T--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----------CTTEEEEES-GGCG-
T ss_pred             CCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----------CCCceeEecceeccc
Confidence            5568999999999999999999964 4  37999998 6799999999999987           568999987775422


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhh-CCCcEEEEEEEecCchHHHHHHHHHhc-CC
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALS-GPKTTILLGYEIRSTSVHEQMLQMWKS-NF  199 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l-~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f  199 (220)
                      ........+|.|+.--+    ..-..+..+.+.| ++||.+.+-.+.-..  .....+.+++ +|
T Consensus       106 ~~~~~~~~~DavfLDlp----~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQ--v~~~~~~L~~~gf  164 (247)
T PF08704_consen  106 FDEELESDFDAVFLDLP----DPWEAIPHAKRALKKPGGRICCFSPCIEQ--VQKTVEALREHGF  164 (247)
T ss_dssp             -STT-TTSEEEEEEESS----SGGGGHHHHHHHE-EEEEEEEEEESSHHH--HHHHHHHHHHTTE
T ss_pred             ccccccCcccEEEEeCC----CHHHHHHHHHHHHhcCCceEEEECCCHHH--HHHHHHHHHHCCC
Confidence            11112468999986543    3445667778888 788887765543222  3444555543 65

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.72  E-value=1e-07  Score=74.07  Aligned_cols=104  Identities=19%  Similarity=0.241  Sum_probs=71.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCe-----------EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCN-----------VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL  130 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~-----------v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~l  130 (220)
                      .++..+||--||+|.+.+.+|..+..           +++.|+ +++++.++.|++..+.           ...+.+...
T Consensus        27 ~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~-----------~~~i~~~~~   95 (179)
T PF01170_consen   27 RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV-----------EDYIDFIQW   95 (179)
T ss_dssp             -TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------------CGGEEEEE-
T ss_pred             CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----------CCceEEEec
Confidence            36779999999999999999876443           679998 6799999999998776           356777776


Q ss_pred             eeCCCCCccccCCCccEEEEecCCCCC---------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          131 DWGNEDHIKAVAPPFDYIIGTDVYAEH---------LLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       131 dw~~~~~~~~~~~~fD~V~~~d~y~~~---------~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      |..+.   +...+.+|+|+++++|...         .+..+++.+.+.+++ ..+++...
T Consensus        96 D~~~l---~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~  151 (179)
T PF01170_consen   96 DAREL---PLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTS  151 (179)
T ss_dssp             -GGGG---GGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEES
T ss_pred             chhhc---ccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEEC
Confidence            55443   3345789999999996543         245567777777888 44444443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.70  E-value=1.2e-07  Score=73.87  Aligned_cols=119  Identities=22%  Similarity=0.338  Sum_probs=80.0

Q ss_pred             cEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           67 RVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      +++|+|+|.|++|+.+|-.-  .+++.+|- ..=+..++.-+..-++            .++++......+    .....
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L------------~nv~v~~~R~E~----~~~~~  114 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL------------SNVEVINGRAEE----PEYRE  114 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-------------SSEEEEES-HHH----TTTTT
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC------------CCEEEEEeeecc----cccCC
Confidence            79999999999999999764  46999996 4455666666665555            468888855544    22467


Q ss_pred             CccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-hHHHHHHHHHhc-CCeEEEee
Q 027659          144 PFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQMWKS-NFNVKLVP  205 (220)
Q Consensus       144 ~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-~~~~~f~~~~~~-~f~v~~v~  205 (220)
                      .||+|++-.+   ..+..++..+..+++++|.+++ ++.+.. +-.+.....++. +.+...++
T Consensus       115 ~fd~v~aRAv---~~l~~l~~~~~~~l~~~G~~l~-~KG~~~~~El~~~~~~~~~~~~~~~~v~  174 (184)
T PF02527_consen  115 SFDVVTARAV---APLDKLLELARPLLKPGGRLLA-YKGPDAEEELEEAKKAWKKLGLKVLSVP  174 (184)
T ss_dssp             -EEEEEEESS---SSHHHHHHHHGGGEEEEEEEEE-EESS--HHHHHTHHHHHHCCCEEEEEEE
T ss_pred             CccEEEeehh---cCHHHHHHHHHHhcCCCCEEEE-EcCCChHHHHHHHHhHHHHhCCEEeeec
Confidence            9999999887   5578899999999999998765 443332 222333344443 45555444

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.67  E-value=2.1e-07  Score=75.21  Aligned_cols=94  Identities=24%  Similarity=0.201  Sum_probs=72.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+..++||||+|.|-++..++..-.+|++|+.+. |...+++    -+.             + .....+|.+.      
T Consensus        93 ~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg~-------------~-vl~~~~w~~~------  148 (265)
T PF05219_consen   93 WKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KGF-------------T-VLDIDDWQQT------  148 (265)
T ss_pred             ccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CCC-------------e-EEehhhhhcc------
Confidence            3567899999999999999999888899999854 5444432    221             1 2233446532      


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      +.+||+|.|-.+ =....+..|++.+++.|+|+|.++++.
T Consensus       149 ~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  149 DFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             CCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            468999999998 556678899999999999999999884

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK01581 speE spermidine synthase; Validated

Probab=98.67  E-value=2.7e-07  Score=78.48  Aligned_cols=106  Identities=20%  Similarity=0.125  Sum_probs=71.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHH---HhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVE---WNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~---~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++||+||||+|.....+++..  .+|+++|+ +++++.++..-.   .|...        -...++++...|..+.  
T Consensus       150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~--------~~DpRV~vvi~Da~~f--  219 (374)
T PRK01581        150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSA--------FFDNRVNVHVCDAKEF--  219 (374)
T ss_pred             CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcccc--------CCCCceEEEECcHHHH--
Confidence            45699999999999888777764  47999999 669999986211   11110        0135777777554332  


Q ss_pred             ccccCCCccEEEEecC-CCCC----C-hHHHHHHHHHhhCCCcEEEEE
Q 027659          138 IKAVAPPFDYIIGTDV-YAEH----L-LEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~-y~~~----~-~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      +....++||+|++.-+ -...    . -..+++.+.+.|+|||++++-
T Consensus       220 L~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        220 LSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             HHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            1223568999997643 2111    1 267889999999999997764

>PLN02366 spermidine synthase

Probab=98.67  E-value=3e-07  Score=77.20  Aligned_cols=127  Identities=14%  Similarity=0.062  Sum_probs=82.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++||+||||.|.....+++..  .+|+++|+ +++++.+++........        -...++++...|-...-. ..
T Consensus        91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~--------~~dpRv~vi~~Da~~~l~-~~  161 (308)
T PLN02366         91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVG--------FDDPRVNLHIGDGVEFLK-NA  161 (308)
T ss_pred             CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccc--------cCCCceEEEEChHHHHHh-hc
Confidence            46799999999999999888763  36999999 56999999877542110        013578888755322111 01


Q ss_pred             cCCCccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEE--ecCchHHHHHHHHHhcCC
Q 027659          141 VAPPFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNF  199 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~--~r~~~~~~~f~~~~~~~f  199 (220)
                      ..++||+|++.-.  ....   .-..+++.+.++|+|+|++++-..  ......+..+.+.+++.|
T Consensus       162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~~~F  227 (308)
T PLN02366        162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICRETF  227 (308)
T ss_pred             cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHHHHC
Confidence            2468999997432  2111   135788999999999999865221  222334556666677667

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.66  E-value=2.4e-07  Score=75.82  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=56.8

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||+|||+|.++..+++.+.+|+++|. +++++.++.+...              ..++.+...|.....    
T Consensus        27 ~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~--------------~~~v~v~~~D~~~~~----   88 (253)
T TIGR00755        27 VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL--------------YERLEVIEGDALKVD----   88 (253)
T ss_pred             CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc--------------CCcEEEEECchhcCC----
Confidence            346789999999999999999999888999998 5688888876532              136777776654432    


Q ss_pred             cCCCcc---EEEEecCCCC
Q 027659          141 VAPPFD---YIIGTDVYAE  156 (220)
Q Consensus       141 ~~~~fD---~V~~~d~y~~  156 (220)
                       ...||   +|+++.+|+.
T Consensus        89 -~~~~d~~~~vvsNlPy~i  106 (253)
T TIGR00755        89 -LPDFPKQLKVVSNLPYNI  106 (253)
T ss_pred             -hhHcCCcceEEEcCChhh
Confidence             11455   8888877654

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.65  E-value=4.5e-08  Score=74.42  Aligned_cols=76  Identities=21%  Similarity=0.067  Sum_probs=55.4

Q ss_pred             cEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCc
Q 027659           67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF  145 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~f  145 (220)
                      .|+|+.||.|-.++.+|+.+.+|+++|+ +.-++.++.|++..+.           ..+|.+...||.+..........|
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv-----------~~~I~~i~gD~~~~~~~~~~~~~~   70 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGV-----------ADNIDFICGDFFELLKRLKSNKIF   70 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT------------GGGEEEEES-HHHHGGGB------
T ss_pred             EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCCHHHHHhhccccccc
Confidence            6999999999999999999999999999 6799999999999986           468999999987643221112228


Q ss_pred             cEEEEecC
Q 027659          146 DYIIGTDV  153 (220)
Q Consensus       146 D~V~~~d~  153 (220)
                      |+|+++|+
T Consensus        71 D~vFlSPP   78 (163)
T PF09445_consen   71 DVVFLSPP   78 (163)
T ss_dssp             SEEEE---
T ss_pred             cEEEECCC
Confidence            99999997

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.63  E-value=2e-07  Score=73.44  Aligned_cols=123  Identities=15%  Similarity=0.118  Sum_probs=83.9

Q ss_pred             CcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ..+||||||.|-..+.+|....  .++|+|. ...+..+.+.+...++            .|+.+...|....-..-..+
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------------~Nv~~~~~da~~~l~~~~~~   86 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL------------KNVRFLRGDARELLRRLFPP   86 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT------------SSEEEEES-CTTHHHHHSTT
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc------------cceEEEEccHHHHHhhcccC
Confidence            3899999999999999998754  5999998 6678877777777665            68999886654422111235


Q ss_pred             CCccEEEEecC--CCCC-------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc---CCeEE
Q 027659          143 PPFDYIIGTDV--YAEH-------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS---NFNVK  202 (220)
Q Consensus       143 ~~fD~V~~~d~--y~~~-------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~---~f~v~  202 (220)
                      +.+|-|..+=+  +...       .-+.++..+.++|+|||.+++.....  ...+..++.+.+   .|+..
T Consensus        87 ~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~--~y~~~~~~~~~~~~~~f~~~  156 (195)
T PF02390_consen   87 GSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVE--EYAEWMLEQFEESHPGFENI  156 (195)
T ss_dssp             TSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-H--HHHHHHHHHHHHHSTTEEEE
T ss_pred             CchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHhcCcCeEEc
Confidence            78998877665  4332       24789999999999999999865442  234444555544   45544

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.62  E-value=3.5e-07  Score=72.55  Aligned_cols=126  Identities=16%  Similarity=0.141  Sum_probs=82.7

Q ss_pred             CCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +++++|||+|.|++|+.+|-.  ..+|+.+|- ..=+..++.-...-++            .|+++......+...    
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L------------~nv~i~~~RaE~~~~----  131 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL------------ENVEIVHGRAEEFGQ----  131 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC------------CCeEEehhhHhhccc----
Confidence            689999999999999999854  345999996 4455566655555544            467887744433321    


Q ss_pred             CCC-ccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEEeeCCCC
Q 027659          142 APP-FDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVPKAKE  209 (220)
Q Consensus       142 ~~~-fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~v~~~~~  209 (220)
                      ..+ ||+|++-.+   ..+..++..+..++++||.++...-....+.....-..+ ..++.++.+.....
T Consensus       132 ~~~~~D~vtsRAv---a~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~~~~~~~~~~~  198 (215)
T COG0357         132 EKKQYDVVTSRAV---ASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGGQVEKVFSLTV  198 (215)
T ss_pred             ccccCcEEEeehc---cchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcCcEEEEEEeec
Confidence            123 999999887   557788899999999988865433222233333443333 34677766654433

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.56  E-value=2.9e-06  Score=79.01  Aligned_cols=151  Identities=15%  Similarity=0.077  Sum_probs=95.8

Q ss_pred             eEEEeecCeEEEEEeCCCCccc---ccc----ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh
Q 027659           13 VINLEVLGHQLQFSQDPNSKHL---GTT----VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (220)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~---g~~----~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~   85 (220)
                      .+.+.+.....++.-+.++...   |.+    .-|-...||.-|.....      ....+..++|-+||+|.+.+.+|..
T Consensus       138 ~i~~~~~~~~~~l~ld~sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~------w~~~~~~l~DP~CGSGTilIEAa~~  211 (702)
T PRK11783        138 RINARLNKGEATISLDLSGESLHQRGYRQATGEAPLKENLAAAILLRSG------WPQEGTPLLDPMCGSGTLLIEAAMM  211 (702)
T ss_pred             EEEEEEeCCEEEEEEECCCCchhhccCccCCCCCCCcHHHHHHHHHHcC------CCCCCCeEEccCCCccHHHHHHHHH
Confidence            3455566666777666543322   111    22234466665554321      1124678999999999999998863


Q ss_pred             C--------------------------------------------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           86 G--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        86 g--------------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      +                                            .+++++|+ +++++.++.|+..++.          
T Consensus       212 ~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~----------  281 (702)
T PRK11783        212 AADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGV----------  281 (702)
T ss_pred             HhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCC----------
Confidence            1                                            25899998 6799999999999987          


Q ss_pred             CCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC-----hHHHHHHHHHhhC---CCcEEEEEEE
Q 027659          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL-----LEPLLQTIFALSG---PKTTILLGYE  181 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~-----~~~l~~~l~~~l~---~~g~~~i~~~  181 (220)
                       ...+.+...|+.+.... ...+.||+|++|++|....     ...+-+.+...++   +|+.+++...
T Consensus       282 -~~~i~~~~~D~~~~~~~-~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~  348 (702)
T PRK11783        282 -AELITFEVKDVADLKNP-LPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS  348 (702)
T ss_pred             -CcceEEEeCChhhcccc-cccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence             45688888777654321 1235799999999965432     2333333333333   7777776554

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.55  E-value=7.7e-07  Score=75.23  Aligned_cols=104  Identities=21%  Similarity=0.155  Sum_probs=78.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .|.+|||+-||.|..++.+|+.|+. |+++|+ |++++.+++|+++|+.           ...+.....|-....   ..
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v-----------~~~v~~i~gD~rev~---~~  253 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKV-----------EGRVEPILGDAREVA---PE  253 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCc-----------cceeeEEeccHHHhh---hc
Confidence            5889999999999999999999986 999999 7899999999999988           345777775544332   12


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      ...||-|+.+-+ ..    ..++....++++++|.+.+-...+..
T Consensus       254 ~~~aDrIim~~p~~a----~~fl~~A~~~~k~~g~iHyy~~~~e~  294 (341)
T COG2520         254 LGVADRIIMGLPKSA----HEFLPLALELLKDGGIIHYYEFVPED  294 (341)
T ss_pred             cccCCEEEeCCCCcc----hhhHHHHHHHhhcCcEEEEEeccchh
Confidence            268999998877 33    34445555567778877664444443

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=8.2e-07  Score=77.68  Aligned_cols=125  Identities=12%  Similarity=0.103  Sum_probs=94.8

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      ++.+|-.++.++.       ....++.+||+-||||+.|+++|+.-.+|+++++ +++++-|+.|+..|+.         
T Consensus       367 ~aevLys~i~e~~-------~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi---------  430 (534)
T KOG2187|consen  367 AAEVLYSTIGEWA-------GLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI---------  430 (534)
T ss_pred             HHHHHHHHHHHHh-------CCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc---------
Confidence            5788888888874       4556789999999999999999998889999998 7899999999999997         


Q ss_pred             CCCCceEEEEeeeCCCCC-cc-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          120 DLLGSIQAVELDWGNEDH-IK-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       120 ~~~~~v~~~~ldw~~~~~-~~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                         .|+++++..-.+.-. +. .....-++|...|+-.......+++.+...-++.-.+|+++..+.
T Consensus       431 ---sNa~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t  494 (534)
T KOG2187|consen  431 ---SNATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHT  494 (534)
T ss_pred             ---cceeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHH
Confidence               578888842222211 10 111244566666663345567888888888889999999988765

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.51  E-value=1.2e-06  Score=68.79  Aligned_cols=105  Identities=17%  Similarity=0.112  Sum_probs=72.1

Q ss_pred             cEEEeCCcccHHHHHHHHhCCe--EEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-----Cc
Q 027659           67 RVIELGAGCGVAGFGMALLGCN--VITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-----HI  138 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~g~~--v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-----~~  138 (220)
                      +|||||||||--+..+|+.-..  -.-+|.+ +.+..++..+...+..+           -.....+|.....     ..
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N-----------v~~P~~lDv~~~~w~~~~~~   96 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN-----------VRPPLALDVSAPPWPWELPA   96 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc-----------cCCCeEeecCCCCCcccccc
Confidence            6999999999999999987544  5578984 46677777776655421           1122234433331     11


Q ss_pred             cccCCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          139 KAVAPPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +.....||.|++..+ +-  .+..+.|++...++|++||.+++-.+-
T Consensus        97 ~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF  143 (204)
T PF06080_consen   97 PLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPF  143 (204)
T ss_pred             ccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence            123568999999988 43  345688999999999999998876543

The function of this family is unknown.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.51  E-value=7.5e-06  Score=65.66  Aligned_cols=150  Identities=17%  Similarity=0.209  Sum_probs=92.4

Q ss_pred             ccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecchh-hHHHHHHHHHHh
Q 027659           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIE-VLPLLKRNVEWN  108 (220)
Q Consensus        32 ~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~-~l~~~~~n~~~n  108 (220)
                      ..-+...++++..=+.|+.++        ..+.|++||=||=+ =+.|+++|..  ..+|+.+|+.+ .++.+++.++..
T Consensus        20 ~DQ~~~T~eT~~~Ra~~~~~~--------gdL~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~   90 (243)
T PF01861_consen   20 LDQGYATPETTLRRAALMAER--------GDLEGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEE   90 (243)
T ss_dssp             GT---B-HHHHHHHHHHHHHT--------T-STT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHhc--------CcccCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc
Confidence            445667778888888899877        67899999999955 4777877754  45799999965 999999999988


Q ss_pred             hhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCC-CcEEEEEEEecCch-
Q 027659          109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGP-KTTILLGYEIRSTS-  186 (220)
Q Consensus       109 ~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~-~g~~~i~~~~r~~~-  186 (220)
                      +.             +|++...|..++-+. ...++||+++..|+|-.+-+..++.-..+.|+. |+..|+++..+... 
T Consensus        91 gl-------------~i~~~~~DlR~~LP~-~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~  156 (243)
T PF01861_consen   91 GL-------------PIEAVHYDLRDPLPE-ELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEASP  156 (243)
T ss_dssp             T---------------EEEE---TTS---T-TTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT--H
T ss_pred             CC-------------ceEEEEecccccCCH-HHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcCcH
Confidence            76             488888777665321 235799999988888888888888888888875 45888988877632 


Q ss_pred             -HHHHHHHHH-hcCCeEEEe
Q 027659          187 -VHEQMLQMW-KSNFNVKLV  204 (220)
Q Consensus       187 -~~~~f~~~~-~~~f~v~~v  204 (220)
                       ....+.+.+ ..+|.++.+
T Consensus       157 ~~~~~~Q~~l~~~gl~i~di  176 (243)
T PF01861_consen  157 DKWLEVQRFLLEMGLVITDI  176 (243)
T ss_dssp             HHHHHHHHHHHTS--EEEEE
T ss_pred             HHHHHHHHHHHHCCcCHHHH
Confidence             233444444 457877654

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.50  E-value=1.1e-06  Score=66.27  Aligned_cols=119  Identities=14%  Similarity=0.169  Sum_probs=81.8

Q ss_pred             cccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC---eEEEecc-hhhHHHHHHHHHHhhhhh
Q 027659           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRI  112 (220)
Q Consensus        37 ~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (220)
                      .+=|+|..+|+-+.+..       +.-.|.-|||+|.|||.++-++...|.   .++++++ ++.+..+.+.        
T Consensus        28 aI~PsSs~lA~~M~s~I-------~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~--------   92 (194)
T COG3963          28 AILPSSSILARKMASVI-------DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL--------   92 (194)
T ss_pred             eecCCcHHHHHHHHhcc-------CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh--------
Confidence            45577888888777653       344788999999999999999998875   4999998 6766666543        


Q ss_pred             ccCCCCCCCCCceEEEEeeeCCCC-Cc-cccCCCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          113 SQMNPGSDLLGSIQAVELDWGNED-HI-KAVAPPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       113 ~~~~~~~~~~~~v~~~~ldw~~~~-~~-~~~~~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                               ...+.+...|.-+.. .+ ......||.|+|+-+   +-...--++++.+...+.+||.++-.
T Consensus        93 ---------~p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqf  155 (194)
T COG3963          93 ---------YPGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQF  155 (194)
T ss_pred             ---------CCCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEE
Confidence                     223344443332222 01 123568999999887   33344567888888888888877643

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.48  E-value=9.7e-06  Score=69.21  Aligned_cols=146  Identities=14%  Similarity=0.091  Sum_probs=99.6

Q ss_pred             EEEeecCeEEEEEeCCCCccccccccch-------HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC
Q 027659           14 INLEVLGHQLQFSQDPNSKHLGTTVWDA-------SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG   86 (220)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~g~~~W~~-------s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g   86 (220)
                      |.+.+.+..+++--+.++.+.-.+=|+-       -..||.-|....       ....+..++|-=||+|.+.+.+|..+
T Consensus       141 i~v~l~~~~~~l~iDttG~sLhkRGyR~~~g~ApLketLAaAil~la-------gw~~~~pl~DPmCGSGTi~IEAAl~~  213 (381)
T COG0116         141 INVELDKDTATLGIDTTGDSLHKRGYRVYDGPAPLKETLAAAILLLA-------GWKPDEPLLDPMCGSGTILIEAALIA  213 (381)
T ss_pred             EEEEEEcCEEEEEEeCCCcchhhccccccCCCCCchHHHHHHHHHHc-------CCCCCCccccCCCCccHHHHHHHHhc
Confidence            3455667777777666554332223322       234444444331       23344689999999999999999876


Q ss_pred             C-----------------------------------------eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 027659           87 C-----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (220)
Q Consensus        87 ~-----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (220)
                      .                                         .++++|+ +.+++.|+.|++..++           .+.
T Consensus       214 ~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv-----------~d~  282 (381)
T COG0116         214 ANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGV-----------GDL  282 (381)
T ss_pred             cccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCC-----------Cce
Confidence            4                                         2779999 6799999999999988           678


Q ss_pred             eEEEEeeeCCCCCccccCCCccEEEEecCCCCC---------ChHHHHHHHHHhhCCCcEEEEEE
Q 027659          125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH---------LLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       125 v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~---------~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      |++.+.|.....+.   .+.+|+||+|++|...         .+..+.+++++.++.-+..+++.
T Consensus       283 I~f~~~d~~~l~~~---~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt  344 (381)
T COG0116         283 IEFKQADATDLKEP---LEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT  344 (381)
T ss_pred             EEEEEcchhhCCCC---CCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence            99999777665421   2689999999996532         24456666667777666666544

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.46  E-value=9.7e-07  Score=74.87  Aligned_cols=136  Identities=17%  Similarity=0.102  Sum_probs=78.6

Q ss_pred             ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccC
Q 027659           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (220)
Q Consensus        38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (220)
                      =|=-+.++..|+....       ...++.+|||||||-|---.-....+. .++++|+ .++|+.+++............
T Consensus        43 NwvKs~LI~~~~~~~~-------~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~  115 (331)
T PF03291_consen   43 NWVKSVLIQKYAKKVK-------QNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSK  115 (331)
T ss_dssp             HHHHHHHHHHHCHCCC-------CTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-H
T ss_pred             HHHHHHHHHHHHHhhh-------ccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccc
Confidence            3556777777775331       222778999999998765555555554 5999999 569999988774322110000


Q ss_pred             CCCCCCCCceEEEEeeeCCCC---CccccCCCccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          116 NPGSDLLGSIQAVELDWGNED---HIKAVAPPFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       116 ~~~~~~~~~v~~~~ldw~~~~---~~~~~~~~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ..  ...-...+...|-....   .......+||+|-+--.  |.-+   ....+++.+..+|+|||.++.+.+.
T Consensus       116 ~~--~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d  188 (331)
T PF03291_consen  116 QY--RFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD  188 (331)
T ss_dssp             TS--EECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             cc--cccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence            00  00012233332211110   01112359999998776  5433   3567999999999999999998875

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.46  E-value=4.1e-06  Score=65.77  Aligned_cols=127  Identities=13%  Similarity=0.136  Sum_probs=77.6

Q ss_pred             cccchHHH--HHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhc
Q 027659           37 TVWDASVV--FVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS  113 (220)
Q Consensus        37 ~~W~~s~~--l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~  113 (220)
                      ..||.-++  +.+||.+.          ..+..|-|+|||-+.++..+. .+.+|...|+ +.           |     
T Consensus        53 ~~WP~nPvd~iI~~l~~~----------~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-----------n-----  105 (219)
T PF05148_consen   53 KKWPVNPVDVIIEWLKKR----------PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-----------N-----  105 (219)
T ss_dssp             CTSSS-HHHHHHHHHCTS-----------TTS-EEEES-TT-HHHHH---S---EEEEESS-S-----------S-----
T ss_pred             hcCCCCcHHHHHHHHHhc----------CCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-----------C-----
Confidence            47888764  55677543          245689999999988874432 3456889996 22           1     


Q ss_pred             cCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHH
Q 027659          114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ  193 (220)
Q Consensus       114 ~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~  193 (220)
                               +.  +...|.   ...|..++..|++|.+-.-....+..++....++|++||.++|+.-.-.....+.|.+
T Consensus       106 ---------~~--Vtacdi---a~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~  171 (219)
T PF05148_consen  106 ---------PR--VTACDI---ANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIK  171 (219)
T ss_dssp             ---------TT--EEES-T---TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHH
T ss_pred             ---------CC--EEEecC---ccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHH
Confidence                     12  333333   3344467899999988655567799999999999999999999987644445688988


Q ss_pred             HHhc-CCeEEEe
Q 027659          194 MWKS-NFNVKLV  204 (220)
Q Consensus       194 ~~~~-~f~v~~v  204 (220)
                      .++. +|++..-
T Consensus       172 ~~~~~GF~~~~~  183 (219)
T PF05148_consen  172 ALKKLGFKLKSK  183 (219)
T ss_dssp             HHHCTTEEEEEE
T ss_pred             HHHHCCCeEEec
Confidence            8865 8887653

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.44  E-value=1.8e-06  Score=69.42  Aligned_cols=106  Identities=11%  Similarity=0.003  Sum_probs=78.1

Q ss_pred             CcEEEeCCcccHHHHHHHHhCCe--EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ..+||||||.|-.-+.+|+...+  ++|+++ ...+..+...+...++            .|+.+.+.|.......-..+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l------------~Nlri~~~DA~~~l~~~~~~  117 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------------KNLRLLCGDAVEVLDYLIPD  117 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCC------------CcEEEEcCCHHHHHHhcCCC
Confidence            57999999999999999998774  999997 5666666666666554            37888886554432222234


Q ss_pred             CCccEEEEecC--CCCCC-------hHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          143 PPFDYIIGTDV--YAEHL-------LEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       143 ~~fD~V~~~d~--y~~~~-------~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ++.|-|..+=+  ++..-       .+.+++.+.+.|+|||.+.++....
T Consensus       118 ~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~  167 (227)
T COG0220         118 GSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNE  167 (227)
T ss_pred             CCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCH
Confidence            58888877655  44332       4789999999999999999977553

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=2.1e-06  Score=67.12  Aligned_cols=110  Identities=19%  Similarity=0.232  Sum_probs=71.0

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-CCe---EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-GCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g~~---v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ...+|.+.||+|+|+|.++-+++.+ |+.   ++++|. ++.++..+.|+......-..  ++.-...++.+...|   -
T Consensus        79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~--~~~~~~~~l~ivvGD---g  153 (237)
T KOG1661|consen   79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSES--SSKLKRGELSIVVGD---G  153 (237)
T ss_pred             hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchh--hhhhccCceEEEeCC---c
Confidence            3568999999999999999999954 443   489996 89999999999875421000  000124456666533   3


Q ss_pred             CCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          136 DHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       136 ~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ........+||.|.+..-     ...+.+.+-.-|+++|.+++-.
T Consensus       154 r~g~~e~a~YDaIhvGAa-----a~~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  154 RKGYAEQAPYDAIHVGAA-----ASELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             cccCCccCCcceEEEccC-----ccccHHHHHHhhccCCeEEEee
Confidence            323334678999976422     2233344444677888877643

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.42  E-value=2.3e-06  Score=65.17  Aligned_cols=83  Identities=12%  Similarity=-0.013  Sum_probs=61.2

Q ss_pred             EEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHH
Q 027659           90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIF  167 (220)
Q Consensus        90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~  167 (220)
                      +++|. ++|++.++++......         ....++++...|.   ..++..++.||+|+++.+ .+..+...+++.+.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~---------~~~~~i~~~~~d~---~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~   68 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKAR---------SCYKCIEWIEGDA---IDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMY   68 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccc---------cCCCceEEEEech---hhCCCCCCCeeEEEecchhhcCCCHHHHHHHHH
Confidence            47898 5699999876543221         0023678888554   344455678999999988 77778999999999


Q ss_pred             HhhCCCcEEEEEEEecC
Q 027659          168 ALSGPKTTILLGYEIRS  184 (220)
Q Consensus       168 ~~l~~~g~~~i~~~~r~  184 (220)
                      ++|+|||.+++..-...
T Consensus        69 rvLkpGG~l~i~d~~~~   85 (160)
T PLN02232         69 RVLKPGSRVSILDFNKS   85 (160)
T ss_pred             HHcCcCeEEEEEECCCC
Confidence            99999999998765443

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.41  E-value=7.7e-06  Score=72.46  Aligned_cols=125  Identities=16%  Similarity=0.154  Sum_probs=82.3

Q ss_pred             ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhc
Q 027659           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRIS  113 (220)
Q Consensus        38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~  113 (220)
                      .-++|++.+..|..         ...+|.+|||++||.|-=+..+|.. +  ..|++.|+ +.-++.+++|++..+.   
T Consensus        96 Qd~sS~l~~~~L~~---------~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~---  163 (470)
T PRK11933         96 QEASSMLPVAALFA---------DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV---  163 (470)
T ss_pred             ECHHHHHHHHHhcc---------CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---
Confidence            33456665655532         1236789999999999988888864 2  36999998 5688999999998765   


Q ss_pred             cCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEE----ecC-CCCCC------------------hHHHHHHHHHhh
Q 027659          114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIG----TDV-YAEHL------------------LEPLLQTIFALS  170 (220)
Q Consensus       114 ~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~----~d~-y~~~~------------------~~~l~~~l~~~l  170 (220)
                               .++.+...|-.....  .....||.|+.    |.. -....                  -..++....++|
T Consensus       164 ---------~nv~v~~~D~~~~~~--~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~L  232 (470)
T PRK11933        164 ---------SNVALTHFDGRVFGA--ALPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHAL  232 (470)
T ss_pred             ---------CeEEEEeCchhhhhh--hchhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHc
Confidence                     356666544322111  12457999994    322 11111                  145777778889


Q ss_pred             CCCcEEEEEEEecCc
Q 027659          171 GPKTTILLGYEIRST  185 (220)
Q Consensus       171 ~~~g~~~i~~~~r~~  185 (220)
                      +|||.++.+...-++
T Consensus       233 kpGG~LVYSTCT~~~  247 (470)
T PRK11933        233 KPGGTLVYSTCTLNR  247 (470)
T ss_pred             CCCcEEEEECCCCCH
Confidence            999998777655443

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.41  E-value=2.3e-06  Score=71.09  Aligned_cols=81  Identities=22%  Similarity=0.265  Sum_probs=48.9

Q ss_pred             CCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeeeCCC--CCc
Q 027659           65 GKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNE--DHI  138 (220)
Q Consensus        65 ~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~ldw~~~--~~~  138 (220)
                      ..++||+|+|. .+..+..++ .|-++++||+ +.+++.|++|++.| .+           ..+|++....=...  ..+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L-----------~~~I~l~~~~~~~~i~~~i  171 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNL-----------ESRIELRKQKNPDNIFDGI  171 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T------------TTTEEEEE--ST-SSTTTS
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhcccc-----------ccceEEEEcCCccccchhh
Confidence            46899999998 566777765 4778999999 56999999999999 66           56787765321110  011


Q ss_pred             cccCCCccEEEEecC-CCC
Q 027659          139 KAVAPPFDYIIGTDV-YAE  156 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~  156 (220)
                      ....+.||+.+|+++ |..
T Consensus       172 ~~~~e~~dftmCNPPFy~s  190 (299)
T PF05971_consen  172 IQPNERFDFTMCNPPFYSS  190 (299)
T ss_dssp             TT--S-EEEEEE-----SS
T ss_pred             hcccceeeEEecCCccccC
Confidence            123468999999999 653

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.37  E-value=5e-06  Score=75.06  Aligned_cols=130  Identities=12%  Similarity=0.067  Sum_probs=79.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC----------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG----------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW  132 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g----------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw  132 (220)
                      .+.+|||.+||+|.+.+.++...          ..+++.|+ +.+++.++.|+...+.            ..+.+...+.
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~------------~~~~i~~~d~   98 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL------------LEINVINFNS   98 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC------------CCceeeeccc
Confidence            45689999999999998887532          24899999 5699999998876541            1122222221


Q ss_pred             CCCC--CccccCCCccEEEEecCCCCCC-----h------------------------------------------HHH-
Q 027659          133 GNED--HIKAVAPPFDYIIGTDVYAEHL-----L------------------------------------------EPL-  162 (220)
Q Consensus       133 ~~~~--~~~~~~~~fD~V~~~d~y~~~~-----~------------------------------------------~~l-  162 (220)
                      ....  ......+.||+|++||+|....     .                                          ..+ 
T Consensus        99 l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f  178 (524)
T TIGR02987        99 LSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVF  178 (524)
T ss_pred             ccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHH
Confidence            1110  0011235899999999944210     0                                          012 


Q ss_pred             HHHHHHhhCCCcEEEEEEEecCc--hHHHHHHHHHhcCCeEEEee
Q 027659          163 LQTIFALSGPKTTILLGYEIRST--SVHEQMLQMWKSNFNVKLVP  205 (220)
Q Consensus       163 ~~~l~~~l~~~g~~~i~~~~r~~--~~~~~f~~~~~~~f~v~~v~  205 (220)
                      +....++|+++|.+.+..+..--  .....|.+.+-+...+..|.
T Consensus       179 ~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~  223 (524)
T TIGR02987       179 EEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNNRLINCIQ  223 (524)
T ss_pred             HHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEE
Confidence            24456678999998887764221  22445666565556665543

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.33  E-value=6.2e-06  Score=69.44  Aligned_cols=129  Identities=17%  Similarity=0.156  Sum_probs=77.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHHH---------hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee
Q 027659           63 LKGKRVIELGAGCGVAGFGMAL---------LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW  132 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~---------~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw  132 (220)
                      ..+.+|+|-.||+|..-+.+..         ....++|.|+ +.++.+++.|+..++..          ..+......|.
T Consensus        45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~----------~~~~~i~~~d~  114 (311)
T PF02384_consen   45 KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGID----------NSNINIIQGDS  114 (311)
T ss_dssp             -TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHH----------CBGCEEEES-T
T ss_pred             cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccc----------ccccccccccc
Confidence            3667899999999998887775         2346999999 56999999998776652          12233444332


Q ss_pred             CCCCCccccCCCccEEEEecCCCCC-----C-----------------hHHHHHHHHHhhCCCcEEEEEEEecC---chH
Q 027659          133 GNEDHIKAVAPPFDYIIGTDVYAEH-----L-----------------LEPLLQTIFALSGPKTTILLGYEIRS---TSV  187 (220)
Q Consensus       133 ~~~~~~~~~~~~fD~V~~~d~y~~~-----~-----------------~~~l~~~l~~~l~~~g~~~i~~~~r~---~~~  187 (220)
                      -..... .....||+|+++++|...     .                 --.++..+.+.|+++|.+.+..+...   ...
T Consensus       115 l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~L~~~~~  193 (311)
T PF02384_consen  115 LENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGFLFSSSS  193 (311)
T ss_dssp             TTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHHHHGSTH
T ss_pred             cccccc-ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchhhhccch
Confidence            221111 024689999999993322     0                 11477777788999999877777532   122


Q ss_pred             HHHHHHHHhcCCeEE
Q 027659          188 HEQMLQMWKSNFNVK  202 (220)
Q Consensus       188 ~~~f~~~~~~~f~v~  202 (220)
                      ...+.+.+-+...++
T Consensus       194 ~~~iR~~ll~~~~i~  208 (311)
T PF02384_consen  194 EKKIRKYLLENGYIE  208 (311)
T ss_dssp             HHHHHHHHHHHEEEE
T ss_pred             HHHHHHHHHhhchhh
Confidence            345555554444443

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PLN02823 spermine synthase

Probab=98.31  E-value=7.5e-06  Score=69.62  Aligned_cols=127  Identities=16%  Similarity=0.165  Sum_probs=81.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++||.||+|.|..+..+++. + .+|+++|+ +++++.+++....+...        -...++++...|-...  +..
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~--------~~dprv~v~~~Da~~~--L~~  172 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREA--------FCDKRLELIINDARAE--LEK  172 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccccc--------ccCCceEEEEChhHHH--Hhh
Confidence            4568999999999999888775 3 36999999 67999999887654311        0135777776443222  122


Q ss_pred             cCCCccEEEEecC--C--CCC---ChHHHHH-HHHHhhCCCcEEEEEEEe----cCchHHHHHHHHHhcCCe
Q 027659          141 VAPPFDYIIGTDV--Y--AEH---LLEPLLQ-TIFALSGPKTTILLGYEI----RSTSVHEQMLQMWKSNFN  200 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y--~~~---~~~~l~~-~l~~~l~~~g~~~i~~~~----r~~~~~~~f~~~~~~~f~  200 (220)
                      ..++||+|+.--.  .  ...   .-..+++ .+++.|+|+|++++-...    ..........+.+++.|.
T Consensus       173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~vF~  244 (336)
T PLN02823        173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQVFK  244 (336)
T ss_pred             CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHHhCC
Confidence            3568999996522  1  111   1346777 889999999987654322    112234455556666553

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.29  E-value=4.9e-06  Score=69.02  Aligned_cols=114  Identities=18%  Similarity=0.166  Sum_probs=74.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCe-EEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC---Cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~---~~  138 (220)
                      ++..+++||||-|---+-.-+.|.. ++++|+.+ .++.++...+.-...-...      .-.+.+...|-....   ..
T Consensus       117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~------~f~a~f~~~Dc~~~~l~d~~  190 (389)
T KOG1975|consen  117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKF------IFTAVFIAADCFKERLMDLL  190 (389)
T ss_pred             cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcc------cceeEEEEeccchhHHHHhc
Confidence            5678999999998777777777764 99999976 8998887665332210000      012444443332211   11


Q ss_pred             cccCCCccEEEEecC--CCC---CChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          139 KAVAPPFDYIIGTDV--YAE---HLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~--y~~---~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ...+.+||+|-|--+  |.-   +...-+++.+..+|+|||.++-+.|..
T Consensus       191 e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPds  240 (389)
T KOG1975|consen  191 EFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDS  240 (389)
T ss_pred             cCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcH
Confidence            122344999988776  543   345678889999999999999887764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=2.9e-05  Score=63.36  Aligned_cols=79  Identities=15%  Similarity=0.120  Sum_probs=60.9

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++..|||+|+|.|.++..+++.+++|+++++ +.+++.+++....              ..++++...|.-....   
T Consensus        28 ~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--------------~~n~~vi~~DaLk~d~---   90 (259)
T COG0030          28 ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAP--------------YDNLTVINGDALKFDF---   90 (259)
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhccc--------------ccceEEEeCchhcCcc---
Confidence            334779999999999999999999999999999 5588888776541              3577888766544431   


Q ss_pred             cCC--CccEEEEecCCCCCC
Q 027659          141 VAP--PFDYIIGTDVYAEHL  158 (220)
Q Consensus       141 ~~~--~fD~V~~~d~y~~~~  158 (220)
                       ..  .++.|++|-+|+.+.
T Consensus        91 -~~l~~~~~vVaNlPY~Iss  109 (259)
T COG0030          91 -PSLAQPYKVVANLPYNISS  109 (259)
T ss_pred             -hhhcCCCEEEEcCCCcccH
Confidence             22  789999998877663

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.21  E-value=2.2e-05  Score=63.75  Aligned_cols=102  Identities=21%  Similarity=0.302  Sum_probs=72.2

Q ss_pred             cccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhh
Q 027659           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSR  111 (220)
Q Consensus        33 ~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~  111 (220)
                      +.|.++=.-..++..-+...        ....+..|||+|-|||.++..+...|++|++++. +.|+..+++.+..-.. 
T Consensus        35 d~GQHilkNp~v~~~I~~ka--------~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~-  105 (315)
T KOG0820|consen   35 DFGQHILKNPLVIDQIVEKA--------DLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPK-  105 (315)
T ss_pred             ccchhhhcCHHHHHHHHhcc--------CCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCc-
Confidence            44555555444444443332        4456778999999999999999999999999998 6688888776653321 


Q ss_pred             hccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC
Q 027659          112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL  158 (220)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~  158 (220)
                                ..+.++...|.-..+     ...||.++++-+|..+.
T Consensus       106 ----------~~kLqV~~gD~lK~d-----~P~fd~cVsNlPyqISS  137 (315)
T KOG0820|consen  106 ----------SGKLQVLHGDFLKTD-----LPRFDGCVSNLPYQISS  137 (315)
T ss_pred             ----------cceeeEEecccccCC-----CcccceeeccCCccccC
Confidence                      357788776654432     35799999987777654

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.21  E-value=2.2e-06  Score=67.92  Aligned_cols=152  Identities=18%  Similarity=0.238  Sum_probs=69.2

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHH-hCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..++...+|||||.|-+-+.+|. .+.+ ++|+++ ++..+.++.+.+..........   ....++.+...|..+....
T Consensus        40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g---~~~~~v~l~~gdfl~~~~~  116 (205)
T PF08123_consen   40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYG---KRPGKVELIHGDFLDPDFV  116 (205)
T ss_dssp             --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCT---B---EEEEECS-TTTHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhh---cccccceeeccCccccHhH
Confidence            34577999999999999887774 4655 999998 5566666554433221110000   0123566665444332211


Q ss_pred             cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHH---HHHHHHhcCCeEEEeeCCCCCcccC
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHE---QMLQMWKSNFNVKLVPKAKESTMWG  214 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~---~f~~~~~~~f~v~~v~~~~~~~~~~  214 (220)
                      ...-...|+|+++.. |.++....|. .+..-|++|..++ +.+.-.+...+   .-...+...+++++.......-.|.
T Consensus       117 ~~~~s~AdvVf~Nn~~F~~~l~~~L~-~~~~~lk~G~~II-s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~vSWt  194 (205)
T PF08123_consen  117 KDIWSDADVVFVNNTCFDPDLNLALA-ELLLELKPGARII-STKPFCPRRRSINSRNLDDIFAILKVEELEYVEGSVSWT  194 (205)
T ss_dssp             HHHGHC-SEEEE--TTT-HHHHHHHH-HHHTTS-TT-EEE-ESS-SS-TT----TTSTTSGGGCEEEEEEE--TT-BTTC
T ss_pred             hhhhcCCCEEEEeccccCHHHHHHHH-HHHhcCCCCCEEE-ECCCcCCCCcccchhhccChhhEEEEeecccCCCceeec
Confidence            111245799999999 8877666663 3334567776654 44333322111   0001112245666666555565565


Q ss_pred             CCCC
Q 027659          215 NPLG  218 (220)
Q Consensus       215 ~~~~  218 (220)
                      ...+
T Consensus       195 ~~~~  198 (205)
T PF08123_consen  195 SNSG  198 (205)
T ss_dssp             SSB-
T ss_pred             CCCc
Confidence            5444

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.19  E-value=2.2e-06  Score=65.87  Aligned_cols=96  Identities=20%  Similarity=0.203  Sum_probs=73.0

Q ss_pred             CCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      ...+.|||+|+|.+++.+|...-+|++++. |...+.+++|+..++.            .++++...|....+     -+
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~------------~n~evv~gDA~~y~-----fe   95 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD------------VNWEVVVGDARDYD-----FE   95 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC------------cceEEEeccccccc-----cc
Confidence            358999999999999999998667999998 6688899999987774            68888885544332     25


Q ss_pred             CccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEE
Q 027659          144 PFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       144 ~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      ..|+|+|--.   .-.+...+++..+.++|+..+.++
T Consensus        96 ~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076          96 NADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             ccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence            6799987654   444556677777777888766654

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.19  E-value=6.4e-06  Score=65.12  Aligned_cols=133  Identities=14%  Similarity=0.106  Sum_probs=79.4

Q ss_pred             CCCcEEEeCCcccHHHHHHH-HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ...+.||.|||.|.++--+. ....+|-++|. +..++.+++.+.....            ....+.+.-..+   ....
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~------------~v~~~~~~gLQ~---f~P~  119 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNP------------RVGEFYCVGLQD---FTPE  119 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGC------------CEEEEEES-GGG-------
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCC------------CcceEEecCHhh---ccCC
Confidence            45689999999999998664 55557999997 6688888765544221            123333322122   2122


Q ss_pred             CCCccEEEEecC--CC-CCChHHHHHHHHHhhCCCcEEEEEEEecCch-------------HHHHHHHHHhc-CCeEEEe
Q 027659          142 APPFDYIIGTDV--YA-EHLLEPLLQTIFALSGPKTTILLGYEIRSTS-------------VHEQMLQMWKS-NFNVKLV  204 (220)
Q Consensus       142 ~~~fD~V~~~d~--y~-~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~-------------~~~~f~~~~~~-~f~v~~v  204 (220)
                      ..+||+|++--|  |- +.++-.+++.++..|+|+|.+++=...-..+             ..+.|.+.+++ ++++..-
T Consensus       120 ~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~~  199 (218)
T PF05891_consen  120 EGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVKE  199 (218)
T ss_dssp             TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred             CCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEEe
Confidence            469999999998  43 4567888899999999999988754321111             24677777754 8877543


Q ss_pred             -eCCCCCc
Q 027659          205 -PKAKEST  211 (220)
Q Consensus       205 -~~~~~~~  211 (220)
                       .+..+++
T Consensus       200 ~~Q~~fP~  207 (218)
T PF05891_consen  200 EKQKGFPK  207 (218)
T ss_dssp             EE-TT--T
T ss_pred             ccccCCCc
Confidence             3444433

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.17  E-value=3.4e-06  Score=67.04  Aligned_cols=129  Identities=19%  Similarity=0.193  Sum_probs=88.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+|.+|||--.|.|..++.+++.|| .|+.++. +.++++++.|-=..++.          ...+++...|.-+.- -..
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~----------~~~i~iilGD~~e~V-~~~  201 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELF----------EIAIKIILGDAYEVV-KDF  201 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCcccc----------ccccEEecccHHHHH-hcC
Confidence            3789999999999999999999999 6998887 66888887664222220          224555553322211 122


Q ss_pred             cCCCccEEEEecC-CCCC---ChHHHHHHHHHhhCCCcEEEE--EEE---ecCchHHHHHHHHHhc-CCeEE
Q 027659          141 VAPPFDYIIGTDV-YAEH---LLEPLLQTIFALSGPKTTILL--GYE---IRSTSVHEQMLQMWKS-NFNVK  202 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~---~~~~l~~~l~~~l~~~g~~~i--~~~---~r~~~~~~~f~~~~~~-~f~v~  202 (220)
                      .+++||+|+--++ +...   .-+.|-+.+.++|+|||.++-  ..+   -|..+......+.+.+ +|.+.
T Consensus       202 ~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vGF~~v  273 (287)
T COG2521         202 DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVGFEVV  273 (287)
T ss_pred             CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcCceee
Confidence            4678999999888 7644   346788999999999998763  222   2333455666777765 88743

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.15  E-value=2.8e-05  Score=62.78  Aligned_cols=125  Identities=13%  Similarity=0.132  Sum_probs=83.4

Q ss_pred             ccchHH--HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccC
Q 027659           38 VWDASV--VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQM  115 (220)
Q Consensus        38 ~W~~s~--~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~  115 (220)
                      -||--+  ++.++|...          .....|-|+|||-+-++.   ..-.+|...|+-.          .        
T Consensus       162 kWP~nPld~ii~~ik~r----------~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------~--------  210 (325)
T KOG3045|consen  162 KWPENPLDVIIRKIKRR----------PKNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------V--------  210 (325)
T ss_pred             hCCCChHHHHHHHHHhC----------cCceEEEecccchhhhhh---ccccceeeeeeec----------C--------
Confidence            566544  355566543          245689999999875544   3334688888521          0        


Q ss_pred             CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH
Q 027659          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  195 (220)
Q Consensus       116 ~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~  195 (220)
                              +-++...|..+   .|..+++.|+++.+-.....++..+++...++|++||.+||+...-.......|.+.+
T Consensus       211 --------~~~V~~cDm~~---vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~SRf~dv~~f~r~l  279 (325)
T KOG3045|consen  211 --------NERVIACDMRN---VPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVKSRFSDVKGFVRAL  279 (325)
T ss_pred             --------CCceeeccccC---CcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehhhhcccHHHHHHHH
Confidence                    11334444433   4446789999998755556679999999999999999999997654433356688777


Q ss_pred             h-cCCeEEEe
Q 027659          196 K-SNFNVKLV  204 (220)
Q Consensus       196 ~-~~f~v~~v  204 (220)
                      . -+|.+...
T Consensus       280 ~~lGF~~~~~  289 (325)
T KOG3045|consen  280 TKLGFDVKHK  289 (325)
T ss_pred             HHcCCeeeeh
Confidence            4 48877543

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.13  E-value=8.1e-06  Score=71.59  Aligned_cols=124  Identities=13%  Similarity=0.084  Sum_probs=76.4

Q ss_pred             cccccchHHHHHHHHhhccccCCCCCCCCCC---CcEEEeCCcccHHHHHHHHhCCeEEEe---cchh-hHHHHHHHHHH
Q 027659           35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKG---KRVIELGAGCGVAGFGMALLGCNVITT---DQIE-VLPLLKRNVEW  107 (220)
Q Consensus        35 g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~---~~vLELGcG~G~~~l~la~~g~~v~~~---D~~~-~l~~~~~n~~~  107 (220)
                      |..-..++....++|.+-.      +....+   ..+||+|||+|..|..+..++..+..+   |..+ .++.+.+.   
T Consensus        91 gt~F~~Ga~~Yid~i~~~~------~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR---  161 (506)
T PF03141_consen   91 GTMFPHGADHYIDQIAEMI------PLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER---  161 (506)
T ss_pred             CccccCCHHHHHHHHHHHh------hccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc---
Confidence            3344446766677776654      121122   369999999999999999887653332   3222 23333211   


Q ss_pred             hhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          108 NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       108 n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                       ++.           .-+.+     .....++.+.+.||+|-|+.|  -+...-.-++-.+.++|+|||.++++.+.-+
T Consensus       162 -Gvp-----------a~~~~-----~~s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  162 -GVP-----------AMIGV-----LGSQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             -Ccc-----------hhhhh-----hccccccCCccchhhhhcccccccchhcccceeehhhhhhccCceEEecCCccc
Confidence             110           00111     112346677899999999999  3333335688889999999999999987644

; GO: 0008168 methyltransferase activity

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.12  E-value=3.5e-05  Score=61.20  Aligned_cols=106  Identities=16%  Similarity=0.154  Sum_probs=76.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-  136 (220)
                      ....+++||||.=||.-++..|..   +.+|++.|+ .++.+...+-.+..+.           ..+|++....-.+.- 
T Consensus        71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----------~~KI~~i~g~a~esLd  139 (237)
T KOG1663|consen   71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----------DHKITFIEGPALESLD  139 (237)
T ss_pred             HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----------cceeeeeecchhhhHH
Confidence            347789999999888888887754   668999999 5688888777777766           567888774332211 


Q ss_pred             Cc--cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 HI--KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 ~~--~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ++  ....+.||+++.-  .+...+......+.+++++||++++-.
T Consensus       140 ~l~~~~~~~tfDfaFvD--adK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  140 ELLADGESGTFDFAFVD--ADKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             HHHhcCCCCceeEEEEc--cchHHHHHHHHHHHhhcccccEEEEec
Confidence            11  1235789999933  455555577788888999999987643

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.11  E-value=7.9e-06  Score=67.16  Aligned_cols=119  Identities=14%  Similarity=0.130  Sum_probs=77.6

Q ss_pred             CCCcEEEeCCcccH----HHHHHHHhC-------CeEEEecch-hhHHHHHHHHHH--hh---hhh---ccC---CCC--
Q 027659           64 KGKRVIELGAGCGV----AGFGMALLG-------CNVITTDQI-EVLPLLKRNVEW--NT---SRI---SQM---NPG--  118 (220)
Q Consensus        64 ~~~~vLELGcG~G~----~~l~la~~g-------~~v~~~D~~-~~l~~~~~n~~~--n~---~~~---~~~---~~~--  118 (220)
                      +.-+|+-.||+||-    +++.+...+       .+|++||++ .+|+.|+.-+=.  +.   +..   .+.   .++  
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            35689999999995    344444332       369999995 599888753311  11   100   000   000  


Q ss_pred             ----CCCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CCCC-ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          119 ----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YAEH-LLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       119 ----~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~~~-~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                          ......|.|..++-.....   ..+.||+|+|-.|  |... .-..++..+...|+|||.+++.+...-.
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~~~  246 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSETIP  246 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcccC
Confidence                1124467777765544321   4678999999999  6654 5678999999999999999998776544

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=98.08  E-value=8.8e-06  Score=70.06  Aligned_cols=94  Identities=17%  Similarity=0.211  Sum_probs=66.2

Q ss_pred             cEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc-cCC
Q 027659           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAP  143 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-~~~  143 (220)
                      .|||+|+|||++++++++.|+. |++++. ..|.+.+++-...|+.           .++|.++.-   ...+... ...
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~-----------SdkI~vInk---rStev~vg~~~  134 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGM-----------SDKINVINK---RSTEVKVGGSS  134 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCC-----------ccceeeecc---ccceeeecCcc
Confidence            5999999999999999999985 999996 7899999999999987           467776652   1111111 123


Q ss_pred             CccEEEEecC----CCCCChHHHHHHHHHhhCCCc
Q 027659          144 PFDYIIGTDV----YAEHLLEPLLQTIFALSGPKT  174 (220)
Q Consensus       144 ~fD~V~~~d~----y~~~~~~~l~~~l~~~l~~~g  174 (220)
                      +.|+++..+.    -....++.+-.....++.++.
T Consensus       135 RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc  169 (636)
T KOG1501|consen  135 RADIAVREDFDTELIGEGALPSLQHAHDMLLVDNC  169 (636)
T ss_pred             hhhhhhHhhhhhhhhccccchhHHHHHHHhcccCC
Confidence            4677766554    123345666666667777653

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.06  E-value=5.9e-05  Score=62.06  Aligned_cols=112  Identities=12%  Similarity=0.035  Sum_probs=87.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-C---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-G---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      +.-+|||+-||.|..=+-+... .   .+|++.|+ +..++..++-++.+++           ..-+++.+.|-.+....
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL-----------~~i~~f~~~dAfd~~~l  203 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL-----------EDIARFEQGDAFDRDSL  203 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC-----------ccceEEEecCCCCHhHh
Confidence            4568999999999987766543 2   35999999 5599999999999987           34559999877666555


Q ss_pred             cccCCCccEEEEecC--CCCC--ChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659          139 KAVAPPFDYIIGTDV--YAEH--LLEPLLQTIFALSGPKTTILLGYEIRSTS  186 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~--y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r~~~  186 (220)
                      ......+++++.+.+  ++.+  .+...++-+..++.|||.++.+....++.
T Consensus       204 ~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ  255 (311)
T PF12147_consen  204 AALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ  255 (311)
T ss_pred             hccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence            555678899999999  4444  35667888888999999999887777764

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.04  E-value=1.4e-05  Score=63.40  Aligned_cols=99  Identities=12%  Similarity=0.112  Sum_probs=75.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..+.++|||||.|.+.--+...|. +++.+|.+ .|++.++..-. +..             .+....   ++.+.++..
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i-------------~~~~~v---~DEE~Ldf~  134 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSI-------------ETSYFV---GDEEFLDFK  134 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cce-------------EEEEEe---cchhccccc
Confidence            356899999999999988887776 59999985 57776654211 211             223333   455556667


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ++++|+|+++-. ++..+++..+..++..|||+|.++-+
T Consensus       135 ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fias  173 (325)
T KOG2940|consen  135 ENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIAS  173 (325)
T ss_pred             ccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhH
Confidence            889999999988 99999999999999999999988754

>PRK00536 speE spermidine synthase; Provisional

Probab=98.03  E-value=0.00013  Score=59.97  Aligned_cols=119  Identities=8%  Similarity=-0.094  Sum_probs=79.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ..++||=+|.|-|...-.+.+...+|+++|+ +++++.+++-.......        -..+++++..  |-.    ....
T Consensus        72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~--------~~DpRv~l~~--~~~----~~~~  137 (262)
T PRK00536         72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEV--------KNNKNFTHAK--QLL----DLDI  137 (262)
T ss_pred             CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHh--------hcCCCEEEee--hhh----hccC
Confidence            4579999999999999999988668999999 56999998844322111        0134666654  211    1123


Q ss_pred             CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE--EecCchHHHHHHHHHhcCCe
Q 027659          143 PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY--EIRSTSVHEQMLQMWKSNFN  200 (220)
Q Consensus       143 ~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~--~~r~~~~~~~f~~~~~~~f~  200 (220)
                      ++||+||.-..|.    +.+.+.+++.|+|+|.++.-.  +.-..+.+....+.+++.|.
T Consensus       138 ~~fDVIIvDs~~~----~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~  193 (262)
T PRK00536        138 KKYDLIICLQEPD----IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGDFFS  193 (262)
T ss_pred             CcCCEEEEcCCCC----hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHhhCC
Confidence            6899999432255    456688899999999988632  22223345555666666776

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.01  E-value=0.00025  Score=60.02  Aligned_cols=117  Identities=12%  Similarity=0.077  Sum_probs=68.9

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      +++.-|.+.+..............+|+++|||||++|-.+-.+++.|++|+++|...+-+.+    ..            
T Consensus       187 Rs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L----~~------------  250 (357)
T PRK11760        187 RSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSL----MD------------  250 (357)
T ss_pred             hHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhh----hC------------
Confidence            34555665554332100000124588999999999999999999999999999964432222    21            


Q ss_pred             CCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCC--cEEEEEE
Q 027659          120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPK--TTILLGY  180 (220)
Q Consensus       120 ~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~--g~~~i~~  180 (220)
                        .++|.....+--..  .+ ..+.+|+|+|--+   ..+..+...+...+..|  ..+++..
T Consensus       251 --~~~V~h~~~d~fr~--~p-~~~~vDwvVcDmv---e~P~rva~lm~~Wl~~g~cr~aIfnL  305 (357)
T PRK11760        251 --TGQVEHLRADGFKF--RP-PRKNVDWLVCDMV---EKPARVAELMAQWLVNGWCREAIFNL  305 (357)
T ss_pred             --CCCEEEEeccCccc--CC-CCCCCCEEEEecc---cCHHHHHHHHHHHHhcCcccEEEEEE
Confidence              24566665332221  11 1568999887655   22445556666666544  3444443

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.01  E-value=2.4e-05  Score=58.05  Aligned_cols=57  Identities=25%  Similarity=0.363  Sum_probs=47.0

Q ss_pred             cEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           67 RVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      .+||+|||.|..++.+++.+.  +|+++|. +++.+.+++|++.|+.            .++.+....+++.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~------------~~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL------------PNVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC------------CcEEEEEeeeeCC
Confidence            489999999999999998876  5999997 7799999999999875            2466666666543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.99  E-value=1.9e-05  Score=65.64  Aligned_cols=117  Identities=22%  Similarity=0.273  Sum_probs=74.9

Q ss_pred             CCcEEEeCCcccH----HHHHHHHh------CCeEEEecc-hhhHHHHHHHHHH-h---hhhh---ccC-----CCC---
Q 027659           65 GKRVIELGAGCGV----AGFGMALL------GCNVITTDQ-IEVLPLLKRNVEW-N---TSRI---SQM-----NPG---  118 (220)
Q Consensus        65 ~~~vLELGcG~G~----~~l~la~~------g~~v~~~D~-~~~l~~~~~n~~~-n---~~~~---~~~-----~~~---  118 (220)
                      ..+|+-.||.||-    +++.+...      ..+|++||+ +.+|+.|++.+-. .   ++..   .+.     .+.   
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3699999999995    33333332      136999999 5699998875311 0   0000   000     000   


Q ss_pred             ----CCCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CC-CCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          119 ----SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YA-EHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       119 ----~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~-~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                          ......|.|..++..+.. .+ ..+.||+|+|..+  |+ .+....+++.+.+.|+|||.+++.+...
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~-~~-~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~sEs  265 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQ-WA-VPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHSEN  265 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCC-Cc-cCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCccc
Confidence                012356777776655421 11 2468999999888  55 4457899999999999999998877543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.97  E-value=4.9e-05  Score=68.29  Aligned_cols=106  Identities=11%  Similarity=0.018  Sum_probs=73.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+..+||||||.|-..+.+|....  .++++|. ...+..+.+.+...++            .|+.+...++...... .
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l------------~N~~~~~~~~~~~~~~-~  413 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI------------TNFLLFPNNLDLILND-L  413 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC------------CeEEEEcCCHHHHHHh-c
Confidence            467899999999999999998866  4999997 4555555555554443            4677766443221111 2


Q ss_pred             cCCCccEEEEecC--CCCC-------ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          141 VAPPFDYIIGTDV--YAEH-------LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~-------~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      .+.++|-|..+-+  +...       ..+.+++.+.++|+|||.++++...
T Consensus       414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~  464 (506)
T PRK01544        414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI  464 (506)
T ss_pred             CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence            3567898877666  4322       2468999999999999999986543

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.92  E-value=6.2e-06  Score=64.90  Aligned_cols=116  Identities=16%  Similarity=0.190  Sum_probs=67.2

Q ss_pred             CCCcEEEeCCcccHH----HHHHHHh-----C--CeEEEecc-hhhHHHHHHHH-HHhhhhh------cc----CCC---
Q 027659           64 KGKRVIELGAGCGVA----GFGMALL-----G--CNVITTDQ-IEVLPLLKRNV-EWNTSRI------SQ----MNP---  117 (220)
Q Consensus        64 ~~~~vLELGcG~G~~----~l~la~~-----g--~~v~~~D~-~~~l~~~~~n~-~~n~~~~------~~----~~~---  117 (220)
                      +..+|+-.||+||-=    ++.+...     +  .+|++||+ +.+++.|++-+ ..+.+..      .+    ...   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            446899999999963    3333331     1  37999999 55888886532 1111100      00    000   


Q ss_pred             --CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CC-CCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          118 --GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YA-EHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       118 --~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~-~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                        ...-..+|.|..++..+   .....+.||+|+|..|  |. .+....+++.+.+.|+|||.+++....
T Consensus       111 ~v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE  177 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSE  177 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT-
T ss_pred             eEChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCc
Confidence              00124578888877666   1224679999999999  55 455688999999999999999997644

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.92  E-value=0.00012  Score=60.23  Aligned_cols=108  Identities=17%  Similarity=0.204  Sum_probs=72.7

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      ..-+++-+.+..       ...++..|||+|+|+|.++..++..+.+|+++|. ++.++.+++....             
T Consensus        15 ~~~~~~~Iv~~~-------~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~-------------   74 (262)
T PF00398_consen   15 DPNIADKIVDAL-------DLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS-------------   74 (262)
T ss_dssp             HHHHHHHHHHHH-------TCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT-------------
T ss_pred             CHHHHHHHHHhc-------CCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh-------------
Confidence            444555555543       2337889999999999999999999988999998 5688888776552             


Q ss_pred             CCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCC
Q 027659          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGP  172 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~  172 (220)
                       ..++++...|................|++|-+|.  .-.+++..+...-+.
T Consensus        75 -~~~~~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~--is~~il~~ll~~~~~  123 (262)
T PF00398_consen   75 -NPNVEVINGDFLKWDLYDLLKNQPLLVVGNLPYN--ISSPILRKLLELYRF  123 (262)
T ss_dssp             -CSSEEEEES-TTTSCGGGHCSSSEEEEEEEETGT--GHHHHHHHHHHHGGG
T ss_pred             -cccceeeecchhccccHHhhcCCceEEEEEeccc--chHHHHHHHhhcccc
Confidence             3578888866655432221234667888887763  234555555443333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.86  E-value=0.00025  Score=56.17  Aligned_cols=115  Identities=17%  Similarity=0.080  Sum_probs=70.9

Q ss_pred             EEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659           68 VIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (220)
Q Consensus        68 vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~  144 (220)
                      |.|+||--|.+++.|.+.|.  +|+++|+ +.-++.++.|++.+++           ..++++...|=-  ..++ +.+.
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l-----------~~~i~~rlgdGL--~~l~-~~e~   66 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGL-----------EDRIEVRLGDGL--EVLK-PGED   66 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT------------TTTEEEEE-SGG--GG---GGG-
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------cccEEEEECCcc--cccC-CCCC
Confidence            68999999999999999986  5999999 5599999999999887           467888874311  1121 2234


Q ss_pred             ccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeE
Q 027659          145 FDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       145 fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v  201 (220)
                      .|.|+.+.+ -.  .+..++......++.... +|..|.......+.|+.  +.+|.+
T Consensus        67 ~d~ivIAGMGG~--lI~~ILe~~~~~~~~~~~-lILqP~~~~~~LR~~L~--~~gf~I  119 (205)
T PF04816_consen   67 VDTIVIAGMGGE--LIIEILEAGPEKLSSAKR-LILQPNTHAYELRRWLY--ENGFEI  119 (205)
T ss_dssp             --EEEEEEE-HH--HHHHHHHHTGGGGTT--E-EEEEESS-HHHHHHHHH--HTTEEE
T ss_pred             CCEEEEecCCHH--HHHHHHHhhHHHhccCCe-EEEeCCCChHHHHHHHH--HCCCEE
Confidence            799988887 22  244444444444444344 45566665544555543  446655

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=0.00088  Score=57.59  Aligned_cols=113  Identities=19%  Similarity=0.167  Sum_probs=76.6

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhC----CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...|.+|||+-++.|-=+..+|++.    ..|++.|. +.=++.++.|++.-+.            .++.....|-....
T Consensus       154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------------~nv~~~~~d~~~~~  221 (355)
T COG0144         154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------------RNVIVVNKDARRLA  221 (355)
T ss_pred             CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------------CceEEEeccccccc
Confidence            3477899999999987777666553    34799998 5589999999998876            34566654433322


Q ss_pred             CccccCCCccEEEEecC-CC-------CC---------------ChHHHHHHHHHhhCCCcEEEEEEEecCch
Q 027659          137 HIKAVAPPFDYIIGTDV-YA-------EH---------------LLEPLLQTIFALSGPKTTILLGYEIRSTS  186 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~-y~-------~~---------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~  186 (220)
                      .......+||.|+.-.+ =.       ++               ....++....++|+|||.++.+.....++
T Consensus       222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e  294 (355)
T COG0144         222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE  294 (355)
T ss_pred             ccccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchh
Confidence            22222336999987443 11       11               13357777788899999988887766553

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=97.84  E-value=1.4e-05  Score=65.33  Aligned_cols=123  Identities=24%  Similarity=0.207  Sum_probs=75.7

Q ss_pred             ccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhh
Q 027659           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS  110 (220)
Q Consensus        32 ~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~  110 (220)
                      ..+|..+|++++.|.+++.++       |....+.++.++|||.++....+++..--|...|- ..+.-++..+...+..
T Consensus        65 ~~tg~~~w~~al~L~~~l~~~-------~d~~~~~~v~~l~~gi~~~~~~~a~~~~~v~~~~~~~~~~~~l~~~~~~~~~  137 (262)
T KOG2497|consen   65 ARTGLSVWESALSLEADLRDK-------PDLSSELTVEELGCDIALKHVLAARVPDCVVTLDSLRCAGLLLEEIILLSRD  137 (262)
T ss_pred             HHhccccchHHHHHHHHHhhC-------cccccccchHhhccCHHHHHHHHHhcccceecCCccCcHHHHHHHHHhcccc
Confidence            467889999999999999988       35578899999999999988666665443444443 2233333333333221


Q ss_pred             hhccCCCCCCCCCceEEEEeeeCCCCCccc-cCCCccEEEEecC-CCCCChHHHHHHHHHhh
Q 027659          111 RISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDV-YAEHLLEPLLQTIFALS  170 (220)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l  170 (220)
                      ..        ...+-+...++|......+. ....+|+|+++|+ |. ....+++.+...+|
T Consensus       138 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~AdV~yd-~~~~~~~~~~~~lL  190 (262)
T KOG2497|consen  138 LS--------LEVRDSAPELNQAFLESKPETSQEFTDLLGGADVIYD-TELRHLLETLMTLL  190 (262)
T ss_pred             cc--------ccccccchhHHHHHHhcCcccccchhhheeccCeeeh-hhhhHHHHHHHHHH
Confidence            10        01111222222222111111 1234999999999 99 77778888777764

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.82  E-value=1.3e-05  Score=65.37  Aligned_cols=146  Identities=16%  Similarity=0.256  Sum_probs=81.0

Q ss_pred             CCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhh-hh-------ccCCCCC--------CC
Q 027659           60 PSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTS-RI-------SQMNPGS--------DL  121 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~-~~-------~~~~~~~--------~~  121 (220)
                      +...+|.++||+|||+-+..+..|..-. +++++|+ +..++.+++=++.-+. ..       +......        ..
T Consensus        52 ~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~l  131 (256)
T PF01234_consen   52 SGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKL  131 (256)
T ss_dssp             TSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHH
T ss_pred             ccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHH
Confidence            4567888999999999777665564444 5999998 5566666554332110 00       0000000        00


Q ss_pred             CCceE-EEEeeeCCCCCccc---cCCCccEEEEecC--CC---CCChHHHHHHHHHhhCCCcEEEEEEEecCc-------
Q 027659          122 LGSIQ-AVELDWGNEDHIKA---VAPPFDYIIGTDV--YA---EHLLEPLLQTIFALSGPKTTILLGYEIRST-------  185 (220)
Q Consensus       122 ~~~v~-~~~ldw~~~~~~~~---~~~~fD~V~~~d~--y~---~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-------  185 (220)
                      ...|+ +...|......+..   .+++||+|+++-|  .-   .+.+...++.+.++|||||.++++.-....       
T Consensus       132 R~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~  211 (256)
T PF01234_consen  132 RRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGH  211 (256)
T ss_dssp             HHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTE
T ss_pred             HHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCE
Confidence            11233 44555555544432   2346999999988  33   334667777788889999999988643322       


Q ss_pred             -----hHHHHHH-HHHh-cCCeEEEee
Q 027659          186 -----SVHEQML-QMWK-SNFNVKLVP  205 (220)
Q Consensus       186 -----~~~~~f~-~~~~-~~f~v~~v~  205 (220)
                           ...+.++ +.++ .+|.+....
T Consensus       212 ~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  212 KFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             EEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             ecccccCCHHHHHHHHHHcCCEEEecc
Confidence                 1124444 4554 489988776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.78  E-value=0.00033  Score=56.12  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=74.8

Q ss_pred             ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecch--hhHHHHHHHHHHhhhhhcc
Q 027659           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQI--EVLPLLKRNVEWNTSRISQ  114 (220)
Q Consensus        38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~--~~l~~~~~n~~~n~~~~~~  114 (220)
                      +=+++.-|...|.+.       .-.++|+.|||+|+-||-.+.++.+.||+ |+++|..  +.-.-++.+          
T Consensus        60 VSRG~~KL~~ale~F-------~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d----------  122 (245)
T COG1189          60 VSRGGLKLEKALEEF-------ELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRND----------  122 (245)
T ss_pred             cccHHHHHHHHHHhc-------CcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcC----------
Confidence            445688898888876       35679999999999999999999999986 9999962  332333221          


Q ss_pred             CCCCCCCCCceEEE-EeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          115 MNPGSDLLGSIQAV-ELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       115 ~~~~~~~~~~v~~~-~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                              .++... ..+...... ....+..|++++--.|  -....++..+..++++++.++.-.
T Consensus       123 --------~rV~~~E~tN~r~l~~-~~~~~~~d~~v~DvSF--ISL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         123 --------PRVIVLERTNVRYLTP-EDFTEKPDLIVIDVSF--ISLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             --------CcEEEEecCChhhCCH-HHcccCCCeEEEEeeh--hhHHHHHHHHHHhcCCCceEEEEe
Confidence                    233332 222111111 1123467888754332  236677788888888887766543

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.74  E-value=0.00035  Score=57.01  Aligned_cols=127  Identities=16%  Similarity=0.103  Sum_probs=82.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      +.++||=||-|.|...-.+.+..  .+|+++|+ +++++.+++-.......        ...+++++...|-...  +..
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--------~~d~r~~i~~~Dg~~~--l~~  145 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG--------LDDPRVRIIIGDGRKF--LKE  145 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT--------GGSTTEEEEESTHHHH--HHT
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc--------cCCCceEEEEhhhHHH--HHh
Confidence            56899999999999988888765  47999999 66889988866544321        0135777776332111  112


Q ss_pred             cCC-CccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEEecC--chHHHHHHHHHhcCCe
Q 027659          141 VAP-PFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKSNFN  200 (220)
Q Consensus       141 ~~~-~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~~r~--~~~~~~f~~~~~~~f~  200 (220)
                      ..+ +||+|+.--.  ....   .-.++.+.+++.|+|+|++++-.....  ........+.++..|.
T Consensus       146 ~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~  213 (246)
T PF01564_consen  146 TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSVFP  213 (246)
T ss_dssp             SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTTSS
T ss_pred             ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHhCC
Confidence            234 8999997333  1111   247899999999999999887553322  2234455566676665

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.74  E-value=0.00097  Score=48.46  Aligned_cols=103  Identities=24%  Similarity=0.297  Sum_probs=65.1

Q ss_pred             EEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC-
Q 027659           68 VIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA-  142 (220)
Q Consensus        68 vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~-  142 (220)
                      ++|+|||+|... .++...   ..++++|. +.++...+..... ..           ...+.+...++... ..+... 
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~-~~~~~~~  117 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AG-----------LGLVDFVVADALGG-VLPFEDS  117 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cC-----------CCceEEEEeccccC-CCCCCCC
Confidence            999999999877 444443   37888998 4566663333322 11           01145666554431 122223 


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      ..||++..... +... ...++..+.+.++|+|.+++.......
T Consensus       118 ~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         118 ASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             CceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            47999944434 3333 888999999999999999888765443

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.69  E-value=2.4e-05  Score=60.68  Aligned_cols=52  Identities=27%  Similarity=0.177  Sum_probs=35.8

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC---CeEEEecchh
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE   96 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~~~   96 (220)
                      +++.-|.+-+....   .+  ....+.+||||||++|-.+-++++.+   .+|+++|...
T Consensus         4 Ra~~KL~ei~~~~~---~~--~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~   58 (181)
T PF01728_consen    4 RAAFKLYEIDEKFK---IF--KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGP   58 (181)
T ss_dssp             THHHHHHHHHHTTS---SS---TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSS
T ss_pred             HHHHHHHHHHHHCC---CC--CcccccEEEEcCCcccceeeeeeecccccceEEEEeccc
Confidence            35566666665441   00  11145899999999999999999887   5799999844

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PHA01634 hypothetical protein

Probab=97.66  E-value=0.00021  Score=51.71  Aligned_cols=50  Identities=14%  Similarity=0.260  Sum_probs=44.7

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhh
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTS  110 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~  110 (220)
                      -++++++|+|+|++.|--++.++..||+ |++.+. +...+.+++|++.|..
T Consensus        25 idvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         25 LNVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             eeecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence            4678999999999999999999999997 999997 5588899999998854

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.65  E-value=0.00023  Score=53.01  Aligned_cols=47  Identities=17%  Similarity=0.186  Sum_probs=37.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHH------hCCeEEEecc-hhhHHHHHHHHHHhh
Q 027659           63 LKGKRVIELGAGCGVAGFGMAL------LGCNVITTDQ-IEVLPLLKRNVEWNT  109 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~------~g~~v~~~D~-~~~l~~~~~n~~~n~  109 (220)
                      .+..+|+|+|||.|.+|..++.      .+.+|+++|. ++.++.+++..+...
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   77 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG   77 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence            4567899999999999999998      3567999998 557777777666544

>PRK10742 putative methyltransferase; Provisional

Probab=97.65  E-value=0.0003  Score=57.01  Aligned_cols=86  Identities=17%  Similarity=0.265  Sum_probs=56.6

Q ss_pred             cEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCc
Q 027659           67 RVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF  145 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~f  145 (220)
                      +|||+-+|+|..|+.+|.+|++|+++|. +.+..+++.|++...... ....  ....++++...|-.+.  +......|
T Consensus        91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~-~~~~--~~~~ri~l~~~da~~~--L~~~~~~f  165 (250)
T PRK10742         91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADA-EIGG--WLQERLQLIHASSLTA--LTDITPRP  165 (250)
T ss_pred             EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhcc-ccch--hhhceEEEEeCcHHHH--HhhCCCCC
Confidence            8999999999999999999999999998 568888999888632100 0000  0013455555332221  11123479


Q ss_pred             cEEEEecCCCCC
Q 027659          146 DYIIGTDVYAEH  157 (220)
Q Consensus       146 D~V~~~d~y~~~  157 (220)
                      |+|+.-++|...
T Consensus       166 DVVYlDPMfp~~  177 (250)
T PRK10742        166 QVVYLDPMFPHK  177 (250)
T ss_pred             cEEEECCCCCCC
Confidence            999977776543

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.63  E-value=0.00014  Score=60.80  Aligned_cols=45  Identities=11%  Similarity=0.002  Sum_probs=38.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHH
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEW  107 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~  107 (220)
                      .++..+||.+||.|--+..+++..   .+|+++|. +++++.+++++..
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~   66 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP   66 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc
Confidence            356799999999999999999764   57999998 7799999887643

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=0.0048  Score=48.65  Aligned_cols=117  Identities=18%  Similarity=0.213  Sum_probs=76.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-CC--eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc-
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-GC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~-  139 (220)
                      .+.+|+||||-.|-.+.++++. ++  +|+++|+.++-.                      ...|.+.+.|........ 
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----------------------~~~V~~iq~d~~~~~~~~~  102 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----------------------IPGVIFLQGDITDEDTLEK  102 (205)
T ss_pred             CCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------------------CCCceEEeeeccCccHHHH
Confidence            5789999999999999999976 43  399999844111                      235788888887765321 


Q ss_pred             ----ccCCCccEEEEecC-----CCCCC-------hHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEE
Q 027659          140 ----AVAPPFDYIIGTDV-----YAEHL-------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL  203 (220)
Q Consensus       140 ----~~~~~fD~V~~~d~-----y~~~~-------~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~  203 (220)
                          ....++|+|++-..     ....+       ....+......|+|+|.+++-.-.-  +..+.++..+++.|+...
T Consensus       103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg--~~~~~~l~~~~~~F~~v~  180 (205)
T COG0293         103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG--EDFEDLLKALRRLFRKVK  180 (205)
T ss_pred             HHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeC--CCHHHHHHHHHHhhceeE
Confidence                12334699985322     11111       2234444556789999988754332  235788888888876544


Q ss_pred             e
Q 027659          204 V  204 (220)
Q Consensus       204 v  204 (220)
                      +
T Consensus       181 ~  181 (205)
T COG0293         181 I  181 (205)
T ss_pred             E
Confidence            4

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.59  E-value=0.00099  Score=55.03  Aligned_cols=101  Identities=17%  Similarity=0.124  Sum_probs=62.3

Q ss_pred             CCcEEEeCCcc-cHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHH-HhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           65 GKRVIELGAGC-GVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        65 ~~~vLELGcG~-G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .++|+=||||. -+.++.+++.   ++.|+.+|+ +++++.+++-+. ..++           ..++.+...|-.+.   
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----------~~~m~f~~~d~~~~---  186 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----------SKRMSFITADVLDV---  186 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------------SSEEEEES-GGGG---
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----------cCCeEEEecchhcc---
Confidence            35999999997 8889999864   456999998 679999988777 4455           46788888654332   


Q ss_pred             cccCCCccEEEEecC-C-CCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          139 KAVAPPFDYIIGTDV-Y-AEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y-~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ...-..||+|+.+-. . ..+.-..++..+.+.++||..+++=
T Consensus       187 ~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  187 TYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             -GG----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             ccccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            112358999987777 3 5556789999999999999988874

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.52  E-value=0.0012  Score=54.78  Aligned_cols=103  Identities=18%  Similarity=0.271  Sum_probs=58.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+..++|||+|||+|....++... +  .+++++|. +.|++..+.-+.....           ............+.  
T Consensus        31 ~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-----------~~~~~~~~~~~~~~--   97 (274)
T PF09243_consen   31 DFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-----------NRNAEWRRVLYRDF--   97 (274)
T ss_pred             CCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-----------cccchhhhhhhccc--
Confidence            467789999999999877766643 2  35999998 5588877664432211           00000000000111  


Q ss_pred             ccccCCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          138 IKAVAPPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      .  .....|+|+++-+ -.  ......+++.+...+++  .++|..+
T Consensus        98 ~--~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEp  140 (274)
T PF09243_consen   98 L--PFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEP  140 (274)
T ss_pred             c--cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcC
Confidence            1  1123499999998 32  24455666666666655  5555544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.51  E-value=0.0036  Score=49.85  Aligned_cols=157  Identities=15%  Similarity=0.153  Sum_probs=92.0

Q ss_pred             cccccccch-HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHH-hC--CeEEEecc-hhhHHHHHHHHHH
Q 027659           33 HLGTTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LG--CNVITTDQ-IEVLPLLKRNVEW  107 (220)
Q Consensus        33 ~~g~~~W~~-s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~-~g--~~v~~~D~-~~~l~~~~~n~~~  107 (220)
                      ....++|+- -.-|+..|......    -...+|.+||=||+.+|..---++. .|  ..|++++. +...+.+-. ++.
T Consensus        45 ~~eYR~W~P~RSKLaAai~~Gl~~----~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~-la~  119 (229)
T PF01269_consen   45 KVEYRVWNPFRSKLAAAILKGLEN----IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLN-LAK  119 (229)
T ss_dssp             -EEEEEE-TTT-HHHHHHHTT-S------S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH-HHH
T ss_pred             ccceeecCchhhHHHHHHHcCccc----cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHH-Hhc
Confidence            346678865 23455555433210    1345789999999999987777775 34  36999998 444333322 221


Q ss_pred             hhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCch-
Q 027659          108 NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS-  186 (220)
Q Consensus       108 n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~-  186 (220)
                      .             ..||-..--|-..+..-...-+..|+|++- +-.+++.+-++.....+|++||.++++.+.|+-+ 
T Consensus       120 ~-------------R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D-VaQp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~  185 (229)
T PF01269_consen  120 K-------------RPNIIPILEDARHPEKYRMLVEMVDVIFQD-VAQPDQARIAALNARHFLKPGGHLIISIKARSIDS  185 (229)
T ss_dssp             H-------------STTEEEEES-TTSGGGGTTTS--EEEEEEE--SSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-S
T ss_pred             c-------------CCceeeeeccCCChHHhhcccccccEEEec-CCChHHHHHHHHHHHhhccCCcEEEEEEecCcccC
Confidence            1             357777776665555443345688988853 4345567778888889999999999999877643 


Q ss_pred             ------HHHHHHHHHhc-CCeE-EEeeCCC
Q 027659          187 ------VHEQMLQMWKS-NFNV-KLVPKAK  208 (220)
Q Consensus       187 ------~~~~f~~~~~~-~f~v-~~v~~~~  208 (220)
                            ++..-.+.+++ +|++ +.+.-+.
T Consensus       186 t~~p~~vf~~e~~~L~~~~~~~~e~i~LeP  215 (229)
T PF01269_consen  186 TADPEEVFAEEVKKLKEEGFKPLEQITLEP  215 (229)
T ss_dssp             SSSHHHHHHHHHHHHHCTTCEEEEEEE-TT
T ss_pred             cCCHHHHHHHHHHHHHHcCCChheEeccCC
Confidence                  23333455554 7888 4444433

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.48  E-value=0.0018  Score=51.23  Aligned_cols=132  Identities=17%  Similarity=0.170  Sum_probs=79.9

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC-CeEEEecchhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      ++.+|.+||.......   .......++||+||=+.-..+.  ..+ .+|+.+|+..                       
T Consensus        31 SSK~lv~wL~~~~~~~---~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns-----------------------   82 (219)
T PF11968_consen   31 SSKWLVEWLKELGVRP---KNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS-----------------------   82 (219)
T ss_pred             hhHHHHHHhhhhcccc---ccccccceEEeecccCCCCccc--ccCceeeEEeecCC-----------------------
Confidence            7999999998763210   0111236899999864332222  222 2599999732                       


Q ss_pred             CCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CCCCC--hHHHHHHHHHhhCCCcE-----EEEEEEe------cC
Q 027659          120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YAEHL--LEPLLQTIFALSGPKTT-----ILLGYEI------RS  184 (220)
Q Consensus       120 ~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~~~~--~~~l~~~l~~~l~~~g~-----~~i~~~~------r~  184 (220)
                         ..-.+.+.|+-+........++||+|.+|-|  |-+..  --..++.+.++|+|+|.     ++|+.|.      |.
T Consensus        83 ---~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy  159 (219)
T PF11968_consen   83 ---QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRY  159 (219)
T ss_pred             ---CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCchHhhcccc
Confidence               0113334444433211123678999999999  66543  34688888999999999     8887653      22


Q ss_pred             chHHHHHHHHHhc-CCeEEEe
Q 027659          185 TSVHEQMLQMWKS-NFNVKLV  204 (220)
Q Consensus       185 ~~~~~~f~~~~~~-~f~v~~v  204 (220)
                      . ..+.|.+.+.. +|...+.
T Consensus       160 ~-~~~~l~~im~~LGf~~~~~  179 (219)
T PF11968_consen  160 M-TEERLREIMESLGFTRVKY  179 (219)
T ss_pred             c-CHHHHHHHHHhCCcEEEEE
Confidence            2 24566666654 7766443

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.47  E-value=0.0015  Score=53.76  Aligned_cols=138  Identities=18%  Similarity=0.153  Sum_probs=81.7

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhh------hhc--------------c----CC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTS------RIS--------------Q----MN  116 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~------~~~--------------~----~~  116 (220)
                      .....+||==|||.|.++..+|.+|..|.+.|.+- |+-  ..|.-.|..      .+-              +    ..
T Consensus        54 ~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll--~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~i  131 (270)
T PF07942_consen   54 DRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLL--ASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRI  131 (270)
T ss_pred             CCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHH--HHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEe
Confidence            34567899999999999999999999999999865 532  223333321      110              0    01


Q ss_pred             CC----C--CCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCC---CChHHHHHHHHHhhCCCcEEEEEE----Eec
Q 027659          117 PG----S--DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAE---HLLEPLLQTIFALSGPKTTILLGY----EIR  183 (220)
Q Consensus       117 ~~----~--~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~---~~~~~l~~~l~~~l~~~g~~~i~~----~~r  183 (220)
                      |+    +  ....++.....|+.+....+...++||.|+.+  |+.   ..+-..+++|.++|||||.-+=..    ...
T Consensus       132 PDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~--FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~  209 (270)
T PF07942_consen  132 PDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTC--FFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFE  209 (270)
T ss_pred             CCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEE--EEeechHHHHHHHHHHHHHhccCCEEEecCCccccCC
Confidence            10    0  12345555554443332222224799999865  433   346788899999999999544221    111


Q ss_pred             Cc---------hHHHHHHHHHhc-CCeEEE
Q 027659          184 ST---------SVHEQMLQMWKS-NFNVKL  203 (220)
Q Consensus       184 ~~---------~~~~~f~~~~~~-~f~v~~  203 (220)
                      ..         -..+++....+. +|++..
T Consensus       210 ~~~~~~~~sveLs~eEi~~l~~~~GF~~~~  239 (270)
T PF07942_consen  210 PMSIPNEMSVELSLEEIKELIEKLGFEIEK  239 (270)
T ss_pred             CCCCCCCcccCCCHHHHHHHHHHCCCEEEE
Confidence            11         114566666644 888854

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.44  E-value=0.00085  Score=56.73  Aligned_cols=108  Identities=14%  Similarity=0.147  Sum_probs=68.9

Q ss_pred             CCCcEEEeCCcccHHHHHHH-Hh-----CCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEE--EEeeeCC
Q 027659           64 KGKRVIELGAGCGVAGFGMA-LL-----GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA--VELDWGN  134 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la-~~-----g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~--~~ldw~~  134 (220)
                      .+..++|||||.|.=.-.+. .+     ...++.+|++ ++|+.+..++....            .+.+.+  ...|+.+
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~------------~p~l~v~~l~gdy~~  143 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN------------FSHVRCAGLLGTYDD  143 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc------------CCCeEEEEEEecHHH
Confidence            45689999999987543332 22     3469999995 58888888776222            134444  4444433


Q ss_pred             CCC-ccc--cCCCccEEEEec--C--CCCCChHHHHHHHHH-hhCCCcEEEEEEEec
Q 027659          135 EDH-IKA--VAPPFDYIIGTD--V--YAEHLLEPLLQTIFA-LSGPKTTILLGYEIR  183 (220)
Q Consensus       135 ~~~-~~~--~~~~fD~V~~~d--~--y~~~~~~~l~~~l~~-~l~~~g~~~i~~~~r  183 (220)
                      ... ++.  ......+++.-.  +  +.+.....+++.+.+ .|+|++.++|..-..
T Consensus       144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~  200 (319)
T TIGR03439       144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGC  200 (319)
T ss_pred             HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCC
Confidence            321 111  123456665543  3  556667789999999 999999999986433

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.43  E-value=9.1e-05  Score=58.49  Aligned_cols=79  Identities=19%  Similarity=0.159  Sum_probs=65.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-cccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~~~  141 (220)
                      .-..|+|--||.|-..+..|..++.|+++|+ |.-+..++.|++..+.           .++|.+.+.||.+... +...
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI-----------~~rItFI~GD~ld~~~~lq~~  162 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGV-----------PDRITFICGDFLDLASKLKAD  162 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecC-----------CceeEEEechHHHHHHHHhhh
Confidence            3457999999999999999999999999999 6689999999999988           4699999999976542 2223


Q ss_pred             CCCccEEEEecC
Q 027659          142 APPFDYIIGTDV  153 (220)
Q Consensus       142 ~~~fD~V~~~d~  153 (220)
                      ...+|.|+.+++
T Consensus       163 K~~~~~vf~spp  174 (263)
T KOG2730|consen  163 KIKYDCVFLSPP  174 (263)
T ss_pred             hheeeeeecCCC
Confidence            345789999988

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=97.42  E-value=3.9e-05  Score=60.03  Aligned_cols=93  Identities=22%  Similarity=0.248  Sum_probs=67.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ...++||||+|.|-++...+..-.+|++|+.+. |...++..   |              -+ .....+|.+.      +
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk---~--------------yn-Vl~~~ew~~t------~  167 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK---N--------------YN-VLTEIEWLQT------D  167 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc---C--------------Cc-eeeehhhhhc------C
Confidence            457999999999999998887766799999855 66655432   1              11 2234566543      4


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCC-CcEEEEEE
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGP-KTTILLGY  180 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~-~g~~~i~~  180 (220)
                      -+||+|.|-.+ =...+.-.|++.+..+|.| +|.++++.
T Consensus       168 ~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  168 VKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             ceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence            57999998777 4444567899999999998 78888763

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.33  E-value=0.0016  Score=54.06  Aligned_cols=104  Identities=14%  Similarity=0.065  Sum_probs=71.4

Q ss_pred             CcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++||-||-|.|...-.+.+..  .+++++|+ +++++.+++=...-...        ...++++...-|-.+.  +....
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~--------~~dpRv~i~i~Dg~~~--v~~~~  147 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG--------ADDPRVEIIIDDGVEF--LRDCE  147 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc--------cCCCceEEEeccHHHH--HHhCC
Confidence            599999999999999999876  46999999 56888887755432210        0035666666332221  12234


Q ss_pred             CCccEEEEecC-CC---CC-ChHHHHHHHHHhhCCCcEEEEE
Q 027659          143 PPFDYIIGTDV-YA---EH-LLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       143 ~~fD~V~~~d~-y~---~~-~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      .+||+|+.--. ..   .. .-..+.+.++++|+++|++..-
T Consensus       148 ~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         148 EKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            48999996544 31   11 1378999999999999998764

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=97.33  E-value=0.00087  Score=52.94  Aligned_cols=104  Identities=17%  Similarity=0.104  Sum_probs=76.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+|.+||++|=|.|++.-.+..... +-+.++. |++++.++.+.-..             ..+|......|.+..+. .
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~e-------------k~nViil~g~WeDvl~~-L  165 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWRE-------------KENVIILEGRWEDVLNT-L  165 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccccc-------------ccceEEEecchHhhhcc-c
Confidence            4788999999999998888876654 4677786 88998888775432             45888899999876432 2


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      +++.||-|+---- -.-++...+.+.+.++|||+|++-.+.
T Consensus       166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN  206 (271)
T KOG1709|consen  166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN  206 (271)
T ss_pred             cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence            3567999874322 223446677788889999999876654

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.08  E-value=0.0014  Score=56.66  Aligned_cols=103  Identities=24%  Similarity=0.254  Sum_probs=71.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .+.+|||-=||+|+=|+-.+..  +. +|++-|+ +++++.+++|++.|++.          ...+++...|-...  +.
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~----------~~~~~v~~~DAn~l--l~  116 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE----------DERIEVSNMDANVL--LY  116 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----------GCCEEEEES-HHHH--HC
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----------CceEEEehhhHHHH--hh
Confidence            3458999999999999999976  33 5999999 67999999999999982          12466665333221  11


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      .....||+|=. |+|.  ...++++...+.++.||.++++.+
T Consensus       117 ~~~~~fD~IDl-DPfG--Sp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  117 SRQERFDVIDL-DPFG--SPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             HSTT-EEEEEE---SS----HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             hccccCCEEEe-CCCC--CccHhHHHHHHHhhcCCEEEEecc
Confidence            24678999843 2233  356899999999999999999874

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.05  E-value=0.024  Score=45.02  Aligned_cols=114  Identities=14%  Similarity=0.054  Sum_probs=75.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.++.|+||--|.+++.+.+.+.  .+++.|. +-.++.+.+|+..|++           ..++++...|--..  + .
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l-----------~~~i~vr~~dgl~~--l-~   81 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNL-----------SERIDVRLGDGLAV--L-E   81 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCC-----------cceEEEeccCCccc--c-C
Confidence            445699999999999999998764  4999998 5599999999999987           46777777543111  1 2


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHH
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ  193 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~  193 (220)
                      ....+|+|+.+.+ ....+..++..-...++.--.+ +-.|.-+....+.|+.
T Consensus        82 ~~d~~d~ivIAGM-GG~lI~~ILee~~~~l~~~~rl-ILQPn~~~~~LR~~L~  132 (226)
T COG2384          82 LEDEIDVIVIAGM-GGTLIREILEEGKEKLKGVERL-ILQPNIHTYELREWLS  132 (226)
T ss_pred             ccCCcCEEEEeCC-cHHHHHHHHHHhhhhhcCcceE-EECCCCCHHHHHHHHH
Confidence            3457999998887 1112444455444445433233 4455555544566654

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.96  E-value=0.042  Score=43.18  Aligned_cols=149  Identities=15%  Similarity=0.153  Sum_probs=91.7

Q ss_pred             ccccch-HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHH-hC-CeEEEecc-hhhHHHHHHHHHHhhhh
Q 027659           36 TTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LG-CNVITTDQ-IEVLPLLKRNVEWNTSR  111 (220)
Q Consensus        36 ~~~W~~-s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~-~g-~~v~~~D~-~~~l~~~~~n~~~n~~~  111 (220)
                      .+.|+. -.-|+.-+..-..    .-...+|.+||=||+-+|...--.+. .| ..|++++. +...+-+-.-++.    
T Consensus        51 YR~Wnp~RSKLaAaIl~Gl~----~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~----  122 (231)
T COG1889          51 YREWNPRRSKLAAAILKGLK----NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK----  122 (231)
T ss_pred             eeeeCcchhHHHHHHHcCcc----cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh----
Confidence            467765 2244544543321    12345789999999999987666664 34 35999998 5444333222221    


Q ss_pred             hccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchH----
Q 027659          112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSV----  187 (220)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~----  187 (220)
                                ..|+-....|...++.-...-+..|+|+. |+-.+.+.+-+......+|+++|.++++.+.|+-++    
T Consensus       123 ----------R~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~-DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp  191 (231)
T COG1889         123 ----------RPNIIPILEDARKPEKYRHLVEKVDVIYQ-DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP  191 (231)
T ss_pred             ----------CCCceeeecccCCcHHhhhhcccccEEEE-ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH
Confidence                      23556666555555433334566787773 444556677788888999999999999999998542    


Q ss_pred             ---HHHHHHHHh-cCCeEEE
Q 027659          188 ---HEQMLQMWK-SNFNVKL  203 (220)
Q Consensus       188 ---~~~f~~~~~-~~f~v~~  203 (220)
                         ++.-.+.++ .+|++.+
T Consensus       192 ~~vf~~ev~kL~~~~f~i~e  211 (231)
T COG1889         192 EEVFKDEVEKLEEGGFEILE  211 (231)
T ss_pred             HHHHHHHHHHHHhcCceeeE
Confidence               333334443 4677643

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=96.93  E-value=0.0071  Score=50.39  Aligned_cols=146  Identities=22%  Similarity=0.231  Sum_probs=91.8

Q ss_pred             cccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhh
Q 027659           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRI  112 (220)
Q Consensus        37 ~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (220)
                      .+++.+..++.++..          ...|.+|||+.||.|-=+..+|.. +  ..|++.|. ..-+..++.|+...+.  
T Consensus        68 ~vQd~sS~l~~~~L~----------~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~--  135 (283)
T PF01189_consen   68 YVQDESSQLVALALD----------PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV--  135 (283)
T ss_dssp             EEHHHHHHHHHHHHT----------TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT---
T ss_pred             Eeccccccccccccc----------ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC--
Confidence            356666666555542          337788999999999888888865 2  47999998 5688999999988775  


Q ss_pred             ccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC-------CC---------------ChHHHHHHHHHh
Q 027659          113 SQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA-------EH---------------LLEPLLQTIFAL  169 (220)
Q Consensus       113 ~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~-------~~---------------~~~~l~~~l~~~  169 (220)
                                .++.....|-..... ......||.|+.-.+ =.       ++               ....+++...++
T Consensus       136 ----------~~v~~~~~D~~~~~~-~~~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~  204 (283)
T PF01189_consen  136 ----------FNVIVINADARKLDP-KKPESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKL  204 (283)
T ss_dssp             ----------SSEEEEESHHHHHHH-HHHTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHC
T ss_pred             ----------ceEEEEeeccccccc-cccccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHh
Confidence                      466666533322211 112346999988554 11       11               123577778888


Q ss_pred             h----CCCcEEEEEEEecCc----hHHHHHHHHHhcCCeEEEeeC
Q 027659          170 S----GPKTTILLGYEIRST----SVHEQMLQMWKSNFNVKLVPK  206 (220)
Q Consensus       170 l----~~~g~~~i~~~~r~~----~~~~~f~~~~~~~f~v~~v~~  206 (220)
                      +    +|||+++.+...-.+    .+.+.|++.. ..|++..+..
T Consensus       205 ~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~-~~~~l~~~~~  248 (283)
T PF01189_consen  205 LNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRH-PDFELVPIPL  248 (283)
T ss_dssp             EHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHS-TSEEEECCES
T ss_pred             hcccccCCCeEEEEeccHHHHHHHHHHHHHHHhC-CCcEEEeccc
Confidence            9    999998877643322    2345555432 2455554443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=96.92  E-value=0.059  Score=44.29  Aligned_cols=104  Identities=12%  Similarity=-0.008  Sum_probs=65.5

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhC---CeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      +...|.+|||-|+|+|.++.++++.-   .+++-.|+.+ -.+.+.+-.+..+.           .+++.+..-|.....
T Consensus       102 ~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----------~~~vt~~hrDVc~~G  170 (314)
T KOG2915|consen  102 EIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----------GDNVTVTHRDVCGSG  170 (314)
T ss_pred             cCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----------CcceEEEEeecccCC
Confidence            34578999999999999999999863   3688889843 33444445555554           578888887765543


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ... ....+|.|+.--+    ..-..+-.+...|+.+|.-++++
T Consensus       171 F~~-ks~~aDaVFLDlP----aPw~AiPha~~~lk~~g~r~csF  209 (314)
T KOG2915|consen  171 FLI-KSLKADAVFLDLP----APWEAIPHAAKILKDEGGRLCSF  209 (314)
T ss_pred             ccc-cccccceEEEcCC----ChhhhhhhhHHHhhhcCceEEec
Confidence            221 2467888886544    11122233334666666444433

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=96.87  E-value=0.0096  Score=48.89  Aligned_cols=122  Identities=17%  Similarity=0.165  Sum_probs=80.5

Q ss_pred             CCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           60 PSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..++.|+.|+=+| ---+.|+++|.-|  .+|..+|+++ .+....+-++.-+.            .+++...+|..++.
T Consensus       148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~------------~~ie~~~~Dlr~pl  214 (354)
T COG1568         148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY------------NNIEAFVFDLRNPL  214 (354)
T ss_pred             ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc------------cchhheeehhcccC
Confidence            3677899999999 5678888888665  3599999976 88888888887765            46888888877664


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhC-CC--cEEEEEEEecCchHHHHHHHHH
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSG-PK--TTILLGYEIRSTSVHEQMLQMW  195 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~-~~--g~~~i~~~~r~~~~~~~f~~~~  195 (220)
                      +. ...++||+.+.-+++-...+..++..=-..|+ +|  |.+.++....+-..+..+.+.+
T Consensus       215 pe-~~~~kFDvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~eiQr~l  275 (354)
T COG1568         215 PE-DLKRKFDVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREIQRIL  275 (354)
T ss_pred             hH-HHHhhCCeeecCchhhHHHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHHHHHH
Confidence            22 23579999887666555555666554444454 44  4444544333322344444433

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.75  E-value=0.0069  Score=52.14  Aligned_cols=102  Identities=18%  Similarity=0.191  Sum_probs=69.9

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHH-HHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLL-KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~-~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ...+..++++|||.|-+....+... +.+++.|+ +.-+... ..+...+ +           ..+..+...+...   .
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~-l-----------~~k~~~~~~~~~~---~  172 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAY-L-----------DNKCNFVVADFGK---M  172 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHH-h-----------hhhcceehhhhhc---C
Confidence            3455689999999999999999765 67999998 3322222 2222222 1           1122333322222   2


Q ss_pred             cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEE
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i  178 (220)
                      +..+..||.+-+.+. -+......+...+.+.++|||.+..
T Consensus       173 ~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~  213 (364)
T KOG1269|consen  173 PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIV  213 (364)
T ss_pred             CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEe
Confidence            345789999999999 7777799999999999999998775

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.70  E-value=0.00024  Score=49.99  Aligned_cols=96  Identities=11%  Similarity=0.121  Sum_probs=36.0

Q ss_pred             EEeCCcccHHHHHHHHh---C--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-cccc-
Q 027659           69 IELGAGCGVAGFGMALL---G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV-  141 (220)
Q Consensus        69 LELGcG~G~~~l~la~~---g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~~~-  141 (220)
                      ||+|+..|..++.+++.   +  .+++++|..+..+..+++++..+.           ..++++...   +... ++.. 
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~-----------~~~~~~~~g---~s~~~l~~~~   66 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGL-----------SDRVEFIQG---DSPDFLPSLP   66 (106)
T ss_dssp             --------------------------EEEESS------------GGG------------BTEEEEES----THHHHHHHH
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCC-----------CCeEEEEEc---CcHHHHHHcC
Confidence            79999999888777743   2  269999973323344455544433           346777773   3321 1112 


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEE
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i  178 (220)
                      .++||+|+.-..+..+....-+..+...|+|||.+++
T Consensus        67 ~~~~dli~iDg~H~~~~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   67 DGPIDLIFIDGDHSYEAVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             H--EEEEEEES---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            3789999865543334455566677777899998776

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.64  E-value=0.0082  Score=53.12  Aligned_cols=118  Identities=18%  Similarity=0.266  Sum_probs=72.5

Q ss_pred             CcEEEeCCcccHHHHHHHHhCC---eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ..|+|..+|.|-.+.++.....   .|+-++.+..+..+-    .-++               --..+||.+..+  .-+
T Consensus       367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~~~ntL~vIy----dRGL---------------IG~yhDWCE~fs--TYP  425 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVSGPNTLPVIY----DRGL---------------IGVYHDWCEAFS--TYP  425 (506)
T ss_pred             eeeeeecccccHHHHHhccCCceEEEecccCCCCcchhhh----hccc---------------chhccchhhccC--CCC
Confidence            3699999999966666655432   244443333333321    1222               334678876643  357


Q ss_pred             CCccEEEEecC---CC-CCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEeeCC
Q 027659          143 PPFDYIIGTDV---YA-EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVPKA  207 (220)
Q Consensus       143 ~~fD~V~~~d~---y~-~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v~~~  207 (220)
                      .+||+|-++.+   |. .-.+..++-.+.+.|+|+|.++|-..   .++..+..+.++. .+++..+..+
T Consensus       426 RTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~---~~vl~~v~~i~~~lrW~~~~~d~e  492 (506)
T PF03141_consen  426 RTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDT---VDVLEKVKKIAKSLRWEVRIHDTE  492 (506)
T ss_pred             cchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEecc---HHHHHHHHHHHHhCcceEEEEecC
Confidence            89999999988   32 33578999999999999999998322   2233343333332 4555555443

; GO: 0008168 methyltransferase activity

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.51  E-value=0.0094  Score=49.45  Aligned_cols=40  Identities=28%  Similarity=0.335  Sum_probs=34.3

Q ss_pred             cEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHH
Q 027659           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE  106 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~  106 (220)
                      +++||-||.|..++.+...|.+ |.++|. +.+++..+.|..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~   43 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP   43 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC
Confidence            6999999999999999999998 778998 568888877753

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.38  E-value=0.16  Score=44.02  Aligned_cols=137  Identities=16%  Similarity=0.176  Sum_probs=89.5

Q ss_pred             CeEEEEEeCCCCcc-ccccccchHH-HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhh
Q 027659           20 GHQLQFSQDPNSKH-LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEV   97 (220)
Q Consensus        20 ~~~~~i~~~~~~~~-~g~~~W~~s~-~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~   97 (220)
                      ...++++..|.... .-..-|+++- +|.+++...         ...+ +||=|+=.-|.++..++..+.. ..+|---+
T Consensus         8 ~~~~~l~r~p~~~~~~~l~awdaade~ll~~~~~~---------~~~~-~~~i~nd~fGal~~~l~~~~~~-~~~ds~~~   76 (378)
T PRK15001          8 FRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDT---------EIRG-PVLILNDAFGALSCALAEHKPY-SIGDSYIS   76 (378)
T ss_pred             CceeEEEECCCCCCcCcccccccHHHHHHHHHhhc---------ccCC-CEEEEcCchhHHHHHHHhCCCC-eeehHHHH
Confidence            37788888886544 4589999986 334454432         1223 7999999999999999965543 34674334


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEE
Q 027659           98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      -..++.|++.|+..          ...++....       .+..++.+|+|+.--+=.....+.++..+...+.+++.++
T Consensus        77 ~~~~~~n~~~n~~~----------~~~~~~~~~-------~~~~~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii  139 (378)
T PRK15001         77 ELATRENLRLNGID----------ESSVKFLDS-------TADYPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRII  139 (378)
T ss_pred             HHHHHHHHHHcCCC----------cccceeecc-------cccccCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            46778899999762          122333321       1113567999885544223446677788888899999987


Q ss_pred             EEEEecC
Q 027659          178 LGYEIRS  184 (220)
Q Consensus       178 i~~~~r~  184 (220)
                      .+.+.+.
T Consensus       140 ~g~~~k~  146 (378)
T PRK15001        140 AGAKARD  146 (378)
T ss_pred             EEEecCC
Confidence            7666554

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.36  E-value=0.0082  Score=50.33  Aligned_cols=96  Identities=21%  Similarity=0.217  Sum_probs=60.7

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..|.+||=+|||+ |++++..|+ .|+ +|+++|. +.-++.+++ +   +..            .+...... .....+
T Consensus       168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga~------------~~~~~~~~-~~~~~~  230 (354)
T KOG0024|consen  168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GAT------------VTDPSSHK-SSPQEL  230 (354)
T ss_pred             ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CCe------------EEeecccc-ccHHHH
Confidence            4688999999998 999999997 477 5999998 568888876 2   210            11111000 000100


Q ss_pred             ----c--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          139 ----K--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       139 ----~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                          .  .....||+.+-+     +-.+.-+++.-..++.+|.+.++.
T Consensus       231 ~~~v~~~~g~~~~d~~~dC-----sG~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  231 AELVEKALGKKQPDVTFDC-----SGAEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             HHHHHhhccccCCCeEEEc-----cCchHHHHHHHHHhccCCEEEEec
Confidence                0  112346666543     446677777788899999987775

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.33  E-value=0.0094  Score=47.73  Aligned_cols=80  Identities=15%  Similarity=0.190  Sum_probs=50.3

Q ss_pred             CCCcEEEeCCcccH-HHHHHH-HhCCeEEEecc-hhhHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeeeCCCCC--
Q 027659           64 KGKRVIELGAGCGV-AGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDH--  137 (220)
Q Consensus        64 ~~~~vLELGcG~G~-~~l~la-~~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~ldw~~~~~--  137 (220)
                      ++.++||+|.|.-. ..+.-. ..|-+-+++|+ +.++..++.++..| ++           ...|+...-  .+...  
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l-----------~~~I~lr~q--k~~~~if  144 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGL-----------ERAIRLRRQ--KDSDAIF  144 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcch-----------hhheeEEec--cCccccc
Confidence            56689999888532 222212 34678999999 56999999999998 44           233444321  11111  


Q ss_pred             --ccccCCCccEEEEecCCCC
Q 027659          138 --IKAVAPPFDYIIGTDVYAE  156 (220)
Q Consensus       138 --~~~~~~~fD~V~~~d~y~~  156 (220)
                        .....+.||+++||++|+.
T Consensus       145 ~giig~nE~yd~tlCNPPFh~  165 (292)
T COG3129         145 NGIIGKNERYDATLCNPPFHD  165 (292)
T ss_pred             cccccccceeeeEecCCCcch
Confidence              1112578999999999443

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.32  E-value=0.0076  Score=50.89  Aligned_cols=81  Identities=23%  Similarity=0.195  Sum_probs=57.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHH-------HHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLP-------LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~-------~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~  134 (220)
                      ..|+-|.|=-.|||.+-+.+|..|+-|+++|++. ++.       .++.|.++.+..          ..-+.+...|..+
T Consensus       207 ~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~----------~~fldvl~~D~sn  276 (421)
T KOG2671|consen  207 KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----------SQFLDVLTADFSN  276 (421)
T ss_pred             CCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCc----------chhhheeeecccC
Confidence            4688999999999999999999999999999854 554       345555555531          2234555656555


Q ss_pred             CCCccccCCCccEEEEecCCC
Q 027659          135 EDHIKAVAPPFDYIIGTDVYA  155 (220)
Q Consensus       135 ~~~~~~~~~~fD~V~~~d~y~  155 (220)
                      ..-.  ....||.|+|-++|.
T Consensus       277 ~~~r--sn~~fDaIvcDPPYG  295 (421)
T KOG2671|consen  277 PPLR--SNLKFDAIVCDPPYG  295 (421)
T ss_pred             cchh--hcceeeEEEeCCCcc
Confidence            4322  256899999888765

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.28  E-value=0.021  Score=48.79  Aligned_cols=101  Identities=21%  Similarity=0.297  Sum_probs=70.7

Q ss_pred             CCcEEEeCCcccHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           65 GKRVIELGAGCGVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..+|+|-=||+|+=|+-.|. .+. +|++-|+ |++++++++|++.|..            .+......|-..  -+...
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------------~~~~v~n~DAN~--lm~~~  118 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------------EDAEVINKDANA--LLHEL  118 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc------------ccceeecchHHH--HHHhc
Confidence            67899999999999999986 455 7999999 7799999999999932            233333321111  01122


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ...||+|=. |+|..  ..++++...+..+.+|.+.++.+.
T Consensus       119 ~~~fd~IDi-DPFGS--PaPFlDaA~~s~~~~G~l~vTATD  156 (380)
T COG1867         119 HRAFDVIDI-DPFGS--PAPFLDAALRSVRRGGLLCVTATD  156 (380)
T ss_pred             CCCccEEec-CCCCC--CchHHHHHHHHhhcCCEEEEEecc
Confidence            468898732 22432  457888888888889988887653

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.21  E-value=0.06  Score=46.09  Aligned_cols=109  Identities=16%  Similarity=0.083  Sum_probs=72.6

Q ss_pred             CCcEEEeCCcccHHHHHHHHhC-C-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           65 GKRVIELGAGCGVAGFGMALLG-C-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g-~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      -.+||=||-|-|+..-.+.+.- . +++.+|. |+|++.++.|.-....     +.++-..+++++..-|-.+.  +...
T Consensus       290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~-----N~~sf~dpRv~Vv~dDAf~w--lr~a  362 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRAL-----NQGSFSDPRVTVVNDDAFQW--LRTA  362 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhh-----ccCCccCCeeEEEeccHHHH--HHhh
Confidence            4579999999999998888764 3 6999998 7899999976644322     11112345777776433222  1123


Q ss_pred             CCCccEEEEecC-CCCCC-----hHHHHHHHHHhhCCCcEEEEEE
Q 027659          142 APPFDYIIGTDV-YAEHL-----LEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~-----~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .+.||.||.--+ -....     -.++-..+++.|+++|.+++-.
T Consensus       363 ~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         363 ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence            468999996544 22222     3456667778899999988743

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.16  E-value=0.0084  Score=50.84  Aligned_cols=105  Identities=13%  Similarity=0.241  Sum_probs=62.6

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCC---eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-  136 (220)
                      .++..++|||+|.|.|....++-..-.   .++.++.+.++...-.-+..|.                .....+|.... 
T Consensus       110 ~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv----------------~t~~td~r~s~v  173 (484)
T COG5459         110 PDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENV----------------STEKTDWRASDV  173 (484)
T ss_pred             CCcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhc----------------ccccCCCCCCcc
Confidence            567778899999999876555543322   3566665444444444444432                22224443322 


Q ss_pred             -----CccccCCCccEEEEecC-CCCC---ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          137 -----HIKAVAPPFDYIIGTDV-YAEH---LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       137 -----~~~~~~~~fD~V~~~d~-y~~~---~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                           +++ ....|++|+..+- ....   .+...++.+..++.|||.++|+.+.
T Consensus       174 t~dRl~lp-~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG  227 (484)
T COG5459         174 TEDRLSLP-AADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG  227 (484)
T ss_pred             chhccCCC-ccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence                 111 2356888877775 3332   2445777788889999999998754

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.98  E-value=0.081  Score=39.25  Aligned_cols=104  Identities=17%  Similarity=0.109  Sum_probs=60.9

Q ss_pred             eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc-cC-CCccEEEEecCCCCCC------
Q 027659           88 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VA-PPFDYIIGTDVYAEHL------  158 (220)
Q Consensus        88 ~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-~~-~~fD~V~~~d~y~~~~------  158 (220)
                      +|++.|+ +++++.+++.++.++.           ..++++..-   .-+.+.. .+ +++|.++-|--|-+..      
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----------~~~v~li~~---sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T   66 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGL-----------EDRVTLILD---SHENLDEYIPEGPVDAAIFNLGYLPGGDKSITT   66 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT------------GSGEEEEES----GGGGGGT--S--EEEEEEEESB-CTS-TTSB-
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCC-----------CCcEEEEEC---CHHHHHhhCccCCcCEEEEECCcCCCCCCCCCc
Confidence            5899998 6799999999998876           346777762   2222221 23 3799998875454321      


Q ss_pred             -hH---HHHHHHHHhhCCCcEEEEEEEecCchH------HHHHHHHHh-cCCeEEEee
Q 027659          159 -LE---PLLQTIFALSGPKTTILLGYEIRSTSV------HEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       159 -~~---~l~~~l~~~l~~~g~~~i~~~~r~~~~------~~~f~~~~~-~~f~v~~v~  205 (220)
                       .+   .-++.+.++|+|||.+.++....+++.      ...|++.+. +.|.|....
T Consensus        67 ~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~~~~  124 (140)
T PF06962_consen   67 KPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVLKYQ  124 (140)
T ss_dssp             -HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEEEEE
T ss_pred             CcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEEEEE
Confidence             22   344455566899998887765544432      334555443 467776553

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.94  E-value=0.013  Score=41.18  Aligned_cols=30  Identities=20%  Similarity=0.247  Sum_probs=27.2

Q ss_pred             CCcEEEeCCcccHHHHHHHHhCCeEEEecc
Q 027659           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ   94 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g~~v~~~D~   94 (220)
                      ....+|||||+|++--.|.+-|.+=.++|.
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~   88 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDA   88 (112)
T ss_pred             CCceEEccCCchHHHHHHHhCCCCcccccc
Confidence            446999999999999999999999889996

; GO: 0008168 methyltransferase activity

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=95.94  E-value=0.015  Score=50.37  Aligned_cols=70  Identities=23%  Similarity=0.307  Sum_probs=54.4

Q ss_pred             cccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhh
Q 027659           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS  110 (220)
Q Consensus        33 ~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~  110 (220)
                      .+|-.-|.+-+..-+--.+.        -...|..|.|+-||.|-.++.+++.+..|++-|. +++++.++.|+..|..
T Consensus       226 DfskVYWnsRL~~Eherlsg--------~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv  296 (495)
T KOG2078|consen  226 DFSKVYWNSRLSHEHERLSG--------LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKV  296 (495)
T ss_pred             ecceEEeeccchhHHHHHhh--------ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhcccccc
Confidence            45666798544333322221        1225678999999999999999999999999997 8999999999999987

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=95.93  E-value=0.1  Score=47.08  Aligned_cols=42  Identities=36%  Similarity=0.479  Sum_probs=34.0

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHH
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR  103 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~  103 (220)
                      ...+.+|+=+|||. |+.++..|+ +|++|+++|. ++.++.++.
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            34688999999998 999998886 5999999998 556665544

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=95.83  E-value=0.05  Score=46.11  Aligned_cols=93  Identities=14%  Similarity=0.043  Sum_probs=64.0

Q ss_pred             CcEEEeCCcccHHHHHHHHhCCeEEEecc--hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      ...+|+|.|.|.+.-.+...-.+|-+++.  +.+++.+. +.. .               .|.....|--..      ..
T Consensus       179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~-~~~-~---------------gV~~v~gdmfq~------~P  235 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAP-YLA-P---------------GVEHVAGDMFQD------TP  235 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhh-hhc-C---------------Ccceeccccccc------CC
Confidence            57999999999988888776666777775  44444333 322 1               133333222111      23


Q ss_pred             CccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          144 PFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       144 ~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +-|+|+.--+ ++  +++..++++.+++.|+|+|.+++...
T Consensus       236 ~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~  276 (342)
T KOG3178|consen  236 KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN  276 (342)
T ss_pred             CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            4579999998 44  55688999999999999999998865

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=95.83  E-value=0.078  Score=44.44  Aligned_cols=114  Identities=18%  Similarity=0.215  Sum_probs=65.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHH--HHHHHHHHhhhhh----------------ccCCC----CC-
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLP--LLKRNVEWNTSRI----------------SQMNP----GS-  119 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~--~~~~n~~~n~~~~----------------~~~~~----~~-  119 (220)
                      ...+||==|||.|.++.-+|..|.++-+-+.+. |+=  ....|.-.+....                .|.+|    +. 
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            456899999999999999999999988887754 332  2222222211110                01111    00 


Q ss_pred             -----CCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEE
Q 027659          120 -----DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       120 -----~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                           ......+....|+.+........+.||+|+.+-- =-...+-+.+++|..+|+|||+-+
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi  293 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI  293 (369)
T ss_pred             ccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence                 0111122233333222222222357999987632 223457789999999999999765

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=95.45  E-value=0.012  Score=48.85  Aligned_cols=81  Identities=20%  Similarity=0.137  Sum_probs=57.2

Q ss_pred             CCCcEEEeCCcccHHHH-HHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGF-GMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l-~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+..|.||=+|.|..++ .+-..||+ |.+.|. |.+++.+++|++.|+..           .++.....|    ...+.
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~-----------~r~~i~~gd----~R~~~  258 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVM-----------DRCRITEGD----NRNPK  258 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchH-----------HHHHhhhcc----ccccC
Confidence            45689999999999999 77788987 999998 77999999999999762           233333322    12223


Q ss_pred             cCCCccEEEEecC-CCCCCh
Q 027659          141 VAPPFDYIIGTDV-YAEHLL  159 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~  159 (220)
                      +....|-|...-. -....+
T Consensus       259 ~~~~AdrVnLGLlPSse~~W  278 (351)
T KOG1227|consen  259 PRLRADRVNLGLLPSSEQGW  278 (351)
T ss_pred             ccccchheeeccccccccch
Confidence            4566777776555 444444

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.38  E-value=0.15  Score=40.29  Aligned_cols=110  Identities=9%  Similarity=0.048  Sum_probs=63.7

Q ss_pred             CcEEEeCCcccHHHHHHHHhCCe--EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc--
Q 027659           66 KRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA--  140 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~--  140 (220)
                      -.+.|||||.|-+-+.++.+-.+  +++.++ ..+-+..++.+..-...     +......++.+....--..  ++.  
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~-----~a~~~~~ni~vlr~namk~--lpn~f  134 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRT-----SAEGQYPNISVLRTNAMKF--LPNFF  134 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcc-----ccccccccceeeeccchhh--ccchh
Confidence            46999999999888888877664  788887 44777777776654321     1111123444443211111  110  


Q ss_pred             --cCCCccEEEEecC-CCCC------ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          141 --VAPPFDYIIGTDV-YAEH------LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       141 --~~~~fD~V~~~d~-y~~~------~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                        ..-.-++.+--|+ +...      .-..++.....+|++||.+|.....
T Consensus       135 ~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv  185 (249)
T KOG3115|consen  135 EKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDV  185 (249)
T ss_pred             hhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeH
Confidence              0112244444555 4322      1345777788889999999986543

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.29  E-value=0.046  Score=43.19  Aligned_cols=54  Identities=24%  Similarity=0.268  Sum_probs=39.1

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHH
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR  103 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~  103 (220)
                      -.-|.+.|....        ..+|..|||--||+|..++++.++|.+.+++|+ ++.++.+++
T Consensus       177 P~~l~~~lI~~~--------t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  177 PVELIERLIKAS--------TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -HHHHHHHHHHH--------S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             CHHHHHHHHHhh--------hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            455666665542        336789999999999999999999999999999 557777653

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=95.28  E-value=0.12  Score=39.45  Aligned_cols=114  Identities=15%  Similarity=0.109  Sum_probs=75.8

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHH-HHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGM-ALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~l-a~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      ++..|++.+.+..         ..+.+|+=|||=+-...+.- ...+.++++.|++.  +..     ..           
T Consensus        11 T~~~l~~~l~~~~---------~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~--RF~-----~~-----------   63 (162)
T PF10237_consen   11 TAEFLARELLDGA---------LDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDR--RFE-----QF-----------   63 (162)
T ss_pred             HHHHHHHHHHHhc---------CCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecc--hHH-----hc-----------
Confidence            4667777777532         24578999988764444433 11244699999865  111     11           


Q ss_pred             CCCCceEEEEeeeCCCCCcc-ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          120 DLLGSIQAVELDWGNEDHIK-AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       120 ~~~~~v~~~~ldw~~~~~~~-~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                        .++ .+.-.|...+..++ ...++||+|++-++ ...+.......+++.++++++.++++...+.
T Consensus        64 --~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~~  127 (162)
T PF10237_consen   64 --GGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEEM  127 (162)
T ss_pred             --CCc-ceEECCCCChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHHH
Confidence              123 56666666665543 23579999999988 6677778889999999999999988776543

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.05  E-value=0.2  Score=39.04  Aligned_cols=114  Identities=11%  Similarity=0.026  Sum_probs=63.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhC-C--eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEE-EeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLG-C--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-ELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g-~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~-~ldw~~~~~~  138 (220)
                      .++.+|||+||-.|..+..+-++. .  .|.++|+-...+.                      .-+.+. ..|..++...
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~----------------------~Ga~~i~~~dvtdp~~~  125 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPP----------------------EGATIIQGNDVTDPETY  125 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCC----------------------CCcccccccccCCHHHH
Confidence            367899999999999999998763 3  4999996221100                      001111 1133333210


Q ss_pred             -----cccCCCccEEEEecCCC-----CCChHHHHHHHHHh-------hCCCcEEEEEEEecCchHHHHHHHHHhcCCe
Q 027659          139 -----KAVAPPFDYIIGTDVYA-----EHLLEPLLQTIFAL-------SGPKTTILLGYEIRSTSVHEQMLQMWKSNFN  200 (220)
Q Consensus       139 -----~~~~~~fD~V~~~d~y~-----~~~~~~l~~~l~~~-------l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~  200 (220)
                           ..+....|+|++-...+     .-++..++..+..+       +.|+|.++.-.-  ..+....|...+.+.|+
T Consensus       126 ~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w--~g~e~~~l~r~l~~~f~  202 (232)
T KOG4589|consen  126 RKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLW--DGSEEALLQRRLQAVFT  202 (232)
T ss_pred             HHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEe--cCCchHHHHHHHHHHhh
Confidence                 11356788887633222     23344444444332       579998776433  33334566666666553

>PRK11524 putative methyltransferase; Provisional

Probab=94.99  E-value=0.085  Score=43.95  Aligned_cols=46  Identities=20%  Similarity=0.134  Sum_probs=40.4

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHH
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW  107 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~  107 (220)
                      ..+|..|||--||+|..++++.++|-+.+++|+ ++.++.+++.+..
T Consensus       206 S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        206 SNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            347889999999999999999999999999998 6688888887753

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=94.83  E-value=0.096  Score=43.08  Aligned_cols=106  Identities=16%  Similarity=0.121  Sum_probs=60.4

Q ss_pred             cEEEeCCccc--HHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           67 RVIELGAGCG--VAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        67 ~vLELGcG~G--~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..||||||.-  -..-..|+.   .++|+-+|. |-++...+.-+..|.            .....+...|..++..+..
T Consensus        71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------~g~t~~v~aD~r~p~~iL~  138 (267)
T PF04672_consen   71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------RGRTAYVQADLRDPEAILA  138 (267)
T ss_dssp             EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------TSEEEEEE--TT-HHHHHC
T ss_pred             eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------CccEEEEeCCCCCHHHHhc
Confidence            6999999952  123344433   578999998 557777766555442            1347888877776653211


Q ss_pred             ---cC-----CCccEEEEecC-CC---CCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          141 ---VA-----PPFDYIIGTDV-YA---EHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       141 ---~~-----~~fD~V~~~d~-y~---~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                         ..     .+.=.|+...+ ++   .+....++..+...|.||..+.|++....
T Consensus       139 ~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d  194 (267)
T PF04672_consen  139 HPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD  194 (267)
T ss_dssp             SHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred             CHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence               11     22335566666 33   24688999999999999999999987654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=94.76  E-value=0.17  Score=40.89  Aligned_cols=86  Identities=22%  Similarity=0.310  Sum_probs=42.3

Q ss_pred             CcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659           66 KRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~  144 (220)
                      .+|||.-+|.|.-++.+|..|++|++++.+. +-.+++.-++.......   .......++++...|-.+.  +......
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~---~~~~~~~ri~l~~~d~~~~--L~~~~~s  151 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPE---LLAEAMRRIQLIHGDALEY--LRQPDNS  151 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTT---THHHHHHHEEEEES-CCCH--CCCHSS-
T ss_pred             CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcH---hHHHHHhCCEEEcCCHHHH--HhhcCCC
Confidence            3899999999999999999999999999854 33444433332211000   0000013567766443332  2234679


Q ss_pred             ccEEEEecCCCC
Q 027659          145 FDYIIGTDVYAE  156 (220)
Q Consensus       145 fD~V~~~d~y~~  156 (220)
                      ||+|..-++|..
T Consensus       152 ~DVVY~DPMFp~  163 (234)
T PF04445_consen  152 FDVVYFDPMFPE  163 (234)
T ss_dssp             -SEEEE--S---
T ss_pred             CCEEEECCCCCC
Confidence            999998666543

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=94.72  E-value=0.64  Score=37.73  Aligned_cols=147  Identities=14%  Similarity=0.095  Sum_probs=77.5

Q ss_pred             eecCeEEEEEeCCCCccccccccch-HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHH-hCCe--EEEe
Q 027659           17 EVLGHQLQFSQDPNSKHLGTTVWDA-SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCN--VITT   92 (220)
Q Consensus        17 ~~~~~~~~i~~~~~~~~~g~~~W~~-s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~-~g~~--v~~~   92 (220)
                      .+.|.+=.+.+.+ ....-.++|.. -.-||.-|.--..    +-....|.+||=||+++|..---.+. .|.+  |+++
T Consensus       113 ~vYgEkRisv~~~-~~kvEyRVWnPfrSKLAA~I~gGvd----nihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAV  187 (317)
T KOG1596|consen  113 SVYGEKRISVENE-DGKVEYRVWNPFRSKLAAGILGGVD----NIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAV  187 (317)
T ss_pred             cccCceEEEeecC-CCcEEEEEeChHHHHHHHHhhcCcc----ceeecCCceEEEeeccCCceeehhhcccCCCceEEEE
Confidence            3444443333444 33566789965 2234444442211    12445789999999999864443443 4554  8888


Q ss_pred             cchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhC
Q 027659           93 DQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSG  171 (220)
Q Consensus        93 D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~  171 (220)
                      +.++ +=+.+ -|++.-             ..||-.+.-|..-+......-...|+|++ |+-.++...-+.-....+|+
T Consensus       188 Efs~rsGRdL-~nmAkk-------------RtNiiPIiEDArhP~KYRmlVgmVDvIFa-Dvaqpdq~RivaLNA~~FLk  252 (317)
T KOG1596|consen  188 EFSHRSGRDL-INMAKK-------------RTNIIPIIEDARHPAKYRMLVGMVDVIFA-DVAQPDQARIVALNAQYFLK  252 (317)
T ss_pred             EecccchHHH-HHHhhc-------------cCCceeeeccCCCchheeeeeeeEEEEec-cCCCchhhhhhhhhhhhhhc
Confidence            8743 21111 111111             23555544333222221112335566653 44334445556666677899


Q ss_pred             CCcEEEEEEEec
Q 027659          172 PKTTILLGYEIR  183 (220)
Q Consensus       172 ~~g~~~i~~~~r  183 (220)
                      ++|.++++.+.-
T Consensus       253 ~gGhfvisikan  264 (317)
T KOG1596|consen  253 NGGHFVISIKAN  264 (317)
T ss_pred             cCCeEEEEEecc
Confidence            999999987643

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=94.71  E-value=0.16  Score=43.38  Aligned_cols=93  Identities=27%  Similarity=0.255  Sum_probs=55.1

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..+|++|+=.|+|- |..++.+|+ .|++|+++|.+ +-++.+++--+                 . .+  .++.+.+..
T Consensus       164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-----------------d-~~--i~~~~~~~~  223 (339)
T COG1064         164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-----------------D-HV--INSSDSDAL  223 (339)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-----------------c-EE--EEcCCchhh
Confidence            34688999999983 667777776 79999999984 45555543211                 1 11  222222222


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ....+.||+|+..-.      ...+....++|+++|++.+..
T Consensus       224 ~~~~~~~d~ii~tv~------~~~~~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         224 EAVKEIADAIIDTVG------PATLEPSLKALRRGGTLVLVG  259 (339)
T ss_pred             HHhHhhCcEEEECCC------hhhHHHHHHHHhcCCEEEEEC
Confidence            222334999986533      333444455677888776653

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=94.70  E-value=0.04  Score=46.24  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=33.4

Q ss_pred             cEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHH
Q 027659           67 RVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE  106 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~  106 (220)
                      +++||-||.|.+++.+.+.|.+ |.++|+ +.+.+..+.|..
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~   43 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP   43 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc
Confidence            6999999999999999999987 778998 568888877754

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=94.58  E-value=0.35  Score=38.27  Aligned_cols=104  Identities=17%  Similarity=0.136  Sum_probs=53.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh------CCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~------g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      +...|+|+|.=.|--.+..|..      ..+|+++|+. ....  +..++...+           ..+|++...|..+.+
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~-----------~~rI~~i~Gds~d~~   98 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPM-----------SPRITFIQGDSIDPE   98 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG---------------TTEEEEES-SSSTH
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccc-----------cCceEEEECCCCCHH
Confidence            5679999999887777766642      2579999982 2111  111111111           368999997766554


Q ss_pred             Ccc---ccCCCcc-EEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 HIK---AVAPPFD-YIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 ~~~---~~~~~fD-~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ...   ......+ +++.-|. +..+....-++....++++|+.+++..
T Consensus        99 ~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD  147 (206)
T PF04989_consen   99 IVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVED  147 (206)
T ss_dssp             HHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred             HHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence            221   1111222 3555666 777777888888999999999888753

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=94.50  E-value=0.16  Score=41.38  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=56.4

Q ss_pred             CCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..+|+|||||.=-+++.....  ++.+++.|+ ..+++.+..-+..-+.             +..+...|.-..    .+
T Consensus       106 p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-------------~~~~~v~Dl~~~----~~  168 (251)
T PF07091_consen  106 PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-------------PHDARVRDLLSD----PP  168 (251)
T ss_dssp             -SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--------------CEEEEEE-TTTS----HT
T ss_pred             CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-------------CcceeEeeeecc----CC
Confidence            568999999987777766654  457999999 5699988877665543             455555443322    13


Q ss_pred             CCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          142 APPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      ....|+.+.-=+ ...  ..--.-++.+..+  ..-.++++++.|+-
T Consensus       169 ~~~~DlaLllK~lp~le~q~~g~g~~ll~~~--~~~~~vVSfPtrSL  213 (251)
T PF07091_consen  169 KEPADLALLLKTLPCLERQRRGAGLELLDAL--RSPHVVVSFPTRSL  213 (251)
T ss_dssp             TSEESEEEEET-HHHHHHHSTTHHHHHHHHS--CESEEEEEEES---
T ss_pred             CCCcchhhHHHHHHHHHHHhcchHHHHHHHh--CCCeEEEecccccc
Confidence            556888886543 100  0001112222222  34577888887764

>PRK13699 putative methylase; Provisional

Probab=94.44  E-value=0.16  Score=40.93  Aligned_cols=46  Identities=13%  Similarity=0.007  Sum_probs=39.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (220)
                      .+|..|||--||+|..++++.+.|.+.+++|+ ++..+.+.+.++..
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999998 56777777766543

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=94.19  E-value=1.8  Score=37.86  Aligned_cols=111  Identities=15%  Similarity=0.128  Sum_probs=70.6

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHH-hC--CeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMAL-LG--CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~-~g--~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+|.||||+-|-.|-=+..+|. ..  ..|++.|.. .-+..++.|+..-+.            .+..+..+|-..+..
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------------~ntiv~n~D~~ef~~  306 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------------TNTIVSNYDGREFPE  306 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------------CceEEEccCcccccc
Confidence            34788999999998655555544 33  358999985 488889999988775            344555554433221


Q ss_pred             ccccCCCccEEEEec-C-C-----CCC----------------ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          138 IKAVAPPFDYIIGTD-V-Y-----AEH----------------LLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d-~-y-----~~~----------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      -. ..++||-|+.-. | -     -+.                ....|+.....++++||+++.+...-..
T Consensus       307 ~~-~~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~  376 (460)
T KOG1122|consen  307 KE-FPGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITV  376 (460)
T ss_pred             cc-cCcccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence            11 234899887533 2 1     111                1345666667778999998877665444

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=94.14  E-value=0.72  Score=40.14  Aligned_cols=19  Identities=16%  Similarity=0.316  Sum_probs=16.1

Q ss_pred             CCcEEEeCCcccHHHHHHH
Q 027659           65 GKRVIELGAGCGVAGFGMA   83 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la   83 (220)
                      ..+|+|+|||+|..++.+.
T Consensus        64 ~~~iaDlGcs~G~ntl~~v   82 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHII   82 (386)
T ss_pred             ceeEEEecCCCCccHHHHH
Confidence            4589999999998887764

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=94.13  E-value=0.045  Score=48.40  Aligned_cols=104  Identities=23%  Similarity=0.225  Sum_probs=71.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~  138 (220)
                      ++.+|||-=|+||+-+|-.|+.  |. +|++-|. +.+++..++|++.|+.           ...++....|....- ..
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----------~~ive~~~~DA~~lM~~~  177 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----------EDIVEPHHSDANVLMYEH  177 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----------hhhcccccchHHHHHHhc
Confidence            5678999999999999999975  33 5999998 5699999999999965           233333332221110 11


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +.....||+|=. |+|...  ..+++...+.++.||.++++.+
T Consensus       178 ~~~~~~FDvIDL-DPyGs~--s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  178 PMVAKFFDVIDL-DPYGSP--SPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             cccccccceEec-CCCCCc--cHHHHHHHHHhhcCCEEEEEec
Confidence            123478998843 335433  4677777788889999988764

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.91  E-value=0.52  Score=35.33  Aligned_cols=45  Identities=13%  Similarity=0.193  Sum_probs=36.5

Q ss_pred             CcEEEeCCcccHHHHHHHHhCC-eEEEecchh-hHHHHHHHHHHhhh
Q 027659           66 KRVIELGAGCGVAGFGMALLGC-NVITTDQIE-VLPLLKRNVEWNTS  110 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~-~v~~~D~~~-~l~~~~~n~~~n~~  110 (220)
                      .+.+|||+|-|.+-+.+++.|. .-++++++. .+...+...-..+.
T Consensus        74 GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~  120 (199)
T KOG4058|consen   74 GKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGC  120 (199)
T ss_pred             CcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhc
Confidence            3799999999999999999995 588999855 77777776655554

>KOG3350 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.89  E-value=0.12  Score=39.69  Aligned_cols=89  Identities=16%  Similarity=0.157  Sum_probs=60.0

Q ss_pred             EEEEeeeCCCCCccc-cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEE
Q 027659          126 QAVELDWGNEDHIKA-VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL  203 (220)
Q Consensus       126 ~~~~ldw~~~~~~~~-~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~  203 (220)
                      +|.-.|...+..++. ...+||+|++-++ ...+-+.+-..+++.+.++.-.++++...+-.+.....+...+-.|..+ 
T Consensus       116 eFvfYDyN~p~dlp~~lk~~fdiivaDPPfL~~eCl~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~~~~sF~Pe-  194 (217)
T KOG3350|consen  116 EFVFYDYNCPLDLPDELKAHFDIIVADPPFLSEECLAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPVLKCSFRPE-  194 (217)
T ss_pred             eeEEeccCCCCCCHHHHHhcccEEEeCCccccchhhhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhhhhccccch-
Confidence            667777777665542 3568999999999 6777788888899999999889988876654433333333333345443 


Q ss_pred             eeCCCCCcccCCC
Q 027659          204 VPKAKESTMWGNP  216 (220)
Q Consensus       204 v~~~~~~~~~~~~  216 (220)
                       +...+...|++.
T Consensus       195 -H~~nLaNeF~cy  206 (217)
T KOG3350|consen  195 -HERNLANEFRCY  206 (217)
T ss_pred             -hhcccccceeEE
Confidence             455666666654

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=93.79  E-value=0.27  Score=41.42  Aligned_cols=58  Identities=12%  Similarity=0.075  Sum_probs=44.1

Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHH
Q 027659           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW  107 (220)
Q Consensus        43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~  107 (220)
                      ++|.+.+.+..       ...+|..++|--+|.|--+..+++.  ..+|++.|. ++++..+++.++.
T Consensus         6 pVll~Evl~~L-------~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~   66 (305)
T TIGR00006         6 SVLLDEVVEGL-------NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD   66 (305)
T ss_pred             chhHHHHHHhc-------CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence            45555555543       2235678999999999999988865  367999998 6799999887764

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=93.63  E-value=0.24  Score=42.13  Aligned_cols=42  Identities=26%  Similarity=0.339  Sum_probs=35.2

Q ss_pred             CCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHH
Q 027659           65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVE  106 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~  106 (220)
                      ..+++||-||.|-+++.+...|.+ +.+.|+ +.+++..+.|..
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~   46 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFP   46 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCC
Confidence            358999999999999999999988 667898 668888777754

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=93.58  E-value=0.067  Score=44.17  Aligned_cols=111  Identities=18%  Similarity=0.184  Sum_probs=66.1

Q ss_pred             cccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhh
Q 027659           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSR  111 (220)
Q Consensus        33 ~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~  111 (220)
                      .+-...||-..-+.+..             -.|..++|.|||.|-....-  -..-+++.|... .+.-+++.   +   
T Consensus        27 ~tr~~~Wp~v~qfl~~~-------------~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~---~---   85 (293)
T KOG1331|consen   27 ATRAAPWPMVRQFLDSQ-------------PTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRS---G---   85 (293)
T ss_pred             ccccCccHHHHHHHhcc-------------CCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccC---C---
Confidence            35567787555443322             24789999999998432211  112477888743 33333221   1   


Q ss_pred             hccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCC---hHHHHHHHHHhhCCCcEEEEE
Q 027659          112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHL---LEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~---~~~l~~~l~~~l~~~g~~~i~  179 (220)
                                 .. ....   .+...++.....||.+++..+ ++-..   -...++.+.+.++|||..++-
T Consensus        86 -----------~~-~~~~---ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvy  142 (293)
T KOG1331|consen   86 -----------GD-NVCR---ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVY  142 (293)
T ss_pred             -----------Cc-eeeh---hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEE
Confidence                       11 1122   223334455789999999888 66443   456788888889999986654

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=93.39  E-value=1  Score=38.49  Aligned_cols=32  Identities=22%  Similarity=0.209  Sum_probs=22.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh------------C------CeEEEecch
Q 027659           64 KGKRVIELGAGCGVAGFGMALL------------G------CNVITTDQI   95 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~------------g------~~v~~~D~~   95 (220)
                      +.-+|+|+||-.|..++.+...            +      ..|+..|+|
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP   65 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLP   65 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-T
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCC
Confidence            4468999999999999987643            1      268899984

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=93.04  E-value=1.9  Score=35.16  Aligned_cols=139  Identities=12%  Similarity=0.124  Sum_probs=91.4

Q ss_pred             cccchH---HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhh
Q 027659           37 TVWDAS---VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRI  112 (220)
Q Consensus        37 ~~W~~s---~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~  112 (220)
                      ++|...   ..|..|+..-.       ....|.+ |..=||+-.++-.+.+..-++.+++. |+=...++.|...     
T Consensus        66 RL~~a~~lpa~l~~yl~~i~-------~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~-----  132 (279)
T COG2961          66 RLWQAADLPAELEPYLDAVR-------QLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAG-----  132 (279)
T ss_pred             HHHhcCCchHHHHHHHHHHH-------HhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCC-----
Confidence            466553   35556665421       2223333 88888887777777776778999998 7766777777662     


Q ss_pred             ccCCCCCCCCCceEEEEee-eCCCCCccccCCCccEEEEecCC-CCCChHHHHHHHHHhhC--CCcEEEEEEEecCchHH
Q 027659          113 SQMNPGSDLLGSIQAVELD-WGNEDHIKAVAPPFDYIIGTDVY-AEHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVH  188 (220)
Q Consensus       113 ~~~~~~~~~~~~v~~~~ld-w~~~~~~~~~~~~fD~V~~~d~y-~~~~~~~l~~~l~~~l~--~~g~~~i~~~~r~~~~~  188 (220)
                               ..++.+...| |......-.+.++=-+|+.-++| ....++.+++++.+.++  ++|+..|=++.......
T Consensus       133 ---------d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~  203 (279)
T COG2961         133 ---------DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIKDRRQI  203 (279)
T ss_pred             ---------CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeecchHHH
Confidence                     3467777644 11111111123445667766664 56679999999999886  68888888888777677


Q ss_pred             HHHHHHHhc
Q 027659          189 EQMLQMWKS  197 (220)
Q Consensus       189 ~~f~~~~~~  197 (220)
                      +.|++.++.
T Consensus       204 ~~f~~~L~~  212 (279)
T COG2961         204 RRFLRALEA  212 (279)
T ss_pred             HHHHHHHhh
Confidence            899888874

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=93.00  E-value=0.27  Score=35.69  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             HHHHHHhhccccCCCCCCCCCCCcEEEeCCcc-cHHHHHHHHhCCeEEEecchh
Q 027659           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC-GVAGFGMALLGCNVITTDQIE   96 (220)
Q Consensus        44 ~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~-G~~~l~la~~g~~v~~~D~~~   96 (220)
                      -+++|+..+.          ...+|+|+|-|. --.+..|+..|..|++||+.+
T Consensus         3 ~~a~~ia~~~----------~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~   46 (127)
T PF03686_consen    3 DFAEYIARLN----------NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINP   46 (127)
T ss_dssp             HHHHHHHHHS-----------SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-
T ss_pred             hHHHHHHHhC----------CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECcc
Confidence            4678887542          334999999997 567788888999999999844

; PDB: 2K4M_A.

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=92.95  E-value=3.3  Score=35.65  Aligned_cols=130  Identities=15%  Similarity=0.067  Sum_probs=69.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC------eEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC------NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~------~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ..|.+|||+-+-.|-=++.+.+...      .|++-|.+. =+..+..-+..-.            ..++.+...+-...
T Consensus       154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~------------~~~~~v~~~~~~~~  221 (375)
T KOG2198|consen  154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP------------SPNLLVTNHDASLF  221 (375)
T ss_pred             CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC------------Ccceeeecccceec
Confidence            4678999999999887766655422      588999733 2333322221110            11222222222221


Q ss_pred             CCc------cccCCCccEEEEecC-CCCCC-----------------------hHHHHHHHHHhhCCCcEEEEEEE----
Q 027659          136 DHI------KAVAPPFDYIIGTDV-YAEHL-----------------------LEPLLQTIFALSGPKTTILLGYE----  181 (220)
Q Consensus       136 ~~~------~~~~~~fD~V~~~d~-y~~~~-----------------------~~~l~~~l~~~l~~~g~~~i~~~----  181 (220)
                      ...      +.....||-|++--+ -.+..                       .-.++..-.++|++||.++.+..    
T Consensus       222 p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnp  301 (375)
T KOG2198|consen  222 PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNP  301 (375)
T ss_pred             cccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCc
Confidence            111      112457888876432 11110                       11355556678899999888764    


Q ss_pred             ecCchHHHHHHHHHhcCCeEEEe
Q 027659          182 IRSTSVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       182 ~r~~~~~~~f~~~~~~~f~v~~v  204 (220)
                      .++..+.+..++.+...+.+..+
T Consensus       302 ieNEaVV~~~L~~~~~~~~lv~~  324 (375)
T KOG2198|consen  302 IENEAVVQEALQKVGGAVELVDV  324 (375)
T ss_pred             hhhHHHHHHHHHHhcCcccceee
Confidence            34444566666666655655444

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=92.80  E-value=0.11  Score=43.76  Aligned_cols=76  Identities=17%  Similarity=0.189  Sum_probs=46.9

Q ss_pred             EEEeCCcccHHHHHHH---H-hCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC---Ccc
Q 027659           68 VIELGAGCGVAGFGMA---L-LGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HIK  139 (220)
Q Consensus        68 vLELGcG~G~~~l~la---~-~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~---~~~  139 (220)
                      =+|||.|+  .++..+   . .+..-++||+.+ .++.++.|+.+|++           ...+.++...--...   ...
T Consensus       106 GiDIgtga--sci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~l-----------ss~ikvV~~~~~ktll~d~~~  172 (419)
T KOG2912|consen  106 GIDIGTGA--SCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNL-----------SSLIKVVKVEPQKTLLMDALK  172 (419)
T ss_pred             eeeccCch--hhhHHhhhchhccceeeeeeccccccchhhcccccccc-----------ccceeeEEecchhhcchhhhc
Confidence            47887775  333333   2 244688999966 89999999999987           344544442111100   011


Q ss_pred             -ccCCCccEEEEecC-CCC
Q 027659          140 -AVAPPFDYIIGTDV-YAE  156 (220)
Q Consensus       140 -~~~~~fD~V~~~d~-y~~  156 (220)
                       ..+..||+.+|+++ |..
T Consensus       173 ~~~e~~ydFcMcNPPFfe~  191 (419)
T KOG2912|consen  173 EESEIIYDFCMCNPPFFEN  191 (419)
T ss_pred             cCccceeeEEecCCchhhc
Confidence             12456999999999 653

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.73  E-value=1.2  Score=37.81  Aligned_cols=95  Identities=22%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..|.+||=.|||. |+.++.+|+ .|+ +|+++|. ++-++.+++    .+..           .-+....-++.   ..
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~-----------~vi~~~~~~~~---~~  229 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGAD-----------KLVNPQNDDLD---HY  229 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCc-----------EEecCCcccHH---HH
Confidence            3678899899976 777777775 477 5889997 555555543    1110           00000000010   11


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ....+.+|+|+-+--     ....+....++++++|.+++..
T Consensus       230 ~~~~g~~D~vid~~G-----~~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        230 KAEKGYFDVSFEVSG-----HPSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             hccCCCCCEEEECCC-----CHHHHHHHHHHhhcCCEEEEEc
Confidence            111235898874311     1235566667889999887654

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=92.55  E-value=0.94  Score=40.27  Aligned_cols=96  Identities=18%  Similarity=0.274  Sum_probs=62.8

Q ss_pred             CcEEEeCCcccHHHHHHHHhCCe-EEEecchh-hHHHHH-HHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGCGVAGFGMALLGCN-VITTDQIE-VLPLLK-RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~-~l~~~~-~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      -++|.+|||.--+..-+-+-|.+ |+.+|++. ++..+. +|+..              .....+...|...   ....+
T Consensus        50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--------------~~~~~~~~~d~~~---l~fed  112 (482)
T KOG2352|consen   50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--------------RPEMQMVEMDMDQ---LVFED  112 (482)
T ss_pred             ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--------------CcceEEEEecchh---ccCCC
Confidence            48999999999888888888886 99999955 555543 33322              2345555544432   33356


Q ss_pred             CCccEEEEecC-----------CCCCChHHHHHHHHHhhCCCcEEEE
Q 027659          143 PPFDYIIGTDV-----------YAEHLLEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       143 ~~fD~V~~~d~-----------y~~~~~~~l~~~l~~~l~~~g~~~i  178 (220)
                      +.||+|+.=..           ++.......+..+.++++++|+.+.
T Consensus       113 ESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s  159 (482)
T KOG2352|consen  113 ESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS  159 (482)
T ss_pred             cceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence            77888776443           2223345566778888999998553

>PRK11524 putative methyltransferase; Provisional

Probab=92.44  E-value=0.25  Score=41.16  Aligned_cols=41  Identities=12%  Similarity=0.118  Sum_probs=31.5

Q ss_pred             CCCccEEEEecCCCCC-----------------ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDVYAEH-----------------LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~-----------------~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      .++||+|+++++|...                 .+..++..+.++|+|+|.+++....
T Consensus        25 ~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~   82 (284)
T PRK11524         25 SESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNST   82 (284)
T ss_pred             cCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCc
Confidence            5689999999985421                 1246888889999999999986544

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.25  E-value=0.95  Score=40.89  Aligned_cols=40  Identities=35%  Similarity=0.485  Sum_probs=30.3

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHH
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK  102 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~  102 (220)
                      ..+.+|+=+|||. |+.++.+++ +|+.|++.|. ++.++.++
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~  204 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ  204 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4567999999997 888887775 5999999997 44544443

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=91.73  E-value=2.5  Score=38.13  Aligned_cols=106  Identities=17%  Similarity=0.109  Sum_probs=64.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHH-hC-----CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee-CCC
Q 027659           64 KGKRVIELGAGCGVAGFGMAL-LG-----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW-GNE  135 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~-~g-----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw-~~~  135 (220)
                      ...+|.|--||+|..-+.+++ .+     ...++.+. +....+++-|+-.++...           ++.....|- .++
T Consensus       186 ~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~-----------~~~i~~~dtl~~~  254 (489)
T COG0286         186 PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEG-----------DANIRHGDTLSNP  254 (489)
T ss_pred             CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCc-----------cccccccccccCC
Confidence            344899999999865555553 22     23788997 668999999999887621           111111100 000


Q ss_pred             CCc-cccCCCccEEEEecCCC-CC-------------------------ChHHHHHHHHHhhCCCcEEEEEE
Q 027659          136 DHI-KAVAPPFDYIIGTDVYA-EH-------------------------LLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       136 ~~~-~~~~~~fD~V~~~d~y~-~~-------------------------~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ... .....+||+|+++++|. ..                         .-..++..+...|+|+|++-+..
T Consensus       255 ~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl  326 (489)
T COG0286         255 KHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL  326 (489)
T ss_pred             cccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence            000 11346799999999843 10                         11467788888889877555443

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=91.58  E-value=3.6  Score=32.82  Aligned_cols=103  Identities=15%  Similarity=0.207  Sum_probs=55.3

Q ss_pred             CCCcEEEeCCccc----HHHHHHHHh--CCeEEEe-cchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-
Q 027659           64 KGKRVIELGAGCG----VAGFGMALL--GCNVITT-DQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-  135 (220)
Q Consensus        64 ~~~~vLELGcG~G----~~~l~la~~--g~~v~~~-D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~-  135 (220)
                      .-+.++|..|+.|    .++|++|..  |.+++++ +..+.+...++.+...+.           ...++|..   ++. 
T Consensus        41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----------~~~vEfvv---g~~~  106 (218)
T PF07279_consen   41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----------SDVVEFVV---GEAP  106 (218)
T ss_pred             cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----------cccceEEe---cCCH
Confidence            4567999976643    334444432  6675554 444455555555554443           23356655   442 


Q ss_pred             CCccccCCCccEEEEecCCCCCChH-HHHHHHHHhhCCCcEEEEEEEecC
Q 027659          136 DHIKAVAPPFDYIIGTDVYAEHLLE-PLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       136 ~~~~~~~~~fD~V~~~d~y~~~~~~-~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      +..-..-...|+++. || ...++. .+++.+.  ++|.|.+++++...+
T Consensus       107 e~~~~~~~~iDF~vV-Dc-~~~d~~~~vl~~~~--~~~~GaVVV~~Na~~  152 (218)
T PF07279_consen  107 EEVMPGLKGIDFVVV-DC-KREDFAARVLRAAK--LSPRGAVVVCYNAFS  152 (218)
T ss_pred             HHHHhhccCCCEEEE-eC-CchhHHHHHHHHhc--cCCCceEEEEecccc
Confidence            222122356888873 23 222333 6666544  678888888876544

The function of this family is unknown.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.58  E-value=0.45  Score=41.41  Aligned_cols=72  Identities=24%  Similarity=0.356  Sum_probs=46.9

Q ss_pred             CcEEEeCCcc-cHHHH-HHHHhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           66 KRVIELGAGC-GVAGF-GMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        66 ~~vLELGcG~-G~~~l-~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ++||=||||. |.... .+|+.+ .+|++.|. .+.++.+..+.                ..++++..+|..+.+.+...
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~----------------~~~v~~~~vD~~d~~al~~l   65 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI----------------GGKVEALQVDAADVDALVAL   65 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc----------------cccceeEEecccChHHHHHH
Confidence            5799999974 43332 234456 57999997 45444333321                23678899888877655444


Q ss_pred             CCCccEEEEecC
Q 027659          142 APPFDYIIGTDV  153 (220)
Q Consensus       142 ~~~fD~V~~~d~  153 (220)
                      -..+|+||..-+
T Consensus        66 i~~~d~VIn~~p   77 (389)
T COG1748          66 IKDFDLVINAAP   77 (389)
T ss_pred             HhcCCEEEEeCC
Confidence            456799999887

>PRK13699 putative methylase; Provisional

Probab=91.23  E-value=0.8  Score=36.87  Aligned_cols=59  Identities=17%  Similarity=0.393  Sum_probs=39.1

Q ss_pred             cCCCccEEEEecCCCC----------------CChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEE
Q 027659          141 VAPPFDYIIGTDVYAE----------------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVK  202 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~----------------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~  202 (220)
                      +++++|+|+..++|+.                +-....+..+.++|+|||.+++....+..   ..+...++ .+|.+.
T Consensus        17 pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~---~~~~~al~~~GF~l~   92 (227)
T PRK13699         17 PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRV---DRFMAAWKNAGFSVV   92 (227)
T ss_pred             CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccH---HHHHHHHHHCCCEEe
Confidence            4678999999988642                11346778888999999988875443322   34555554 377654

>cd08230 glucose_DH Glucose dehydrogenase

Probab=91.11  E-value=1.3  Score=37.80  Aligned_cols=92  Identities=17%  Similarity=0.182  Sum_probs=51.7

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc----hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ----IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~----~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..|.+||=+|+|. |.+++.+|+ .|++|++++.    ++-++.++    ..+.               ..  .++.+..
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~----~~Ga---------------~~--v~~~~~~  229 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE----ELGA---------------TY--VNSSKTP  229 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH----HcCC---------------EE--ecCCccc
Confidence            3678899999986 777777775 5889999885    22333332    2221               11  1111110


Q ss_pred             Cc-cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 HI-KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 ~~-~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .. ......+|+|+-+--     ....+....++++++|.+++..
T Consensus       230 ~~~~~~~~~~d~vid~~g-----~~~~~~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         230 VAEVKLVGEFDLIIEATG-----VPPLAFEALPALAPNGVVILFG  269 (355)
T ss_pred             hhhhhhcCCCCEEEECcC-----CHHHHHHHHHHccCCcEEEEEe
Confidence            00 011346888875422     1235666677889999877654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=91.01  E-value=1.4  Score=38.20  Aligned_cols=114  Identities=14%  Similarity=0.114  Sum_probs=65.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-CC-eEEEecc-hhhHHHHHHHHHHhhh--hhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTS--RISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~--~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+....|||+|.|-+-..+|.. +. +-+|..+ +..-+.+..|...+..  ..-..     ....+.....+..+...
T Consensus       191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk-----~~~~~~~i~gsf~~~~~  265 (419)
T KOG3924|consen  191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGK-----KPNKIETIHGSFLDPKR  265 (419)
T ss_pred             CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCC-----CcCceeecccccCCHHH
Confidence            35668999999998777766654 33 2445443 2222333333332221  11000     12345566655444433


Q ss_pred             ccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          138 IKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ........++|+.+.+ |.++.--.+- .+.+-|++|.+++-.-+.
T Consensus       266 v~eI~~eatvi~vNN~~Fdp~L~lr~~-eil~~ck~gtrIiS~~~L  310 (419)
T KOG3924|consen  266 VTEIQTEATVIFVNNVAFDPELKLRSK-EILQKCKDGTRIISSKPL  310 (419)
T ss_pred             HHHHhhcceEEEEecccCCHHHHHhhH-HHHhhCCCcceEeccccc
Confidence            3334567899999999 8877655554 566667888888765543

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=90.92  E-value=1.5  Score=36.58  Aligned_cols=84  Identities=12%  Similarity=0.019  Sum_probs=49.0

Q ss_pred             CCCcEEEeCCcc-cHHHHHHHH-hCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~-G~~~l~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++.+||=+|||. |+.++.+|+ .|++ |+++|. ++-++.+...    ..              +..     .+.    
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~~--------------i~~-----~~~----  196 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----EV--------------LDP-----EKD----  196 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----cc--------------cCh-----hhc----
Confidence            567899889986 888887775 5887 667776 3333333211    00              000     000    


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                       ....+|+|+-+--     ....+....++++++|++++..
T Consensus       197 -~~~g~Dvvid~~G-----~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       197 -PRRDYRAIYDASG-----DPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             -cCCCCCEEEECCC-----CHHHHHHHHHhhhcCcEEEEEe
Confidence             1346888874321     2345566667888999887653

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.45  E-value=1.1  Score=37.45  Aligned_cols=79  Identities=16%  Similarity=0.211  Sum_probs=56.8

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .++.|+.||==|.|.|+   .++.+|++|++++..|+ .+..+...+.++.++              ++.....|.++.+
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g--------------~~~~y~cdis~~e   99 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG--------------EAKAYTCDISDRE   99 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC--------------ceeEEEecCCCHH
Confidence            56789999999999986   67777888999999998 555555555555443              4677777777765


Q ss_pred             Cc-------cccCCCccEEEEecC
Q 027659          137 HI-------KAVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~-------~~~~~~fD~V~~~d~  153 (220)
                      +.       ...-+..|+++.|.-
T Consensus       100 ei~~~a~~Vk~e~G~V~ILVNNAG  123 (300)
T KOG1201|consen  100 EIYRLAKKVKKEVGDVDILVNNAG  123 (300)
T ss_pred             HHHHHHHHHHHhcCCceEEEeccc
Confidence            42       123467888888764

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=90.41  E-value=0.61  Score=33.28  Aligned_cols=84  Identities=20%  Similarity=0.205  Sum_probs=49.6

Q ss_pred             CcEEEeCCcc-cHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659           66 KRVIELGAGC-GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (220)
Q Consensus        66 ~~vLELGcG~-G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~  144 (220)
                      ++|+|+|-|- =-++-.+++.|..|++||+.+.      ++.                .-+++..-|..++.-.  .-+.
T Consensus        15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~------~a~----------------~g~~~v~DDitnP~~~--iY~~   70 (129)
T COG1255          15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK------TAP----------------EGLRFVVDDITNPNIS--IYEG   70 (129)
T ss_pred             CcEEEEccchHHHHHHHHHHcCCcEEEEecccc------cCc----------------ccceEEEccCCCccHH--HhhC
Confidence            3899999997 3466777888999999998652      111                2356666555554211  1234


Q ss_pred             ccEEEEecCCCCCChHHHHHHHHHhhCC-CcEEEE
Q 027659          145 FDYIIGTDVYAEHLLEPLLQTIFALSGP-KTTILL  178 (220)
Q Consensus       145 fD~V~~~d~y~~~~~~~l~~~l~~~l~~-~g~~~i  178 (220)
                      .|+|.+--+     .+.+...+-.+.+. |.-+||
T Consensus        71 A~lIYSiRp-----ppEl~~~ildva~aVga~l~I  100 (129)
T COG1255          71 ADLIYSIRP-----PPELQSAILDVAKAVGAPLYI  100 (129)
T ss_pred             ccceeecCC-----CHHHHHHHHHHHHhhCCCEEE
Confidence            566555433     55566655555433 334444

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=90.12  E-value=4.3  Score=31.53  Aligned_cols=97  Identities=21%  Similarity=0.276  Sum_probs=48.2

Q ss_pred             cEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHHHH------------HHHhhhhhccCCCCCCCCCceEEEEee
Q 027659           67 RVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRN------------VEWNTSRISQMNPGSDLLGSIQAVELD  131 (220)
Q Consensus        67 ~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n------------~~~n~~~~~~~~~~~~~~~~v~~~~ld  131 (220)
                      +|-=+|.|. |+ .+..+|..|.+|+++|. ++-++.+++-            ++.+..           ..+..+.. |
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~-----------~~~l~~t~-~   69 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVS-----------AGRLRATT-D   69 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHH-----------TTSEEEES-E
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccc-----------cccchhhh-h
Confidence            444567775 54 44455677999999998 4555544321            011100           12333331 1


Q ss_pred             eCCCCCccccCCCccEEEEecC--CCCC------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          132 WGNEDHIKAVAPPFDYIIGTDV--YAEH------LLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       132 w~~~~~~~~~~~~fD~V~~~d~--y~~~------~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +..      .....|+++.+-+  +...      .+...++.+...++++..+++-.+
T Consensus        70 ~~~------ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~ST  121 (185)
T PF03721_consen   70 IEE------AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIEST  121 (185)
T ss_dssp             HHH------HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSS
T ss_pred             hhh------hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccE
Confidence            111      1234676655443  4332      367778888888999777776443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.11  E-value=5.2  Score=31.58  Aligned_cols=75  Identities=24%  Similarity=0.285  Sum_probs=44.2

Q ss_pred             CCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++++||=.|++. .+|..++    +.|++|++++. ++.++.+...+..              ..++.+...|+.+....
T Consensus         4 ~~~~vlItGa~g-~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dl~~~~~~   68 (238)
T PRK05786          4 KGKKVAIIGVSE-GLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK--------------YGNIHYVVGDVSSTESA   68 (238)
T ss_pred             CCcEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCeEEEECCCCCHHHH
Confidence            578999999864 3444444    45889999987 4433333222221              12567778888765432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ..-+..|.++.+..
T Consensus        69 ~~~~~~~~~~~~~id~ii~~ag   90 (238)
T PRK05786         69 RNVIEKAAKVLNAIDGLVVTVG   90 (238)
T ss_pred             HHHHHHHHHHhCCCCEEEEcCC
Confidence            1       11235788877665

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=89.91  E-value=0.79  Score=39.66  Aligned_cols=42  Identities=31%  Similarity=0.374  Sum_probs=31.4

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHH
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR  103 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~  103 (220)
                      ...|.+||.+|||. |...+.+|+ .|. +|+++|. ++.++.+++
T Consensus       182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~  227 (386)
T cd08283         182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS  227 (386)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            34678999999987 888887776 476 4999987 556666654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=89.36  E-value=3.2  Score=35.07  Aligned_cols=89  Identities=16%  Similarity=0.025  Sum_probs=51.1

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ...|.+||=.|+|. |...+.+|+ .|++|++++. ++-++.+++    .+.            ..+  ...  .+.   
T Consensus       163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga------------~~v--i~~--~~~---  219 (329)
T TIGR02822       163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGA------------ASA--GGA--YDT---  219 (329)
T ss_pred             CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCC------------cee--ccc--ccc---
Confidence            34678999999865 666666664 4888999886 444444433    221            011  000  000   


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                        ..+.+|+++-.+..     ...+....++++++|++++..
T Consensus       220 --~~~~~d~~i~~~~~-----~~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       220 --PPEPLDAAILFAPA-----GGLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             --CcccceEEEECCCc-----HHHHHHHHHhhCCCcEEEEEe
Confidence              12357877654441     235566667889999887654

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=89.17  E-value=7.9  Score=29.54  Aligned_cols=64  Identities=14%  Similarity=0.068  Sum_probs=42.2

Q ss_pred             cCCCccEEEEecC-CC------C-------CChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEEe
Q 027659          141 VAPPFDYIIGTDV-YA------E-------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLV  204 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~------~-------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~v  204 (220)
                      ...+||.|+-+=| ..      .       ..+..+++....+|+++|.+.|+.....+-..-...+.. +.++.+...
T Consensus        72 ~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~  150 (166)
T PF10354_consen   72 KNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRK  150 (166)
T ss_pred             cCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEE
Confidence            3578999999888 43      1       235567778888899999999999877662111222333 346766443

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=89.01  E-value=0.68  Score=37.57  Aligned_cols=50  Identities=24%  Similarity=0.300  Sum_probs=32.6

Q ss_pred             HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHH
Q 027659           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPL  100 (220)
Q Consensus        44 ~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~  100 (220)
                      .|+.+|.+..      |.. ...+++|+-||+|.+++.+...+.+|+.-|+ +..+..
T Consensus         7 ~l~~~I~~~i------p~~-~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~   57 (260)
T PF02086_consen    7 KLAKWIIELI------PKN-KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINF   57 (260)
T ss_dssp             GGHHHHHHHS-------S--S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHH
T ss_pred             HHHHHHHHHc------CCC-CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHH
Confidence            3556666654      232 6779999999999999998888888999998 444333

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein

Probab=88.86  E-value=3.4  Score=33.98  Aligned_cols=108  Identities=22%  Similarity=0.283  Sum_probs=50.5

Q ss_pred             HHHHHHhhccccCCCCCCCCCCCcEEEeCCcc--cH-HHHHHH-Hh---CCeEEEecchhhHHHHHHHHHHhhhhhccCC
Q 027659           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC--GV-AGFGMA-LL---GCNVITTDQIEVLPLLKRNVEWNTSRISQMN  116 (220)
Q Consensus        44 ~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~--G~-~~l~la-~~---g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~  116 (220)
                      -|.+||....      -.-..+++||-||+|+  |. +|-+.. +.   ++-++=.|+.+.+.                 
T Consensus        47 QLCqYln~~t------laVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~vS-----------------  103 (299)
T PF06460_consen   47 QLCQYLNKTT------LAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDYVS-----------------  103 (299)
T ss_dssp             HHHHHHTTS-----------TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS--B------------------
T ss_pred             HHHHHhcccc------EeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhhcc-----------------
Confidence            5777885421      1233678999999997  44 344444 33   44444455544211                 


Q ss_pred             CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCC-------------CCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYA-------------EHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~-------------~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                           ..+.. ..   ++-... ..+.+||+|++ |+|.             +..+.-+...++.-|+-||.+.+-....
T Consensus       104 -----Da~~~-~~---~Dc~t~-~~~~k~DlIiS-DmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~  172 (299)
T PF06460_consen  104 -----DADQS-IV---GDCRTY-MPPDKFDLIIS-DMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEH  172 (299)
T ss_dssp             -----SSSEE-EE---S-GGGE-EESS-EEEEEE-----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SS
T ss_pred             -----ccCCc-ee---cccccc-CCCCcccEEEE-ecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecc
Confidence                 11122 22   221111 23678999985 5552             1235566777788899999988866655


Q ss_pred             Cc
Q 027659          184 ST  185 (220)
Q Consensus       184 ~~  185 (220)
                      +-
T Consensus       173 Sw  174 (299)
T PF06460_consen  173 SW  174 (299)
T ss_dssp             S-
T ss_pred             cc
Confidence            43

This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=88.76  E-value=0.91  Score=39.26  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=27.2

Q ss_pred             CcEEEeCCcccHHHHHHHH-hCCeEEEecchh
Q 027659           66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIE   96 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~-~g~~v~~~D~~~   96 (220)
                      ..++|+|+|.|.++-.++. .|-.|.++|.+.
T Consensus       155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq  186 (476)
T KOG2651|consen  155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQ  186 (476)
T ss_pred             CeeEEcCCCchHHHHHHhhccCceEEEeccch
Confidence            4799999999999999984 577899999865

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=88.60  E-value=2.4  Score=35.57  Aligned_cols=98  Identities=16%  Similarity=0.117  Sum_probs=57.6

Q ss_pred             CcEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++|+=+|||.  |+++..+++.|.+|++++. .+-++.++++   +++.+...      .....+. .....    +...
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~------g~~~~~~-~~~~~----~~~~   68 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA---GGLTLVEQ------GQASLYA-IPAET----ADAA   68 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc---CCeEEeeC------Ccceeec-cCCCC----cccc
Confidence            4789999997  6678888888989999987 4444444431   22211100      0111111 00011    1123


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      +.||+|+.+-= |.   ....++.+..++.+++.++...
T Consensus        69 ~~~D~viv~vK~~~---~~~al~~l~~~l~~~t~vv~lQ  104 (305)
T PRK05708         69 EPIHRLLLACKAYD---AEPAVASLAHRLAPGAELLLLQ  104 (305)
T ss_pred             cccCEEEEECCHHh---HHHHHHHHHhhCCCCCEEEEEe
Confidence            57999987633 54   5567778888888888766654

>TIGR00518 alaDH alanine dehydrogenase

Probab=88.52  E-value=1.4  Score=38.19  Aligned_cols=37  Identities=32%  Similarity=0.423  Sum_probs=26.1

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHH
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLP   99 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~   99 (220)
                      ..+.+|+=+|+|. |...+..++ +|++|+++|. ++.++
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~  204 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLR  204 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHH
Confidence            3567799999985 666665554 5889999997 44333

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=88.52  E-value=1  Score=38.62  Aligned_cols=97  Identities=24%  Similarity=0.225  Sum_probs=56.2

Q ss_pred             CCCcEEEeCCcc-cHHHHHHHHh-CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc-
Q 027659           64 KGKRVIELGAGC-GVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  138 (220)
Q Consensus        64 ~~~~vLELGcG~-G~~~l~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~-  138 (220)
                      .+.+|+=+|||+ |++++.+|+. |+ +|+++|. ++=++.+++-...                .+.+........... 
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----------------~~~~~~~~~~~~~~~~  231 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----------------DVVVNPSEDDAGAEIL  231 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----------------eEeecCccccHHHHHH
Confidence            444899999999 9999888864 65 5999998 5566666542110                000100000000000 


Q ss_pred             cc-cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          139 KA-VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       139 ~~-~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      .. ....+|+++=+--     ....+....++++++|.+.+..-
T Consensus       232 ~~t~g~g~D~vie~~G-----~~~~~~~ai~~~r~gG~v~~vGv  270 (350)
T COG1063         232 ELTGGRGADVVIEAVG-----SPPALDQALEALRPGGTVVVVGV  270 (350)
T ss_pred             HHhCCCCCCEEEECCC-----CHHHHHHHHHHhcCCCEEEEEec
Confidence            00 1236888874322     44566777778889888776543

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=88.25  E-value=3.4  Score=34.47  Aligned_cols=95  Identities=21%  Similarity=0.285  Sum_probs=52.4

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCce-EEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSI-QAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v-~~~~ldw~~~~~~  138 (220)
                      ..+.+||-.|+|. |...+.+|+ .|.+|++++. ++..+.++.    .+.            ..+ .....++...- .
T Consensus       164 ~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~------------~~~~~~~~~~~~~~~-~  226 (338)
T cd08254         164 KPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGA------------DEVLNSLDDSPKDKK-A  226 (338)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC------------CEEEcCCCcCHHHHH-H
Confidence            4567888888874 777777775 5888999886 444444432    221            000 00000000000 0


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ......+|+|+.+- .    ....+..+.+.|+++|.++..
T Consensus       227 ~~~~~~~D~vid~~-g----~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         227 AGLGGGFDVIFDFV-G----TQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             HhcCCCceEEEECC-C----CHHHHHHHHHHhhcCCEEEEE
Confidence            11245689887431 1    134566777889999988764

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=88.05  E-value=6.3  Score=33.24  Aligned_cols=99  Identities=27%  Similarity=0.341  Sum_probs=60.1

Q ss_pred             CcEEEeCCcc--cHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      ++|+=+|||.  |+++..|++.|..|+++-.++.++.++++    ++.+...      ..+.......    ........
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~----GL~i~~~------~~~~~~~~~~----~~~~~~~~   66 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKK----GLRIEDE------GGNFTTPVVA----ATDAEALG   66 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhC----CeEEecC------CCcccccccc----ccChhhcC
Confidence            3688899997  77888888889667777665545555443    4322110      0111111100    01111245


Q ss_pred             CccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          144 PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       144 ~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      .+|+|+..-= |.   .++.++.+..++++...+++...
T Consensus        67 ~~Dlviv~vKa~q---~~~al~~l~~~~~~~t~vl~lqN  102 (307)
T COG1893          67 PADLVIVTVKAYQ---LEEALPSLAPLLGPNTVVLFLQN  102 (307)
T ss_pred             CCCEEEEEecccc---HHHHHHHhhhcCCCCcEEEEEeC
Confidence            8999997754 55   67888889999999988777554

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=87.80  E-value=5.1  Score=32.95  Aligned_cols=107  Identities=21%  Similarity=0.284  Sum_probs=66.6

Q ss_pred             CcEEEeCCcccHHHHHHHHh-CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC---Ccc--
Q 027659           66 KRVIELGAGCGVAGFGMALL-GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HIK--  139 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~-g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~---~~~--  139 (220)
                      ..|+.||||.=.-+.-+... +..++=+|.|++++.=++-+..++..         ...+..++..|.. ..   .+.  
T Consensus        83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~---------~~~~~~~v~~Dl~-~~w~~~L~~~  152 (260)
T TIGR00027        83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAE---------PPAHRRAVPVDLR-QDWPAALAAA  152 (260)
T ss_pred             cEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCC---------CCCceEEeccCch-hhHHHHHHhC
Confidence            36999999965444444322 34577778898887766666654321         1345666666654 11   011  


Q ss_pred             -ccCCCccEEEEecC--CCC-CChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          140 -AVAPPFDYIIGTDV--YAE-HLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       140 -~~~~~fD~V~~~d~--y~~-~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       ......-++++-.+  |.. +....+++.+.....||+.+++-+..
T Consensus       153 gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       153 GFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence             11234457777777  543 45788999999888888888876543

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=87.77  E-value=3  Score=34.26  Aligned_cols=39  Identities=36%  Similarity=0.566  Sum_probs=27.5

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCCe-EEEecc-hhhHHHH
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL  101 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~~-v~~~D~-~~~l~~~  101 (220)
                      ..+.+||=.|+|. |++++.+|+ .|++ |+++|. ++-++.+
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a  161 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELA  161 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            3678899999876 777776765 4876 888886 4444444

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=87.62  E-value=1.4  Score=35.27  Aligned_cols=120  Identities=16%  Similarity=0.132  Sum_probs=62.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC----CeEEEecc-hhhHHHHHHHHHHhhh---hhc---------cC-CCC-------
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG----CNVITTDQ-IEVLPLLKRNVEWNTS---RIS---------QM-NPG-------  118 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g----~~v~~~D~-~~~l~~~~~n~~~n~~---~~~---------~~-~~~-------  118 (220)
                      ..-++.|=-||.|.+--.+..+.    ..|+++|+ +++++++++|+..-..   .-+         +. .|.       
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            34579999999998777666542    25999999 5699999999874211   100         00 000       


Q ss_pred             ----------CCCCCceEEEEeeeCCCCCc--cccCCCccEEEEecCCCCC-C---------hHHHHHHHHHhhCCCcEE
Q 027659          119 ----------SDLLGSIQAVELDWGNEDHI--KAVAPPFDYIIGTDVYAEH-L---------LEPLLQTIFALSGPKTTI  176 (220)
Q Consensus       119 ----------~~~~~~v~~~~ldw~~~~~~--~~~~~~fD~V~~~d~y~~~-~---------~~~l~~~l~~~l~~~g~~  176 (220)
                                ........+...|..+....  .......|+|+.--+|... .         ...++..+..+|-.++++
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV  210 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV  210 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence                      01122355555444432211  1123446887754436432 1         456888888889556666


Q ss_pred             EEEEEec
Q 027659          177 LLGYEIR  183 (220)
Q Consensus       177 ~i~~~~r  183 (220)
                      .++.+.|
T Consensus       211 ~v~~k~~  217 (246)
T PF11599_consen  211 AVSDKGR  217 (246)
T ss_dssp             EEEESSS
T ss_pred             EEecCCc
Confidence            6644443

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=87.60  E-value=0.95  Score=38.31  Aligned_cols=38  Identities=24%  Similarity=0.288  Sum_probs=32.2

Q ss_pred             EEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHH
Q 027659           68 VIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (220)
Q Consensus        68 vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~  105 (220)
                      |+||-||.|.+++.+.+.|.+ |.++|. +.+++..+.|.
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~   40 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANF   40 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhC
Confidence            689999999999999999998 557998 55888887775

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.59  E-value=6.7  Score=32.54  Aligned_cols=103  Identities=18%  Similarity=0.183  Sum_probs=52.8

Q ss_pred             cEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC------CCCceEEEEeeeCCCCC
Q 027659           67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD------LLGSIQAVELDWGNEDH  137 (220)
Q Consensus        67 ~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~------~~~~v~~~~ldw~~~~~  137 (220)
                      +|-=||+|+  +.++..++..|.+|++.|. ++.++.++.+++..............      ...++.+..    +   
T Consensus         5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----d---   77 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTT----D---   77 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeC----C---
Confidence            577789886  2344455566889999998 56777776665432110000000000      001232221    1   


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEE
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTI  176 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~  176 (220)
                      ....-...|+|+-+-+...+....+++.+...++++..+
T Consensus        78 ~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii  116 (287)
T PRK08293         78 LAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF  116 (287)
T ss_pred             HHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE
Confidence            111124568888764433334566667777666666544

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=87.39  E-value=3.2  Score=34.90  Aligned_cols=99  Identities=20%  Similarity=0.207  Sum_probs=55.8

Q ss_pred             CCcEEEeCCcc--cHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           65 GKRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        65 ~~~vLELGcG~--G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .++|+=+|+|.  |.++..+++.|.+|++..... .+.    +..++......      ..+..+.........   ...
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~----~~~~g~~~~~~------~~~~~~~~~~~~~~~---~~~   70 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEA----VRENGLQVDSV------HGDFHLPPVQAYRSA---EDM   70 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHH----HHhCCeEEEeC------CCCeeecCceEEcch---hhc
Confidence            35799999996  567777777888888887633 222    33343321100      011111111111111   123


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ..||+|+.+-- |.   ...+++.+..++++++.++...
T Consensus        71 ~~~D~vilavK~~~---~~~~~~~l~~~~~~~~~iv~lq  106 (313)
T PRK06249         71 PPCDWVLVGLKTTA---NALLAPLIPQVAAPDAKVLLLQ  106 (313)
T ss_pred             CCCCEEEEEecCCC---hHhHHHHHhhhcCCCCEEEEec
Confidence            57999988766 54   3567777788888888765543

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=86.79  E-value=14  Score=29.44  Aligned_cols=79  Identities=20%  Similarity=0.327  Sum_probs=49.0

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ..++++++|=.|++.|+ |..++    +.|++|++++. ++.++.+...++..+             .++.+...|..+.
T Consensus         7 ~~~~~k~ilItGas~~I-G~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dl~~~   72 (256)
T PRK06124          7 FSLAGQVALVTGSARGL-GFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG-------------GAAEALAFDIADE   72 (256)
T ss_pred             cCCCCCEEEEECCCchH-HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEccCCCH
Confidence            34578999999976544 44443    45889999987 445544444443322             3577788887765


Q ss_pred             CCcc-------ccCCCccEEEEecC
Q 027659          136 DHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d~  153 (220)
                      ....       ..-++.|.|+.+..
T Consensus        73 ~~~~~~~~~~~~~~~~id~vi~~ag   97 (256)
T PRK06124         73 EAVAAAFARIDAEHGRLDILVNNVG   97 (256)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCC
Confidence            4321       11246798887755

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=86.74  E-value=0.18  Score=35.67  Aligned_cols=38  Identities=21%  Similarity=0.458  Sum_probs=28.7

Q ss_pred             CccEEEEecC--C-----CCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          144 PFDYIIGTDV--Y-----AEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       144 ~fD~V~~~d~--y-----~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +||+|+|-.+  +     .++-+..+++.+..+|+|||.+++-.+
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ   45 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQ   45 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE--
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCC
Confidence            4899999887  2     244577899999999999999999754

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=86.62  E-value=3.1  Score=34.68  Aligned_cols=81  Identities=20%  Similarity=0.279  Sum_probs=42.0

Q ss_pred             CCCCCcEEEeCCcccHHH-HH--HHHhCCe-EEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAG-FG--MALLGCN-VITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~-l~--la~~g~~-v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..+++++|=+|+| |..- ++  ++..|++ |+.++... ..+.+++-++.-..          ....+.+...+|.+..
T Consensus       123 ~~~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~----------~~~~~~~~~~d~~~~~  191 (289)
T PRK12548        123 DVKGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQ----------EVPECIVNVYDLNDTE  191 (289)
T ss_pred             CcCCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhh----------cCCCceeEEechhhhh
Confidence            3567899999997 4422 22  3356876 99888631 12222222211110          0123445556665443


Q ss_pred             CccccCCCccEEEEecC
Q 027659          137 HIKAVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~  153 (220)
                      .....-..+|+|+.+-+
T Consensus       192 ~~~~~~~~~DilINaTp  208 (289)
T PRK12548        192 KLKAEIASSDILVNATL  208 (289)
T ss_pred             HHHhhhccCCEEEEeCC
Confidence            32222245799988776

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=86.47  E-value=3.7  Score=34.76  Aligned_cols=96  Identities=20%  Similarity=0.275  Sum_probs=60.5

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHH-HhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGC-GVAGFGMA-LLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la-~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ....+|.=||-|. |..+--.| -+|++|+..|.+ +-++.+..   ..             ..++....   .+...+.
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd---~f-------------~~rv~~~~---st~~~ie  226 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDD---LF-------------GGRVHTLY---STPSNIE  226 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhH---hh-------------CceeEEEE---cCHHHHH
Confidence            3445788898886 66555544 468999999984 33333322   11             13444443   3333333


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      ..-.+.|+||++=. -....+....+.+.+.++||++++
T Consensus       227 e~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         227 EAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             HHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence            34568999999877 666666666777778889988766

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=86.39  E-value=2.4  Score=36.21  Aligned_cols=39  Identities=28%  Similarity=0.363  Sum_probs=27.8

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCCe-EEEecc-hhhHHHH
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLL  101 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~~-v~~~D~-~~~l~~~  101 (220)
                      ..|.+||=.|||. |...+.+|+ .|++ |+++|. ++-++.+
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~  217 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA  217 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence            4678899999876 777777775 4875 999987 4444444

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=86.26  E-value=11  Score=32.32  Aligned_cols=111  Identities=18%  Similarity=0.018  Sum_probs=62.9

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      .+.+|.+.+.           .+.+++||=+|--...+...++....+|...++....... .+     .          
T Consensus         7 ~s~~~~r~~~-----------~~~~~~~l~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~-~~-----~----------   59 (342)
T PRK09489          7 ASEVLLRHSD-----------DFEQRRVLFAGDLQDDLPAQLDAASVRVHTQQFHHWQVLS-RQ-----M----------   59 (342)
T ss_pred             HHHHHHhhHH-----------HhCCCcEEEEcCcchhhHHhhhccceEEehhhhHHHHHHH-hh-----c----------
Confidence            4566666553           4578889988876655555554222234444554422111 11     0          


Q ss_pred             CCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                       ..++.+- .+...     .....||.|+.--+=.....+-++..+...|+|||.++++..++..
T Consensus        60 -~~~~~f~-~~~~~-----~~~~~~d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~g  117 (342)
T PRK09489         60 -GDNARFS-LVATA-----EDVADCDTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRSG  117 (342)
T ss_pred             -CCceEec-cccCC-----ccCCCCCEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEecccc
Confidence             1122222 11111     1235799998655522233666777788889999999999998875

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=86.25  E-value=2  Score=33.68  Aligned_cols=42  Identities=19%  Similarity=0.370  Sum_probs=26.7

Q ss_pred             hHHHHHHHHHhhCCCcEEEEEEEecCch--HHHHHHHHHhcCCeE
Q 027659          159 LEPLLQTIFALSGPKTTILLGYEIRSTS--VHEQMLQMWKSNFNV  201 (220)
Q Consensus       159 ~~~l~~~l~~~l~~~g~~~i~~~~r~~~--~~~~f~~~~~~~f~v  201 (220)
                      +..++..+.++|+|+|.+++....+...  ......+.+. +|.+
T Consensus        35 ~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~~~~~g-~~~~   78 (231)
T PF01555_consen   35 MEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELALEIFG-GFFL   78 (231)
T ss_dssp             HHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHHHHHHT-T-EE
T ss_pred             HHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHHHHHhh-hhhe
Confidence            3567778888999999999887766654  3333344444 4554

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=86.04  E-value=15  Score=30.28  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=56.4

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..+.|+.+|-=|...|+   .+..+++.|++|+.++. ++.++.........+.          ...++.....|..+.+
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~   73 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGY----------TGGKVLAIVCDVSKEV   73 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----------CCCeeEEEECcCCCHH
Confidence            46789999999997765   45677788999999997 5566665555444332          1346777777776543


Q ss_pred             Cc--------cccCCCccEEEEecC
Q 027659          137 HI--------KAVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~--------~~~~~~fD~V~~~d~  153 (220)
                      ..        ....++.|+++.+.-
T Consensus        74 ~~~~l~~~~~~~~~GkidiLvnnag   98 (270)
T KOG0725|consen   74 DVEKLVEFAVEKFFGKIDILVNNAG   98 (270)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEcCC
Confidence            21        112568999998765

>PRK06139 short chain dehydrogenase; Provisional

Probab=85.97  E-value=2.8  Score=35.58  Aligned_cols=78  Identities=19%  Similarity=0.252  Sum_probs=48.8

Q ss_pred             CCCCcEEEeCCcccHH---HHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~---~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..++++|=.|+..|+-   +..+++.|++|++++. ++.++.+...+...+             .++.+...|..+.+..
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~d~~~v   71 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG-------------AEVLVVPTDVTDADQV   71 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHH
Confidence            4678899889865442   2233456899999987 455555555554332             3567777888765432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ...+.+|+++.+--
T Consensus        72 ~~~~~~~~~~~g~iD~lVnnAG   93 (330)
T PRK06139         72 KALATQAASFGGRIDVWVNNVG   93 (330)
T ss_pred             HHHHHHHHHhcCCCCEEEECCC
Confidence            2       11257899988754

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=85.24  E-value=2.7  Score=33.39  Aligned_cols=77  Identities=23%  Similarity=0.218  Sum_probs=46.5

Q ss_pred             CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+++||=.|++ |.+|..++    +.|++|++++. ++.+..+...+...             ..++.+...|+.+.+.
T Consensus         4 ~~~~~ilItGas-g~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~~~   69 (251)
T PRK12826          4 LEGRVALVTGAA-RGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA-------------GGKARARQVDVRDRAA   69 (251)
T ss_pred             CCCCEEEEcCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHHH
Confidence            467889988864 55555544    45889999986 34333333333322             2357788888877543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       ..+.+|+|+.+..
T Consensus        70 ~~~~~~~~~~~~~~~d~vi~~ag   92 (251)
T PRK12826         70 LKAAVAAGVEDFGRLDILVANAG   92 (251)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCC
Confidence            211       1236899988865

>PRK07063 short chain dehydrogenase; Provisional

Probab=84.92  E-value=3.3  Score=33.37  Aligned_cols=79  Identities=20%  Similarity=0.265  Sum_probs=47.8

Q ss_pred             CCCCcEEEeCCcccHHHHH----HHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+++++|=.|++.|+ |..    +++.|++|+++|. ++.++.+...+.....           ..++.+...|..+...
T Consensus         5 l~~k~vlVtGas~gI-G~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~   72 (260)
T PRK07063          5 LAGKVALVTGAAQGI-GAAIARAFAREGAAVALADLDAALAERAAAAIARDVA-----------GARVLAVPADVTDAAS   72 (260)
T ss_pred             cCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC-----------CceEEEEEccCCCHHH
Confidence            467899999986544 333    3455899999987 4444444444332111           2457777878776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ...+..|+++.+.-
T Consensus        73 ~~~~~~~~~~~~g~id~li~~ag   95 (260)
T PRK07063         73 VAAAVAAAEEAFGPLDVLVNNAG   95 (260)
T ss_pred             HHHHHHHHHHHhCCCcEEEECCC
Confidence            21       11247898887654

>PRK07326 short chain dehydrogenase; Provisional

Probab=84.84  E-value=9.6  Score=29.99  Aligned_cols=75  Identities=23%  Similarity=0.289  Sum_probs=43.6

Q ss_pred             CCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .++++|=.|+ +|.+|..++    ..|++|++++. ++..+.+...+...              ..+.+...|..+....
T Consensus         5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--------------~~~~~~~~D~~~~~~~   69 (237)
T PRK07326          5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--------------GNVLGLAADVRDEADV   69 (237)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--------------CcEEEEEccCCCHHHH
Confidence            4678999996 555555554    34889999986 44333333322211              2467777776654432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       .....+|+|+.+.-
T Consensus        70 ~~~~~~~~~~~~~~d~vi~~ag   91 (237)
T PRK07326         70 QRAVDAIVAAFGGLDVLIANAG   91 (237)
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            1       01236899887654

>PRK05867 short chain dehydrogenase; Provisional

Probab=84.62  E-value=2.8  Score=33.63  Aligned_cols=78  Identities=21%  Similarity=0.296  Sum_probs=46.7

Q ss_pred             CCCCcEEEeCCcccHH---HHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~---~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++++++|=.|++.|+-   +..+++.|++|++++. .+.++.+...+...             ..++.+...|..+.+..
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~~   73 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS-------------GGKVVPVCCDVSQHQQV   73 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEEccCCCHHHH
Confidence            4688999999866542   2233455899999987 44444444333322             13566777777665432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ..-++.|+++.+.-
T Consensus        74 ~~~~~~~~~~~g~id~lv~~ag   95 (253)
T PRK05867         74 TSMLDQVTAELGGIDIAVCNAG   95 (253)
T ss_pred             HHHHHHHHHHhCCCCEEEECCC
Confidence            1       11247899987754

>PRK05854 short chain dehydrogenase; Provisional

Probab=84.61  E-value=5.7  Score=33.28  Aligned_cols=80  Identities=23%  Similarity=0.289  Sum_probs=47.9

Q ss_pred             CCCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..+++++|=.|++.|+ |..+    ++.|++|++++. .+-.+.+...+.....           ..++.+..+|..+..
T Consensus        11 ~l~gk~~lITGas~GI-G~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~-----------~~~v~~~~~Dl~d~~   78 (313)
T PRK05854         11 DLSGKRAVVTGASDGL-GLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVP-----------DAKLSLRALDLSSLA   78 (313)
T ss_pred             ccCCCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-----------CCceEEEEecCCCHH
Confidence            3578899999987654 3333    355899998876 3333333333322111           236788888887754


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ...++.|+++.+.-
T Consensus        79 sv~~~~~~~~~~~~~iD~li~nAG  102 (313)
T PRK05854         79 SVAALGEQLRAEGRPIHLLINNAG  102 (313)
T ss_pred             HHHHHHHHHHHhCCCccEEEECCc
Confidence            321       12356899887754

>PRK06701 short chain dehydrogenase; Provisional

Probab=84.58  E-value=11  Score=31.13  Aligned_cols=78  Identities=22%  Similarity=0.190  Sum_probs=44.8

Q ss_pred             CCCCCcEEEeCCcccHHHHHH----HHhCCeEEEecch-h-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQI-E-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~~-~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ..+++++|=.|++.|+ |..+    ++.|++|++++.. + .++.....++..             ..++.+...|..+.
T Consensus        43 ~~~~k~iLItGasggI-G~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~  108 (290)
T PRK06701         43 KLKGKVALITGGDSGI-GRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE-------------GVKCLLIPGDVSDE  108 (290)
T ss_pred             CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc-------------CCeEEEEEccCCCH
Confidence            4567899999976654 3333    3458899888763 2 233332222221             23567777777665


Q ss_pred             CCccc-------cCCCccEEEEecC
Q 027659          136 DHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~~-------~~~~fD~V~~~d~  153 (220)
                      .....       ....+|+|+.+..
T Consensus       109 ~~~~~~~~~i~~~~~~iD~lI~~Ag  133 (290)
T PRK06701        109 AFCKDAVEETVRELGRLDILVNNAA  133 (290)
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCc
Confidence            43211       1246898886644

>PRK08862 short chain dehydrogenase; Provisional

Probab=84.46  E-value=4.2  Score=32.37  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=47.2

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++++|=.|++.|+   ++..+++.|++|++++. ++.++.+.+.+...+             .++....+|-.+.+..
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~-------------~~~~~~~~D~~~~~~~   69 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT-------------DNVYSFQLKDFSQESI   69 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEEccCCCHHHH
Confidence            467899999999876   34445567999999986 445554444443322             2445555665554432


Q ss_pred             c-------ccCC-CccEEEEec
Q 027659          139 K-------AVAP-PFDYIIGTD  152 (220)
Q Consensus       139 ~-------~~~~-~fD~V~~~d  152 (220)
                      .       ..-+ ..|+++.+.
T Consensus        70 ~~~~~~~~~~~g~~iD~li~na   91 (227)
T PRK08862         70 RHLFDAIEQQFNRAPDVLVNNW   91 (227)
T ss_pred             HHHHHHHHHHhCCCCCEEEECC
Confidence            1       1113 789998875

>PRK08339 short chain dehydrogenase; Provisional

Probab=84.32  E-value=4.3  Score=32.98  Aligned_cols=79  Identities=15%  Similarity=0.147  Sum_probs=47.6

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+....            ..++.+...|..+....
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~~~i   73 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES------------NVDVSYIVADLTKREDL   73 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHHH
Confidence            578889999987654   22334456999999987 444444444433211            23577778787765432


Q ss_pred             cc------cCCCccEEEEecC
Q 027659          139 KA------VAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~~------~~~~fD~V~~~d~  153 (220)
                      ..      ..+..|+++.+.-
T Consensus        74 ~~~~~~~~~~g~iD~lv~nag   94 (263)
T PRK08339         74 ERTVKELKNIGEPDIFFFSTG   94 (263)
T ss_pred             HHHHHHHHhhCCCcEEEECCC
Confidence            11      1246898887653

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=84.18  E-value=3.5  Score=33.22  Aligned_cols=79  Identities=19%  Similarity=0.200  Sum_probs=46.0

Q ss_pred             CCCCCcEEEeCCcccHHHHH---HHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGCGVAGFG---MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~---la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ...++++|=.|++.|+-.-.   +++.|++|++++..+..+.+.+.+...             ..++.+...|..+.+..
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~i   78 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKE-------------GRKVTFVQVDLTKPESA   78 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhc-------------CCceEEEEcCCCCHHHH
Confidence            35788999999977543322   345689988887643233333222221             23567777777765432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ...+..|+++.+.-
T Consensus        79 ~~~~~~~~~~~g~id~li~~ag  100 (258)
T PRK06935         79 EKVVKEALEEFGKIDILVNNAG  100 (258)
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            1       11246898887654

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=84.15  E-value=15  Score=34.29  Aligned_cols=70  Identities=14%  Similarity=0.212  Sum_probs=42.2

Q ss_pred             eeeCCCCC-ccccCCCccEEEEecC---CCCCCh-HHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEE
Q 027659          130 LDWGNEDH-IKAVAPPFDYIIGTDV---YAEHLL-EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKL  203 (220)
Q Consensus       130 ldw~~~~~-~~~~~~~fD~V~~~d~---y~~~~~-~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~  203 (220)
                      +-|++... ++.....||+++.-.-   -+++.+ +.+++.+.++++|+|++. ++..     -....+.+ ..+|+++.
T Consensus       151 l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~-t~t~-----a~~vr~~l~~~GF~v~~  224 (662)
T PRK01747        151 LWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLA-TFTS-----AGFVRRGLQEAGFTVRK  224 (662)
T ss_pred             EEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEE-Eeeh-----HHHHHHHHHHcCCeeee
Confidence            44455432 2223356999987643   444444 689999999999998865 3321     12223334 45898877


Q ss_pred             ee
Q 027659          204 VP  205 (220)
Q Consensus       204 v~  205 (220)
                      .+
T Consensus       225 ~~  226 (662)
T PRK01747        225 VK  226 (662)
T ss_pred             cC
Confidence            64

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=83.98  E-value=2.7  Score=34.62  Aligned_cols=31  Identities=23%  Similarity=0.228  Sum_probs=25.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC-------CeEEEecc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ   94 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g-------~~v~~~D~   94 (220)
                      ++..++|+|||.|.+|-.+++.-       ..++++|.
T Consensus        18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR   55 (259)
T PF05206_consen   18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR   55 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence            55689999999999999998642       36899996

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=83.63  E-value=5.9  Score=31.85  Aligned_cols=78  Identities=19%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHH----hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMAL----LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~----~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..+++++|=.|+ +|.+|..+++    .|++|++++. .+-++.+...+...             ..++.+...|..+.+
T Consensus         9 ~~~~k~ilItGa-~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------------~~~~~~~~~Dl~d~~   74 (259)
T PRK08213          9 DLSGKTALVTGG-SRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL-------------GIDALWIAADVADEA   74 (259)
T ss_pred             CcCCCEEEEECC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEccCCCHH
Confidence            347889999995 4556666553    4889999986 34444443333322             235677788877654


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ......|.|+.+..
T Consensus        75 ~i~~~~~~~~~~~~~id~vi~~ag   98 (259)
T PRK08213         75 DIERLAEETLERFGHVDILVNNAG   98 (259)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCC
Confidence            331       11246899988754

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=83.58  E-value=6.5  Score=31.32  Aligned_cols=94  Identities=28%  Similarity=0.261  Sum_probs=52.9

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc-
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  138 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~-  138 (220)
                      .++.+||-.|+|. |...+.+++ .|.+|++++. ++..+.++..    +.            ..    .++....... 
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~------------~~----~~~~~~~~~~~  192 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GA------------DH----VIDYKEEDLEE  192 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CC------------ce----eccCCcCCHHH
Confidence            4678999999986 555555554 4788999987 4444444321    11            00    0111111100 


Q ss_pred             ---cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          139 ---KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       139 ---~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                         ......+|+|+.+-..     ...+..+.+.++++|.++....
T Consensus       193 ~~~~~~~~~~d~vi~~~~~-----~~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         193 ELRLTGGGGADVVIDAVGG-----PETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             HHHHhcCCCCCEEEECCCC-----HHHHHHHHHhcccCCEEEEEcc
Confidence               0124579999864321     1445666677889998876543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06949 short chain dehydrogenase; Provisional

Probab=83.55  E-value=4.5  Score=32.38  Aligned_cols=78  Identities=27%  Similarity=0.359  Sum_probs=46.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+++||=.|++ |.+|..++    +.|++|++++. ++.++.+...+...             ..++.+...|..+.+
T Consensus         6 ~~~~k~ilItGas-g~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~   71 (258)
T PRK06949          6 NLEGKVALVTGAS-SGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE-------------GGAAHVVSLDVTDYQ   71 (258)
T ss_pred             CCCCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHH
Confidence            3578899999954 44455444    44889999986 44444443333221             235677777776654


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ...+..|+|+.+.-
T Consensus        72 ~~~~~~~~~~~~~~~~d~li~~ag   95 (258)
T PRK06949         72 SIKAAVAHAETEAGTIDILVNNSG   95 (258)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCC
Confidence            321       11246898888665

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=83.55  E-value=9.9  Score=26.54  Aligned_cols=61  Identities=16%  Similarity=0.190  Sum_probs=35.7

Q ss_pred             CccEEEEecCCCCC---------------ChHHHHHHHHHhhCCCcEEEEEEEecC---chHHHHHHHHHhcCCeEEEee
Q 027659          144 PFDYIIGTDVYAEH---------------LLEPLLQTIFALSGPKTTILLGYEIRS---TSVHEQMLQMWKSNFNVKLVP  205 (220)
Q Consensus       144 ~fD~V~~~d~y~~~---------------~~~~l~~~l~~~l~~~g~~~i~~~~r~---~~~~~~f~~~~~~~f~v~~v~  205 (220)
                      +||+|++||||...               .+..++....+++  +|.+.+..+.+-   ......+.+.+-....+..+-
T Consensus         2 kFD~VIGNPPY~~~~~~~~~~~~~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~~~~i~~i~   79 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIKSLSKKKKKKKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLNNTNIKKII   79 (106)
T ss_pred             CcCEEEECCCChhhccccchhhcccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhcCCCeeEEE
Confidence            69999999995321               1233566556667  777755555322   223456666665555565554


Q ss_pred             C
Q 027659          206 K  206 (220)
Q Consensus       206 ~  206 (220)
                      .
T Consensus        80 ~   80 (106)
T PF07669_consen   80 D   80 (106)
T ss_pred             E
Confidence            3

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=83.21  E-value=6.4  Score=31.53  Aligned_cols=78  Identities=22%  Similarity=0.331  Sum_probs=47.1

Q ss_pred             CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .++++++|=.|+ +|.+|..++    ..|++|++++. ++.++.+...+...             ..++.+...|..+.+
T Consensus         7 ~~~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~-------------~~~~~~~~~D~~~~~   72 (255)
T PRK07523          7 DLTGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ-------------GLSAHALAFDVTDHD   72 (255)
T ss_pred             CCCCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------------CceEEEEEccCCCHH
Confidence            357889999996 445555555    35889999987 34444443333322             124667777776654


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ......|+|+.+.-
T Consensus        73 ~~~~~~~~~~~~~~~~d~li~~ag   96 (255)
T PRK07523         73 AVRAAIDAFEAEIGPIDILVNNAG   96 (255)
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCC
Confidence            321       11246898888765

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=83.13  E-value=9.4  Score=31.34  Aligned_cols=111  Identities=14%  Similarity=0.138  Sum_probs=66.7

Q ss_pred             CCCcEEEeCCcccHHHHHHH----HhCC--eEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMA----LLGC--NVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la----~~g~--~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .+...+|||+|+..=+-.+.    ..|.  +.+.+|++. .++...+.+...-.           .-.+...+.|....-
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~-----------~l~v~~l~~~~~~~L  146 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYP-----------GLEVNALCGDYELAL  146 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCC-----------CCeEeehhhhHHHHH
Confidence            46789999999866554443    3343  688999955 55544444433221           123333443332221


Q ss_pred             -CccccCCCccEEEEecC--CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          137 -HIKAVAPPFDYIIGTDV--YAEHLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       137 -~~~~~~~~fD~V~~~d~--y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                       .++....+.=+-++|..  +.+.....++..+...++||-.+++....+.+
T Consensus       147 a~~~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k~  198 (321)
T COG4301         147 AELPRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRKP  198 (321)
T ss_pred             hcccCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccCH
Confidence             12211222223344555  77777889999999999999999998776665

>PRK05876 short chain dehydrogenase; Provisional

Probab=83.07  E-value=5.5  Score=32.66  Aligned_cols=77  Identities=16%  Similarity=0.211  Sum_probs=46.0

Q ss_pred             CCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ++++++|=.|++.|+ |..+    ++.|++|+++|. .+.++.+...+...             ..++.+...|..+...
T Consensus         4 ~~~k~vlVTGas~gI-G~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~-------------~~~~~~~~~Dv~d~~~   69 (275)
T PRK05876          4 FPGRGAVITGGASGI-GLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE-------------GFDVHGVMCDVRHREE   69 (275)
T ss_pred             cCCCEEEEeCCCchH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEeCCCCCHHH
Confidence            567889988887654 4433    345889999987 33444333333221             2356777777776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ...++.|+++.+.-
T Consensus        70 v~~~~~~~~~~~g~id~li~nAg   92 (275)
T PRK05876         70 VTHLADEAFRLLGHVDVVFSNAG   92 (275)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11246798887654

>PRK07062 short chain dehydrogenase; Provisional

Probab=82.95  E-value=7.3  Score=31.41  Aligned_cols=81  Identities=16%  Similarity=0.138  Sum_probs=47.9

Q ss_pred             CCCCCcEEEeCCcccHHH---HHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~---l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+++.+|=.|++.|+-.   ..++..|++|++++. ++.++.+...+.....           ..++.+...|..+.+.
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~   73 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFP-----------GARLLAARCDVLDEAD   73 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEEecCCCHHH
Confidence            357889999998765422   233355889999987 4444444333322110           2356777778777543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-+..|+++.+--
T Consensus        74 v~~~~~~~~~~~g~id~li~~Ag   96 (265)
T PRK07062         74 VAAFAAAVEARFGGVDMLVNNAG   96 (265)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCC
Confidence            21       11256899887754

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=82.94  E-value=3.5  Score=35.13  Aligned_cols=40  Identities=30%  Similarity=0.356  Sum_probs=28.3

Q ss_pred             CCCCCcEEEeCC-c-ccHHHHHHHH-hCCeEEEecc-hhhHHHH
Q 027659           62 KLKGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLL  101 (220)
Q Consensus        62 ~~~~~~vLELGc-G-~G~~~l~la~-~g~~v~~~D~-~~~l~~~  101 (220)
                      ...|.+||=.|+ | .|...+.+|+ .|++|++++. ++-.+.+
T Consensus       156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~  199 (348)
T PLN03154        156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLL  199 (348)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence            346789999998 4 4777777775 5889998886 4444444

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=82.89  E-value=4  Score=33.32  Aligned_cols=112  Identities=12%  Similarity=0.098  Sum_probs=62.4

Q ss_pred             eCCcccHHHHHHHH--hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC--CccccCCCc
Q 027659           71 LGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--HIKAVAPPF  145 (220)
Q Consensus        71 LGcG~G~~~l~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~--~~~~~~~~f  145 (220)
                      +..=.|.+.++...  ..-+.++.|+ ++-.+.++.|+...              .++++...|=-..-  .++ +..+=
T Consensus        62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~--------------~~v~v~~~DG~~~l~allP-P~~rR  126 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD--------------RRVRVHHRDGYEGLKALLP-PPERR  126 (245)
T ss_dssp             --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT--------------S-EEEE-S-HHHHHHHH-S--TTS-
T ss_pred             cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC--------------CccEEEeCchhhhhhhhCC-CCCCC
Confidence            34445666665554  4557999998 77778887776532              36677663211100  011 12233


Q ss_pred             cEEEEecCCC-CCChHHHHHHHHHhhC--CCcEEEEEEEecCchHHHHHHHHHhc
Q 027659          146 DYIIGTDVYA-EHLLEPLLQTIFALSG--PKTTILLGYEIRSTSVHEQMLQMWKS  197 (220)
Q Consensus       146 D~V~~~d~y~-~~~~~~l~~~l~~~l~--~~g~~~i~~~~r~~~~~~~f~~~~~~  197 (220)
                      -+|+.-++|. .++++.+++++.+.++  +.|++.|=++.......+.|.+.+++
T Consensus       127 glVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi~~~~~~~~~~~~l~~  181 (245)
T PF04378_consen  127 GLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPIKDRERVDRFLRALKA  181 (245)
T ss_dssp             EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeecccHHHHHHHHHHHHh
Confidence            3555444464 5678999999998886  78998888998777777888877753

; PDB: 2OO3_A.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.85  E-value=5.1  Score=33.27  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=53.5

Q ss_pred             CcEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC-----CCCceEEEEeeeCCCCC
Q 027659           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDH  137 (220)
Q Consensus        66 ~~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~ldw~~~~~  137 (220)
                      ++|.=||+|. | .++..++..|.+|++.|. ++.++.+...+..+..........+.     ...++.+..    +.  
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~----~~--   78 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT----DL--   78 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC----CH--
Confidence            4677789986 3 345555667889999997 56666655544433210000000000     001222221    11  


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEE
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                       .. -...|+|+-+-+-.......+++.+...++++..++
T Consensus        79 -~~-~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~  116 (292)
T PRK07530         79 -ED-LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA  116 (292)
T ss_pred             -HH-hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence             11 235788887643222334566777777777776544

>PRK07109 short chain dehydrogenase; Provisional

Probab=82.77  E-value=18  Score=30.60  Aligned_cols=79  Identities=23%  Similarity=0.261  Sum_probs=48.4

Q ss_pred             CCCCCcEEEeCCcccHHH---HHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAG---FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~---l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++++||=.|+..|+-.   ..+++.|++|++++. ++.++.+...+...             ..++.+...|..+.+.
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~-------------g~~~~~v~~Dv~d~~~   71 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA-------------GGEALAVVADVADAEA   71 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc-------------CCcEEEEEecCCCHHH
Confidence            346778999997654422   223456899999987 44555554444432             2357777878777553


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-++.|+++.+.-
T Consensus        72 v~~~~~~~~~~~g~iD~lInnAg   94 (334)
T PRK07109         72 VQAAADRAEEELGPIDTWVNNAM   94 (334)
T ss_pred             HHHHHHHHHHHCCCCCEEEECCC
Confidence            221       1247899887654

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.63  E-value=14  Score=29.06  Aligned_cols=77  Identities=26%  Similarity=0.291  Sum_probs=45.8

Q ss_pred             CCCCcEEEeCCcccHHHHHHH----HhCCeEEEe-cc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      +.++++|=.|+ +|.+|..++    +.|++|+.+ +. ++.++.+...+...             ..++.+...|..+..
T Consensus         3 ~~~~~ilI~Ga-sg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~   68 (247)
T PRK05565          3 LMGKVAIVTGA-SGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE-------------GGDAIAVKADVSSEE   68 (247)
T ss_pred             CCCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCeEEEEECCCCCHH
Confidence            45678888886 455555554    458888887 76 44444333333321             235778888877665


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       ....+|+|+.+.-
T Consensus        69 ~~~~~~~~~~~~~~~id~vi~~ag   92 (247)
T PRK05565         69 DVENLVEQIVEKFGKIDILVNNAG   92 (247)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCC
Confidence            3211       1136899988765

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=82.44  E-value=6  Score=32.92  Aligned_cols=102  Identities=16%  Similarity=0.122  Sum_probs=54.1

Q ss_pred             cEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC-----CCCCceEEEEeeeCCCCCc
Q 027659           67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS-----DLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        67 ~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~-----~~~~~v~~~~ldw~~~~~~  138 (220)
                      +|-=||+|+  +-.+..++..|.+|++.|. ++.++.++..+..+-....+....+     ....++++..    +.   
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~----~~---   79 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT----DL---   79 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC----CH---
Confidence            677889986  3345556677999999998 6677777666654422111100000     0011222221    11   


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhh-CCCcEE
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALS-GPKTTI  176 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l-~~~g~~  176 (220)
                      . .-...|+|+-+-+-..+.-..++..+.+++ +|+..+
T Consensus        80 ~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il  117 (286)
T PRK07819         80 G-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVL  117 (286)
T ss_pred             H-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEE
Confidence            1 124568887664333333456667777776 455443

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=82.17  E-value=2.5  Score=36.30  Aligned_cols=40  Identities=28%  Similarity=0.424  Sum_probs=27.6

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHH
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK  102 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~  102 (220)
                      ..|.+||=+|+|. |...+.+|+ .|+ +|+++|. ++-++.++
T Consensus       190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~  233 (371)
T cd08281         190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR  233 (371)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence            4577888899876 766666665 488 5999997 44444443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=81.96  E-value=4.7  Score=32.77  Aligned_cols=39  Identities=18%  Similarity=0.194  Sum_probs=25.7

Q ss_pred             CCcEEEeCCcccHHHHHHHHh----------CCeEEEecchhhHHHHHH
Q 027659           65 GKRVIELGAGCGVAGFGMALL----------GCNVITTDQIEVLPLLKR  103 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~----------g~~v~~~D~~~~l~~~~~  103 (220)
                      ..+|+|+|+|+|.++.-+...          ..+++.++.+..+...++
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~   67 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQK   67 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHH
Confidence            368999999999998877643          136999998653343333

; PDB: 4F3N_A 1ZKD_B.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=81.92  E-value=19  Score=29.76  Aligned_cols=96  Identities=28%  Similarity=0.351  Sum_probs=53.4

Q ss_pred             cEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        67 ~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      +|+=+|+|.  +.++..+++.|.+|+++|. ++.++.+++    ++....        ........   ........ ..
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~----~g~~~~--------~~~~~~~~---~~~~~~~~-~~   65 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNE----NGLRLE--------DGEITVPV---LAADDPAE-LG   65 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHH----cCCccc--------CCceeecc---cCCCChhH-cC
Confidence            577789886  3455556667888999997 554444332    222100        01111000   00011111 26


Q ss_pred             CccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          144 PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       144 ~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      .+|+|+.+-. +.   ...+++.+...+.++..++....
T Consensus        66 ~~d~vila~k~~~---~~~~~~~l~~~l~~~~~iv~~~n  101 (304)
T PRK06522         66 PQDLVILAVKAYQ---LPAALPSLAPLLGPDTPVLFLQN  101 (304)
T ss_pred             CCCEEEEeccccc---HHHHHHHHhhhcCCCCEEEEecC
Confidence            7999998766 53   67788888888877766655443

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=81.89  E-value=7.6  Score=35.75  Aligned_cols=87  Identities=17%  Similarity=0.108  Sum_probs=48.0

Q ss_pred             CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...|++||=.|+. |.+|..++    +.|++|++++. .+-+..+..++....+.....    ....++.++..|..+.+
T Consensus        77 ~~~gKvVLVTGAT-GgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga----~~~~~v~iV~gDLtD~e  151 (576)
T PLN03209         77 TKDEDLAFVAGAT-GKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGT----QPVEKLEIVECDLEKPD  151 (576)
T ss_pred             cCCCCEEEEECCC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccc----cccCceEEEEecCCCHH
Confidence            4467788888874 45555544    44889998886 443433333333221100000    00135788888887654


Q ss_pred             CccccCCCccEEEEecC
Q 027659          137 HIKAVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~  153 (220)
                      .+...-+..|+||.+--
T Consensus       152 sI~~aLggiDiVVn~AG  168 (576)
T PLN03209        152 QIGPALGNASVVICCIG  168 (576)
T ss_pred             HHHHHhcCCCEEEEccc
Confidence            43333356899887643

>PRK08703 short chain dehydrogenase; Provisional

Probab=81.83  E-value=9.9  Score=30.07  Aligned_cols=41  Identities=24%  Similarity=0.246  Sum_probs=26.4

Q ss_pred             CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHH
Q 027659           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRN  104 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n  104 (220)
                      .+++++|=.||+ |.+|..++    +.|++|++++. ++.++.+...
T Consensus         4 l~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~   49 (239)
T PRK08703          4 LSDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDA   49 (239)
T ss_pred             CCCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHH
Confidence            467899999964 44555544    45889999987 4444433333

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=81.56  E-value=6.1  Score=31.45  Aligned_cols=74  Identities=23%  Similarity=0.209  Sum_probs=43.1

Q ss_pred             CcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc--
Q 027659           66 KRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI--  138 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~--  138 (220)
                      +++|=.|+. |.+|..++    +.|++|++++. ++-.+.+...+...             ..++.+...|+.+.+..  
T Consensus         2 ~~vlItGa~-g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~~~   67 (255)
T TIGR01963         2 KTALVTGAA-SGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA-------------GGSVIYLVADVTKEDEIAD   67 (255)
T ss_pred             CEEEEcCCc-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEECCCCCHHHHHH
Confidence            467777754 55555555    34889999987 43333333322221             23677888888776522  


Q ss_pred             -----cccCCCccEEEEecC
Q 027659          139 -----KAVAPPFDYIIGTDV  153 (220)
Q Consensus       139 -----~~~~~~fD~V~~~d~  153 (220)
                           .......|+|+.+..
T Consensus        68 ~~~~~~~~~~~~d~vi~~a~   87 (255)
T TIGR01963        68 MIAAAAAEFGGLDILVNNAG   87 (255)
T ss_pred             HHHHHHHhcCCCCEEEECCC
Confidence                 112345898887664

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=81.53  E-value=4.4  Score=33.45  Aligned_cols=102  Identities=15%  Similarity=0.175  Sum_probs=51.6

Q ss_pred             cEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC-----CCCceEEEEeeeCCCCCc
Q 027659           67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-----LLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        67 ~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-----~~~~v~~~~ldw~~~~~~  138 (220)
                      +|-=+|+|.  +.++..++..|.+|++.|. ++.++.++..+..+.....+......     ...++.+..    +..  
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~----~~~--   78 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT----DLD--   78 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC----CHH--
Confidence            466688886  4455556667889999997 55665555444332111100000000     001222211    111  


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEE
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTI  176 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~  176 (220)
                        .-...|+|+-+-+-....-..+++.+.+.++++..+
T Consensus        79 --~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il  114 (282)
T PRK05808         79 --DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAIL  114 (282)
T ss_pred             --HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEE
Confidence              124578887664322222357777777777777655

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=81.43  E-value=6.5  Score=28.88  Aligned_cols=98  Identities=23%  Similarity=0.248  Sum_probs=50.7

Q ss_pred             EEEeCCcc--cHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCc
Q 027659           68 VIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPF  145 (220)
Q Consensus        68 vLELGcG~--G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~f  145 (220)
                      |+=+|+|.  .+++-.|++.|.+|++++-+.-++.    +..++..+.....    ...+.... .+...   ......+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~----~~~~g~~~~~~~~----~~~~~~~~-~~~~~---~~~~~~~   68 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEA----IKEQGLTITGPDG----DETVQPPI-VISAP---SADAGPY   68 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHH----HHHHCEEEEETTE----EEEEEEEE-EESSH---GHHHSTE
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHh----hhheeEEEEeccc----ceeccccc-ccCcc---hhccCCC
Confidence            34467765  2233344455888999987442222    3334432211000    01111111 11111   1235689


Q ss_pred             cEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          146 DYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       146 D~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      |+|+.+-= |.   .+..++.++..+.+++.+++..
T Consensus        69 D~viv~vKa~~---~~~~l~~l~~~~~~~t~iv~~q  101 (151)
T PF02558_consen   69 DLVIVAVKAYQ---LEQALQSLKPYLDPNTTIVSLQ  101 (151)
T ss_dssp             SEEEE-SSGGG---HHHHHHHHCTGEETTEEEEEES
T ss_pred             cEEEEEecccc---hHHHHHHHhhccCCCcEEEEEe
Confidence            99997744 44   5678888888899987666544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=81.05  E-value=9.2  Score=30.67  Aligned_cols=78  Identities=21%  Similarity=0.256  Sum_probs=45.1

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..+++++|=.|++.|+   ++..+++.|++|+++|..+....+...+...             ..++.+...|..+.+..
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~   71 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAA-------------GGEALALTADLETYAGA   71 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhc-------------CCeEEEEEEeCCCHHHH
Confidence            4578889999976544   2223345688999998744333232222221             23566777787765422


Q ss_pred             c-------ccCCCccEEEEec
Q 027659          139 K-------AVAPPFDYIIGTD  152 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d  152 (220)
                      .       ...+.+|+++.+-
T Consensus        72 ~~~~~~~~~~~~~id~lv~nA   92 (260)
T PRK12823         72 QAAMAAAVEAFGRIDVLINNV   92 (260)
T ss_pred             HHHHHHHHHHcCCCeEEEECC
Confidence            1       1124689888765

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=81.04  E-value=12  Score=32.02  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=24.1

Q ss_pred             CCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc
Q 027659           64 KGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ   94 (220)
Q Consensus        64 ~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~   94 (220)
                      .|.+||=.|+|. |+..+.+|+ .|++|++++.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~  215 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISS  215 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            577888899986 777777775 5888888875

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.81  E-value=6.9  Score=32.44  Aligned_cols=40  Identities=23%  Similarity=0.388  Sum_probs=27.3

Q ss_pred             cEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHH
Q 027659           67 RVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVE  106 (220)
Q Consensus        67 ~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~  106 (220)
                      +|.=+|+|. | .++..+++.|.+|++.|. ++.++.+.+.+.
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~   45 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIA   45 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHH
Confidence            577788875 3 344455567889999998 567777665443

>PRK08589 short chain dehydrogenase; Validated

Probab=80.79  E-value=9.5  Score=31.04  Aligned_cols=77  Identities=23%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             CCCCcEEEeCCcccHHHHH----HHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++++|=.|++.|+ |..    +++.|++|++++.++.++.+...+...             ..++.+...|..+....
T Consensus         4 l~~k~vlItGas~gI-G~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~~   69 (272)
T PRK08589          4 LENKVAVITGASTGI-GQASAIALAQEGAYVLAVDIAEAVSETVDKIKSN-------------GGKAKAYHVDISDEQQV   69 (272)
T ss_pred             CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhc-------------CCeEEEEEeecCCHHHH
Confidence            467889989987654 333    345689999998654333333333221             23567777787765432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ...++.|+++.+.-
T Consensus        70 ~~~~~~~~~~~g~id~li~~Ag   91 (272)
T PRK08589         70 KDFASEIKEQFGRVDVLFNNAG   91 (272)
T ss_pred             HHHHHHHHHHcCCcCEEEECCC
Confidence            1       11246898888764

>PRK06125 short chain dehydrogenase; Provisional

Probab=80.75  E-value=10  Score=30.49  Aligned_cols=78  Identities=24%  Similarity=0.342  Sum_probs=46.7

Q ss_pred             CCCCcEEEeCCcccHHHHH----HHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ++++++|=.|++.|+ |..    +++.|++|++++. ++.++.+...+....            ..++.+...|..+...
T Consensus         5 ~~~k~vlItG~~~gi-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~   71 (259)
T PRK06125          5 LAGKRVLITGASKGI-GAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH------------GVDVAVHALDLSSPEA   71 (259)
T ss_pred             CCCCEEEEeCCCchH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc------------CCceEEEEecCCCHHH
Confidence            467899999986553 333    3456889999987 444444443333221            2356777777766543


Q ss_pred             cc---ccCCCccEEEEecC
Q 027659          138 IK---AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~---~~~~~fD~V~~~d~  153 (220)
                      ..   ...++.|+++.+.-
T Consensus        72 ~~~~~~~~g~id~lv~~ag   90 (259)
T PRK06125         72 REQLAAEAGDIDILVNNAG   90 (259)
T ss_pred             HHHHHHHhCCCCEEEECCC
Confidence            21   11256898887754

>PRK05866 short chain dehydrogenase; Provisional

Probab=80.59  E-value=5.2  Score=33.18  Aligned_cols=78  Identities=24%  Similarity=0.346  Sum_probs=46.6

Q ss_pred             CCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...++++|=.|++.|+ |..++    +.|++|++++. .+.++.+...+...             ...+.+...|..+.+
T Consensus        37 ~~~~k~vlItGasggI-G~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~-------------~~~~~~~~~Dl~d~~  102 (293)
T PRK05866         37 DLTGKRILLTGASSGI-GEAAAEQFARRGATVVAVARREDLLDAVADRITRA-------------GGDAMAVPCDLSDLD  102 (293)
T ss_pred             CCCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHH
Confidence            3467889999986554 44433    45889999987 44444444333221             134667777776654


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ..-+..|+|+.+.-
T Consensus       103 ~v~~~~~~~~~~~g~id~li~~AG  126 (293)
T PRK05866        103 AVDALVADVEKRIGGVDILINNAG  126 (293)
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            321       11247899988754

>PRK08265 short chain dehydrogenase; Provisional

Probab=80.32  E-value=21  Score=28.78  Aligned_cols=74  Identities=18%  Similarity=0.121  Sum_probs=44.0

Q ss_pred             CCCCcEEEeCCcccHHHHHH----HHhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+++++|=.|+..| +|..+    ++.|++|+++|.+ +.++.+..   ..             ..++.+...|..+.+.
T Consensus         4 ~~~k~vlItGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~-------------~~~~~~~~~Dl~~~~~   66 (261)
T PRK08265          4 LAGKVAIVTGGATL-IGAAVARALVAAGARVAIVDIDADNGAAVAA---SL-------------GERARFIATDITDDAA   66 (261)
T ss_pred             CCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---Hh-------------CCeeEEEEecCCCHHH
Confidence            46788999997554 34433    4558999999873 32222211   11             1256777888877653


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ...+..|+++.+.-
T Consensus        67 ~~~~~~~~~~~~g~id~lv~~ag   89 (261)
T PRK08265         67 IERAVATVVARFGRVDILVNLAC   89 (261)
T ss_pred             HHHHHHHHHHHhCCCCEEEECCC
Confidence            21       11246899887754

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=80.31  E-value=0.98  Score=34.36  Aligned_cols=100  Identities=14%  Similarity=0.185  Sum_probs=56.0

Q ss_pred             CCcEEEeCCcccHHHHHHHHhCCe-EEEecchh--hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQIE--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      |++.+=+|+..=.+=..+.+.||. |+.+++..  .-+..+..+..-              ..+.+. -+|.      ..
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~ssi--------------~p~df~-~~~~------~y   60 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRLSSI--------------LPVDFA-KNWQ------KY   60 (177)
T ss_pred             CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccccccccc--------------cHHHHH-HHHH------Hh
Confidence            577888888876666677777875 88888643  111111110000              000110 0121      12


Q ss_pred             CCCccEEEEecC--------CCCC----ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          142 APPFDYIIGTDV--------YAEH----LLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       142 ~~~fD~V~~~d~--------y~~~----~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      .++||++.+.-.        |.+.    --..-+..++.+||+||.++++.|.-.+
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d  116 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTD  116 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCc
Confidence            456887766543        2221    1334566778889999999999886654

>PRK07035 short chain dehydrogenase; Provisional

Probab=80.20  E-value=8.7  Score=30.63  Aligned_cols=79  Identities=19%  Similarity=0.280  Sum_probs=46.0

Q ss_pred             CCCCCcEEEeCCcccHHHH---HHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGF---GMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l---~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++++|=.|++.|+-.-   .+++.|++|++++. .+.++.+...+...             ..++.+...|..+...
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~   71 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA-------------GGKAEALACHIGEMEQ   71 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEcCCCCHHH
Confidence            3567889999988654322   23345889999997 44444443333221             1345666777766543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+..
T Consensus        72 ~~~~~~~~~~~~~~id~li~~ag   94 (252)
T PRK07035         72 IDALFAHIRERHGRLDILVNNAA   94 (252)
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11246899886553

>PRK07890 short chain dehydrogenase; Provisional

Probab=80.10  E-value=7.6  Score=31.03  Aligned_cols=76  Identities=25%  Similarity=0.265  Sum_probs=45.3

Q ss_pred             CCCcEEEeCCcccHHHHH----HHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      +++++|=.|++.|+ |..    ++..|++|+++|. ++-++.+...+...             ..++.+...|..+.+..
T Consensus         4 ~~k~vlItGa~~~I-G~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~~   69 (258)
T PRK07890          4 KGKVVVVSGVGPGL-GRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL-------------GRRALAVPTDITDEDQC   69 (258)
T ss_pred             CCCEEEEECCCCcH-HHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh-------------CCceEEEecCCCCHHHH
Confidence            56789988876544 443    3345889999997 43333333333221             23567788887665432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ..-+..|+|+.+..
T Consensus        70 ~~~~~~~~~~~g~~d~vi~~ag   91 (258)
T PRK07890         70 ANLVALALERFGRVDALVNNAF   91 (258)
T ss_pred             HHHHHHHHHHcCCccEEEECCc
Confidence            1       11246899988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	1e-26
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	2e-04

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score =  102 bits (255), Expect = 1e-26
 Identities = 38/189 (20%), Positives = 67/189 (35%), Gaps = 21/189 (11%)

Query: 17  EVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCG 76
             L   +Q           + VW  +      L          P  + GK V ELGAG G
Sbjct: 39  APLQCSVQVQTTQEHPLWTSHVWSGARALADTLCWQ-------PELIAGKTVCELGAGAG 91

Query: 77  VAGFGMALLGCN-VITTD--QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG 133
           +      L G + V+ TD    E+L  L+ N+  +T+  +  +  +    S + V   WG
Sbjct: 92  LVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTA--NSCSSETVKRASPKVVPYRWG 149

Query: 134 N---EDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFAL-----SGPKTTILLGYEIRS 184
           +             F  ++  D+       + LL+++  L     + P    L+ +    
Sbjct: 150 DSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHR 209

Query: 185 TSVHEQMLQ 193
             + E+ L 
Sbjct: 210 PHLAERDLA 218

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 16/103 (15%)

Query: 56  GRFCPSKLKGKRVIELGAGCGVAGFGMA--LLGCNVITTD-QIEVLPLLKRNVEWNTSRI 112
                   +  R+ +LGAG G AG  +A  L    V   +   E+    +R++E      
Sbjct: 29  ASLVADD-RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLE------ 81

Query: 113 SQMNPGSDLLGSIQAVELDW--GNEDHIKAVAPP--FDYIIGT 151
             +   +     I+ +E D     +  ++A  P   F ++I  
Sbjct: 82  --LPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMN 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 36/248 (14%), Positives = 70/248 (28%), Gaps = 66/248 (26%)

Query: 24  QFSQDPNSKHLGTT--------VWDASVVFVKYL---EKNCRKGRFCPSKLKGKRVIELG 72
               +     + T         +++ + VF KY     +   K R    +L+  + + + 
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI- 155

Query: 73  AGCGVAGFG---MALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-- 127
              GV G G   +AL  C        +V   +   + W    +   N    +L  +Q   
Sbjct: 156 --DGVLGSGKTWVALDVCL-----SYKVQCKMDFKIFWLN--LKNCNSPETVLEMLQKLL 206

Query: 128 --VELDW-GNEDHIKAVAPPFD------------------YIIGTDVYAEHLLEP----- 161
             ++ +W    DH   +                        ++  +V             
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 162 --LLQT-----IFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK---LVPKAKEST 211
             LL T        LS   TT +       T   +++  +     + +   L  +     
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-- 324

Query: 212 MWGNPLGL 219
              NP  L
Sbjct: 325 --TNPRRL 330

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 15/98 (15%), Positives = 36/98 (36%), Gaps = 14/98 (14%)

Query: 56  GRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTD-QIEVLPLLKRNVEWNTSRIS 113
            +F    ++  ++I+L +G G+    ++      ++  + Q  +  + KR+V +N     
Sbjct: 41  AKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYN----- 95

Query: 114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGT 151
                  L   I+ +E D      +       D +   
Sbjct: 96  ------QLEDQIEIIEYDLKKITDLIP-KERADIVTCN 126

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.89
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.79
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.74
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.7
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.7
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.69
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.69
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.68
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.67
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.67
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.67
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.67
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.66
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.66
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.66
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.66
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.66
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.66
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.66
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.65
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.65
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.65
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.64
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.64
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.64
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.64
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.64
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.64
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.63
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.63
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.63
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.63
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.63
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.63
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.62
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.62
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.62
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.62
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.61
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.61
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.61
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.61
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.61
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.61
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.61
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.61
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.6
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.6
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.6
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.6
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.6
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.59
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.59
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.59
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.59
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.59
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.59
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.59
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.59
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.58
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.58
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.58
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.57
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.57
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.57
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.57
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.57
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.57
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.57
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.57
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.56
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.56
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.56
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.56
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.55
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.55
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.55
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.55
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.55
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.55
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.55
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.54
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.54
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.54
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.53
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.53
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.53
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.53
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.53
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.53
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.53
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.53
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.53
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.53
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.52
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.52
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.52
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.52
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.51
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.51
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.51
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.51
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.51
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.51
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.51
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.51
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.5
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.5
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.5
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.5
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.5
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.5
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.5
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.49
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.49
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.49
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.49
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.49
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.48
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.48
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.48
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.48
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.47
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.47
3ocj_A	305	Putative exported protein; structural genomics, PS	99.47
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.47
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.46
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.46
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.46
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.46
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.46
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.46
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.45
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.45
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.45
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.45
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.45
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.45
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.44
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.44
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.44
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.44
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.44
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.44
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.43
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.43
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.43
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.43
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.43
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.42
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.42
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.42
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.42
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.42
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.41
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.41
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.41
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.4
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.4
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.4
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.39
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.39
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.39
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.39
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.39
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.39
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.39
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.39
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.39
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.38
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.38
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.38
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.38
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.38
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.38
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.38
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.37
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.37
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.37
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.37
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.37
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.36
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.36
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.36
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.36
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.36
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.36
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.35
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.35
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.35
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.34
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.34
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.34
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.33
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.33
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.33
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.32
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.32
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.31
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.31
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.3
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.3
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.3
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.3
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.3
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.3
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.3
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.3
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.29
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.29
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.28
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.28
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.27
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.26
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.25
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.25
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.25
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.25
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.24
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.24
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.24
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.24
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.23
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.23
2o07_A	304	Spermidine synthase; structural genomics, structur	99.23
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.22
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.21
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.21
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.2
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.2
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.2
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.19
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.18
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.18
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.18
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.17
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.16
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.16
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.15
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.13
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.12
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.1
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.1
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.08
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.06
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.06
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.06
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.06
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.06
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.05
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.05
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.03
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.99
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.98
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.98
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.96
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.95
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.95
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.94
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.93
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.9
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.88
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.86
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.85
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.83
3lkd_A	542	Type I restriction-modification system methyltrans	98.81
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.8
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.79
3khk_A	544	Type I restriction-modification system methylation	98.75
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.72
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.71
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.67
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.65
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.64
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.62
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.48
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.46
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.37
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.23
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.21
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.08
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.06
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.03
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.01
3ufb_A	530	Type I restriction-modification system methyltran	98.0
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.97
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.93
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.9
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.89
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.8
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.76
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.74
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.47
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.43
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.4
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	97.37
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	97.31
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.26
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.22
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.18
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.06
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.41
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.27
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	96.25
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.21
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.05
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	95.97
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.88
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.64
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.63
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.35
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.3
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	95.23
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	94.54
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	93.91
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	93.79
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	93.5
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	93.21
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	93.11
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	93.05
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	92.33
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.29
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.26
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	92.13
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	91.52
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.44
2zig_A	297	TTHA0409, putative modification methylase; methylt	91.29
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	91.21
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	90.99
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	90.97
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	90.75
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.73
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	90.52
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	90.16
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	90.15
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	90.09
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	90.08
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	90.01
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	89.95
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	89.88
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	89.64
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	89.51
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	89.44
3imf_A	257	Short chain dehydrogenase; structural genomics, in	89.39
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	89.32
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	89.11
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	88.99
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	88.85
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	88.79
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	88.59
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	88.58
3me5_A	482	Cytosine-specific methyltransferase; structural ge	88.56
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	88.55
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	88.45
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	88.45
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	88.41
3c85_A	183	Putative glutathione-regulated potassium-efflux S	88.37
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	88.29
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	88.25
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	88.18
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	88.15
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	88.13
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	88.11
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	88.1
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	88.05
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	88.03
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	88.02
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	88.01
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	88.01
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	87.99
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	87.81
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	87.68
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	87.57
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	87.56
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	87.55
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	87.54
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	87.49
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	87.34
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	87.29
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	87.29
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	87.04
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	87.02
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	87.0
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	86.92
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	86.73
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	86.72
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	86.68
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	86.64
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	86.63
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	86.63
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	86.59
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	86.58
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	86.49
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	86.47
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	86.42
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	86.27
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	86.26
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	86.06
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	86.04
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	86.01
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	85.97
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	85.66
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	85.57
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	85.52
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	85.45
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	85.37
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	85.37
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	85.36
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	85.29
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	85.25
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	85.24
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	85.17
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	85.16
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	85.03
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	84.88
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	84.64
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	84.58
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	84.52
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	84.43
1xq1_A	266	Putative tropinone reducatse; structural genomics,	84.36
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	84.22
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	84.15
3cxt_A	291	Dehydrogenase with different specificities; rossma	84.07
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	83.97
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	83.96
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	83.92
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	83.92
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	83.86
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	83.81
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	83.78
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	83.77
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	83.71
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	83.53
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	83.48
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	83.42
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	83.32
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	83.29
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	83.26
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	83.1
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	83.03
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	83.02
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	83.02
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	82.8
1xkq_A	280	Short-chain reductase family member (5D234); parra	82.76
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	82.68
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	82.66
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	82.54
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	82.51
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	82.28
1spx_A	278	Short-chain reductase family member (5L265); paral	82.2
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	82.2
3rih_A	293	Short chain dehydrogenase or reductase; structural	82.18
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	82.04
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	82.03
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	82.03
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	82.02
4dqx_A	277	Probable oxidoreductase protein; structural genomi	81.97
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	81.9
1xhl_A	297	Short-chain dehydrogenase/reductase family member	81.73
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	81.53
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	81.48
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	81.45
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	81.42
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	81.4
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	81.3
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	81.26
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	81.17
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	81.09
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	81.06
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	81.05
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	81.04
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	80.74
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	80.5
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	80.37
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	80.36
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	80.31
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	80.21
3gms_A	340	Putative NADPH:quinone reductase; structural genom	80.17
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	80.15
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	80.02

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.89  E-value=1.1e-22  Score=167.67  Aligned_cols=176  Identities=19%  Similarity=0.276  Sum_probs=118.8

Q ss_pred             CccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-h-hhHHHHHHHHHH
Q 027659           31 SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-I-EVLPLLKRNVEW  107 (220)
Q Consensus        31 ~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~-~~l~~~~~n~~~  107 (220)
                      ...+|..+|+++..|++++....       ....+++|||||||+|.+++.+++.|+ +|+++|+ + ++++.+++|+..
T Consensus        53 ~~~~g~~~~~~~~~l~~~l~~~~-------~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~  125 (281)
T 3bzb_A           53 HPLWTSHVWSGARALADTLCWQP-------ELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIRE  125 (281)
T ss_dssp             ---------CHHHHHHHHHHHCG-------GGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHT
T ss_pred             CCCCCceeecHHHHHHHHHHhcc-------hhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHH
Confidence            34568899999999999999863       345788999999999999999999887 7999999 4 599999999955


Q ss_pred             hhhhhccCCCCCCCCCceEEEEeeeCCCCC-ccc--cCCCccEEEEecC-CCCCChHHHHHHHHHhhC---C--CcEEEE
Q 027659          108 NTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA--VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSG---P--KTTILL  178 (220)
Q Consensus       108 n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~~--~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~---~--~g~~~i  178 (220)
                      |........  .....++.+..++|++... ...  ..++||+|+++++ |+......+++.+.++|+   |  ||.+++
T Consensus       126 N~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          126 HTANSCSSE--TVKRASPKVVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             TCC------------CCCEEEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             hhhhhcccc--cCCCCCeEEEEecCCCccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            522100000  0001478999999998532 211  2568999999999 999999999999999999   9  999888


Q ss_pred             EEEecCch---HHHHHHHHHh-cC-CeEEEe-eCCCCCcccCC
Q 027659          179 GYEIRSTS---VHEQMLQMWK-SN-FNVKLV-PKAKESTMWGN  215 (220)
Q Consensus       179 ~~~~r~~~---~~~~f~~~~~-~~-f~v~~v-~~~~~~~~~~~  215 (220)
                      ++..+...   ....|++.++ .+ |+++.+ ....+...|..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~l~~~G~f~v~~~~~~~~~~~~f~~  246 (281)
T 3bzb_A          204 TFTHHRPHLAERDLAFFRLVNADGALIAEPWLSPLQMDPMFPD  246 (281)
T ss_dssp             EECC--------CTHHHHHHHHSTTEEEEEEECCC--------
T ss_pred             EEEeeecccchhHHHHHHHHHhcCCEEEEEecccccccccccc
Confidence            87665432   2356777765 48 999888 34445555543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.79  E-value=1.8e-18  Score=140.54  Aligned_cols=172  Identities=14%  Similarity=0.202  Sum_probs=122.8

Q ss_pred             CCCCCCCCCcceEEEeecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCC-CCCcEEEeCCcccHHHH
Q 027659            2 EADRLNSPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKL-KGKRVIELGAGCGVAGF   80 (220)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~-~~~~vLELGcG~G~~~l   80 (220)
                      ....+....++++. .+.+..+.+.|.+..+..+..    +.+|+.|+.           .. ++.+|||+|||+|..++
T Consensus         2 ~~~k~~~~~~e~~d-~~~~~~~~i~q~~~~~~~~~d----~~ll~~~~~-----------~~~~~~~vLDlG~G~G~~~~   65 (259)
T 3lpm_A            2 SLEKLKLIGDERLD-YLLAENLRIIQSPSVFSFSID----AVLLAKFSY-----------LPIRKGKIIDLCSGNGIIPL   65 (259)
T ss_dssp             ---CCCCCTTCEEE-EETTTTEEEEEBTTTBCCCHH----HHHHHHHCC-----------CCSSCCEEEETTCTTTHHHH
T ss_pred             chhhhhcCCCCeec-cccCCCEEEEeCCCCccCcHH----HHHHHHHhc-----------CCCCCCEEEEcCCchhHHHH
Confidence            33444444444433 456678999999877777654    788887762           22 57899999999999999


Q ss_pred             HHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCC-
Q 027659           81 GMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAE-  156 (220)
Q Consensus        81 ~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~-  156 (220)
                      .+++.+. +|+++|+ +++++.+++|+..|+.           ..++++...|+.+.... ...++||+|+++++ +.. 
T Consensus        66 ~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~-----------~~~v~~~~~D~~~~~~~-~~~~~fD~Ii~npPy~~~~  133 (259)
T 3lpm_A           66 LLSTRTKAKIVGVEIQERLADMAKRSVAYNQL-----------EDQIEIIEYDLKKITDL-IPKERADIVTCNPPYFATP  133 (259)
T ss_dssp             HHHTTCCCEEEEECCSHHHHHHHHHHHHHTTC-----------TTTEEEECSCGGGGGGT-SCTTCEEEEEECCCC----
T ss_pred             HHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-----------cccEEEEECcHHHhhhh-hccCCccEEEECCCCCCCc
Confidence            9998876 8999999 6799999999999886           45789998776554211 12578999999998 443 


Q ss_pred             -------------------CChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEe
Q 027659          157 -------------------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV  204 (220)
Q Consensus       157 -------------------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v  204 (220)
                                         ..+..+++.+.++|+|||.+++..+...   ...+.+.+++ +|.+..+
T Consensus       134 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~---~~~~~~~l~~~~~~~~~~  198 (259)
T 3lpm_A          134 DTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPER---LLDIIDIMRKYRLEPKRI  198 (259)
T ss_dssp             -------------------HHHHHHHHHHHHHEEEEEEEEEEECTTT---HHHHHHHHHHTTEEEEEE
T ss_pred             cccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHH---HHHHHHHHHHCCCceEEE
Confidence                               1245799999999999999999764332   3455665543 6666443

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.74  E-value=1.3e-16  Score=136.60  Aligned_cols=155  Identities=20%  Similarity=0.290  Sum_probs=120.9

Q ss_pred             CCCcceEEEeecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC
Q 027659            8 SPSTSVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC   87 (220)
Q Consensus         8 ~~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~   87 (220)
                      .+...+.++.+.+..+++...++.+. +..+.+++..+.+++.....     ....++.+|||||||+|..++.+++.++
T Consensus       183 ~~~w~~~~~~~~g~~~~~~~~pgvFs-~~~~d~~t~~ll~~l~~~l~-----~~~~~~~~VLDlGcG~G~~~~~la~~g~  256 (381)
T 3dmg_A          183 PSLWRAFSARILGAEYTFHHLPGVFS-AGKVDPASLLLLEALQERLG-----PEGVRGRQVLDLGAGYGALTLPLARMGA  256 (381)
T ss_dssp             CCCCEEEEEEETTEEEEEEECTTCTT-TTSCCHHHHHHHHHHHHHHC-----TTTTTTCEEEEETCTTSTTHHHHHHTTC
T ss_pred             ccccceeeEEecCceEEEEeCCCcee-CCCCCHHHHHHHHHHHHhhc-----ccCCCCCEEEEEeeeCCHHHHHHHHcCC
Confidence            34556778889999999999986544 33466778888888875421     0234678999999999999999999999


Q ss_pred             eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC-----CCChH
Q 027659           88 NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA-----EHLLE  160 (220)
Q Consensus        88 ~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~-----~~~~~  160 (220)
                      +|+++|+ +.+++.+++|+..|+.             ++++...|+.+..   ...++||+|+++++ ++     .....
T Consensus       257 ~V~gvDis~~al~~A~~n~~~~~~-------------~v~~~~~D~~~~~---~~~~~fD~Ii~npp~~~~~~~~~~~~~  320 (381)
T 3dmg_A          257 EVVGVEDDLASVLSLQKGLEANAL-------------KAQALHSDVDEAL---TEEARFDIIVTNPPFHVGGAVILDVAQ  320 (381)
T ss_dssp             EEEEEESBHHHHHHHHHHHHHTTC-------------CCEEEECSTTTTS---CTTCCEEEEEECCCCCTTCSSCCHHHH
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCC-------------CeEEEEcchhhcc---ccCCCeEEEEECCchhhcccccHHHHH
Confidence            9999999 5699999999998875             4677776654432   22478999999998 44     34467


Q ss_pred             HHHHHHHHhhCCCcEEEEEEEecC
Q 027659          161 PLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       161 ~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      .+++.+.++|+|||.++++.....
T Consensus       321 ~~l~~~~~~LkpGG~l~iv~n~~l  344 (381)
T 3dmg_A          321 AFVNVAAARLRPGGVFFLVSNPFL  344 (381)
T ss_dssp             HHHHHHHHHEEEEEEEEEEECTTS
T ss_pred             HHHHHHHHhcCcCcEEEEEEcCCC
Confidence            899999999999999999875443

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.70  E-value=7e-16  Score=131.85  Aligned_cols=148  Identities=13%  Similarity=0.103  Sum_probs=109.2

Q ss_pred             ceEEEeecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeE
Q 027659           12 SVINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNV   89 (220)
Q Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v   89 (220)
                      ....+.+.+..+++.+.++.+.. ..+..++.++.+++.           ...+.+|||||||+|.+++.+++.  +.+|
T Consensus       182 ~~~~~~~~~~~~~~~~~pg~Fs~-~~~d~~~~~ll~~l~-----------~~~~~~VLDlGcG~G~~s~~la~~~p~~~V  249 (375)
T 4dcm_A          182 QTVSWKLEGTDWTIHNHANVFSR-TGLDIGARFFMQHLP-----------ENLEGEIVDLGCGNGVIGLTLLDKNPQAKV  249 (375)
T ss_dssp             SCEEEEETTTTEEEEECTTCTTC-SSCCHHHHHHHHTCC-----------CSCCSEEEEETCTTCHHHHHHHHHCTTCEE
T ss_pred             CceEEEecCCceEEEeCCCcccC-CcccHHHHHHHHhCc-----------ccCCCeEEEEeCcchHHHHHHHHHCCCCEE
Confidence            34577888889999999965543 244555666655553           224579999999999999999988  5789


Q ss_pred             EEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC-----CCChHHH
Q 027659           90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA-----EHLLEPL  162 (220)
Q Consensus        90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~-----~~~~~~l  162 (220)
                      +++|+ +.+++.+++|+..|+...         ..++++...|..+.    ...++||+|+++++ +.     ......+
T Consensus       250 ~gvD~s~~al~~Ar~n~~~ngl~~---------~~~v~~~~~D~~~~----~~~~~fD~Ii~nppfh~~~~~~~~~~~~~  316 (375)
T 4dcm_A          250 VFVDESPMAVASSRLNVETNMPEA---------LDRCEFMINNALSG----VEPFRFNAVLCNPPFHQQHALTDNVAWEM  316 (375)
T ss_dssp             EEEESCHHHHHHHHHHHHHHCGGG---------GGGEEEEECSTTTT----CCTTCEEEEEECCCC-------CCHHHHH
T ss_pred             EEEECcHHHHHHHHHHHHHcCCCc---------CceEEEEechhhcc----CCCCCeeEEEECCCcccCcccCHHHHHHH
Confidence            99999 569999999999987621         12567777655442    23568999999999 43     2223478


Q ss_pred             HHHHHHhhCCCcEEEEEEEecC
Q 027659          163 LQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       163 ~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ++.+.++|+|||.++++.....
T Consensus       317 l~~~~~~LkpgG~l~iv~n~~~  338 (375)
T 4dcm_A          317 FHHARRCLKINGELYIVANRHL  338 (375)
T ss_dssp             HHHHHHHEEEEEEEEEEEETTS
T ss_pred             HHHHHHhCCCCcEEEEEEECCc
Confidence            9999999999999999775443

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.70  E-value=2.7e-16  Score=125.00  Aligned_cols=127  Identities=22%  Similarity=0.318  Sum_probs=98.7

Q ss_pred             CCCCcEEEeCCc-ccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAG-CGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG-~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .++.+|||+||| +|..++.+++. +.+|+++|+ +++++.+++|+..++.             ++++...|+...... 
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~v~~~~~d~~~~~~~-  119 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-------------NVRLVKSNGGIIKGV-  119 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-------------CCEEEECSSCSSTTT-
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-------------CcEEEeCCchhhhhc-
Confidence            367899999999 99999999988 789999999 6699999999998864             678888776443333 


Q ss_pred             ccCCCccEEEEecCCCC-CC-------------------hHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cC
Q 027659          140 AVAPPFDYIIGTDVYAE-HL-------------------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SN  198 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~-~~-------------------~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~  198 (220)
                       ..++||+|+++++|.. ..                   +..+++.+.++|+|||.+++..+.+.. ....+.+.++ .+
T Consensus       120 -~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~l~~~g  197 (230)
T 3evz_A          120 -VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEK-LLNVIKERGIKLG  197 (230)
T ss_dssp             -CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHH-HHHHHHHHHHHTT
T ss_pred             -ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHh-HHHHHHHHHHHcC
Confidence             2478999999988432 21                   378899999999999999998776543 3456666664 47


Q ss_pred             CeEEEee
Q 027659          199 FNVKLVP  205 (220)
Q Consensus       199 f~v~~v~  205 (220)
                      |.++.+.
T Consensus       198 ~~~~~~~  204 (230)
T 3evz_A          198 YSVKDIK  204 (230)
T ss_dssp             CEEEEEE
T ss_pred             CceEEEE
Confidence            8887764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.69  E-value=6.7e-16  Score=123.74  Aligned_cols=121  Identities=13%  Similarity=0.094  Sum_probs=99.9

Q ss_pred             cccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccC
Q 027659           37 TVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (220)
Q Consensus        37 ~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (220)
                      ..|+++..+.+.+.           ..++.+|||+|||+|..+..++..+.+|+++|. +++++.+++++..++.     
T Consensus         5 ~~~~~~~~~~~~~~-----------~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----   68 (239)
T 1xxl_A            5 HHHHSLGLMIKTAE-----------CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-----   68 (239)
T ss_dssp             -CHHHHHHHHHHHT-----------CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-----
T ss_pred             ccCCCcchHHHHhC-----------cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-----
Confidence            35777777777774           347789999999999999999999989999999 6699999999988764     


Q ss_pred             CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       116 ~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                             .++.+...|+.+   .+..+++||+|+++.+ ++......+++.+.++|+|||.+++.....
T Consensus        69 -------~~v~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           69 -------ENVRFQQGTAES---LPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             -------CSEEEEECBTTB---CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             -------CCeEEEeccccc---CCCCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence                   468888876643   3334578999999999 777889999999999999999999976543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.69  E-value=3.3e-15  Score=114.89  Aligned_cols=157  Identities=19%  Similarity=0.239  Sum_probs=112.2

Q ss_pred             eEEEeecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEe
Q 027659           13 VINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITT   92 (220)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~   92 (220)
                      .+.-.+.+..+.+...++.+... .....+..+.+++.           ..++.+|||+|||+|..++.+++.+.+|+++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-----------~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~   80 (194)
T 1dus_A           13 IVEDILRGKKLKFKTDSGVFSYG-KVDKGTKILVENVV-----------VDKDDDILDLGCGYGVIGIALADEVKSTTMA   80 (194)
T ss_dssp             EEEEEETTEEEEEEEETTSTTTT-SCCHHHHHHHHHCC-----------CCTTCEEEEETCTTSHHHHHHGGGSSEEEEE
T ss_pred             EEeeecCCCceEEEeCCCcCCcc-ccchHHHHHHHHcc-----------cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEE
Confidence            35556788888887766433322 11223444444442           2267899999999999999999888899999


Q ss_pred             cc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC-CCChHHHHHHHHHh
Q 027659           93 DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA-EHLLEPLLQTIFAL  169 (220)
Q Consensus        93 D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~-~~~~~~l~~~l~~~  169 (220)
                      |. +++++.+++++..++..          ..++.+...|+.+..    ..++||+|+++.+ ++ ......+++.+.++
T Consensus        81 D~~~~~~~~a~~~~~~~~~~----------~~~~~~~~~d~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~  146 (194)
T 1dus_A           81 DINRRAIKLAKENIKLNNLD----------NYDIRVVHSDLYENV----KDRKYNKIITNPPIRAGKEVLHRIIEEGKEL  146 (194)
T ss_dssp             ESCHHHHHHHHHHHHHTTCT----------TSCEEEEECSTTTTC----TTSCEEEEEECCCSTTCHHHHHHHHHHHHHH
T ss_pred             ECCHHHHHHHHHHHHHcCCC----------ccceEEEECchhccc----ccCCceEEEECCCcccchhHHHHHHHHHHHH
Confidence            99 67999999999887651          013888887765532    2568999999888 43 35678899999999


Q ss_pred             hCCCcEEEEEEEecCchHHHHHHHHHhc
Q 027659          170 SGPKTTILLGYEIRSTSVHEQMLQMWKS  197 (220)
Q Consensus       170 l~~~g~~~i~~~~r~~~~~~~f~~~~~~  197 (220)
                      |+|||.+++....+..  ...+.+.+++
T Consensus       147 L~~gG~l~~~~~~~~~--~~~~~~~l~~  172 (194)
T 1dus_A          147 LKDNGEIWVVIQTKQG--AKSLAKYMKD  172 (194)
T ss_dssp             EEEEEEEEEEEESTHH--HHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCC--hHHHHHHHHH
Confidence            9999999998876543  2334444443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.68  E-value=5.2e-16  Score=125.14  Aligned_cols=106  Identities=17%  Similarity=0.090  Sum_probs=90.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++.+|||+|||+|..+..+++. +.+|+++|. +++++.+++++..++.           ..++.+...|+.+..   
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---   99 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV-----------SERVHFIHNDAAGYV---   99 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCCTTCC---
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEECChHhCC---
Confidence            446789999999999999999975 779999999 6799999999988765           357899987775532   


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      . .+.||+|++..+ ++......+++.+.++|+|||.+++..+.
T Consensus       100 ~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  142 (256)
T 1nkv_A          100 A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  142 (256)
T ss_dssp             C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence            2 578999999999 77778899999999999999999998754

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.67  E-value=2.2e-15  Score=121.54  Aligned_cols=122  Identities=11%  Similarity=0.038  Sum_probs=96.7

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      +.+..+...+....      +...++.+|||||||+|..++.+++.+. +|+++|+ +++++.+++++..++.       
T Consensus        28 ~~~~~~~~~~l~~l------~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------   94 (257)
T 3f4k_A           28 PGSPEATRKAVSFI------NELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANC-------   94 (257)
T ss_dssp             SCCHHHHHHHHTTS------CCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTC-------
T ss_pred             CCCHHHHHHHHHHH------hcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCC-------
Confidence            33444555554432      2334677999999999999999998865 8999999 6699999999998876       


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                          ..++++...|+.+.   +...++||+|+++.+ ++. ....+++.+.++|+|||.+++....
T Consensus        95 ----~~~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~  152 (257)
T 3f4k_A           95 ----ADRVKGITGSMDNL---PFQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEAS  152 (257)
T ss_dssp             ----TTTEEEEECCTTSC---SSCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred             ----CCceEEEECChhhC---CCCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence                35689998776443   334679999999999 766 6899999999999999999998754

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.67  E-value=4e-16  Score=120.64  Aligned_cols=110  Identities=16%  Similarity=0.208  Sum_probs=89.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .++.+|||||||+|..++.++..++ +|+++|+ +++++.+++|++.++.            .++++...|+.+... ..
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~-~~  109 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL------------SGATLRRGAVAAVVA-AG  109 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC------------SCEEEEESCHHHHHH-HC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC------------CceEEEEccHHHHHh-hc
Confidence            4788999999999999998888776 6999999 6799999999998874            478888876644311 01


Q ss_pred             cCCCccEEEEecCCCC--CChHHHHHHHHH--hhCCCcEEEEEEEecCc
Q 027659          141 VAPPFDYIIGTDVYAE--HLLEPLLQTIFA--LSGPKTTILLGYEIRST  185 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~--~~~~~l~~~l~~--~l~~~g~~~i~~~~r~~  185 (220)
                      ..++||+|+++++|+.  .....++..+.+  +|+|||.+++.+..+..
T Consensus       110 ~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~~  158 (189)
T 3p9n_A          110 TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTCA  158 (189)
T ss_dssp             CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEETTSC
T ss_pred             cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecCCCC
Confidence            2578999999988443  678899999999  99999999998876553

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.67  E-value=2.2e-16  Score=128.53  Aligned_cols=136  Identities=19%  Similarity=0.243  Sum_probs=101.7

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHH---hhhhhcc
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEW---NTSRISQ  114 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~---n~~~~~~  114 (220)
                      .+.+|+.|+.           ..++.+|||||||+|.+++.+++..  .+|+++|+ +++++.+++|+..   |+.    
T Consensus        24 D~~lL~~~~~-----------~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l----   88 (260)
T 2ozv_A           24 DAMLLASLVA-----------DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF----   88 (260)
T ss_dssp             HHHHHHHTCC-----------CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTT----
T ss_pred             HHHHHHHHhc-----------ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCC----
Confidence            4777887763           2356799999999999999999875  57999999 6799999999988   665    


Q ss_pred             CCCCCCCCCceEEEEeeeCCCCCc----cccCCCccEEEEecCCCCC-------------------ChHHHHHHHHHhhC
Q 027659          115 MNPGSDLLGSIQAVELDWGNEDHI----KAVAPPFDYIIGTDVYAEH-------------------LLEPLLQTIFALSG  171 (220)
Q Consensus       115 ~~~~~~~~~~v~~~~ldw~~~~~~----~~~~~~fD~V~~~d~y~~~-------------------~~~~l~~~l~~~l~  171 (220)
                             ..++.+...|+.+....    ....++||+|+++++|...                   .+..+++.+.++|+
T Consensus        89 -------~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lk  161 (260)
T 2ozv_A           89 -------SARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMV  161 (260)
T ss_dssp             -------GGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEE
T ss_pred             -------cceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcC
Confidence                   34689998777654210    1135689999999884332                   36789999999999


Q ss_pred             CCcEEEEEEEecCchHHHHHHHHHhcCCeE
Q 027659          172 PKTTILLGYEIRSTSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       172 ~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v  201 (220)
                      |||.+++..+..   ....+++.+++.|..
T Consensus       162 pgG~l~~~~~~~---~~~~~~~~l~~~~~~  188 (260)
T 2ozv_A          162 SGGQLSLISRPQ---SVAEIIAACGSRFGG  188 (260)
T ss_dssp             EEEEEEEEECGG---GHHHHHHHHTTTEEE
T ss_pred             CCCEEEEEEcHH---HHHHHHHHHHhcCCc
Confidence            999999976543   245667777655544

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.67  E-value=6.9e-16  Score=125.11  Aligned_cols=152  Identities=20%  Similarity=0.244  Sum_probs=111.0

Q ss_pred             EEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHH
Q 027659           23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLL  101 (220)
Q Consensus        23 ~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~  101 (220)
                      +.+.-+|+ ..+|.-.++.+..+.+++...         ..++.+|||+|||+|.+++.+++.|++|+++|+ +.+++.+
T Consensus        89 ~~~~l~p~-~~fgtg~~~tt~~~~~~l~~~---------~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a  158 (254)
T 2nxc_A           89 IPLVIEPG-MAFGTGHHETTRLALKALARH---------LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQA  158 (254)
T ss_dssp             EEEECCCC------CCSHHHHHHHHHHHHH---------CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHH
T ss_pred             eEEEECCC-ccccCCCCHHHHHHHHHHHHh---------cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHH
Confidence            44555563 334444567777888888654         235789999999999999999999999999999 6799999


Q ss_pred             HHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          102 KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       102 ~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ++|+..|+.             .+++...|+.+.  .  ..++||+|+++.+.  ..+..++..+.++|+|||.++++..
T Consensus       159 ~~n~~~~~~-------------~v~~~~~d~~~~--~--~~~~fD~Vv~n~~~--~~~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          159 EANAKRNGV-------------RPRFLEGSLEAA--L--PFGPFDLLVANLYA--ELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             HHHHHHTTC-------------CCEEEESCHHHH--G--GGCCEEEEEEECCH--HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHcCC-------------cEEEEECChhhc--C--cCCCCCEEEECCcH--HHHHHHHHHHHHHcCCCCEEEEEee
Confidence            999998875             267776555432  1  24689999998762  1267889999999999999999876


Q ss_pred             ecCchHHHHHHHHHhc-CCeEEEee
Q 027659          182 IRSTSVHEQMLQMWKS-NFNVKLVP  205 (220)
Q Consensus       182 ~r~~~~~~~f~~~~~~-~f~v~~v~  205 (220)
                      ....  .+.+.+.+++ +|++..+.
T Consensus       220 ~~~~--~~~v~~~l~~~Gf~~~~~~  242 (254)
T 2nxc_A          220 LKDR--APLVREAMAGAGFRPLEEA  242 (254)
T ss_dssp             EGGG--HHHHHHHHHHTTCEEEEEE
T ss_pred             ccCC--HHHHHHHHHHCCCEEEEEe
Confidence            5543  3566666654 79887654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.66  E-value=9.2e-16  Score=117.94  Aligned_cols=130  Identities=15%  Similarity=0.007  Sum_probs=90.2

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||+|||+|..++.+++.+.+|+++|+ +++++.+++|+..++.            .++++...+......  .
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~------------~~v~~~~~~~~~l~~--~   85 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI------------ENTELILDGHENLDH--Y   85 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC------------CCEEEEESCGGGGGG--T
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCcHHHHHh--h
Confidence            346789999999999999999998889999999 6699999999998864            467887743332111  2


Q ss_pred             cCCCccEEEEecCCCC----------CChHHHHHHHHHhhCCCcEEEEEEEecCch------HHHHHHHHHh-cCCeEEE
Q 027659          141 VAPPFDYIIGTDVYAE----------HLLEPLLQTIFALSGPKTTILLGYEIRSTS------VHEQMLQMWK-SNFNVKL  203 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~----------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~------~~~~f~~~~~-~~f~v~~  203 (220)
                      .+++||+|+++..|.+          .....+++.+.++|+|||.+++........      ....|++.+. ..|.+..
T Consensus        86 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  165 (185)
T 3mti_A           86 VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAML  165 (185)
T ss_dssp             CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC------CHHHHHHHHHHHHSCTTTEEEEE
T ss_pred             ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE
Confidence            3568999998854322          234567788899999999998875432221      1234444443 3577765


Q ss_pred             ee
Q 027659          204 VP  205 (220)
Q Consensus       204 v~  205 (220)
                      +.
T Consensus       166 ~~  167 (185)
T 3mti_A          166 YQ  167 (185)
T ss_dssp             EE
T ss_pred             eh
Confidence            54

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.66  E-value=3e-15  Score=124.56  Aligned_cols=108  Identities=7%  Similarity=-0.089  Sum_probs=91.0

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ...+.+|||+|||+|..++.+++. +++|+++|+ +++++.+++|+..++.           ..++.+...|..+.   +
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---~  180 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRI-----------DDHVRSRVCNMLDT---P  180 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC---C
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCceEEEECChhcC---C
Confidence            446789999999999999999987 889999999 6799999999998876           45789998766543   3


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ...+.||+|+++.+ ++.. ...+++.+.++|+|||.+++......
T Consensus       181 ~~~~~fD~V~~~~~l~~~~-~~~~l~~~~~~LkpgG~l~~~~~~~~  225 (312)
T 3vc1_A          181 FDKGAVTASWNNESTMYVD-LHDLFSEHSRFLKVGGRYVTITGCWN  225 (312)
T ss_dssp             CCTTCEEEEEEESCGGGSC-HHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred             CCCCCEeEEEECCchhhCC-HHHHHHHHHHHcCCCcEEEEEEcccc
Confidence            34579999999999 5554 99999999999999999998875443

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.66  E-value=1.3e-16  Score=135.91  Aligned_cols=102  Identities=19%  Similarity=0.261  Sum_probs=85.9

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++|++|||||||+|++++.+|+.||+ |+++|.+++++.++++++.|++           ..+|++...+..+.   .
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~-----------~~~i~~i~~~~~~~---~  145 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGL-----------EDRVHVLPGPVETV---E  145 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC-----------TTTEEEEESCTTTC---C
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCC-----------CceEEEEeeeeeee---c
Confidence            4568999999999999999999999985 9999997799999999999987           56899998555443   2


Q ss_pred             ccCCCccEEEEecC----CCCCChHHHHHHHHHhhCCCcEEE
Q 027659          140 AVAPPFDYIIGTDV----YAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       140 ~~~~~fD~V~~~d~----y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                       .+++||+|++...    .+...++.++....++|+|||.++
T Consensus       146 -lpe~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i  186 (376)
T 4hc4_A          146 -LPEQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL  186 (376)
T ss_dssp             -CSSCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred             -CCccccEEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence             3578999998544    566789999999999999998765

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.66  E-value=1.4e-15  Score=124.73  Aligned_cols=107  Identities=21%  Similarity=0.230  Sum_probs=90.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||||||+|..+..++..|.+|+++|+ +++++.+++++..++.           ..++.+...|+.+...  ...
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~~  134 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGV-----------SDNMQFIHCAAQDVAS--HLE  134 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CC-----------GGGEEEEESCGGGTGG--GCS
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CcceEEEEcCHHHhhh--hcC
Confidence            4679999999999999999999999999999 6699999999887764           3578898877655432  246


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ++||+|+++.+ ++......+++.+.++|+|||.+++....+
T Consensus       135 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  176 (285)
T 4htf_A          135 TPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNA  176 (285)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBH
T ss_pred             CCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCC
Confidence            78999999999 777889999999999999999999988643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.66  E-value=3e-15  Score=121.12  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=88.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||||||+|..+..+++.+.+|+++|. +++++.+++++..++.            .++.+...|..+   ++..+
T Consensus        37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~------------~~v~~~~~d~~~---l~~~~  101 (260)
T 1vl5_A           37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH------------QQVEYVQGDAEQ---MPFTD  101 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCC-C---CCSCT
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC------------CceEEEEecHHh---CCCCC
Confidence            6789999999999999999999889999999 6699999999887764            468888866544   33346


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ++||+|+++.+ ++..+...+++.+.++|+|||.+++....
T Consensus       102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A          102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            79999999999 77788999999999999999999997654

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.66  E-value=4.4e-16  Score=122.06  Aligned_cols=157  Identities=14%  Similarity=-0.017  Sum_probs=101.0

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      ...|.+|+...        ...++.+|||+|||+|..+..+|+.|.+|+++|+ ++|++.++++...+............
T Consensus         8 ~~~l~~~~~~l--------~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~   79 (203)
T 1pjz_A            8 NKDLQQYWSSL--------NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY   79 (203)
T ss_dssp             THHHHHHHHHH--------CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEE
T ss_pred             CHHHHHHHHhc--------ccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccc
Confidence            45666776543        2336789999999999999999999999999999 56999998765421000000000000


Q ss_pred             CCCceEEEEeeeCCCCCccccC-CCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecCc---------hH
Q 027659          121 LLGSIQAVELDWGNEDHIKAVA-PPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRST---------SV  187 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~-~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~~---------~~  187 (220)
                      ...++++.+.|..+.   +... ++||+|++..+ ++.  .....+++.+.++|+|||.+++.......         -.
T Consensus        80 ~~~~v~~~~~d~~~l---~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~~~~~~~  156 (203)
T 1pjz_A           80 AAPGIEIWCGDFFAL---TARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVP  156 (203)
T ss_dssp             ECSSSEEEEECCSSS---THHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCC
T ss_pred             cCCccEEEECccccC---CcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCCCCCCCC
Confidence            024688888766543   2222 68999999887 432  33567899999999999985544322110         01


Q ss_pred             HHHHHHHHhcCCeEEEeeCCCC
Q 027659          188 HEQMLQMWKSNFNVKLVPKAKE  209 (220)
Q Consensus       188 ~~~f~~~~~~~f~v~~v~~~~~  209 (220)
                      .+.+.+.++.+|++..+.....
T Consensus       157 ~~el~~~~~~gf~i~~~~~~~~  178 (203)
T 1pjz_A          157 QTWLHRVMSGNWEVTKVGGQDT  178 (203)
T ss_dssp             HHHHHHTSCSSEEEEEEEESSC
T ss_pred             HHHHHHHhcCCcEEEEeccccc
Confidence            3455566655898877765543

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.66  E-value=1.3e-15  Score=119.12  Aligned_cols=151  Identities=19%  Similarity=0.206  Sum_probs=110.6

Q ss_pred             EEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHH
Q 027659           23 LQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPL  100 (220)
Q Consensus        23 ~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~  100 (220)
                      ..+..+++ ..++...++.+..+.+++....         .++.+|||+|||+|..++.+++.+. +|+++|. +++++.
T Consensus        29 ~~~~~~~~-~~f~~~~~~~~~~~~~~l~~~~---------~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~   98 (205)
T 3grz_A           29 EIIRLDPG-LAFGTGNHQTTQLAMLGIERAM---------VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTA   98 (205)
T ss_dssp             EEEEESCC------CCHHHHHHHHHHHHHHC---------SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHH
T ss_pred             eeEEecCC-cccCCCCCccHHHHHHHHHHhc---------cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            44444442 2233335677788888887542         2578999999999999999998876 7999999 669999


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       101 ~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      +++|+..++.            .++++...|+.+.     ..++||+|+++.+ .+   +..+++.+.++|+|||.+++.
T Consensus        99 a~~~~~~~~~------------~~v~~~~~d~~~~-----~~~~fD~i~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~  158 (205)
T 3grz_A           99 AEENAALNGI------------YDIALQKTSLLAD-----VDGKFDLIVANILAEI---LLDLIPQLDSHLNEDGQVIFS  158 (205)
T ss_dssp             HHHHHHHTTC------------CCCEEEESSTTTT-----CCSCEEEEEEESCHHH---HHHHGGGSGGGEEEEEEEEEE
T ss_pred             HHHHHHHcCC------------CceEEEecccccc-----CCCCceEEEECCcHHH---HHHHHHHHHHhcCCCCEEEEE
Confidence            9999998875            2488888776543     3578999999987 32   578888889999999999997


Q ss_pred             EEecCchHHHHHHHHHh-cCCeEEEee
Q 027659          180 YEIRSTSVHEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       180 ~~~r~~~~~~~f~~~~~-~~f~v~~v~  205 (220)
                      ......  .+.+.+.++ .+|++..+.
T Consensus       159 ~~~~~~--~~~~~~~~~~~Gf~~~~~~  183 (205)
T 3grz_A          159 GIDYLQ--LPKIEQALAENSFQIDLKM  183 (205)
T ss_dssp             EEEGGG--HHHHHHHHHHTTEEEEEEE
T ss_pred             ecCccc--HHHHHHHHHHcCCceEEee
Confidence            655443  345556664 478876654

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.65  E-value=2.8e-15  Score=121.90  Aligned_cols=106  Identities=12%  Similarity=0.043  Sum_probs=90.1

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++.+|||||||+|..++.+++.+. +|+++|+ +.+++.+++++..++.           ..++++...|+.+.   +
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---~  109 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGL-----------QNRVTGIVGSMDDL---P  109 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC---C
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CcCcEEEEcChhhC---C
Confidence            34678999999999999999998755 8999999 6699999999988876           45799999777543   2


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ...++||+|+++.+ ++. ....+++.+.++|+|||.+++....
T Consensus       110 ~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~  152 (267)
T 3kkz_A          110 FRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS  152 (267)
T ss_dssp             CCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred             CCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence            34678999999999 666 7899999999999999999998764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.65  E-value=7.5e-15  Score=121.54  Aligned_cols=106  Identities=15%  Similarity=0.125  Sum_probs=89.1

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++.+|||||||+|..++.+++. |.+|+++|+ +++++.+++++..++.           ..++++...|+.+.    
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~----  134 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS-----------PRRKEVRIQGWEEF----  134 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCC-----------SSCEEEEECCGGGC----
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECCHHHc----
Confidence            346789999999999999999987 889999999 6699999999988765           45789988776543    


Q ss_pred             ccCCCccEEEEecC-CCC---------CChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          140 AVAPPFDYIIGTDV-YAE---------HLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~---------~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                        .++||+|+++.+ ++.         .....+++.+.++|+|||.+++......
T Consensus       135 --~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          135 --DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             --CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             --CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence              578999999999 554         3458999999999999999999876544

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.65  E-value=2.2e-15  Score=120.23  Aligned_cols=128  Identities=15%  Similarity=0.056  Sum_probs=99.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..+..++..+.+|+++|+ +.+++.+++++..++.           ..++++...|+.+..    ..
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~----~~  130 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPK-----------AEYFSFVKEDVFTWR----PT  130 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGG-----------GGGEEEECCCTTTCC----CS
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCC-----------CcceEEEECchhcCC----CC
Confidence            4469999999999999999998889999999 6699999998876443           357899987776543    34


Q ss_pred             CCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEecCc--------hHHHHHHHHHhc-CCeEEEeeC
Q 027659          143 PPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEIRST--------SVHEQMLQMWKS-NFNVKLVPK  206 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r~~--------~~~~~f~~~~~~-~f~v~~v~~  206 (220)
                      ..||+|+++.+ ++..  ....+++.+.++|+|||.+++.......        ...+.+.+.+++ +|++..+..
T Consensus       131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  206 (235)
T 3lcc_A          131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAVSVEE  206 (235)
T ss_dssp             SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCSCSSCCCCHHHHHHHHGGGTEEEEEEEE
T ss_pred             CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCCCCCccCCHHHHHHHHHHcCCeEEEEEe
Confidence            58999999999 5544  7889999999999999999886543221        123566666654 898876653

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.64  E-value=2.1e-15  Score=118.30  Aligned_cols=103  Identities=16%  Similarity=0.151  Sum_probs=87.9

Q ss_pred             CcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           66 KRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      .+|||+|||+|..+..+++. +.+|+++|. +++++.+++++..++.           ..++.+...|..+.   +...+
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~---~~~~~  110 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANL-----------NDRIQIVQGDVHNI---PIEDN  110 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECBTTBC---SSCTT
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccc-----------cCceEEEEcCHHHC---CCCcc
Confidence            39999999999999999987 668999999 6799999999988765           35789988776543   33467


Q ss_pred             CccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          144 PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       144 ~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +||+|+++.+ ++......+++.+.++|+|||.+++....
T Consensus       111 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  150 (219)
T 3dlc_A          111 YADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF  150 (219)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence            8999999999 77788999999999999999999997543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.64  E-value=1.4e-14  Score=113.06  Aligned_cols=120  Identities=13%  Similarity=0.117  Sum_probs=93.9

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..++.+|||+|||+|..++.+++.+  .+|+++|. +++++.+++|++.++.            .++++...|+.+... 
T Consensus        38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~-  104 (204)
T 3e05_A           38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA------------RNVTLVEAFAPEGLD-  104 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC------------TTEEEEECCTTTTCT-
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC------------CcEEEEeCChhhhhh-
Confidence            3467899999999999999999987  68999999 6799999999998864            468888866543321 


Q ss_pred             cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeE
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNV  201 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v  201 (220)
                        ....||+|+++.+ +   ....+++.+.++|+|||.+++......  ....+.+.++ .+|.+
T Consensus       105 --~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~~--~~~~~~~~l~~~g~~~  162 (204)
T 3e05_A          105 --DLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTLD--TLTKAVEFLEDHGYMV  162 (204)
T ss_dssp             --TSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBHH--HHHHHHHHHHHTTCEE
T ss_pred             --cCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecccc--cHHHHHHHHHHCCCce
Confidence              2367999999888 5   688999999999999999999765543  2355555554 36643

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.64  E-value=4.2e-15  Score=117.03  Aligned_cols=127  Identities=12%  Similarity=0.053  Sum_probs=100.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .++.+|||+|||+|..+..+++.+   .+|+++|. +++++.+++++..++.            .++.+...|+.+.   
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~---  100 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL------------KNVEVLKSEENKI---  100 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEECBTTBC---
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEecccccC---
Confidence            367899999999999999999876   68999999 6699999999988765            3688888766443   


Q ss_pred             cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch----------HHHHHHHHHhc-CCeEEEe
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----------VHEQMLQMWKS-NFNVKLV  204 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~----------~~~~f~~~~~~-~f~v~~v  204 (220)
                      +...++||+|+++.+ ++......+++.+.++|+|||.+++........          ..+.+.+.+++ +|++..+
T Consensus       101 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~  178 (219)
T 3dh0_A          101 PLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDAGIRVGRV  178 (219)
T ss_dssp             SSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSCCGGGSCCHHHHHHHHHHTTCEEEEE
T ss_pred             CCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCCchhcccCHHHHHHHHHHCCCEEEEE
Confidence            234578999999999 777889999999999999999999986543221          13566666654 7887554

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.64  E-value=6.7e-15  Score=121.33  Aligned_cols=107  Identities=13%  Similarity=0.085  Sum_probs=91.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .++.+|||+|||+|..+..+++. +.+|+++|+ +++++.+++++...+.           ..++.+...|+.+   .+.
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~---~~~  146 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----------ADNITVKYGSFLE---IPC  146 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----------TTTEEEEECCTTS---CSS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CcceEEEEcCccc---CCC
Confidence            46789999999999999999986 889999999 6699999999887765           3578998876654   333


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .+++||+|++..+ ++......+++.+.++|+|||.+++.....
T Consensus       147 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          147 EDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            4678999999999 777779999999999999999999987653

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.64  E-value=4.4e-15  Score=114.97  Aligned_cols=128  Identities=15%  Similarity=0.211  Sum_probs=97.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++.+|||+|||+|..+..+++.+.+|+++|. +.+++.+++++..++.            .++.+...|+.+.   +. 
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~---~~-   94 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENL------------DNLHTRVVDLNNL---TF-   94 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEECCGGGC---CC-
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCC------------CCcEEEEcchhhC---CC-
Confidence            35679999999999999999999999999999 6699999999987764            3688888766543   22 


Q ss_pred             CCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEecCch-----------HHHHHHHHHhcCCeEEEeeCC
Q 027659          142 APPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEIRSTS-----------VHEQMLQMWKSNFNVKLVPKA  207 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r~~~-----------~~~~f~~~~~~~f~v~~v~~~  207 (220)
                      .++||+|+++.+ ++..  ....+++.+.++|+|||.+++........           ..+.+.+.++. |++..+.+.
T Consensus        95 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-f~~~~~~~~  173 (199)
T 2xvm_A           95 DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYYEG-WERVKYNED  173 (199)
T ss_dssp             CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCCSCCSCCBCTTHHHHHTTT-SEEEEEECC
T ss_pred             CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCCCCCCCccCHHHHHHHhcC-CeEEEeccc
Confidence            678999999999 5444  78899999999999999988765432110           12344455555 887766543

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.64  E-value=2.8e-15  Score=121.18  Aligned_cols=123  Identities=17%  Similarity=0.178  Sum_probs=96.6

Q ss_pred             ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccC
Q 027659           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (220)
Q Consensus        38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (220)
                      +++.+..+++.+.+..       ...++.+|||+|||+|..+..+++. +.+|+++|+ +++++.+++++..+       
T Consensus        36 ~~~~~~~~~~~~~~~~-------~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------  101 (266)
T 3ujc_A           36 ISSGGLEATKKILSDI-------ELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-------  101 (266)
T ss_dssp             CSTTHHHHHHHHTTTC-------CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC-------
T ss_pred             cccchHHHHHHHHHhc-------CCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC-------
Confidence            4455666666666553       3446789999999999999999986 889999999 56888888765432       


Q ss_pred             CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       116 ~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                             .++++...|+.+.   +...++||+|+++.+ ++.  .....+++.+.++|+|||.+++......
T Consensus       102 -------~~~~~~~~d~~~~---~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  163 (266)
T 3ujc_A          102 -------NKIIFEANDILTK---EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCAT  163 (266)
T ss_dssp             -------TTEEEEECCTTTC---CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred             -------CCeEEEECccccC---CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence                   3788888766543   334679999999999 776  7889999999999999999999876544

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.63  E-value=1.5e-14  Score=118.70  Aligned_cols=106  Identities=15%  Similarity=0.184  Sum_probs=87.8

Q ss_pred             CCCCCcEEEeCCcccHHHHHHH-HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++.+|||||||+|..+..++ ..|.+|+++|+ +++++.+++++...+.           ..++.+...|+.+   . 
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~---~-  126 (287)
T 1kpg_A           62 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-----------LRSKRVLLAGWEQ---F-  126 (287)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-----------CSCEEEEESCGGG---C-
T ss_pred             CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCCeEEEECChhh---C-
Confidence            3467899999999999999999 56889999999 6699999998876654           3578888866643   2 


Q ss_pred             ccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          140 AVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                        +++||+|++..+ ++.  .....+++.+.++|+|||.+++......
T Consensus       127 --~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  172 (287)
T 1kpg_A          127 --DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL  172 (287)
T ss_dssp             --CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred             --CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence              278999999999 554  6789999999999999999999876543

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.63  E-value=7.7e-15  Score=119.39  Aligned_cols=123  Identities=13%  Similarity=0.072  Sum_probs=99.1

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      ++...+.+.+.+..       ...++.+|||+|||+|..+..+++. +.+|+++|. +++++.+++++..++.       
T Consensus        44 ~~~~~~~~~l~~~~-------~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-------  109 (273)
T 3bus_A           44 DATDRLTDEMIALL-------DVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGL-------  109 (273)
T ss_dssp             HHHHHHHHHHHHHS-------CCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHhc-------CCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCC-------
Confidence            34455666666553       3446789999999999999999974 788999999 5699999999988765       


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                          ..++.+...|+.+   .+..+++||+|+++.+ ++......+++.+.++|+|||.+++.....
T Consensus       110 ----~~~~~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  169 (273)
T 3bus_A          110 ----ANRVTFSYADAMD---LPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL  169 (273)
T ss_dssp             ----TTTEEEEECCTTS---CCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             ----CcceEEEECcccc---CCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence                3578888876654   3334578999999999 888889999999999999999999887553

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.63  E-value=3.4e-16  Score=120.18  Aligned_cols=128  Identities=13%  Similarity=0.154  Sum_probs=96.0

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      +....+.+.+.+..      ....++.+|||+|||+|..++.+++.+. +|+++|+ +++++.+++|+..++.       
T Consensus        26 p~~~~~~~~~~~~l------~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------   92 (187)
T 2fhp_A           26 PTTDKVKESIFNMI------GPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-------   92 (187)
T ss_dssp             CCCHHHHHHHHHHH------CSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-------
T ss_pred             cCHHHHHHHHHHHH------HhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-------
Confidence            34555555555443      1234678999999999999999888774 7999999 6799999999998875       


Q ss_pred             CCCCCCceEEEEeeeCCCCC-ccccCCCccEEEEecCCCCCChHHHHHHH--HHhhCCCcEEEEEEEecC
Q 027659          118 GSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVYAEHLLEPLLQTI--FALSGPKTTILLGYEIRS  184 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~-~~~~~~~fD~V~~~d~y~~~~~~~l~~~l--~~~l~~~g~~~i~~~~r~  184 (220)
                          ..++++...|+.+... .+...++||+|+++++|........++.+  .++|+|||.+++......
T Consensus        93 ----~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A           93 ----PEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             ----GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             ----CcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence                3478888876654211 11125689999998876666778888888  677999999999877654

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.63  E-value=1.3e-15  Score=124.07  Aligned_cols=107  Identities=16%  Similarity=0.230  Sum_probs=86.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh----CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+|.+|||||||+|..++.+++.    |++|+++|. ++|++.+++++...+.           ..+|++.+.|..+.  
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~-----------~~~v~~~~~D~~~~--  135 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----------PTPVDVIEGDIRDI--  135 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCTTTC--
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhcc-----------CceEEEeecccccc--
Confidence            36789999999999999999975    568999999 6699999999887654           45789988655443  


Q ss_pred             ccccCCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          138 IKAVAPPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                         +.+.||+|+++.+ ++..  ....+++.+.++|+|||.++++...+..
T Consensus       136 ---~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~  183 (261)
T 4gek_A          136 ---AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFE  183 (261)
T ss_dssp             ---CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCS
T ss_pred             ---cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCC
Confidence               2357999999988 5433  3467899999999999999998876543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.63  E-value=2.2e-14  Score=112.52  Aligned_cols=124  Identities=15%  Similarity=0.155  Sum_probs=94.1

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||||||+|..++.+|+.+.+|+++|. +++++.+++|++.++.           ..++.+...|..+.  . .
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~--~-~  118 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGL-----------SPRMRAVQGTAPAA--L-A  118 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCTTGG--G-T
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCCEEEEeCchhhh--c-c
Confidence            346789999999999999999999889999999 6799999999998876           23788888554331  1 1


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEee
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLVP  205 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v~  205 (220)
                      ....||+|+++...   ..+ +++.+.++|+|||.+++......  ....+.+.+++ ++++..+.
T Consensus       119 ~~~~~D~v~~~~~~---~~~-~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~~~g~~i~~i~  178 (204)
T 3njr_A          119 DLPLPEAVFIGGGG---SQA-LYDRLWEWLAPGTRIVANAVTLE--SETLLTQLHARHGGQLLRID  178 (204)
T ss_dssp             TSCCCSEEEECSCC---CHH-HHHHHHHHSCTTCEEEEEECSHH--HHHHHHHHHHHHCSEEEEEE
T ss_pred             cCCCCCEEEECCcc---cHH-HHHHHHHhcCCCcEEEEEecCcc--cHHHHHHHHHhCCCcEEEEE
Confidence            23579999976543   355 99999999999999998776432  34555555543 67776653

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.63  E-value=8.7e-15  Score=111.56  Aligned_cols=135  Identities=13%  Similarity=0.078  Sum_probs=102.2

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (220)
                      +....+.+++....       ...++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|+..++.        
T Consensus        18 ~~~~~~~~~~~~~~-------~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------   82 (183)
T 2yxd_A           18 ITKEEIRAVSIGKL-------NLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI--------   82 (183)
T ss_dssp             CCCHHHHHHHHHHH-------CCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC--------
T ss_pred             cCHHHHHHHHHHHc-------CCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC--------
Confidence            44555556665543       3346789999999999999999997778999998 6699999999998864        


Q ss_pred             CCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-
Q 027659          119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-  197 (220)
Q Consensus       119 ~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-  197 (220)
                          .++++...|+.+.  .  ..+.||+|+++.+   .....+++.+.++  |||.+++......  ....+.+.+++ 
T Consensus        83 ----~~~~~~~~d~~~~--~--~~~~~D~i~~~~~---~~~~~~l~~~~~~--~gG~l~~~~~~~~--~~~~~~~~l~~~  147 (183)
T 2yxd_A           83 ----KNCQIIKGRAEDV--L--DKLEFNKAFIGGT---KNIEKIIEILDKK--KINHIVANTIVLE--NAAKIINEFESR  147 (183)
T ss_dssp             ----CSEEEEESCHHHH--G--GGCCCSEEEECSC---SCHHHHHHHHHHT--TCCEEEEEESCHH--HHHHHHHHHHHT
T ss_pred             ----CcEEEEECCcccc--c--cCCCCcEEEECCc---ccHHHHHHHHhhC--CCCEEEEEecccc--cHHHHHHHHHHc
Confidence                4688888776541  2  2368999999988   6688899999888  9999998775432  24556666644 


Q ss_pred             CCeEEEe
Q 027659          198 NFNVKLV  204 (220)
Q Consensus       198 ~f~v~~v  204 (220)
                      +|.++.+
T Consensus       148 g~~~~~~  154 (183)
T 2yxd_A          148 GYNVDAV  154 (183)
T ss_dssp             TCEEEEE
T ss_pred             CCeEEEE
Confidence            6777655

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.62  E-value=4e-15  Score=119.85  Aligned_cols=102  Identities=15%  Similarity=0.195  Sum_probs=85.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++.+|||||||+|..+..+++.+. +|+++|. +++++.++++..               ..++.+...|..+   .+
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~---~~  103 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---------------SPVVCYEQKAIED---IA  103 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---------------CTTEEEEECCGGG---CC
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---------------cCCeEEEEcchhh---CC
Confidence            34788999999999999999999988 8999999 669998887754               1367888866643   33


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ...++||+|+++.+ ++......+++.+.++|+|||.++++..
T Consensus       104 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  146 (253)
T 3g5l_A          104 IEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVE  146 (253)
T ss_dssp             CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence            34679999999999 7778899999999999999999999743

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.62  E-value=2.1e-14  Score=120.80  Aligned_cols=129  Identities=17%  Similarity=0.108  Sum_probs=92.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-cccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~~~  141 (220)
                      ++.+|||||||+|..++.+++.|++|+++|+ +.+++.+++|++.|++.          ..++++...|+.+... ....
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~----------~~~v~~i~~D~~~~l~~~~~~  222 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLE----------QAPIRWICEDAMKFIQREERR  222 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCT----------TSCEEEECSCHHHHHHHHHHH
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC----------ccceEEEECcHHHHHHHHHhc
Confidence            5679999999999999999999999999999 66999999999999761          1148888765543211 0011


Q ss_pred             CCCccEEEEecC-CCCC----------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-----cCCeEE
Q 027659          142 APPFDYIIGTDV-YAEH----------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-----SNFNVK  202 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~----------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-----~~f~v~  202 (220)
                      .++||+|+++++ |...          .+..+++.+.++|+|||.+++............|.+.++     .+++++
T Consensus       223 ~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~~~~~~~~~~~~~l~~a~~~~g~~v~  299 (332)
T 2igt_A          223 GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYSIRASFYSMHELMRETMRGAGGVVA  299 (332)
T ss_dssp             TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECCTTSCHHHHHHHHHHHTTTSCSEEE
T ss_pred             CCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECCCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence            468999999988 5432          256788888999999999887765544322334443333     356654

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.62  E-value=6.9e-15  Score=114.56  Aligned_cols=123  Identities=11%  Similarity=0.089  Sum_probs=96.1

Q ss_pred             CCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      +.+|||+|||+|..+..++..|.+|+++|. +++++.++++.                 .++.+...|+.+   .+...+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~---~~~~~~  101 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH-----------------PSVTFHHGTITD---LSDSPK  101 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC-----------------TTSEEECCCGGG---GGGSCC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-----------------CCCeEEeCcccc---cccCCC
Confidence            679999999999999999999999999999 66898888761                 257788766543   333467


Q ss_pred             CccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecCc-------------hHHHHHHHHHh-cCCeEEEeeC
Q 027659          144 PFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVKLVPK  206 (220)
Q Consensus       144 ~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-------------~~~~~f~~~~~-~~f~v~~v~~  206 (220)
                      +||+|+++.+ ++.  .....+++.+.++|+|||.+++.......             -..+.+.+.++ .+|++..+..
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~  181 (203)
T 3h2b_A          102 RWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQVTSSHW  181 (203)
T ss_dssp             CEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEECCSSSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred             CeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhhhhchhhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence            9999999999 554  37899999999999999999998754432             11356666665 4898877754


Q ss_pred             C
Q 027659          207 A  207 (220)
Q Consensus       207 ~  207 (220)
                      .
T Consensus       182 ~  182 (203)
T 3h2b_A          182 D  182 (203)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.62  E-value=1.4e-14  Score=114.12  Aligned_cols=107  Identities=18%  Similarity=0.120  Sum_probs=82.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||||||+|..+..+++.+  .+|+++|+ +++++.+++++..++....       ...++++...|+..   .+.
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~---~~~   98 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEM-------QRKRISLFQSSLVY---RDK   98 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHH-------HHTTEEEEECCSSS---CCG
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccc-------cCcceEEEeCcccc---ccc
Confidence            57799999999999999999876  58999999 6699999999887654100       01278888876633   233


Q ss_pred             cCCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ..++||+|+++.+ ++..  ....+++.+.++|+|||.++...
T Consensus        99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  141 (219)
T 3jwg_A           99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTP  141 (219)
T ss_dssp             GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence            3578999999999 5555  34789999999999999655543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.61  E-value=4.5e-16  Score=118.85  Aligned_cols=111  Identities=14%  Similarity=0.239  Sum_probs=87.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++.+|||+|||+|..++.+++.+. +|+++|+ +++++.+++|+..++.           ..++.+...|+.+.  .+
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~--~~   95 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----------ENRFTLLKMEAERA--ID   95 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----------GGGEEEECSCHHHH--HH
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCceEEEECcHHHh--HH
Confidence            34678999999999999999998864 7999999 6699999999998865           24688888666442  12


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHH--HhhCCCcEEEEEEEecCc
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIF--ALSGPKTTILLGYEIRST  185 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~--~~l~~~g~~~i~~~~r~~  185 (220)
                      ...+.||+|+++++|.......+++.+.  ++|+|||.+++....+..
T Consensus        96 ~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~~  143 (177)
T 2esr_A           96 CLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDKTVL  143 (177)
T ss_dssp             HBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEETTCC
T ss_pred             hhcCCCCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECCccc
Confidence            2346799999987765455677888887  889999999998876543

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.61  E-value=8.9e-15  Score=113.84  Aligned_cols=124  Identities=19%  Similarity=0.180  Sum_probs=96.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+ +|||+|||+|..+..+++.|.+|+++|. +++++.++++...++.             ++.+...|..+.   +...
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~---~~~~   92 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV-------------KITTVQSNLADF---DIVA   92 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC-------------CEEEECCBTTTB---SCCT
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEEcChhhc---CCCc
Confidence            45 9999999999999999999999999999 5699999999887643             677877665443   2335


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch--------------HHHHHHHHHhcCCeEEEee
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS--------------VHEQMLQMWKSNFNVKLVP  205 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~--------------~~~~f~~~~~~~f~v~~v~  205 (220)
                      +.||+|+++.+ +.......+++.+.++|+|||.+++........              ..+.+.+.++ +|++..+.
T Consensus        93 ~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-Gf~v~~~~  169 (202)
T 2kw5_A           93 DAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQSELP-SLNWLIAN  169 (202)
T ss_dssp             TTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGGGCCCHHHHHHHCS-SSCEEEEE
T ss_pred             CCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcceeecCHHHHHHHhc-CceEEEEE
Confidence            78999999766 545668899999999999999999987543221              1355566666 89886654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.61  E-value=8.9e-15  Score=120.09  Aligned_cols=123  Identities=16%  Similarity=0.197  Sum_probs=95.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +|.+|||+|||+|..++.+|+.|++ |+++|. +++++.+++|++.|+.           ..++++...|..+...    
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~-----------~~~v~~~~~D~~~~~~----  189 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFPG----  189 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCCC----
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEECCHHHhcc----
Confidence            4789999999999999999999885 999999 6799999999999986           3458888866654432    


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecC----chHHHHHHHHHh-cCCeEEEe
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS----TSVHEQMLQMWK-SNFNVKLV  204 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~----~~~~~~f~~~~~-~~f~v~~v  204 (220)
                      ..+||+|++++++.   ...++..+.++|+|||.+++......    ....+.+.+.++ .+++++.+
T Consensus       190 ~~~fD~Vi~~~p~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~~~~~~  254 (278)
T 2frn_A          190 ENIADRILMGYVVR---THEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKL  254 (278)
T ss_dssp             CSCEEEEEECCCSS---GGGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred             cCCccEEEECCchh---HHHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCCeeEEe
Confidence            57899999977632   35677888899999999998776642    223455555554 47877663

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.61  E-value=2.3e-15  Score=121.74  Aligned_cols=127  Identities=13%  Similarity=0.091  Sum_probs=93.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..+.+|||||||+|.+++.+|..  +.+|+++|. +++++.+++|++.++.            .++++...|+.+....+
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l------------~~v~~~~~d~~~~~~~~  146 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL------------KGARALWGRAEVLAREA  146 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEECCHHHHTTST
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC------------CceEEEECcHHHhhccc
Confidence            35789999999999999999976  568999998 6699999999999876            35888886664432111


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEe
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLV  204 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v  204 (220)
                      ...++||+|++..+   ..+..++..+.++|+|||.+++.......+....+.+.++ .+|++..+
T Consensus       147 ~~~~~fD~I~s~a~---~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e~~~~~~~l~~~G~~~~~~  209 (249)
T 3g89_A          147 GHREAYARAVARAV---APLCVLSELLLPFLEVGGAAVAMKGPRVEEELAPLPPALERLGGRLGEV  209 (249)
T ss_dssp             TTTTCEEEEEEESS---CCHHHHHHHHGGGEEEEEEEEEEECSCCHHHHTTHHHHHHHHTEEEEEE
T ss_pred             ccCCCceEEEECCc---CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHHHHHHHHHHHHcCCeEEEE
Confidence            12478999999866   3468899999999999999887554333322334444443 36666544

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.61  E-value=6.5e-15  Score=116.78  Aligned_cols=109  Identities=14%  Similarity=0.170  Sum_probs=86.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..+..++..+.+|+++|+ +++++.+++++..++...       ....++.+...|...   .+...
T Consensus        30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~d~~~---~~~~~   99 (235)
T 3sm3_A           30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQ-------KTGGKAEFKVENASS---LSFHD   99 (235)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCS-------SSSCEEEEEECCTTS---CCSCT
T ss_pred             CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCcc-------ccCcceEEEEecccc---cCCCC
Confidence            6789999999999999999999999999999 669999998877654310       012357777755543   33346


Q ss_pred             CCccEEEEecC-CCCCChH---HHHHHHHHhhCCCcEEEEEEEe
Q 027659          143 PPFDYIIGTDV-YAEHLLE---PLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~---~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ++||+|+++.+ ++.....   .+++.+.++|+|||.+++....
T Consensus       100 ~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (235)
T 3sm3_A          100 SSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFG  143 (235)
T ss_dssp             TCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             CceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence            78999999999 7666666   8999999999999999998653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.61  E-value=2.8e-14  Score=112.40  Aligned_cols=107  Identities=16%  Similarity=0.128  Sum_probs=82.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||||||+|..+..+++.+  .+|+++|+ +++++.+++++..++....       ...++.+...|+..   .+.
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~---~~~   98 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRN-------QWERLQLIQGALTY---QDK   98 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHH-------HHTTEEEEECCTTS---CCG
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcc-------cCcceEEEeCCccc---ccc
Confidence            56799999999999999999876  48999999 6699999999876654100       01268888866532   222


Q ss_pred             cCCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ..++||+|+++.+ ++..  ....+++.+.++|+|||.+++..
T Consensus        99 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~  141 (217)
T 3jwh_A           99 RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTP  141 (217)
T ss_dssp             GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred             cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            3478999999999 5544  45899999999999999666553

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.61  E-value=9.5e-16  Score=115.93  Aligned_cols=108  Identities=22%  Similarity=0.202  Sum_probs=86.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Ccccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~~~  141 (220)
                      ++.+|||+|||+|..++.+++.+++|+++|. +++++.+++|+..++.             ++++...|+.+.. .....
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~~~~~~~  107 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL-------------GARVVALPVEVFLPEAKAQ  107 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC-------------CCEEECSCHHHHHHHHHHT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC-------------ceEEEeccHHHHHHhhhcc
Confidence            6789999999999999999999999999999 6799999999988753             5777776654421 11111


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHH--HhhCCCcEEEEEEEecCc
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIF--ALSGPKTTILLGYEIRST  185 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~--~~l~~~g~~~i~~~~r~~  185 (220)
                      .++||+|+++++|+ ...+.+++.+.  ++|+|||.+++....+..
T Consensus       108 ~~~~D~i~~~~~~~-~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~~  152 (171)
T 1ws6_A          108 GERFTVAFMAPPYA-MDLAALFGELLASGLVEAGGLYVLQHPKDLY  152 (171)
T ss_dssp             TCCEEEEEECCCTT-SCTTHHHHHHHHHTCEEEEEEEEEEEETTSC
T ss_pred             CCceEEEEECCCCc-hhHHHHHHHHHhhcccCCCcEEEEEeCCccC
Confidence            34799999998855 66778888888  899999999998876544

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.61  E-value=1.6e-14  Score=109.96  Aligned_cols=122  Identities=11%  Similarity=0.008  Sum_probs=89.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .++.+|||+|||+|..++.+++.  +.+|+++|+ +++++.+++|+..++.           ..++ +...|..+  .++
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~-~~~~d~~~--~~~   89 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV-----------SDRI-AVQQGAPR--AFD   89 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTC-----------TTSE-EEECCTTG--GGG
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCC-----------CCCE-EEecchHh--hhh
Confidence            46779999999999999999987  568999999 6699999999988765           2367 55544322  233


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEe
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV  204 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v  204 (220)
                      ...++||+|+++.+ ++    ..+++.+.++|+|||.+++.......  ...+.+.+++ ++++..+
T Consensus        90 ~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~  150 (178)
T 3hm2_A           90 DVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTVES--EQMLWALRKQFGGTISSF  150 (178)
T ss_dssp             GCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSHHH--HHHHHHHHHHHCCEEEEE
T ss_pred             ccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecccc--HHHHHHHHHHcCCeeEEE
Confidence            33378999999988 55    77899999999999999987754432  3344444433 5666544

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.60  E-value=3.1e-15  Score=120.02  Aligned_cols=126  Identities=12%  Similarity=0.085  Sum_probs=93.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHH--hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+.+|||+|||+|..++.+|.  .+.+|+++|. +++++.+++|++.++.            .++++...|+.+....+.
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~~~~~  137 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------------ENTTFCHDRAETFGQRKD  137 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEESCHHHHTTCTT
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCEEEEeccHHHhccccc
Confidence            578999999999999999995  3668999999 6699999999998875            368888865533211011


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEe
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV  204 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v  204 (220)
                      ..++||+|++..+   .....+++.+.++|+|||.+++....+..+....+.+.++. +|++..+
T Consensus       138 ~~~~fD~V~~~~~---~~~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  199 (240)
T 1xdz_A          138 VRESYDIVTARAV---ARLSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLGGELENI  199 (240)
T ss_dssp             TTTCEEEEEEECC---SCHHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTTEEEEEE
T ss_pred             ccCCccEEEEecc---CCHHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcCCeEeEE
Confidence            2468999998775   45789999999999999999886544443334455555543 7766544

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.60  E-value=3.6e-14  Score=111.73  Aligned_cols=101  Identities=19%  Similarity=0.131  Sum_probs=81.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++.                .++.+...|..+.   +.. 
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----------------~~~~~~~~d~~~~---~~~-  104 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP----------------KEFSITEGDFLSF---EVP-  104 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC----------------TTCCEESCCSSSC---CCC-
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC----------------CceEEEeCChhhc---CCC-
Confidence            6779999999999999999999999999999 568888887644                1567777655443   223 


Q ss_pred             CCccEEEEecC-CCCCChHH--HHHHHHHhhCCCcEEEEEEEecC
Q 027659          143 PPFDYIIGTDV-YAEHLLEP--LLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~--l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ++||+|+++.+ ++......  +++.+.++|+|||.+++..+...
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  149 (220)
T 3hnr_A          105 TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFA  149 (220)
T ss_dssp             SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECBS
T ss_pred             CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence            78999999999 66665555  99999999999999999876543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.60  E-value=1.4e-14  Score=117.28  Aligned_cols=154  Identities=12%  Similarity=0.075  Sum_probs=98.3

Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhh--hhccCCCC-
Q 027659           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS--RISQMNPG-  118 (220)
Q Consensus        43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~--~~~~~~~~-  118 (220)
                      ..+.+|+....       ...++.+|||+|||+|..+..+|+.|.+|+++|+ +.+++.++++......  .+...... 
T Consensus        54 ~~l~~~~~~~~-------~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~  126 (252)
T 2gb4_A           54 QLLKKHLDTFL-------KGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAK  126 (252)
T ss_dssp             HHHHHHHHHHH-------TTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCE
T ss_pred             HHHHHHHHHhc-------cCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhccccccccccccccccc
Confidence            45666665421       1236779999999999999999999999999999 5699988765321000  00000000 


Q ss_pred             --CCCCCceEEEEeeeCCCCCcccc-CCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEE-EEecC-----c-
Q 027659          119 --SDLLGSIQAVELDWGNEDHIKAV-APPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLG-YEIRS-----T-  185 (220)
Q Consensus       119 --~~~~~~v~~~~ldw~~~~~~~~~-~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~-~~~r~-----~-  185 (220)
                        .....++++.+.|..+   ++.. .++||+|++..+ .+  ......+++.+.++|+|||.+++. .....     + 
T Consensus       127 ~~~~~~~~i~~~~~D~~~---l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~~  203 (252)
T 2gb4_A          127 VFKSSSGSISLYCCSIFD---LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGPP  203 (252)
T ss_dssp             EEEETTSSEEEEESCTTT---GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCSS
T ss_pred             ccccCCCceEEEECcccc---CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCCC
Confidence              0012478888865543   3332 278999999877 33  334677999999999999998644 32110     0 


Q ss_pred             --hHHHHHHHHHhcCCeEEEeeC
Q 027659          186 --SVHEQMLQMWKSNFNVKLVPK  206 (220)
Q Consensus       186 --~~~~~f~~~~~~~f~v~~v~~  206 (220)
                        -..+.+.+.+...|++..+..
T Consensus       204 ~~~~~~el~~~l~~~f~v~~~~~  226 (252)
T 2gb4_A          204 FYVPSAELKRLFGTKCSMQCLEE  226 (252)
T ss_dssp             CCCCHHHHHHHHTTTEEEEEEEE
T ss_pred             CCCCHHHHHHHhhCCeEEEEEec
Confidence              113566666766788876643

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.60  E-value=2.2e-15  Score=117.92  Aligned_cols=110  Identities=16%  Similarity=0.127  Sum_probs=85.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ++.+|||+|||+|..++.++..++ +|+++|. +++++.+++|++.++..          ..++++...|..+.... ..
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~----------~~~v~~~~~d~~~~~~~-~~  121 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----------SEQAEVINQSSLDFLKQ-PQ  121 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----------TTTEEEECSCHHHHTTS-CC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCC----------ccceEEEECCHHHHHHh-hc
Confidence            567999999999999999887775 7999999 67999999999988640          14788887665332110 02


Q ss_pred             CCC-ccEEEEecCCCCCChHHHHHHH--HHhhCCCcEEEEEEEecC
Q 027659          142 APP-FDYIIGTDVYAEHLLEPLLQTI--FALSGPKTTILLGYEIRS  184 (220)
Q Consensus       142 ~~~-fD~V~~~d~y~~~~~~~l~~~l--~~~l~~~g~~~i~~~~r~  184 (220)
                      .++ ||+|+++++|.......+++.+  .++|+|||.+++....+.
T Consensus       122 ~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          122 NQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             SSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             cCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            457 9999998777667788888888  457999999999887655

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.60  E-value=1.6e-14  Score=117.48  Aligned_cols=105  Identities=15%  Similarity=0.099  Sum_probs=80.4

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC--c
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH--I  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~--~  138 (220)
                      ..++.+|||||||+|..++.+++.|++|+++|. ++|++.+++|+..+                  +...+|.+...  .
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~------------------~v~~~~~~~~~~~~  104 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADR------------------CVTIDLLDITAEIP  104 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSS------------------CCEEEECCTTSCCC
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc------------------cceeeeeecccccc
Confidence            446789999999999999999999999999999 56999999886543                  12344444322  1


Q ss_pred             cccCCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          139 KAVAPPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      ....++||+|+++.+ ++  .+....+++.+.++| |||.++++.+.-..
T Consensus       105 ~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~~g~~  153 (261)
T 3iv6_A          105 KELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVKLGFY  153 (261)
T ss_dssp             GGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEEBSCC
T ss_pred             cccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEeccCcc
Confidence            123578999999988 43  345677899999999 99999999876433

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.59  E-value=2.8e-15  Score=117.38  Aligned_cols=107  Identities=14%  Similarity=0.147  Sum_probs=86.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ++.+|||||||+|..++.++..++ +|+++|+ +++++.+++|++.++.            .++++...|+.+.  .+..
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~------------~~v~~~~~D~~~~--~~~~  119 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------------GNARVVNSNAMSF--LAQK  119 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCHHHH--HSSC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEECCHHHH--Hhhc
Confidence            578999999999999999888775 7999999 6799999999998864            4788888665432  1223


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHHH--hhCCCcEEEEEEEecC
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIFA--LSGPKTTILLGYEIRS  184 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~--~l~~~g~~~i~~~~r~  184 (220)
                      .++||+|+++++|+......+++.+.+  +|+|||.+++......
T Consensus       120 ~~~fD~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~~~~  164 (202)
T 2fpo_A          120 GTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVEN  164 (202)
T ss_dssp             CCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGGG
T ss_pred             CCCCCEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEECCCc
Confidence            568999999877777778888888876  4999999999887644

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.59  E-value=1.7e-14  Score=115.10  Aligned_cols=101  Identities=14%  Similarity=0.092  Sum_probs=85.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||||||+|..+..+++.|++|+++|+ +++++.++++..               ..++.+...|..+.   +...
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~---~~~~  114 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGE---------------GPDLSFIKGDLSSL---PFEN  114 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTC---------------BTTEEEEECBTTBC---SSCT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcc---------------cCCceEEEcchhcC---CCCC
Confidence            6779999999999999999999999999999 568888877631               34788888766543   3346


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ++||+|+++.+ ++......+++.+.++|+|||.+++....
T Consensus       115 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  155 (242)
T 3l8d_A          115 EQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG  155 (242)
T ss_dssp             TCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcC
Confidence            79999999999 88888999999999999999999998753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.59  E-value=1.1e-13  Score=108.89  Aligned_cols=128  Identities=18%  Similarity=0.068  Sum_probs=96.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+.+|||||||+|..++.+|+.  +.+|+++|. +++++.+++|+..++.            .++.+...|+.+.... .
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~------------~~v~~~~~d~~~~~~~-~  107 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------------PNIKLLWVDGSDLTDY-F  107 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------------SSEEEEECCSSCGGGT-S
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC------------CCEEEEeCCHHHHHhh-c
Confidence            4678999999999999999987  468999999 6799999999998864            4789988777552210 2


Q ss_pred             cCCCccEEEEecC-CCCC--------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEeeC
Q 027659          141 VAPPFDYIIGTDV-YAEH--------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  206 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~--------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~  206 (220)
                      ..+.||+|+++.+ .+..        ....+++.+.++|+|||.+++.....  ...+...+.++ .+|.+..+..
T Consensus       108 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~  181 (214)
T 1yzh_A          108 EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR--GLFEYSLVSFSQYGMKLNGVWL  181 (214)
T ss_dssp             CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCH--HHHHHHHHHHHHHTCEEEEEES
T ss_pred             CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCH--HHHHHHHHHHHHCCCeeeeccc
Confidence            3568999999977 3322        24689999999999999999875432  22344445554 4888877654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.59  E-value=1.8e-14  Score=110.73  Aligned_cols=125  Identities=19%  Similarity=0.264  Sum_probs=95.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++..                 ++.+...|+.+.   +...
T Consensus        46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~-----------------~~~~~~~d~~~~---~~~~  105 (195)
T 3cgg_A           46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFP-----------------EARWVVGDLSVD---QISE  105 (195)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCTTTS---CCCC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCC-----------------CCcEEEcccccC---CCCC
Confidence            5779999999999999999999999999999 668888887642                 467777665442   2235


Q ss_pred             CCccEEEEe-cC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEeeCCC
Q 027659          143 PPFDYIIGT-DV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKAK  208 (220)
Q Consensus       143 ~~fD~V~~~-d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~~~  208 (220)
                      ++||+|+++ ++ ++.  +....+++.+.++|+|||.+++............+.+.++ .+|++..+....
T Consensus       106 ~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  176 (195)
T 3cgg_A          106 TDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELENAFESW  176 (195)
T ss_dssp             CCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHTEEEEEEESST
T ss_pred             CceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcCCEEeeeeccc
Confidence            789999998 55 333  4467899999999999999999887655333566767665 489988775543

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.59  E-value=4.2e-15  Score=116.87  Aligned_cols=103  Identities=15%  Similarity=0.118  Sum_probs=84.7

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++++..+              .++++...|+.+..    
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~~----  110 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW--------------SHISWAATDILQFS----  110 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC--------------SSEEEEECCTTTCC----
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC--------------CCeEEEEcchhhCC----
Confidence            346779999999999999999999989999999 66999998876542              36888887765543    


Q ss_pred             cCCCccEEEEecC-CCCCCh---HHHHHHHHHhhCCCcEEEEEEEe
Q 027659          141 VAPPFDYIIGTDV-YAEHLL---EPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~---~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ..++||+|+++.+ ++....   ..+++.+.++|+|||.++++.+.
T Consensus       111 ~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  156 (216)
T 3ofk_A          111 TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR  156 (216)
T ss_dssp             CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence            3678999999999 666655   56799999999999999997754

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.59  E-value=6.5e-15  Score=117.59  Aligned_cols=102  Identities=14%  Similarity=0.090  Sum_probs=84.8

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++.+|||||||+|..+..+++.+.+|+++|. +++++.++++...                ++.+...|..+.    ..
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~----------------~v~~~~~d~~~~----~~  100 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD----------------GITYIHSRFEDA----QL  100 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS----------------CEEEEESCGGGC----CC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC----------------CeEEEEccHHHc----Cc
Confidence            36778999999999999999999999999999 5688888776321                567777655443    23


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHH-HhhCCCcEEEEEEEecC
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIF-ALSGPKTTILLGYEIRS  184 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~-~~l~~~g~~~i~~~~r~  184 (220)
                      +++||+|+++.+ ++......+++.+. ++|+|||.+++..+.+.
T Consensus       101 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~  145 (250)
T 2p7i_A          101 PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNAN  145 (250)
T ss_dssp             SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred             CCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence            678999999999 88788899999999 99999999999887643

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.59  E-value=5.4e-15  Score=112.02  Aligned_cols=119  Identities=11%  Similarity=0.104  Sum_probs=94.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++     .            .++.+...|      .+...
T Consensus        17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~------------~~v~~~~~d------~~~~~   73 (170)
T 3i9f_A           17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK-----F------------DSVITLSDP------KEIPD   73 (170)
T ss_dssp             CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH-----C------------TTSEEESSG------GGSCT
T ss_pred             CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh-----C------------CCcEEEeCC------CCCCC
Confidence            6679999999999999999988779999999 6689888877     1            257777755      22346


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch----------HHHHHHHHHhcCCeEEEeeC
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----------VHEQMLQMWKSNFNVKLVPK  206 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~----------~~~~f~~~~~~~f~v~~v~~  206 (220)
                      ++||+|+++.+ ++......+++.+.++|+|||.+++....+...          ..+.+.+.++ +|++..+..
T Consensus        74 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-Gf~~~~~~~  147 (170)
T 3i9f_A           74 NSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPPLSIRMDEKDYMGWFS-NFVVEKRFN  147 (170)
T ss_dssp             TCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSCGGGCCCHHHHHHHTT-TEEEEEEEC
T ss_pred             CceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCchHhhhcCHHHHHHHHh-CcEEEEccC
Confidence            78999999999 887889999999999999999999987654421          1346666677 998876544

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.59  E-value=2.5e-16  Score=123.20  Aligned_cols=141  Identities=16%  Similarity=0.185  Sum_probs=77.7

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (220)
                      +..+.+++.+..      +...++.+|||+|||+|..++.+++.  +.+|+++|+ +++++.+++|+..++.        
T Consensus        14 ~~~~~~~~~~~l------~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------   79 (215)
T 4dzr_A           14 TEVLVEEAIRFL------KRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--------   79 (215)
T ss_dssp             HHHHHHHHHHHH------TTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC------------------------
T ss_pred             HHHHHHHHHHHh------hhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--------
Confidence            556666666543      12246789999999999999999988  458999999 6699999999887753        


Q ss_pred             CCCCCceEEEEeeeCCCCCc-cccCCCccEEEEecC-CCCCCh--------------------------HHHHHHHHHhh
Q 027659          119 SDLLGSIQAVELDWGNEDHI-KAVAPPFDYIIGTDV-YAEHLL--------------------------EPLLQTIFALS  170 (220)
Q Consensus       119 ~~~~~~v~~~~ldw~~~~~~-~~~~~~fD~V~~~d~-y~~~~~--------------------------~~l~~~l~~~l  170 (220)
                           ++++...|+.+.... ....++||+|+++++ +.....                          ..+++.+.++|
T Consensus        80 -----~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L  154 (215)
T 4dzr_A           80 -----VVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVL  154 (215)
T ss_dssp             --------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGB
T ss_pred             -----ceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHh
Confidence                 456666555441100 011378999999988 432221                          66777788899


Q ss_pred             CCCcE-EEEEEEecCchHHHHHHHHHhcCCeE
Q 027659          171 GPKTT-ILLGYEIRSTSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       171 ~~~g~-~~i~~~~r~~~~~~~f~~~~~~~f~v  201 (220)
                      +|||. +++............+++.++.+|..
T Consensus       155 kpgG~l~~~~~~~~~~~~~~~~l~~~~~gf~~  186 (215)
T 4dzr_A          155 ARGRAGVFLEVGHNQADEVARLFAPWRERGFR  186 (215)
T ss_dssp             CSSSEEEEEECTTSCHHHHHHHTGGGGGGTEE
T ss_pred             cCCCeEEEEEECCccHHHHHHHHHHhhcCCce
Confidence            99999 55555433332233333322346644

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.58  E-value=9.2e-15  Score=124.97  Aligned_cols=105  Identities=16%  Similarity=0.218  Sum_probs=88.3

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ...++++|||||||+|.+++.+++.|+ +|+++|.+++++.++++++.|+.           ..++++...|+.+..   
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~---  125 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNL-----------DHIVEVIEGSVEDIS---  125 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTC-----------TTTEEEEESCGGGCC---
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCC-----------CCeEEEEECchhhcC---
Confidence            456889999999999999999999988 79999988999999999999886           456899987665432   


Q ss_pred             ccCCCccEEEEecC-CCC---CChHHHHHHHHHhhCCCcEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAE---HLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~---~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      . +++||+|++..+ |..   .....+++.+.++|+|||.+++..
T Consensus       126 ~-~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~  169 (376)
T 3r0q_C          126 L-PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH  169 (376)
T ss_dssp             C-SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred             c-CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence            2 378999999876 543   568889999999999999987654

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.58  E-value=1.8e-14  Score=112.94  Aligned_cols=121  Identities=17%  Similarity=0.240  Sum_probs=92.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||||||+|..+..+++.+.+|+++|+ +++++.+++++   .               +.+...|...   .+ ..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---~---------------~~~~~~d~~~---~~-~~  100 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL---G---------------RPVRTMLFHQ---LD-AI  100 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---T---------------SCCEECCGGG---CC-CC
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc---C---------------CceEEeeecc---CC-CC
Confidence            5789999999999999999999999999999 66999988876   1               2334433333   22 46


Q ss_pred             CCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEecCch------------HHHHHHHHHhc-C-CeEEEee
Q 027659          143 PPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEIRSTS------------VHEQMLQMWKS-N-FNVKLVP  205 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r~~~------------~~~~f~~~~~~-~-f~v~~v~  205 (220)
                      ++||+|+++.+ ++..  ....+++.+.++|+|||.++++.......            ..+.+.+.+++ + |++..+.
T Consensus       101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~  180 (211)
T 3e23_A          101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSGEGEGRDKLARYYNYPSEEWLRARYAEAGTWASVAVE  180 (211)
T ss_dssp             SCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCEECTTSCEECCCCHHHHHHHHHHHCCCSEEEEE
T ss_pred             CcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCcccccccchhccCCCHHHHHHHHHhCCCcEEEEEE
Confidence            78999999999 6554  67899999999999999999987654321            24566666654 8 9886654


Q ss_pred             C
Q 027659          206 K  206 (220)
Q Consensus       206 ~  206 (220)
                      .
T Consensus       181 ~  181 (211)
T 3e23_A          181 S  181 (211)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.58  E-value=2.1e-14  Score=117.05  Aligned_cols=118  Identities=20%  Similarity=0.174  Sum_probs=95.4

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (220)
                      ...+.+++...       ....++.+|||||||+|..+..+++.  +.+|+++|. +.+++.+++++..++.        
T Consensus        22 ~~~l~~~l~~~-------~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--------   86 (276)
T 3mgg_A           22 AETLEKLLHHD-------TVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI--------   86 (276)
T ss_dssp             -CHHHHHHHTT-------CCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC--------
T ss_pred             HHHHHHHHhhc-------ccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--------
Confidence            44566666544       23447889999999999999999988  568999999 6699999999988764        


Q ss_pred             CCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       119 ~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                          .++.+...|..+   .+...++||+|+++.+ ++......+++.+.++|+|||.+++...
T Consensus        87 ----~~~~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  143 (276)
T 3mgg_A           87 ----KNVKFLQANIFS---LPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEG  143 (276)
T ss_dssp             ----CSEEEEECCGGG---CCSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----CCcEEEEccccc---CCCCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence                468888866654   2334678999999999 8888899999999999999999999764

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.57  E-value=1.8e-14  Score=121.50  Aligned_cols=102  Identities=22%  Similarity=0.253  Sum_probs=84.4

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++++|||||||+|.+++.+++.|+ +|+++|.+++++.++++++.|+.           ..++++...|..+.   +.
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~---~~  127 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL-----------EDTITLIKGKIEEV---HL  127 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTS---CC
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCC-----------CCcEEEEEeeHHHh---cC
Confidence            45788999999999999999999887 79999996699999999998875           45789888665443   33


Q ss_pred             cCCCccEEEEecC-C---CCCChHHHHHHHHHhhCCCcEEE
Q 027659          141 VAPPFDYIIGTDV-Y---AEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y---~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      ..++||+|+++.+ |   +......++..+.++|+|||.++
T Consensus       128 ~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          128 PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            3478999999885 4   34557789999999999999987

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.57  E-value=1.8e-14  Score=113.56  Aligned_cols=126  Identities=14%  Similarity=0.157  Sum_probs=94.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc-c
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-V  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-~  141 (220)
                      .+.+|||+|||+|..+..+++.+.+|+++|+ +.+++.++++   .               ++.+...++.+....+. .
T Consensus        52 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~---------------~~~~~~~~~~~~~~~~~~~  113 (227)
T 3e8s_A           52 QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA---G---------------AGEVHLASYAQLAEAKVPV  113 (227)
T ss_dssp             CCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT---C---------------SSCEEECCHHHHHTTCSCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh---c---------------ccccchhhHHhhccccccc
Confidence            5689999999999999999999999999999 5688888876   1               33455544433211121 2


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-----------------------------hHHHHH
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST-----------------------------SVHEQM  191 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-----------------------------~~~~~f  191 (220)
                      ..+||+|+++.+ + ......+++.+.++|+|||.+++.......                             ...+.+
T Consensus       114 ~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (227)
T 3e8s_A          114 GKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASW  192 (227)
T ss_dssp             CCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHH
T ss_pred             CCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHH
Confidence            456999999999 7 788899999999999999999997642110                             024667


Q ss_pred             HHHHhc-CCeEEEeeCCC
Q 027659          192 LQMWKS-NFNVKLVPKAK  208 (220)
Q Consensus       192 ~~~~~~-~f~v~~v~~~~  208 (220)
                      .+.+++ +|++..+....
T Consensus       193 ~~~l~~aGf~~~~~~~~~  210 (227)
T 3e8s_A          193 LNALDMAGLRLVSLQEPQ  210 (227)
T ss_dssp             HHHHHHTTEEEEEEECCC
T ss_pred             HHHHHHcCCeEEEEecCC
Confidence            777754 89998887643

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.57  E-value=1.1e-14  Score=123.17  Aligned_cols=103  Identities=20%  Similarity=0.211  Sum_probs=86.8

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++++|||||||+|.+++.+++.|+ +|+++|.+++++.++++++.|+.           ..++++...|+.+.   +.
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---~~  129 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL-----------DHVVTIIKGKVEEV---EL  129 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTC---CC
T ss_pred             cCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCC-----------CCcEEEEECcHHHc---cC
Confidence            35788999999999999999999987 79999997799999999999876           45699999776554   23


Q ss_pred             cCCCccEEEEecC-C---CCCChHHHHHHHHHhhCCCcEEEE
Q 027659          141 VAPPFDYIIGTDV-Y---AEHLLEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y---~~~~~~~l~~~l~~~l~~~g~~~i  178 (220)
                      +.++||+|+++.+ |   +....+.+++.+.++|+|||.++.
T Consensus       130 ~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          130 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            3579999999876 3   346789999999999999999863

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.57  E-value=2.4e-14  Score=122.70  Aligned_cols=138  Identities=14%  Similarity=0.065  Sum_probs=97.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCC-ceEEEEeeeCCCC-Ccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLG-SIQAVELDWGNED-HIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~-~v~~~~ldw~~~~-~~~  139 (220)
                      ++++|||+|||+|..++.+|+.|+ +|+++|. +++++.+++|++.|+.           .. ++++...|..+.. ...
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~-----------~~~~v~~~~~D~~~~l~~~~  280 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHL-----------DMANHQLVVMDVFDYFKYAR  280 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTC-----------CCTTEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CccceEEEECCHHHHHHHHH
Confidence            678999999999999999999887 6999999 6799999999999986           23 7888886654321 111


Q ss_pred             ccCCCccEEEEecC-CCC-----C----ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh----c-CCeEEEe
Q 027659          140 AVAPPFDYIIGTDV-YAE-----H----LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK----S-NFNVKLV  204 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~-----~----~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~----~-~f~v~~v  204 (220)
                      ....+||+|++.++ +..     .    .+..+++.+.++|+|||.++++....... .+.|.+.++    . +.+  .+
T Consensus       281 ~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~~~-~~~~~~~i~~~~~~~g~~--~~  357 (385)
T 2b78_A          281 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VSQFKKQIEKGFGKQKHT--YL  357 (385)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHHHHHHHHHHTTCCCE--EE
T ss_pred             HhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCC-HHHHHHHHHHHHHHcCCc--EE
Confidence            12458999999888 531     1    13446677788999999999988766643 234444332    2 334  45


Q ss_pred             eCCCCCcccCC
Q 027659          205 PKAKESTMWGN  215 (220)
Q Consensus       205 ~~~~~~~~~~~  215 (220)
                      ......++|..
T Consensus       358 ~~~~~~~D~p~  368 (385)
T 2b78_A          358 DLQQLPSDFAV  368 (385)
T ss_dssp             EEECCCTTSCC
T ss_pred             EeCCCCCCCCC
Confidence            55555555553

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.57  E-value=4.1e-14  Score=117.84  Aligned_cols=107  Identities=14%  Similarity=0.149  Sum_probs=88.9

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++.+|||+|||+|..+..+++. |++|+++|+ +++++.+++++..++.           ..++.+...|+.+.    
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~----  152 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT-----------NRSRQVLLQGWEDF----  152 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC-----------SSCEEEEESCGGGC----
T ss_pred             CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECChHHC----
Confidence            346789999999999999999976 899999999 6699999999887654           34688888665432    


Q ss_pred             ccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          140 AVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                        +++||+|+++.+ ++.  .....+++.+.++|+|||.+++.......
T Consensus       153 --~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  199 (318)
T 2fk8_A          153 --AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH  199 (318)
T ss_dssp             --CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred             --CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence              368999999999 554  67899999999999999999998876543

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.57  E-value=1.3e-14  Score=119.06  Aligned_cols=101  Identities=19%  Similarity=0.286  Sum_probs=85.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..++.+++.|.+|+++|. +.+++.+++++..++.             ++++...|..+..   . .
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~~---~-~  182 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL-------------NISTALYDINAAN---I-Q  182 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CEEEEECCGGGCC---C-C
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC-------------ceEEEEecccccc---c-c
Confidence            6789999999999999999999999999999 6699999999988753             6788886665432   1 6


Q ss_pred             CCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          143 PPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       143 ~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ++||+|+++.+ ++  ......+++.+.++|+|||.+++...
T Consensus       183 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          183 ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             SCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            78999999999 53  35577999999999999999887664

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.57  E-value=2.5e-14  Score=122.50  Aligned_cols=118  Identities=17%  Similarity=0.169  Sum_probs=91.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++.+|||||||+|..++.+++.   +.+|+++|+ +++++.+++|++.+.......    ....++++...|+.+...
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~----~~~~~v~~~~~d~~~l~~  156 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGS----PSRSNVRFLKGFIENLAT  156 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSS----TTCCCEEEEESCTTCGGG
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccc----cCCCceEEEEccHHHhhh
Confidence            447889999999999999999875   458999999 669999999988763210000    002578999877765422


Q ss_pred             c---cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          138 I---KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       138 ~---~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .   +...++||+|+++.+ ++......+++.+.++|+|||.+++.....
T Consensus       157 ~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          157 AEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             CBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            1   344679999999999 777789999999999999999999986543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.57  E-value=2.8e-14  Score=130.74  Aligned_cols=140  Identities=19%  Similarity=0.166  Sum_probs=108.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +|++|||||||+|..++.+|..|+. |+++|+ +.+++.+++|++.|+..          ..++++...|..+.  ++..
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~----------~~~v~~i~~D~~~~--l~~~  606 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLT----------GRAHRLIQADCLAW--LREA  606 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC----------STTEEEEESCHHHH--HHHC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC----------ccceEEEecCHHHH--HHhc
Confidence            6889999999999999999998885 999999 56999999999999861          14788888665432  2223


Q ss_pred             CCCccEEEEecC-CCC-----------CChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEeeCCCC
Q 027659          142 APPFDYIIGTDV-YAE-----------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKAKE  209 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~-----------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~~~~~  209 (220)
                      .++||+|++.++ |..           ..+..++..+.++|+|||.++++...+........++  +.+++++.+.....
T Consensus       607 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~~~~~~~~~l~--~~g~~~~~i~~~~l  684 (703)
T 3v97_A          607 NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLA--KLGLKAQEITQKTL  684 (703)
T ss_dssp             CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECCTTCCCCHHHHH--HTTEEEEECTTTTC
T ss_pred             CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccCHHHHH--HcCCceeeeeeccC
Confidence            578999999988 542           1356778888999999999999888765543333222  34788889999999


Q ss_pred             CcccCCCC
Q 027659          210 STMWGNPL  217 (220)
Q Consensus       210 ~~~~~~~~  217 (220)
                      +++|....
T Consensus       685 p~df~~~~  692 (703)
T 3v97_A          685 SQDFARNR  692 (703)
T ss_dssp             CGGGTTCS
T ss_pred             CCCCCCCC
Confidence            99997644

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.56  E-value=3.6e-14  Score=112.07  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=85.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+.+|||||||+|..+..+++.+.+|+++|. +++++.++++...++             .++++...|..+.   +...
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~---~~~~  101 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE-------------SNVEFIVGDARKL---SFED  101 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCCEEEECCTTSC---CSCT
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEECchhcC---CCCC
Confidence            3779999999999999999999989999999 679999999987764             3678888766543   2235


Q ss_pred             CCccEEEEecC--CC-CCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          143 PPFDYIIGTDV--YA-EHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       143 ~~fD~V~~~d~--y~-~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ++||+|+++++  ++ ......+++.+.++|+|||.+++..+.
T Consensus       102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            68999999998  33 345678999999999999999998764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.56  E-value=2.4e-14  Score=109.85  Aligned_cols=137  Identities=15%  Similarity=0.140  Sum_probs=100.2

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      ...+..++....       ...++.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|+..++.          
T Consensus        18 ~~~~~~~~~~~~-------~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~----------   80 (192)
T 1l3i_A           18 AMEVRCLIMCLA-------EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL----------   80 (192)
T ss_dssp             CHHHHHHHHHHH-------CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC----------
T ss_pred             hHHHHHHHHHhc-------CCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCC----------
Confidence            444555555442       3446789999999999999999988888999999 6699999999988764          


Q ss_pred             CCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CC
Q 027659          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NF  199 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f  199 (220)
                       ..++.+...|+.+.  .+. .+.||+|+++.++  .....+++.+.++|+|||.+++......  ....+.+.+++ +|
T Consensus        81 -~~~~~~~~~d~~~~--~~~-~~~~D~v~~~~~~--~~~~~~l~~~~~~l~~gG~l~~~~~~~~--~~~~~~~~l~~~g~  152 (192)
T 1l3i_A           81 -GDNVTLMEGDAPEA--LCK-IPDIDIAVVGGSG--GELQEILRIIKDKLKPGGRIIVTAILLE--TKFEAMECLRDLGF  152 (192)
T ss_dssp             -CTTEEEEESCHHHH--HTT-SCCEEEEEESCCT--TCHHHHHHHHHHTEEEEEEEEEEECBHH--HHHHHHHHHHHTTC
T ss_pred             -CcceEEEecCHHHh--ccc-CCCCCEEEECCch--HHHHHHHHHHHHhcCCCcEEEEEecCcc--hHHHHHHHHHHCCC
Confidence             35788888665431  111 2489999998772  2468999999999999999998776533  23455565543 56


Q ss_pred             eEEE
Q 027659          200 NVKL  203 (220)
Q Consensus       200 ~v~~  203 (220)
                      .++.
T Consensus       153 ~~~~  156 (192)
T 1l3i_A          153 DVNI  156 (192)
T ss_dssp             CCEE
T ss_pred             ceEE
Confidence            5543

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.56  E-value=2.4e-14  Score=117.14  Aligned_cols=134  Identities=16%  Similarity=0.297  Sum_probs=98.8

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (220)
                      +.+..+.+++.+..       . .++.+|||+|||+|..++.+++.  +.+|+++|+ +++++.+++|+..++.      
T Consensus        93 ~~te~l~~~~l~~~-------~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~------  158 (276)
T 2b3t_A           93 PDTECLVEQALARL-------P-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI------  158 (276)
T ss_dssp             TTHHHHHHHHHHHS-------C-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC------
T ss_pred             chHHHHHHHHHHhc-------c-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------
Confidence            44667777776653       1 35679999999999999999965  568999999 6699999999998875      


Q ss_pred             CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCC--------------------------CChHHHHHHHHHhh
Q 027659          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAE--------------------------HLLEPLLQTIFALS  170 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~--------------------------~~~~~l~~~l~~~l  170 (220)
                            .++.+...|+.+.  .  ..++||+|+++++|..                          ..+..+++.+.++|
T Consensus       159 ------~~v~~~~~d~~~~--~--~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~L  228 (276)
T 2b3t_A          159 ------KNIHILQSDWFSA--L--AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL  228 (276)
T ss_dssp             ------CSEEEECCSTTGG--G--TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGE
T ss_pred             ------CceEEEEcchhhh--c--ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhc
Confidence                  3688888777543  1  2568999999977432                          13467888888999


Q ss_pred             CCCcEEEEEEEecCchHHHHHHHHHh-cCCe
Q 027659          171 GPKTTILLGYEIRSTSVHEQMLQMWK-SNFN  200 (220)
Q Consensus       171 ~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~  200 (220)
                      +|||.+++........   .+.+.++ .+|+
T Consensus       229 kpgG~l~~~~~~~~~~---~~~~~l~~~Gf~  256 (276)
T 2b3t_A          229 VSGGFLLLEHGWQQGE---AVRQAFILAGYH  256 (276)
T ss_dssp             EEEEEEEEECCSSCHH---HHHHHHHHTTCT
T ss_pred             CCCCEEEEEECchHHH---HHHHHHHHCCCc
Confidence            9999999876544433   3334443 3664

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.56  E-value=2e-14  Score=115.13  Aligned_cols=129  Identities=12%  Similarity=0.006  Sum_probs=96.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ++.+|||||||+|..+..+++.+ .+|+++|+ +++++.+++++..++.            .++.+...|+.+.   +..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~~~~~~~d~~~~---~~~  143 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------------RVRNYFCCGLQDF---TPE  143 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG------------GEEEEEECCGGGC---CCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC------------ceEEEEEcChhhc---CCC
Confidence            57899999999999999988775 47999999 6699999998876532            3677887665443   223


Q ss_pred             CCCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEEEEecCc------------hHHHHHHHHHh-cCCeEEEee
Q 027659          142 APPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~~~~r~~------------~~~~~f~~~~~-~~f~v~~v~  205 (220)
                      .++||+|+++.+ ++...  ...+++.+.++|+|||.+++.......            ...+.+.+.++ .+|++..+.
T Consensus       144 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~  223 (241)
T 2ex4_A          144 PDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE  223 (241)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCcceecccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence            568999999998 55544  568999999999999999997653321            02456666665 489887765


Q ss_pred             CC
Q 027659          206 KA  207 (220)
Q Consensus       206 ~~  207 (220)
                      ..
T Consensus       224 ~~  225 (241)
T 2ex4_A          224 RQ  225 (241)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.55  E-value=9.7e-15  Score=118.62  Aligned_cols=109  Identities=13%  Similarity=0.078  Sum_probs=84.3

Q ss_pred             HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCC
Q 027659           44 VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL  122 (220)
Q Consensus        44 ~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~  122 (220)
                      .|.++|.+..         ..+.+|||||||+|..+..++..+.+|+++|. +.|++.+++                  .
T Consensus        28 ~l~~~l~~~~---------~~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~------------------~   80 (257)
T 4hg2_A           28 ALFRWLGEVA---------PARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALR------------------H   80 (257)
T ss_dssp             HHHHHHHHHS---------SCSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCC------------------C
T ss_pred             HHHHHHHHhc---------CCCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhh------------------c
Confidence            3567777652         13468999999999999999999999999999 457765432                  2


Q ss_pred             CceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       123 ~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .++.+...+.   +.++..+++||+|+++.+ ++. ..+.+++.+.++|+|||.+.+.....
T Consensus        81 ~~v~~~~~~~---e~~~~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~  138 (257)
T 4hg2_A           81 PRVTYAVAPA---EDTGLPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGL  138 (257)
T ss_dssp             TTEEEEECCT---TCCCCCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CCceeehhhh---hhhcccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCC
Confidence            4688888544   444556789999999999 554 58899999999999999987765543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.55  E-value=4e-14  Score=112.92  Aligned_cols=100  Identities=13%  Similarity=0.017  Sum_probs=82.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++...++.             ++.+...|..+.   +. .
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~---~~-~   99 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-------------KPRLACQDISNL---NI-N   99 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEECCCGGGC---CC-S
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC-------------CeEEEecccccC---Cc-c
Confidence            6789999999999999999999999999999 6699999998876542             577777665443   22 3


Q ss_pred             CCccEEEEec-C-CCC---CChHHHHHHHHHhhCCCcEEEEEE
Q 027659          143 PPFDYIIGTD-V-YAE---HLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       143 ~~fD~V~~~d-~-y~~---~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ++||+|+++. + ++.   .....+++.+.++|+|||.+++..
T Consensus       100 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  142 (246)
T 1y8c_A          100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            7899999997 7 544   567889999999999999999853

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.55  E-value=2.6e-14  Score=117.38  Aligned_cols=104  Identities=16%  Similarity=0.119  Sum_probs=87.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++.+|||+|||+|..++.++..   +++|+++|+ +.+++.+++++..+.             .++++...|..+.  
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-------------~~v~~~~~d~~~~--   84 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP-------------YDSEFLEGDATEI--   84 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS-------------SEEEEEESCTTTC--
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEEcchhhc--
Confidence            446789999999999999999986   578999999 669999999887553             3788888766543  


Q ss_pred             ccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          138 IKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       +. +++||+|+++.+ ++......+++.+.++|+|||.+++..+.
T Consensus        85 -~~-~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           85 -EL-NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             -CC-SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -Cc-CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence             22 468999999999 88788999999999999999999988765

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.55  E-value=1.2e-13  Score=109.71  Aligned_cols=105  Identities=12%  Similarity=0.171  Sum_probs=83.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..++.+|||+|||+|..+..+++.  +.+|+++|. +++++.+++++..+              .++.+...|..+.   
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~---  104 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGN--------------LKVKYIEADYSKY---  104 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSC--------------TTEEEEESCTTTC---
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccC--------------CCEEEEeCchhcc---
Confidence            446789999999999999999988  678999999 66999998876432              2688888665443   


Q ss_pred             cccCCCccEEEEecC-CCCCChH--HHHHHHHHhhCCCcEEEEEEEecC
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLE--PLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~--~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      +. .++||+|+++.+ ++.....  .+++.+.++|+|||.++++.....
T Consensus       105 ~~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  152 (234)
T 3dtn_A          105 DF-EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHG  152 (234)
T ss_dssp             CC-CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred             CC-CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence            22 278999999999 5554433  599999999999999999876544

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.55  E-value=5.5e-14  Score=116.12  Aligned_cols=100  Identities=16%  Similarity=0.125  Sum_probs=84.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHH---hCCeEEEecc-hhhHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMAL---LGCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~---~g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++.+|||||||+|..+..+++   .+.+|+++|+ +.+++.+++++..+ +.           ..++++...|+.+..  
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----------~~~v~~~~~d~~~~~--  102 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDT-----------YKNVSFKISSSDDFK--  102 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-C-----------CTTEEEEECCTTCCG--
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCC-----------CCceEEEEcCHHhCC--
Confidence            678999999999999999994   4678999999 66999999998876 22           358899997776543  


Q ss_pred             cccC------CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEE
Q 027659          139 KAVA------PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       139 ~~~~------~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i  178 (220)
                       ...      ++||+|+++.+ ++. ....+++.+.++|+|||.+++
T Consensus       103 -~~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          103 -FLGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             -GGCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEE
T ss_pred             -ccccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEE
Confidence             223      68999999999 666 899999999999999999987

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.55  E-value=5e-14  Score=107.27  Aligned_cols=130  Identities=15%  Similarity=0.167  Sum_probs=91.3

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (220)
                      +.+..|.+++...         ..++.+|||+|||+|..++.+++.+ +|+++|+ +++++.         .        
T Consensus         8 ~~~~~l~~~l~~~---------~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~---------~--------   60 (170)
T 3q87_B            8 EDTYTLMDALERE---------GLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES---------H--------   60 (170)
T ss_dssp             HHHHHHHHHHHHH---------TCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT---------C--------
T ss_pred             ccHHHHHHHHHhh---------cCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc---------c--------
Confidence            4566777776531         1356799999999999999999999 9999999 557776         1        


Q ss_pred             CCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCC-CCC---------hHHHHHHHHHhhCCCcEEEEEEEecCchHH
Q 027659          119 SDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYA-EHL---------LEPLLQTIFALSGPKTTILLGYEIRSTSVH  188 (220)
Q Consensus       119 ~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~-~~~---------~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~  188 (220)
                          .++++...|+.+..    ..++||+|+++++|. ...         ...+++.+.+.+ |||.+++.......  .
T Consensus        61 ----~~~~~~~~d~~~~~----~~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~--~  129 (170)
T 3q87_B           61 ----RGGNLVRADLLCSI----NQESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANR--P  129 (170)
T ss_dssp             ----SSSCEEECSTTTTB----CGGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGC--H
T ss_pred             ----cCCeEEECChhhhc----ccCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCC--H
Confidence                25678886665421    237899999998843 221         245666666666 99999998765443  3


Q ss_pred             HHHHHHHh-cCCeEEEeeCC
Q 027659          189 EQMLQMWK-SNFNVKLVPKA  207 (220)
Q Consensus       189 ~~f~~~~~-~~f~v~~v~~~  207 (220)
                      +.+.+.++ .+|+...+...
T Consensus       130 ~~l~~~l~~~gf~~~~~~~~  149 (170)
T 3q87_B          130 KEVLARLEERGYGTRILKVR  149 (170)
T ss_dssp             HHHHHHHHHTTCEEEEEEEE
T ss_pred             HHHHHHHHHCCCcEEEEEee
Confidence            45556664 47888766543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.55  E-value=4.8e-14  Score=113.75  Aligned_cols=105  Identities=17%  Similarity=0.210  Sum_probs=86.8

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++++ .+.            ..++.+...|+.+   .+..
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~------------~~~~~~~~~d~~~---~~~~  101 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGV------------DRKVQVVQADARA---IPLP  101 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTS------------CTTEEEEESCTTS---CCSC
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hcc------------CCceEEEEccccc---CCCC
Confidence            46789999999999999999998999999999 66999998887 221            3578888876644   3334


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      +++||+|+++.+ ++......+++.+.++|+|||.+++.....
T Consensus       102 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (263)
T 2yqz_A          102 DESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQA  144 (263)
T ss_dssp             TTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEEecCC
Confidence            578999999999 777788999999999999999999885544

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.54  E-value=8.1e-14  Score=111.26  Aligned_cols=152  Identities=16%  Similarity=0.144  Sum_probs=107.6

Q ss_pred             ccccccchHH-HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CC--eEEEecc-hhhHHHHHHHHHHh
Q 027659           34 LGTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC--NVITTDQ-IEVLPLLKRNVEWN  108 (220)
Q Consensus        34 ~g~~~W~~s~-~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~--~v~~~D~-~~~l~~~~~n~~~n  108 (220)
                      ...++|+--. -|+..|......    -...+|.+|||||||+|..+..+|.. |.  +|+++|+ +++++.++++++..
T Consensus        50 ~e~r~w~p~rsklaa~i~~gl~~----l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~  125 (233)
T 4df3_A           50 EEYREWNAYRSKLAAALLKGLIE----LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR  125 (233)
T ss_dssp             EEEEECCTTTCHHHHHHHTTCSC----CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC
T ss_pred             ceeeeECCCchHHHHHHHhchhh----cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh
Confidence            3567887643 456666543211    13457899999999999999999975 54  6999998 67999888775432


Q ss_pred             hhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchH-
Q 027659          109 TSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSV-  187 (220)
Q Consensus       109 ~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~-  187 (220)
                                    .++.....|-..+...+.....+|+|++ ++.+......++..+.+.|||||.++++.+.|..+. 
T Consensus       126 --------------~ni~~V~~d~~~p~~~~~~~~~vDvVf~-d~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~  190 (233)
T 4df3_A          126 --------------RNIFPILGDARFPEKYRHLVEGVDGLYA-DVAQPEQAAIVVRNARFFLRDGGYMLMAIKARSIDVT  190 (233)
T ss_dssp             --------------TTEEEEESCTTCGGGGTTTCCCEEEEEE-CCCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHHHHH
T ss_pred             --------------cCeeEEEEeccCccccccccceEEEEEE-eccCChhHHHHHHHHHHhccCCCEEEEEEecccCCCC
Confidence                          4677777666665555555678999885 553445567889999999999999999987776432 


Q ss_pred             ------HHHHHHHH-hcCCeEEEe
Q 027659          188 ------HEQMLQMW-KSNFNVKLV  204 (220)
Q Consensus       188 ------~~~f~~~~-~~~f~v~~v  204 (220)
                            +..-.+.+ +.+|++.+.
T Consensus       191 ~p~~~~~~~ev~~L~~~GF~l~e~  214 (233)
T 4df3_A          191 TEPSEVYKREIKTLMDGGLEIKDV  214 (233)
T ss_dssp             TCCCHHHHHHHHHHHHTTCCEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCEEEEE
Confidence                  23333444 358987543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.54  E-value=4.4e-13  Score=113.49  Aligned_cols=147  Identities=18%  Similarity=0.123  Sum_probs=103.7

Q ss_pred             EEEeecCeEEEEEeCCCCccccccc------cchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC-
Q 027659           14 INLEVLGHQLQFSQDPNSKHLGTTV------WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-   86 (220)
Q Consensus        14 ~~~~~~~~~~~i~~~~~~~~~g~~~------W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g-   86 (220)
                      +.+.+....+.+.-+.++...-.+-      .+-...++..+....       ....+.+|||+|||+|..++.+|..+ 
T Consensus       154 i~v~i~~d~~~l~~d~sg~~l~~r~yr~~~~a~l~~~la~~l~~~~-------~~~~~~~vLD~gcGsG~~~ie~a~~~~  226 (354)
T 3tma_A          154 VRVDVRGEEAFLGVQLTERPLSRRFPKAALRGSLTPVLAQALLRLA-------DARPGMRVLDPFTGSGTIALEAASTLG  226 (354)
T ss_dssp             EEEEEETTEEEEEEECCSSCGGGCCGGGCSSCSCCHHHHHHHHHHT-------TCCTTCCEEESSCTTSHHHHHHHHHHC
T ss_pred             EEEEEECCEEEEEEEccCCcccccccccCCCCCcCHHHHHHHHHHh-------CCCCCCEEEeCCCCcCHHHHHHHHhhC
Confidence            4555666666665554322221111      122345666665442       33467899999999999999999865 


Q ss_pred             --CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC-----
Q 027659           87 --CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL-----  158 (220)
Q Consensus        87 --~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~-----  158 (220)
                        .+|+++|+ +++++.+++|++.++.           . ++++...|..+.   +.....||+|+++++|....     
T Consensus       227 ~~~~v~g~Di~~~~i~~a~~n~~~~g~-----------~-~i~~~~~D~~~~---~~~~~~~D~Ii~npPyg~r~~~~~~  291 (354)
T 3tma_A          227 PTSPVYAGDLDEKRLGLAREAALASGL-----------S-WIRFLRADARHL---PRFFPEVDRILANPPHGLRLGRKEG  291 (354)
T ss_dssp             TTSCEEEEESCHHHHHHHHHHHHHTTC-----------T-TCEEEECCGGGG---GGTCCCCSEEEECCCSCC----CHH
T ss_pred             CCceEEEEECCHHHHHHHHHHHHHcCC-----------C-ceEEEeCChhhC---ccccCCCCEEEECCCCcCccCCccc
Confidence              68999999 6799999999998876           2 788888666543   33345699999998865332     


Q ss_pred             ----hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          159 ----LEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       159 ----~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                          +..+++.+.++|+|||.+++....
T Consensus       292 ~~~~~~~~~~~~~~~LkpgG~l~i~t~~  319 (354)
T 3tma_A          292 LFHLYWDFLRGALALLPPGGRVALLTLR  319 (354)
T ss_dssp             HHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence                367888999999999999997653

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.54  E-value=2.2e-14  Score=111.22  Aligned_cols=107  Identities=15%  Similarity=0.087  Sum_probs=83.4

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .++.+|||+|||+|..++.+++. +  .+|+++|. +++++.+++|+..++.           ..++++...|..+... 
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~-   88 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNL-----------IDRVTLIKDGHQNMDK-   88 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTC-----------GGGEEEECSCGGGGGG-
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCeEEEECCHHHHhh-
Confidence            36789999999999999999976 3  58999999 6699999999998765           3578888876544321 


Q ss_pred             cccCCCccEEEEecCC-CCC---------ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          139 KAVAPPFDYIIGTDVY-AEH---------LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y-~~~---------~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       ...++||+|+++.+| ...         ....+++.+.++|+|||.+++....
T Consensus        89 -~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~  141 (197)
T 3eey_A           89 -YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY  141 (197)
T ss_dssp             -TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             -hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence             235789999998764 211         2356899999999999999987643

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.53  E-value=1.5e-13  Score=109.85  Aligned_cols=123  Identities=14%  Similarity=0.041  Sum_probs=89.2

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||||||+|..+..+++.|.+|+++|+ +++++.++++                    +.+...|..+.. .+.
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--------------------~~~~~~d~~~~~-~~~   97 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--------------------FNVVKSDAIEYL-KSL   97 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--------------------SEEECSCHHHHH-HTS
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--------------------cceeeccHHHHh-hhc
Confidence            346789999999999999999999999999999 5688877655                    244443322210 022


Q ss_pred             cCCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEecCch----------------HHHHHHHHHh-cCCe
Q 027659          141 VAPPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEIRSTS----------------VHEQMLQMWK-SNFN  200 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r~~~----------------~~~~f~~~~~-~~f~  200 (220)
                      ..++||+|+++.+ ++..  ....+++.+.++|+|||.+++..+.....                ..+.+.+.++ .+|+
T Consensus        98 ~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~  177 (240)
T 3dli_A           98 PDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFR  177 (240)
T ss_dssp             CTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHTTSTTCCSCCCHHHHHHHHHHHTCE
T ss_pred             CCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHhcCccccccCCHHHHHHHHHHCCCe
Confidence            4578999999999 6655  56999999999999999999987754321                1234455554 4888


Q ss_pred             EEEee
Q 027659          201 VKLVP  205 (220)
Q Consensus       201 v~~v~  205 (220)
                      +..+.
T Consensus       178 ~~~~~  182 (240)
T 3dli_A          178 DVKIE  182 (240)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            76554

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.53  E-value=3.7e-14  Score=116.57  Aligned_cols=111  Identities=16%  Similarity=0.165  Sum_probs=85.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+.+|||||||+|..++.++..|++|+++|+ +++++.+++++........        ..++.+...++..........
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~  128 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPA--------FDKWVIEEANWLTLDKDVPAG  128 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH--------HHTCEEEECCGGGHHHHSCCT
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccc--------cceeeEeecChhhCccccccC
Confidence            5679999999999999999999999999999 6699999988754332100        135677776554321000246


Q ss_pred             CCccEEEEe-cC-CCCCC-------hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          143 PPFDYIIGT-DV-YAEHL-------LEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       143 ~~fD~V~~~-d~-y~~~~-------~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ++||+|+++ .+ .+...       ...+++.+.++|+|||.+++..+.
T Consensus       129 ~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  177 (293)
T 3thr_A          129 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  177 (293)
T ss_dssp             TCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            789999998 67 66555       899999999999999999998764

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.53  E-value=2.5e-13  Score=116.58  Aligned_cols=107  Identities=15%  Similarity=0.155  Sum_probs=81.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      +|++|||+|||+|..++.+|+.|++|+++|+ +.+++.+++|++.|+.           .  ..+...|..+.  +....
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~-----------~--~~~~~~D~~~~--l~~~~  278 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGL-----------R--VDIRHGEALPT--LRGLE  278 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----------C--CEEEESCHHHH--HHTCC
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCC-----------C--CcEEEccHHHH--HHHhc
Confidence            4889999999999999999999999999999 5699999999999986           1  23444333221  11113


Q ss_pred             CCccEEEEecC-CCCC---------ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          143 PPFDYIIGTDV-YAEH---------LLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~---------~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      +.||+|+++++ |...         .+..++..+.++|+|||.++++......
T Consensus       279 ~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~  331 (393)
T 4dmg_A          279 GPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL  331 (393)
T ss_dssp             CCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred             CCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence            34999999988 5532         3467888888899999999877665554

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.53  E-value=3.5e-14  Score=112.44  Aligned_cols=128  Identities=17%  Similarity=0.174  Sum_probs=90.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~  138 (220)
                      ++++|||||||+|..++.+|+.   +++|+++|. +++++.+++|++.++.           ..++++...|..+.. ..
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~l~~~  126 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL-----------QDKVTILNGASQDLIPQL  126 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHGGGT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCC-----------CCceEEEECCHHHHHHHH
Confidence            5679999999999999999974   678999999 6799999999998876           346888886653321 11


Q ss_pred             c--ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc--CCeEEEee
Q 027659          139 K--AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS--NFNVKLVP  205 (220)
Q Consensus       139 ~--~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~--~f~v~~v~  205 (220)
                      .  ...++||+|++... .+......++..+ ++|+|||.+++....+..  ...|.+.+++  .|+...++
T Consensus       127 ~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~--~~~~~~~l~~~~~~~~~~~~  195 (221)
T 3u81_A          127 KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPG--TPDFLAYVRGSSSFECTHYS  195 (221)
T ss_dssp             TTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCC--CHHHHHHHHHCTTEEEEEEE
T ss_pred             HHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcc--hHHHHHHHhhCCCceEEEcc
Confidence            0  01268999998765 3322233455555 899999999886555433  2456665543  46555544

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.53  E-value=1.5e-13  Score=110.05  Aligned_cols=108  Identities=16%  Similarity=-0.036  Sum_probs=84.6

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||||||+|..+..+++.+.+|+++|+ +.+++.++++..               ..++++...|..+......
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~---------------~~~~~~~~~d~~~~~~~~~  118 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT---------------AANISYRLLDGLVPEQAAQ  118 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC---------------CTTEEEEECCTTCHHHHHH
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc---------------ccCceEEECcccccccccc
Confidence            346789999999999999999999999999999 569999988752               2368888866654321110


Q ss_pred             --cCCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          141 --VAPPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       141 --~~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                        ....||+|+++.+ ++..  ....+++.+.++|+|||.+++......
T Consensus       119 ~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  167 (245)
T 3ggd_A          119 IHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTG  167 (245)
T ss_dssp             HHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTT
T ss_pred             cccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence              1135999999999 6666  788999999999999999888876543

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.53  E-value=8.8e-15  Score=120.86  Aligned_cols=121  Identities=16%  Similarity=0.277  Sum_probs=85.2

Q ss_pred             CCCCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccC---------------------
Q 027659           60 PSKLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQM---------------------  115 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---------------------  115 (220)
                      +..+++++|||||||+|..++.++..  +.+|+++|+ +.+++.+++++..+.......                     
T Consensus        42 ~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (292)
T 3g07_A           42 PEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVR  121 (292)
T ss_dssp             GGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-------------------------------
T ss_pred             hhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccc
Confidence            34457899999999999999999987  568999999 569999999877654210000                     


Q ss_pred             ------------------------C-CCCCCCCceEEEEeeeCCCCC--ccccCCCccEEEEecC-CC------CCChHH
Q 027659          116 ------------------------N-PGSDLLGSIQAVELDWGNEDH--IKAVAPPFDYIIGTDV-YA------EHLLEP  161 (220)
Q Consensus       116 ------------------------~-~~~~~~~~v~~~~ldw~~~~~--~~~~~~~fD~V~~~d~-y~------~~~~~~  161 (220)
                                              . ....-..+|++...|+.....  .+...+.||+|++..+ .+      ......
T Consensus       122 ~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~  201 (292)
T 3g07_A          122 KRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKR  201 (292)
T ss_dssp             --------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence                                    0 000012589999988865431  1124678999999998 33      236788


Q ss_pred             HHHHHHHhhCCCcEEEEEE
Q 027659          162 LLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       162 l~~~l~~~l~~~g~~~i~~  180 (220)
                      +++.+.++|+|||.+++..
T Consensus       202 ~l~~~~~~LkpGG~lil~~  220 (292)
T 3g07_A          202 MFRRIYRHLRPGGILVLEP  220 (292)
T ss_dssp             HHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCcEEEEec
Confidence            9999999999999999864

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.53  E-value=4.2e-14  Score=116.85  Aligned_cols=107  Identities=18%  Similarity=0.184  Sum_probs=84.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+.+|||||||+|..+..+++.|.+|+++|+ +++++.+++++..++...         ..++.+...|..+..   . .
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---------~~~v~~~~~d~~~~~---~-~  148 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADV---------RDRCTLVQGDMSAFA---L-D  148 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHH---------HTTEEEEECBTTBCC---C-S
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhccccc---------ccceEEEeCchhcCC---c-C
Confidence            3459999999999999999999999999999 669999999988654210         147899997766532   2 6


Q ss_pred             CCccEEEEe-cC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          143 PPFDYIIGT-DV-YAEH--LLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       143 ~~fD~V~~~-d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ++||+|+++ .+ ++..  ....+++.+.++|+|||.+++.....
T Consensus       149 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          149 KRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             CCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            789999876 44 3333  46889999999999999999976543

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.53  E-value=1.2e-13  Score=118.83  Aligned_cols=139  Identities=17%  Similarity=0.164  Sum_probs=98.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhh-hhccCCCCCCCCCceEEEEeeeCCCCC-cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTS-RISQMNPGSDLLGSIQAVELDWGNEDH-IK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~-~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~  139 (220)
                      ++++|||+|||+|..++.+|+.|+ +|+++|+ +++++.+++|++.|+. .           .++++...|..+... ..
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~-----------~~v~~~~~D~~~~~~~~~  288 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDL-----------SKAEFVRDDVFKLLRTYR  288 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCG-----------GGEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-----------cceEEEECCHHHHHHHHH
Confidence            678999999999999999999875 7999999 6799999999999874 2           268888866543211 11


Q ss_pred             ccCCCccEEEEecC-CCC---------CChHHHHHHHHHhhCCCcEEEEEEEecCchH--HHHHH-HHH-hcCCeEEEee
Q 027659          140 AVAPPFDYIIGTDV-YAE---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSV--HEQML-QMW-KSNFNVKLVP  205 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~---------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~--~~~f~-~~~-~~~f~v~~v~  205 (220)
                      ....+||+|++.++ +..         ..+..++..+.++|+|||.++++........  +...+ +.+ +.++.++.+.
T Consensus       289 ~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~i~  368 (396)
T 3c0k_A          289 DRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIE  368 (396)
T ss_dssp             HTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             hcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            11468999999988 543         4467888889999999999999887665431  12222 233 2355565554


Q ss_pred             CCCCCccc
Q 027659          206 KAKESTMW  213 (220)
Q Consensus       206 ~~~~~~~~  213 (220)
                      .....++|
T Consensus       369 ~~~~~~d~  376 (396)
T 3c0k_A          369 QFRQAADH  376 (396)
T ss_dssp             EEECCTTS
T ss_pred             ECCCCCCC
Confidence            44344443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.53  E-value=2.9e-14  Score=111.29  Aligned_cols=104  Identities=11%  Similarity=0.065  Sum_probs=82.9

Q ss_pred             CCCcEEEeCCcccHHH-HHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAG-FGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~-l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+.+|||+|||+|..+ ..++..+.+|+++|. +++++.+++++..++.             ++.+...|..+   .+..
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~---~~~~   86 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF-------------KLNISKGDIRK---LPFK   86 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTC-------------CCCEEECCTTS---CCSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEECchhh---CCCC
Confidence            5679999999999874 455667889999999 6699999999877642             57777766544   2334


Q ss_pred             CCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          142 APPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .++||+|+++.+ ++.  .....+++.+.++|+|||.+++.....
T Consensus        87 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           87 DESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             TTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             CCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            578999999988 665  567889999999999999999987653

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.53  E-value=6.7e-14  Score=117.50  Aligned_cols=101  Identities=24%  Similarity=0.278  Sum_probs=84.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++++|||+|||+|.+++.+++.|+ +|+++|.+++++.++++++.|+.           ..++++...|..+.   +..
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~-----------~~~i~~~~~d~~~~---~~~  102 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGF-----------SDKITLLRGKLEDV---HLP  102 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTS---CCS
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCC-----------CCCEEEEECchhhc---cCC
Confidence            3678999999999999999999887 79999997799999999998876           45788888665443   223


Q ss_pred             CCCccEEEEecC-C---CCCChHHHHHHHHHhhCCCcEEE
Q 027659          142 APPFDYIIGTDV-Y---AEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       142 ~~~fD~V~~~d~-y---~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      .++||+|++..+ |   +...+..++..+.++|+|||.++
T Consensus       103 ~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             CCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence            478999999876 4   45667889999999999999987

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.52  E-value=2.6e-13  Score=106.96  Aligned_cols=128  Identities=16%  Similarity=0.134  Sum_probs=92.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+.+|||||||+|..++.+|+.  +.+|+++|+ +++++.+++|+..++.            .++.+...|..+... ..
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~------------~nv~~~~~d~~~l~~-~~  104 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------------QNVKLLNIDADTLTD-VF  104 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------------SSEEEECCCGGGHHH-HC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC------------CCEEEEeCCHHHHHh-hc
Confidence            4678999999999999999987  568999999 6699999999988764            478888866654211 02


Q ss_pred             cCCCccEEEEecC--CCCC-------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEeeC
Q 027659          141 VAPPFDYIIGTDV--YAEH-------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPK  206 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~-------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~  206 (220)
                      ..+.||.|+++-+  +...       ....+++.+.++|+|||.+++.....  .......+.+. .+|....+..
T Consensus       105 ~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~--~~~~~~~~~~~~~g~~~~~~~~  178 (213)
T 2fca_A          105 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR--GLFEYSLKSFSEYGLLLTYVSL  178 (213)
T ss_dssp             CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCH--HHHHHHHHHHHHHTCEEEEEES
T ss_pred             CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCH--HHHHHHHHHHHHCCCccccccc
Confidence            3568999988755  3321       14789999999999999999876432  12233344443 3787665543

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.52  E-value=2.8e-13  Score=110.96  Aligned_cols=123  Identities=16%  Similarity=0.198  Sum_probs=90.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +|.+|||+|||+|..++.+|+.|+ +|+++|. +++++.+++|++.|++           ..++.+...|..+..    .
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v-----------~~~v~~~~~D~~~~~----~  189 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFP----G  189 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCC----C
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEeCcHHHhc----c
Confidence            688999999999999999999985 7999998 6799999999999987           567888886654432    2


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc----hHHHHHHHHHh-cCCeEEEee
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~----~~~~~f~~~~~-~~f~v~~v~  205 (220)
                      ...||.|+.+++ +..    .++....++|++||.+.+-......    ...+.+.+..+ .+++++.+.
T Consensus       190 ~~~~D~Vi~~~p~~~~----~~l~~a~~~lk~gG~ih~~~~~~e~~~~~~~~e~i~~~~~~~g~~v~~~~  255 (278)
T 3k6r_A          190 ENIADRILMGYVVRTH----EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN  255 (278)
T ss_dssp             CSCEEEEEECCCSSGG----GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             ccCCCEEEECCCCcHH----HHHHHHHHHcCCCCEEEEEeeecccccchhHHHHHHHHHHHcCCcEEEEE
Confidence            568999999988 543    4556666789999987653332222    12334444443 367665543

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.52  E-value=6.3e-15  Score=119.89  Aligned_cols=144  Identities=15%  Similarity=0.159  Sum_probs=93.2

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhh---------ccCCCCCC--------CC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRI---------SQMNPGSD--------LL  122 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~---------~~~~~~~~--------~~  122 (220)
                      ..+|.+|||||||+|..++.++..|+ +|+++|+ +.|++.++++++.+....         ........        ..
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  132 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence            45788999999999999888888887 4999999 569999998876542100         00000000        00


Q ss_pred             CceE-EEEeeeCCCCCcc-ccCCCccEEEEecC-CC-C---CChHHHHHHHHHhhCCCcEEEEEEEecCc----------
Q 027659          123 GSIQ-AVELDWGNEDHIK-AVAPPFDYIIGTDV-YA-E---HLLEPLLQTIFALSGPKTTILLGYEIRST----------  185 (220)
Q Consensus       123 ~~v~-~~~ldw~~~~~~~-~~~~~fD~V~~~d~-y~-~---~~~~~l~~~l~~~l~~~g~~~i~~~~r~~----------  185 (220)
                      .++. +...|..+..... ...++||+|+++-+ ++ .   +.+..+++.+.++|+|||.++++......          
T Consensus       133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~~g~~~~~  212 (263)
T 2a14_A          133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFS  212 (263)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred             hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCccceeCCeEee
Confidence            1233 6665554432111 12468999999998 43 2   34567888888999999999998642210          


Q ss_pred             ---hHHHHHHHHHh-cCCeEEEee
Q 027659          186 ---SVHEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       186 ---~~~~~f~~~~~-~~f~v~~v~  205 (220)
                         -..+.+.+.++ .+|++..+.
T Consensus       213 ~~~~~~~~l~~~l~~aGF~i~~~~  236 (263)
T 2a14_A          213 CVALEKGEVEQAVLDAGFDIEQLL  236 (263)
T ss_dssp             CCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             ccccCHHHHHHHHHHCCCEEEEEe
Confidence               02345666665 489886654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.52  E-value=1.3e-13  Score=111.81  Aligned_cols=111  Identities=18%  Similarity=0.082  Sum_probs=85.9

Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCC
Q 027659           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL  121 (220)
Q Consensus        43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~  121 (220)
                      ..+.+.+.+..       ...++.+|||||||+|..+..+++.+++|+++|+ +.+++.++.+                 
T Consensus        20 ~~~~~~l~~~~-------~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~-----------------   75 (261)
T 3ege_A           20 IRIVNAIINLL-------NLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVH-----------------   75 (261)
T ss_dssp             HHHHHHHHHHH-------CCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCC-----------------
T ss_pred             HHHHHHHHHHh-------CCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhc-----------------
Confidence            34556665543       2346789999999999999999999999999999 5566655432                 


Q ss_pred             CCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          122 LGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       122 ~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       .++.+...|+.+   .+...++||+|+++.+ ++......+++.+.++|+ ||.+++....
T Consensus        76 -~~~~~~~~d~~~---~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~  132 (261)
T 3ege_A           76 -PQVEWFTGYAEN---LALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFD  132 (261)
T ss_dssp             -TTEEEECCCTTS---CCSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEEC
T ss_pred             -cCCEEEECchhh---CCCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcC
Confidence             257888766644   3334679999999999 777889999999999999 9977776654

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.51  E-value=5.1e-14  Score=111.65  Aligned_cols=127  Identities=12%  Similarity=0.029  Sum_probs=90.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+.+|||||||+|..++.+|+..  ..|+++|. +++++.+++|+..++.            .++.+...|..+......
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l------------~nv~~~~~Da~~~l~~~~  101 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL------------SNLRVMCHDAVEVLHKMI  101 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC------------SSEEEECSCHHHHHHHHS
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC------------CcEEEEECCHHHHHHHHc
Confidence            56799999999999999999874  46999998 6799999999988875            468888855433211012


Q ss_pred             cCCCccEEEEe--cCCCCC-Ch------HHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEe
Q 027659          141 VAPPFDYIIGT--DVYAEH-LL------EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       141 ~~~~fD~V~~~--d~y~~~-~~------~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v  204 (220)
                      .++.||.|+++  ++|... ..      +.+++.+.++|+|||.++++.....  ..+...+.+......+.+
T Consensus       102 ~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~--~~~~~~~~~~~~~~~~~~  172 (218)
T 3dxy_A          102 PDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEP--YAEHMLEVMSSIDGYKNL  172 (218)
T ss_dssp             CTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHH--HHHHHHHHHHTSTTEEEC
T ss_pred             CCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHH--HHHHHHHHHHhCCCcccc
Confidence            46789999998  443322 21      3599999999999999999775432  234445555544333333

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.51  E-value=5.5e-14  Score=112.94  Aligned_cols=127  Identities=11%  Similarity=0.014  Sum_probs=95.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .++.+|||||||+|..+..++..+. +|+++|. +.+++.+++++..+              .++.+...|+.+.   +.
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------~~~~~~~~d~~~~---~~  154 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--------------PVGKFILASMETA---TL  154 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--------------SEEEEEESCGGGC---CC
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--------------CceEEEEccHHHC---CC
Confidence            3678999999999999999998754 6999998 66999998876532              3678888666543   23


Q ss_pred             cCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecCc-------------hHHHHHHHHHh-cCCeEEE
Q 027659          141 VAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRST-------------SVHEQMLQMWK-SNFNVKL  203 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-------------~~~~~f~~~~~-~~f~v~~  203 (220)
                      ..++||+|+++.+ ++.  .....+++.+.++|+|||.+++.......             ...+.+.+.++ .+|++..
T Consensus       155 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~  234 (254)
T 1xtp_A          155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVK  234 (254)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEE
T ss_pred             CCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceecccCCcccCCHHHHHHHHHHCCCEEEE
Confidence            4578999999999 665  45789999999999999999998752110             01255666664 4898876


Q ss_pred             eeC
Q 027659          204 VPK  206 (220)
Q Consensus       204 v~~  206 (220)
                      +..
T Consensus       235 ~~~  237 (254)
T 1xtp_A          235 EAF  237 (254)
T ss_dssp             EEE
T ss_pred             eee
Confidence            643

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.51  E-value=1.5e-13  Score=118.13  Aligned_cols=140  Identities=13%  Similarity=0.099  Sum_probs=99.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-ccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~~  140 (220)
                      ++++|||+|||+|..++.+|+.|+ +|+++|+ +++++.+++|++.|+.           ..++++...|+.+... ...
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~-----------~~~v~~~~~d~~~~~~~~~~  285 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----------EDRMKFIVGSAFEEMEKLQK  285 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHHHH
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CccceEEECCHHHHHHHHHh
Confidence            678999999999999999999876 7999999 6799999999999976           2378888866543211 111


Q ss_pred             cCCCccEEEEecC-CCC---------CChHHHHHHHHHhhCCCcEEEEEEEecCchH--HHHHH-HHHh-cCCeEEEee-
Q 027659          141 VAPPFDYIIGTDV-YAE---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSV--HEQML-QMWK-SNFNVKLVP-  205 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~---------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~--~~~f~-~~~~-~~f~v~~v~-  205 (220)
                      ...+||+|++.++ |..         .....++..+.++|+|||.++++........  +...+ +.+. .+..++.+. 
T Consensus       286 ~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~  365 (396)
T 2as0_A          286 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEP  365 (396)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTTEEEEESSC
T ss_pred             hCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence            2468999999888 553         3356778888889999999888876655432  12222 2332 355666665 


Q ss_pred             CCCCCcccC
Q 027659          206 KAKESTMWG  214 (220)
Q Consensus       206 ~~~~~~~~~  214 (220)
                      .....+++.
T Consensus       366 ~~~~~~d~p  374 (396)
T 2as0_A          366 YRTQAPDHP  374 (396)
T ss_dssp             BBCSCTTSC
T ss_pred             cCCCCCCCC
Confidence            444444443

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.51  E-value=3.4e-13  Score=108.63  Aligned_cols=99  Identities=12%  Similarity=-0.034  Sum_probs=83.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .++.+|||||||+|..+..++..  +.+|+++|. +++++.++++     .            .++.+...|..+.   +
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~------------~~~~~~~~d~~~~---~   91 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----L------------PNTNFGKADLATW---K   91 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----S------------TTSEEEECCTTTC---C
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----C------------CCcEEEECChhhc---C
Confidence            46779999999999999999987  788999999 6699988876     1            2578888665543   2


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       ..++||+|+++.+ ++......+++.+.++|+|||.+++..+.
T Consensus        92 -~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           92 -PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             -CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             -ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence             3678999999999 77788999999999999999999998764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.51  E-value=6.3e-14  Score=111.78  Aligned_cols=101  Identities=18%  Similarity=0.157  Sum_probs=83.2

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .++.+|||||||+|..+..+++.+. +|+++|. +++++.++++...               .++.+...|....   +.
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------~~~~~~~~d~~~~---~~  103 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---------------TGITYERADLDKL---HL  103 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---------------SSEEEEECCGGGC---CC
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---------------CCceEEEcChhhc---cC
Confidence            3678999999999999999999988 8999999 5688888776432               2577777665442   23


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ..++||+|+++.+ ++......+++.+.++|+|||.+++...
T Consensus       104 ~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~  145 (243)
T 3bkw_A          104 PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE  145 (243)
T ss_dssp             CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence            4578999999999 7777899999999999999999998764

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.51  E-value=5.2e-14  Score=115.94  Aligned_cols=120  Identities=16%  Similarity=0.202  Sum_probs=90.7

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      +.+..|.+++.+..       ....+.+|||+|||+|..++.+++. +++|+++|+ +++++.+++|+..++.       
T Consensus       106 ~~te~lv~~~l~~~-------~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l-------  171 (284)
T 1nv8_A          106 PETEELVELALELI-------RKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV-------  171 (284)
T ss_dssp             TTHHHHHHHHHHHH-------HHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC-------
T ss_pred             hhHHHHHHHHHHHh-------cccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-------
Confidence            34566666665542       1124579999999999999999988 778999999 6799999999999876       


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCc---cEEEEecCCCCCC--------------------hHHHHHHHH-HhhCCC
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPF---DYIIGTDVYAEHL--------------------LEPLLQTIF-ALSGPK  173 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~f---D~V~~~d~y~~~~--------------------~~~l~~~l~-~~l~~~  173 (220)
                          ..++++...||.+..     .++|   |+|+++++|....                    -..+++.+. +.++||
T Consensus       172 ----~~~v~~~~~D~~~~~-----~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pg  242 (284)
T 1nv8_A          172 ----SDRFFVRKGEFLEPF-----KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG  242 (284)
T ss_dssp             ----TTSEEEEESSTTGGG-----GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred             ----CCceEEEECcchhhc-----ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCC
Confidence                346999998876531     2468   9999997754211                    116788888 999999


Q ss_pred             cEEEEEEEe
Q 027659          174 TTILLGYEI  182 (220)
Q Consensus       174 g~~~i~~~~  182 (220)
                      |.+++....
T Consensus       243 G~l~~e~~~  251 (284)
T 1nv8_A          243 KIVLMEIGE  251 (284)
T ss_dssp             CEEEEECCT
T ss_pred             CEEEEEECc
Confidence            999986543

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.51  E-value=7.6e-14  Score=112.17  Aligned_cols=103  Identities=20%  Similarity=0.262  Sum_probs=82.4

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++.+|||+|||+|..++.+++.|.+|+++|. +++++.+++++..++.             ++.+...|+.+..    .
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-------------~v~~~~~d~~~~~----~  102 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-------------KIEFLQGDVLEIA----F  102 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEESCGGGCC----C
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC-------------ceEEEECChhhcc----c
Confidence            35679999999999999999999999999999 6799999999877643             6788886665432    2


Q ss_pred             CCCccEEEEecC---C-CCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV---Y-AEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~---y-~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      .++||+|++...   | .......+++.+.++|+|||.+++..+.
T Consensus       103 ~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            468999998532   3 3345788999999999999999886543

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.51  E-value=7.8e-14  Score=114.13  Aligned_cols=103  Identities=16%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .++.+|||+|||+|..++.+|+.+.  +|+++|. +++++.+++|++.|+.            .++.+...|..+. .  
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l------------~~~~~~~~d~~~~-~--  182 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL------------NNVIPILADNRDV-E--  182 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC------------SSEEEEESCGGGC-C--
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCEEEEECChHHc-C--
Confidence            3678999999999999999998854  8999999 6799999999999986            3677888665543 1  


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                       ..++||+|++++++   ....++..+.+.|+|||.++++.....
T Consensus       183 -~~~~~D~Vi~d~p~---~~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          183 -LKDVADRVIMGYVH---KTHKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             -CTTCEEEEEECCCS---SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             -ccCCceEEEECCcc---cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence             15689999988775   456788888899999999998877663

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.50  E-value=1.1e-13  Score=108.46  Aligned_cols=101  Identities=15%  Similarity=0.088  Sum_probs=82.5

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..+.+|||+|||+|..+..+++.+.+|+++|+ +++++.+++    ++            ..++.+...|..+.    ..
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~------------~~~~~~~~~d~~~~----~~  104 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HG------------LDNVEFRQQDLFDW----TP  104 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GC------------CTTEEEEECCTTSC----CC
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cC------------CCCeEEEecccccC----CC
Confidence            35679999999999999999999999999999 568888876    22            14788888766543    24


Q ss_pred             CCCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          142 APPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .++||+|+++.+ ++...  ...+++.+.++|+|||.+++....+
T Consensus       105 ~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          105 DRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            679999999999 65554  4889999999999999999986643

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.50  E-value=1.7e-13  Score=107.18  Aligned_cols=100  Identities=18%  Similarity=0.111  Sum_probs=81.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||+|||+|..+..+++.+.+|+++|. +++++.+++|+..++.            .++++...|+.+..   .
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~---~  139 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDL------------HNVSTRHGDGWQGW---Q  139 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGCC---G
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC------------CceEEEECCcccCC---c
Confidence            346789999999999999999999999999999 6799999999988765            36888887665432   1


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ..++||+|+++.+ .+..      +.+.++|+|||.+++..+.
T Consensus       140 ~~~~~D~i~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          140 ARAPFDAIIVTAAPPEIP------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GGCCEEEEEESSBCSSCC------THHHHTEEEEEEEEEEECS
T ss_pred             cCCCccEEEEccchhhhh------HHHHHhcccCcEEEEEEcC
Confidence            2568999999887 4333      2578899999999998765

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.50  E-value=1e-13  Score=117.30  Aligned_cols=104  Identities=16%  Similarity=0.186  Sum_probs=84.0

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++++|||||||+|.+++.+++.|+ +|+++|.+++++.++++++.|+.           ..++++...|+.+..    
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l-----------~~~v~~~~~d~~~~~----  112 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNL-----------TDRIVVIPGKVEEVS----  112 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC----
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcchhhCC----
Confidence            34788999999999999999999876 79999997788999999998876           457899887665532    


Q ss_pred             cCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .+++||+|++..+ ++.  +.....+..+.++|+|||.+++..
T Consensus       113 ~~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          113 LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             CSSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             CCCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            2368999999988 643  445667777889999999998654

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.50  E-value=1.6e-13  Score=111.10  Aligned_cols=95  Identities=14%  Similarity=0.074  Sum_probs=77.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||||||+|..+..+++.+.+|+++|+ +++++.++++..                 ++.+...|..+..   . .
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~-----------------~~~~~~~d~~~~~---~-~  108 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNP-----------------DAVLHHGDMRDFS---L-G  108 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCTTTCC---C-S
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC-----------------CCEEEECChHHCC---c-c
Confidence            5679999999999999999999999999999 669998887632                 5678886665432   2 6


Q ss_pred             CCccEEEEec-C-CCC---CChHHHHHHHHHhhCCCcEEEEE
Q 027659          143 PPFDYIIGTD-V-YAE---HLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       143 ~~fD~V~~~d-~-y~~---~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ++||+|+++. + .+.   .....+++.+.++|+|||.+++.
T Consensus       109 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          109 RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             CCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            7899999997 7 443   46778899999999999999984

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.50  E-value=1.2e-13  Score=116.54  Aligned_cols=103  Identities=14%  Similarity=0.124  Sum_probs=81.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+.+|||||||+|.+++.+++.+  .+|+++|. +.+++.+++|+..|+.             .+.+...|...   .  
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-------------~~~~~~~d~~~---~--  257 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-------------EGEVFASNVFS---E--  257 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-------------CCEEEECSTTT---T--
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-------------CCEEEEccccc---c--
Confidence            35689999999999999999887  47999999 5699999999998865             34555544332   1  


Q ss_pred             cCCCccEEEEecCCC------CCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          141 VAPPFDYIIGTDVYA------EHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~------~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ..++||+|+++++|+      ......+++.+.++|+|||.+++......
T Consensus       258 ~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  307 (343)
T 2pjd_A          258 VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFL  307 (343)
T ss_dssp             CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETTS
T ss_pred             ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCCC
Confidence            256899999999933      23457889999999999999999876543

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.50  E-value=3e-14  Score=115.09  Aligned_cols=144  Identities=16%  Similarity=0.199  Sum_probs=96.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhh---------hccCCCCCC--------CC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSR---------ISQMNPGSD--------LL  122 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~---------~~~~~~~~~--------~~  122 (220)
                      ..++++|||||||+|..++.++..+. +|+++|+ +.+++.+++++..+...         +........        ..
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  133 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR  133 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred             ccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence            34678999999999999999999888 7999999 56999998887543200         000000000        00


Q ss_pred             Cce-EEEEeeeCCCCCcc-ccCCCccEEEEecC-C----CCCChHHHHHHHHHhhCCCcEEEEEEEecC-----------
Q 027659          123 GSI-QAVELDWGNEDHIK-AVAPPFDYIIGTDV-Y----AEHLLEPLLQTIFALSGPKTTILLGYEIRS-----------  184 (220)
Q Consensus       123 ~~v-~~~~ldw~~~~~~~-~~~~~fD~V~~~d~-y----~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~-----------  184 (220)
                      .++ .+...|..+....+ ...++||+|+++.+ +    +......+++.+.++|+|||.+++......           
T Consensus       134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~  213 (265)
T 2i62_A          134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYYMIGEQKFS  213 (265)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEEE
T ss_pred             hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceEEcCCcccc
Confidence            126 77777665543211 12278999999999 6    444678899999999999999998763210           


Q ss_pred             --chHHHHHHHHHh-cCCeEEEee
Q 027659          185 --TSVHEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       185 --~~~~~~f~~~~~-~~f~v~~v~  205 (220)
                        .-..+.+.+.++ .+|++..+.
T Consensus       214 ~~~~~~~~~~~~l~~aGf~~~~~~  237 (265)
T 2i62_A          214 SLPLGWETVRDAVEEAGYTIEQFE  237 (265)
T ss_dssp             CCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred             ccccCHHHHHHHHHHCCCEEEEEE
Confidence              111345566664 489887654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.50  E-value=3e-13  Score=109.10  Aligned_cols=128  Identities=17%  Similarity=0.144  Sum_probs=93.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++++|||||||+|..++.+|+.   +.+|+++|. +++++.+++|++.++.           ..++++...|..+.....
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~l~~~  131 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGV-----------DQRVTLREGPALQSLESL  131 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHTC
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHhc
Confidence            5789999999999999999986   678999999 6799999999998876           357899886654321111


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc------------hHHHHHHHHHhc--CCeEEEe
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNVKLV  204 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~------------~~~~~f~~~~~~--~f~v~~v  204 (220)
                      ...++||+|++...  ......+++.+.++|+|||.+++.......            ...+.|.+.+..  .|....+
T Consensus       132 ~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  208 (248)
T 3tfw_A          132 GECPAFDLIFIDAD--KPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSADERVQGVRQFIEMMGAEPRLTATAL  208 (248)
T ss_dssp             CSCCCCSEEEECSC--GGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CCCCCeEEEEECCc--hHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCEEEEEe
Confidence            11348999997543  445678899999999999998886554331            124566666644  4655544

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.49  E-value=2.7e-13  Score=106.79  Aligned_cols=106  Identities=16%  Similarity=0.093  Sum_probs=74.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .+|.+|||||||+|..+..+++..  .+|+++|. +++++.+.++++..              .++.+...|........
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--------------~~v~~~~~d~~~~~~~~  121 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--------------NNIIPLLFDASKPWKYS  121 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--------------SSEEEECSCTTCGGGTT
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--------------CCeEEEEcCCCCchhhc
Confidence            367899999999999999999764  58999999 56887776655432              25666654443321111


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ...++||+|+++-... .....+++.+.++|+|||.++++.+.+
T Consensus       122 ~~~~~fD~V~~~~~~~-~~~~~~l~~~~r~LkpgG~l~i~~~~~  164 (210)
T 1nt2_A          122 GIVEKVDLIYQDIAQK-NQIEILKANAEFFLKEKGEVVIMVKAR  164 (210)
T ss_dssp             TTCCCEEEEEECCCST-THHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             ccccceeEEEEeccCh-hHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            1247899999873232 334456899999999999999987543

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.49  E-value=4e-13  Score=109.28  Aligned_cols=109  Identities=13%  Similarity=0.028  Sum_probs=86.8

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hh------hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEee
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IE------VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD  131 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~------~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ld  131 (220)
                      ..++.+|||||||+|..+..+++. |  .+|+++|. ++      +++.+++++..++.           ..++++...|
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d  109 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPL-----------GDRLTVHFNT  109 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTT-----------GGGEEEECSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCC-----------CCceEEEECC
Confidence            346789999999999999999987 4  68999998 44      89999999887654           3478888865


Q ss_pred             -eCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          132 -WGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       132 -w~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       +.. ...+...++||+|+++.+ ++......+++.+..+++|||.+++....
T Consensus       110 ~~~~-~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~  161 (275)
T 3bkx_A          110 NLSD-DLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWS  161 (275)
T ss_dssp             CTTT-CCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEEC
T ss_pred             hhhh-ccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence             222 223334678999999999 77777888888888888899999997654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.49  E-value=3.6e-15  Score=119.40  Aligned_cols=101  Identities=18%  Similarity=0.085  Sum_probs=81.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+.+|||+|||+|..++.+++.|.+|+++|+ +++++.+++|+..++.           ..++.+...|+.+..    ..
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~----~~  142 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGI-----------ADKIEFICGDFLLLA----SF  142 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHG----GG
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC-----------CcCeEEEECChHHhc----cc
Confidence            6789999999999999999999999999999 6699999999998875           247889887665432    35


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ++||+|+++++ .+.......+..+.++|+|||.+++.
T Consensus       143 ~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          143 LKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             CCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             CCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence            68999999988 55554444566677788998875543

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.49  E-value=6.2e-14  Score=109.44  Aligned_cols=117  Identities=17%  Similarity=0.275  Sum_probs=89.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||+|||+|..++.++..  +.+|+++|. +++++.+++|+..++.            .++.+...|+.+..    
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~~----  128 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------------ENIEPVQSRVEEFP----  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------------SSEEEEECCTTTSC----
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEecchhhCC----
Confidence            4779999999999999999976  568999998 6699999999998765            35888887776542    


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEE
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKL  203 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~  203 (220)
                      ..++||+|+++.+   ..+..+++.+.++|+|||.+++.......   +...+..+ +|++..
T Consensus       129 ~~~~~D~i~~~~~---~~~~~~l~~~~~~L~~gG~l~~~~~~~~~---~~~~~~~~-g~~~~~  184 (207)
T 1jsx_A          129 SEPPFDGVISRAF---ASLNDMVSWCHHLPGEQGRFYALKGQMPE---DEIALLPE-EYQVES  184 (207)
T ss_dssp             CCSCEEEEECSCS---SSHHHHHHHHTTSEEEEEEEEEEESSCCH---HHHHTSCT-TEEEEE
T ss_pred             ccCCcCEEEEecc---CCHHHHHHHHHHhcCCCcEEEEEeCCCch---HHHHHHhc-CCceee
Confidence            2468999997654   44778999999999999999987554332   22222223 777654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.49  E-value=7.1e-14  Score=114.80  Aligned_cols=107  Identities=15%  Similarity=0.062  Sum_probs=85.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ++.+|||+|||+|..+..+++.+. +|+++|+ +++++.+++++..++.           ..++.+...|..+...  ..
T Consensus        64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~  130 (298)
T 1ri5_A           64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----------RFKVFFRAQDSYGRHM--DL  130 (298)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----------SSEEEEEESCTTTSCC--CC
T ss_pred             CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CccEEEEECCcccccc--CC
Confidence            677999999999999999988876 8999999 6699999998876643           3468888866654321  03


Q ss_pred             CCCccEEEEecC-CC----CCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          142 APPFDYIIGTDV-YA----EHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~----~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .++||+|+++.+ ++    ......+++.+.++|+|||.+++..+..
T Consensus       131 ~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  177 (298)
T 1ri5_A          131 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR  177 (298)
T ss_dssp             SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             CCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            568999999988 44    3456789999999999999999988654

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.48  E-value=3e-13  Score=106.87  Aligned_cols=129  Identities=16%  Similarity=0.166  Sum_probs=93.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~  138 (220)
                      ++++|||||||+|..++.+|+.   +.+|+++|. +++++.+++|+..++.           ..++++...|..+.. ..
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~  126 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANL-----------NDRVEVRTGLALDSLQQI  126 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            5789999999999999999987   678999998 6799999999998776           356888886654321 11


Q ss_pred             ccc-CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc------------hHHHHHHHHHhc--CCeEEE
Q 027659          139 KAV-APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNVKL  203 (220)
Q Consensus       139 ~~~-~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~------------~~~~~f~~~~~~--~f~v~~  203 (220)
                      ... ..+||+|++...  ......+++.+.++|+|||.+++.......            .....|.+.+..  .|....
T Consensus       127 ~~~~~~~fD~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  204 (223)
T 3duw_A          127 ENEKYEPFDFIFIDAD--KQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSNDPRVQGIRRFYELIAAEPRVSATA  204 (223)
T ss_dssp             HHTTCCCCSEEEECSC--GGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEEE
T ss_pred             HhcCCCCcCEEEEcCC--cHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccchHHHHHHHHHHHHhhCCCeEEEE
Confidence            111 257999997655  445678999999999999988775444331            123567666643  465555


Q ss_pred             ee
Q 027659          204 VP  205 (220)
Q Consensus       204 v~  205 (220)
                      ++
T Consensus       205 ~p  206 (223)
T 3duw_A          205 LQ  206 (223)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.48  E-value=5.6e-13  Score=114.11  Aligned_cols=138  Identities=14%  Similarity=0.115  Sum_probs=97.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-cccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~~~  141 (220)
                      ++.+|||+|||+|..++.+|+.+.+|+++|. +++++.+++|++.|+.            .++++...|..+... ....
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~------------~~~~~~~~d~~~~~~~~~~~  276 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL------------GNVRVLEANAFDLLRRLEKE  276 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEESCHHHHHHHHHHT
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC------------CCceEEECCHHHHHHHHHhc
Confidence            6779999999999999999988667999999 6799999999999986            347888765533211 1112


Q ss_pred             CCCccEEEEecC-CCC---------CChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHH----HH-hcCCeEEEeeC
Q 027659          142 APPFDYIIGTDV-YAE---------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ----MW-KSNFNVKLVPK  206 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~---------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~----~~-~~~f~v~~v~~  206 (220)
                      ..+||+|++.++ |..         .....++..+.++|+|||.++++........ ..|.+    .+ +.+..++.+..
T Consensus       277 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~~~i~~~~~~~g~~~~~i~~  355 (382)
T 1wxx_A          277 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTE-PLFYAMVAEAAQDAHRLLRVVEK  355 (382)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCH-HHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCH-HHHHHHHHHHHHHcCCeEEEEEc
Confidence            568999999888 553         2356788888899999999999877655432 22322    33 23555665554


Q ss_pred             CCCCcccC
Q 027659          207 AKESTMWG  214 (220)
Q Consensus       207 ~~~~~~~~  214 (220)
                      ....++|.
T Consensus       356 ~~~~~d~p  363 (382)
T 1wxx_A          356 RGQPFDHP  363 (382)
T ss_dssp             ECCCTTSC
T ss_pred             CCCCCCCC
Confidence            44444443

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.48  E-value=3.1e-13  Score=110.44  Aligned_cols=101  Identities=17%  Similarity=0.215  Sum_probs=83.5

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++.+|||+|||+|..+..++..+.+|+++|. +++++.++++.                 .++.+...|..+.   +. 
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~---~~-  114 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY-----------------PHLHFDVADARNF---RV-  114 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------------TTSCEEECCTTTC---CC-
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-----------------CCCEEEECChhhC---Cc-
Confidence            36779999999999999999998889999999 56998887764                 1467777665442   22 


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      +++||+|+++.+ ++......+++.+.++|+|||.+++......
T Consensus       115 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~  158 (279)
T 3ccf_A          115 DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKG  158 (279)
T ss_dssp             SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCc
Confidence            568999999999 7777899999999999999999999877543

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.48  E-value=1.6e-12  Score=110.77  Aligned_cols=127  Identities=11%  Similarity=0.049  Sum_probs=97.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+.+|||+|||+|..+..+++.  +.+++++|++++++.+++++...++           ..++++...|..+.  .   
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l-----------~~~v~~~~~d~~~~--~---  265 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGL-----------ADRCEILPGDFFET--I---  265 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTTC--C---
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCc-----------CCceEEeccCCCCC--C---
Confidence            5679999999999999999987  4589999997799999999987765           46899999777522  2   


Q ss_pred             CCCccEEEEecC-CCCCCh--HHHHHHHHHhhCCCcEEEEEEEecCch---------------------HHHHHHHHHhc
Q 027659          142 APPFDYIIGTDV-YAEHLL--EPLLQTIFALSGPKTTILLGYEIRSTS---------------------VHEQMLQMWKS  197 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~--~~l~~~l~~~l~~~g~~~i~~~~r~~~---------------------~~~~f~~~~~~  197 (220)
                      +..||+|+++.+ ++....  ..+++.+.++|+|||.+++........                     ..+.|.+.+++
T Consensus       266 p~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~  345 (369)
T 3gwz_A          266 PDGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEK  345 (369)
T ss_dssp             CSSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHT
T ss_pred             CCCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHH
Confidence            237999999999 544433  479999999999999999987654331                     12445555544


Q ss_pred             -CCeEEEeeC
Q 027659          198 -NFNVKLVPK  206 (220)
Q Consensus       198 -~f~v~~v~~  206 (220)
                       +|++..+..
T Consensus       346 aGf~~~~~~~  355 (369)
T 3gwz_A          346 SGLRVERSLP  355 (369)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCCeEEEEEE
Confidence             788876643

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.47  E-value=4.1e-13  Score=105.03  Aligned_cols=99  Identities=15%  Similarity=0.124  Sum_probs=81.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ++.+|||+|||+|..+..+   +. +|+++|. +++++.++++.                 .++.+...|..+   .+..
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~---~~~~   92 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----------------PEATWVRAWGEA---LPFP   92 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----------------TTSEEECCCTTS---CCSC
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEccccc---CCCC
Confidence            6789999999999988877   77 8999999 56998888775                 145666655443   3334


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      .++||+|+++.+ ++......+++.+.++|+|||.++++...+..
T Consensus        93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~  137 (211)
T 2gs9_A           93 GESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALS  137 (211)
T ss_dssp             SSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS
T ss_pred             CCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC
Confidence            578999999999 77788999999999999999999999887654

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.47  E-value=1.4e-13  Score=113.11  Aligned_cols=153  Identities=16%  Similarity=0.099  Sum_probs=93.9

Q ss_pred             CCCCcEEEeCCcccHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhh------------hhhccCCCC------CCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNT------------SRISQMNPG------SDLL  122 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~------------~~~~~~~~~------~~~~  122 (220)
                      .++.+|||||||+|..++.++. .+.+|+++|+ ++|++.+++++....            .........      ....
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  149 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  149 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence            4678999999999996665554 3678999999 569999988654210            000000000      0000


Q ss_pred             CceEEEEeeeCCCCCc---cccCCCccEEEEecC-CC----CCChHHHHHHHHHhhCCCcEEEEEEEecC----------
Q 027659          123 GSIQAVELDWGNEDHI---KAVAPPFDYIIGTDV-YA----EHLLEPLLQTIFALSGPKTTILLGYEIRS----------  184 (220)
Q Consensus       123 ~~v~~~~ldw~~~~~~---~~~~~~fD~V~~~d~-y~----~~~~~~l~~~l~~~l~~~g~~~i~~~~r~----------  184 (220)
                      ..+.+...|..+....   ...+++||+|+++.+ ++    ......+++.+.++|+|||.+++......          
T Consensus       150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~~~~~~  229 (289)
T 2g72_A          150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGEARL  229 (289)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETTEEE
T ss_pred             hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceEEcCCeee
Confidence            0134555555442111   122457999999999 55    34678999999999999999998742211          


Q ss_pred             ---chHHHHHHHHHh-cCCeEEEeeCCCCCcccCC
Q 027659          185 ---TSVHEQMLQMWK-SNFNVKLVPKAKESTMWGN  215 (220)
Q Consensus       185 ---~~~~~~f~~~~~-~~f~v~~v~~~~~~~~~~~  215 (220)
                         .-..+.+.+.++ .+|++..+........|..
T Consensus       230 ~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~  264 (289)
T 2g72_A          230 TVVPVSEEEVREALVRSGYKVRDLRTYIMPAHLQT  264 (289)
T ss_dssp             ECCCCCHHHHHHHHHHTTEEEEEEEEEECCGGGCC
T ss_pred             eeccCCHHHHHHHHHHcCCeEEEeeEeeccccccc
Confidence               012355666665 4898877665544444443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.47  E-value=1.3e-13  Score=114.33  Aligned_cols=104  Identities=14%  Similarity=0.103  Sum_probs=83.5

Q ss_pred             CCCCcEEEeCCcccHHHHHHH-H--hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMA-L--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la-~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .++.+|||+|||+|..++.+| .  .+.+|+++|+ +++++.+++|+..++.           ..++++...|+.+.   
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---  182 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL-----------AGQITLHRQDAWKL---  182 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEECCGGGC---
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEECchhcC---
Confidence            367899999999999999985 2  2568999999 6699999999987765           34689998776553   


Q ss_pred             cccCCCccEEEEecC-CCCCChH---HHHHHHHHhhCCCcEEEEEEE
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLE---PLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~---~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +. .++||+|+++.+ ++.....   .+++.+.++|+|||.+++...
T Consensus       183 ~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  228 (305)
T 3ocj_A          183 DT-REGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFL  228 (305)
T ss_dssp             CC-CSCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             Cc-cCCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            22 378999999998 6554444   479999999999999998773

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.47  E-value=3.1e-13  Score=107.84  Aligned_cols=101  Identities=13%  Similarity=0.161  Sum_probs=82.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHH--hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc-
Q 027659           64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~--~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~-  139 (220)
                      ++++|||||||+|..++.+|+  .+.+|+++|+ +++++.+++|++.++.           ..++++...|..+.  .+ 
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~~~  137 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHF-----------ENQVRIIEGNALEQ--FEN  137 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTC-----------TTTEEEEESCGGGC--HHH
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECCHHHH--HHh
Confidence            578999999999999999998  4678999999 6799999999998875           35789988666443  22 


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ...++||+|++...  ......+++.+.++|+|||.+++.
T Consensus       138 ~~~~~fD~V~~~~~--~~~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          138 VNDKVYDMIFIDAA--KAQSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             HTTSCEEEEEEETT--SSSHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hccCCccEEEEcCc--HHHHHHHHHHHHHhcCCCeEEEEe
Confidence            23578999996544  555788999999999999999873

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.46  E-value=1.6e-12  Score=112.96  Aligned_cols=140  Identities=12%  Similarity=0.104  Sum_probs=100.2

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      .+..+.+++.+..       ....+.+|||||||+|..++.+|+.+.+|+++|. +++++.+++|++.|+.         
T Consensus       270 ~~e~l~~~~~~~l-------~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~---------  333 (433)
T 1uwv_A          270 VNQKMVARALEWL-------DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL---------  333 (433)
T ss_dssp             HHHHHHHHHHHHH-------TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC---------
T ss_pred             HHHHHHHHHHHhh-------cCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC---------
Confidence            3555666665543       2335679999999999999999998889999999 6799999999999876         


Q ss_pred             CCCCceEEEEeeeCCCCC-ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hc
Q 027659          120 DLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KS  197 (220)
Q Consensus       120 ~~~~~v~~~~ldw~~~~~-~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~  197 (220)
                         .++++...|+.+... .+...++||+|+++++|...  ..+++.+.. ++|++.+|++....   ....-...+ +.
T Consensus       334 ---~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~--~~~~~~l~~-~~p~~ivyvsc~p~---tlard~~~l~~~  404 (433)
T 1uwv_A          334 ---QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA--AGVMQQIIK-LEPIRIVYVSCNPA---TLARDSEALLKA  404 (433)
T ss_dssp             ---CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC--HHHHHHHHH-HCCSEEEEEESCHH---HHHHHHHHHHHT
T ss_pred             ---CceEEEECCHHHHhhhhhhhcCCCCEEEECCCCccH--HHHHHHHHh-cCCCeEEEEECChH---HHHhhHHHHHHC
Confidence               479999988766321 22334689999998875432  256666554 68999999876433   222223333 46


Q ss_pred             CCeEEEee
Q 027659          198 NFNVKLVP  205 (220)
Q Consensus       198 ~f~v~~v~  205 (220)
                      +|++..+.
T Consensus       405 Gy~~~~~~  412 (433)
T 1uwv_A          405 GYTIARLA  412 (433)
T ss_dssp             TCEEEEEE
T ss_pred             CcEEEEEE
Confidence            89887753

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.46  E-value=2.4e-12  Score=109.81  Aligned_cols=144  Identities=15%  Similarity=0.167  Sum_probs=96.8

Q ss_pred             eEEEeecCeEEEEEeCCCCc-cc---cccccc----hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHH
Q 027659           13 VINLEVLGHQLQFSQDPNSK-HL---GTTVWD----ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL   84 (220)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~-~~---g~~~W~----~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~   84 (220)
                      .+.+.+.+....+.-+..+. ..   |.+.+.    -...+++.+....        ...+.+|||+|||+|..++.+|.
T Consensus       166 ~i~~~~~~d~~~~~ld~~g~~~l~~rgyr~~~~~a~l~~~la~~l~~~~--------~~~~~~vLD~gCGsG~~~i~~a~  237 (373)
T 3tm4_A          166 IFRAELIKDVFFLGIDTTGDSSLHKRPWRVYDHPAHLKASIANAMIELA--------ELDGGSVLDPMCGSGTILIELAL  237 (373)
T ss_dssp             EEEEEEETTEEEEEEESSCSSCTTCCTTCCSCCTTCCCHHHHHHHHHHH--------TCCSCCEEETTCTTCHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEEccCCcccccCCcccccCCCCccHHHHHHHHHhh--------cCCCCEEEEccCcCcHHHHHHHH
Confidence            34556667666666655322 11   222221    1344555554331        23677999999999999999999


Q ss_pred             hCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC---
Q 027659           85 LGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL---  158 (220)
Q Consensus        85 ~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~---  158 (220)
                      .+.  +|+++|+ +.+++.+++|+..+++           ..++++...|..+   .+...+.||+|+++++|....   
T Consensus       238 ~~~~~~v~g~Dis~~~l~~A~~n~~~~gl-----------~~~i~~~~~D~~~---~~~~~~~fD~Ii~npPyg~r~~~~  303 (373)
T 3tm4_A          238 RRYSGEIIGIEKYRKHLIGAEMNALAAGV-----------LDKIKFIQGDATQ---LSQYVDSVDFAISNLPYGLKIGKK  303 (373)
T ss_dssp             TTCCSCEEEEESCHHHHHHHHHHHHHTTC-----------GGGCEEEECCGGG---GGGTCSCEEEEEEECCCC------
T ss_pred             hCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----------CCceEEEECChhh---CCcccCCcCEEEECCCCCcccCcc
Confidence            887  8999999 6699999999998876           3578888866544   333457899999998855322   


Q ss_pred             ------hHHHHHHHHHhhCCCcEEEEEE
Q 027659          159 ------LEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       159 ------~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                            +..+++.+.++|  +|.+++..
T Consensus       304 ~~~~~ly~~~~~~l~r~l--~g~~~~i~  329 (373)
T 3tm4_A          304 SMIPDLYMKFFNELAKVL--EKRGVFIT  329 (373)
T ss_dssp             CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence                  366778888888  44444433

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.46  E-value=3e-13  Score=110.63  Aligned_cols=121  Identities=12%  Similarity=0.073  Sum_probs=92.2

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|+..+ +.            .++++...|+.+. 
T Consensus       108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~------------~~v~~~~~d~~~~-  174 (275)
T 1yb2_A          108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI------------GNVRTSRSDIADF-  174 (275)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC------------TTEEEECSCTTTC-
T ss_pred             CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC------------CcEEEEECchhcc-
Confidence            346789999999999999999987   678999999 67999999999877 53            4688888776542 


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEe
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV  204 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v  204 (220)
                         ...++||+|++..    .....+++.+.++|+|||.+++..+...  ..+.+.+.+++ +|....+
T Consensus       175 ---~~~~~fD~Vi~~~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~--~~~~~~~~l~~~Gf~~~~~  234 (275)
T 1yb2_A          175 ---ISDQMYDAVIADI----PDPWNHVQKIASMMKPGSVATFYLPNFD--QSEKTVLSLSASGMHHLET  234 (275)
T ss_dssp             ---CCSCCEEEEEECC----SCGGGSHHHHHHTEEEEEEEEEEESSHH--HHHHHHHHSGGGTEEEEEE
T ss_pred             ---CcCCCccEEEEcC----cCHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCeEEEE
Confidence               1346899999843    3346788999999999999999876542  23455566644 6766443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.46  E-value=1e-13  Score=110.06  Aligned_cols=115  Identities=17%  Similarity=0.202  Sum_probs=85.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc-
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV-  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~-  141 (220)
                      ++.+|||+|||+|..+..+++.+++|+++|. +++++.++++     .            .++++...|+.+.  ++.. 
T Consensus        48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~------------~~~~~~~~d~~~~--~~~~~  108 (226)
T 3m33_A           48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN-----A------------PHADVYEWNGKGE--LPAGL  108 (226)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH-----C------------TTSEEEECCSCSS--CCTTC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh-----C------------CCceEEEcchhhc--cCCcC
Confidence            6789999999999999999999999999999 6699999887     1            3678888777432  3333 


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEee
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~  205 (220)
                      .++||+|+++.     ....+++.+.++|+|||.++........   ..+.+.++ .+|++..+.
T Consensus       109 ~~~fD~v~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~~---~~~~~~l~~~Gf~~~~~~  165 (226)
T 3m33_A          109 GAPFGLIVSRR-----GPTSVILRLPELAAPDAHFLYVGPRLNV---PEVPERLAAVGWDIVAED  165 (226)
T ss_dssp             CCCEEEEEEES-----CCSGGGGGHHHHEEEEEEEEEEESSSCC---THHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEeCC-----CHHHHHHHHHHHcCCCcEEEEeCCcCCH---HHHHHHHHHCCCeEEEEE
Confidence            57899999983     3567788899999999999832222222   34445554 477775554

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.46  E-value=3.7e-13  Score=106.89  Aligned_cols=121  Identities=13%  Similarity=0.090  Sum_probs=88.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      +|.+|||+|||+|.+++.+|+.+.  +|+++|+ +.+++.+++|++.|++           ..++++...|+.+.-  + 
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----------~~~i~~~~~d~l~~l--~-   80 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGL-----------KEKIQVRLANGLAAF--E-   80 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGC--C-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEECchhhhc--c-
Confidence            567999999999999999999874  5999999 6699999999999987           457999987764321  1 


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEE
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK  202 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~  202 (220)
                      ...+||+|+.+.. ....+..++......|+++|.+++... ........++.  +.+|.+.
T Consensus        81 ~~~~~D~IviaG~-Gg~~i~~Il~~~~~~L~~~~~lVlq~~-~~~~~vr~~L~--~~Gf~i~  138 (225)
T 3kr9_A           81 ETDQVSVITIAGM-GGRLIARILEEGLGKLANVERLILQPN-NREDDLRIWLQ--DHGFQIV  138 (225)
T ss_dssp             GGGCCCEEEEEEE-CHHHHHHHHHHTGGGCTTCCEEEEEES-SCHHHHHHHHH--HTTEEEE
T ss_pred             cCcCCCEEEEcCC-ChHHHHHHHHHHHHHhCCCCEEEEECC-CCHHHHHHHHH--HCCCEEE
Confidence            1226999987666 113367888888888999999877444 33322333332  3466653

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.46  E-value=4.6e-14  Score=112.74  Aligned_cols=103  Identities=19%  Similarity=0.185  Sum_probs=78.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ++.+|||||||+|..+..+++.+. +|+++|. +++++.+++++..++             .++.+...|+.+.. .+..
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-------------~~v~~~~~d~~~~~-~~~~  125 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVA-PTLP  125 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHG-GGSC
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-------------CCeEEEecCHHHhh-cccC
Confidence            567999999999999999988766 6999999 669999998776543             36788886664421 1234


Q ss_pred             CCCccEEEE-ec----C-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          142 APPFDYIIG-TD----V-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       142 ~~~fD~V~~-~d----~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      +++||+|++ .-    . .+....+.+++.+.++|+|||.+++..
T Consensus       126 ~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             CCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence            578999999 22    2 333345577999999999999998764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.45  E-value=1.2e-12  Score=107.68  Aligned_cols=101  Identities=16%  Similarity=0.209  Sum_probs=81.1

Q ss_pred             CCCCCcEEEeCCccc-HHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGCG-VAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G-~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..++.+|||+|||+| +.++.+|+ .|++|+++|+ +++++.++++++..+.            .++++...|..   .+
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl------------~~v~~v~gDa~---~l  184 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV------------DGVNVITGDET---VI  184 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC------------CSEEEEESCGG---GG
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC------------CCeEEEECchh---hC
Confidence            457889999999996 45567776 5889999999 6799999999988764            47888885543   33


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +  .+.||+|+.+..  ......+++.+.++|+|||++++...
T Consensus       185 ~--d~~FDvV~~~a~--~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          185 D--GLEFDVLMVAAL--AEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             G--GCCCSEEEECTT--CSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             C--CCCcCEEEECCC--ccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            2  578999997654  46678999999999999999998653

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.45  E-value=7.3e-13  Score=105.54  Aligned_cols=126  Identities=13%  Similarity=0.066  Sum_probs=89.2

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..+.+|||+|||+|..+..+++. |  .+|+++|. +++++.+.++++.+              .++.+...|..+....
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--------------~~v~~~~~d~~~~~~~  141 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--------------TNIIPVIEDARHPHKY  141 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--------------TTEEEECSCTTCGGGG
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--------------CCeEEEEcccCChhhh
Confidence            35789999999999999999976 3  58999999 56888888887765              2678888666553323


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc----hH---HHHHHHHHh-cCCeEEE
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SV---HEQMLQMWK-SNFNVKL  203 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~----~~---~~~f~~~~~-~~f~v~~  203 (220)
                      +...++||+|+++.+ .......++..+.++|+|||.+++....+..    ..   +..-.+.++ .+|++..
T Consensus       142 ~~~~~~~D~V~~~~~-~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~  213 (233)
T 2ipx_A          142 RMLIAMVDVIFADVA-QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAVFASEVKKMQQENMKPQE  213 (233)
T ss_dssp             GGGCCCEEEEEECCC-CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSSCHHHHHHHHHHTTGGGTEEEEE
T ss_pred             cccCCcEEEEEEcCC-CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCCCHHHHHHHHHHHHHHCCCceEE
Confidence            334678999998655 2233456788899999999999997765321    11   111134444 4898866

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.45  E-value=2e-13  Score=110.02  Aligned_cols=119  Identities=13%  Similarity=0.084  Sum_probs=78.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh----CCeEEEecc-hhhHHHHHHHHHHh---hhhhcc---------CCCC-----CCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWN---TSRISQ---------MNPG-----SDL  121 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~----g~~v~~~D~-~~~l~~~~~n~~~n---~~~~~~---------~~~~-----~~~  121 (220)
                      ++.+|||+|||+|..++.++..    +.+|+++|+ +++++.+++|+..+   +.....         ....     ...
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            5679999999999999999976    467999999 66999999998876   431000         0000     000


Q ss_pred             CCceE-------------EEEeeeCCCCCcc--ccCCCccEEEEecCC--CC--------CChHHHHHHHHHhhCCCcEE
Q 027659          122 LGSIQ-------------AVELDWGNEDHIK--AVAPPFDYIIGTDVY--AE--------HLLEPLLQTIFALSGPKTTI  176 (220)
Q Consensus       122 ~~~v~-------------~~~ldw~~~~~~~--~~~~~fD~V~~~d~y--~~--------~~~~~l~~~l~~~l~~~g~~  176 (220)
                      ..+++             +...|+.+.....  ....+||+|+++++|  ..        .....+++.+.++|+|||.+
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l  210 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI  210 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence            00144             7776654421100  023489999999882  22        12458889999999999999


Q ss_pred             EEEEEe
Q 027659          177 LLGYEI  182 (220)
Q Consensus       177 ~i~~~~  182 (220)
                      +++...
T Consensus       211 ~~~~~~  216 (250)
T 1o9g_A          211 AVTDRS  216 (250)
T ss_dssp             EEEESS
T ss_pred             EEeCcc
Confidence            985433

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.45  E-value=4.1e-13  Score=106.14  Aligned_cols=129  Identities=18%  Similarity=0.112  Sum_probs=93.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~  138 (220)
                      ++++|||||||+|..++.+++.   +.+|+++|. +++++.++++++.++.           ..++++...|..+... .
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~  132 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGL-----------SDKIGLRLSPAKDTLAEL  132 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----------CCceEEEeCCHHHHHHHh
Confidence            5679999999999999999986   678999999 6799999999998876           3568888866533211 1


Q ss_pred             cc--cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCch------------HHHHHHHHHhc--CCeEE
Q 027659          139 KA--VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS------------VHEQMLQMWKS--NFNVK  202 (220)
Q Consensus       139 ~~--~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~------------~~~~f~~~~~~--~f~v~  202 (220)
                      ..  ..++||+|+....  ......+++.+.++|+|||.+++........            ....|.+.+..  .|+..
T Consensus       133 ~~~~~~~~fD~v~~~~~--~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  210 (225)
T 3tr6_A          133 IHAGQAWQYDLIYIDAD--KANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQSENNQLIRLFNQKVYKDERVDMI  210 (225)
T ss_dssp             HTTTCTTCEEEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             hhccCCCCccEEEECCC--HHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccChHHHHHHHHHHHHhcCCCeEEE
Confidence            00  0168999995543  4557789999999999999998865432211            24566666543  45555


Q ss_pred             Eee
Q 027659          203 LVP  205 (220)
Q Consensus       203 ~v~  205 (220)
                      .++
T Consensus       211 ~lp  213 (225)
T 3tr6_A          211 LIP  213 (225)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            554

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.45  E-value=1.2e-13  Score=121.50  Aligned_cols=104  Identities=16%  Similarity=0.186  Sum_probs=82.8

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++++|||||||+|.+++.+++.++ +|+++|.+++++.+++|+..|++           ..++++...|+.+..    
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl-----------~~~v~~~~~d~~~~~----  220 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNL-----------TDRIVVIPGKVEEVS----  220 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEESCTTTCC----
T ss_pred             hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhCc----
Confidence            34678999999999999999999875 79999996699999999999876           468999997776532    


Q ss_pred             cCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEE
Q 027659          141 VAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .+++||+|+++.+ |+.  +.....+..+.++|+|||.+++..
T Consensus       221 ~~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~~  263 (480)
T 3b3j_A          221 LPEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPTI  263 (480)
T ss_dssp             CSSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESCE
T ss_pred             cCCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            2358999999988 643  334455556778899999998543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.45  E-value=5.3e-12  Score=98.43  Aligned_cols=123  Identities=24%  Similarity=0.291  Sum_probs=86.6

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++.+|||+|||+|..++.+++.|. +|+++|+ +++++.+++|+..++.             ++.+...|+.+.    
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~----  109 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------------KFKVFIGDVSEF----  109 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------------SEEEEESCGGGC----
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-------------CEEEEECchHHc----
Confidence            34678999999999999999999876 5999999 6799999999887753             678887665442    


Q ss_pred             ccCCCccEEEEecCCCC---CChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEeeCC
Q 027659          140 AVAPPFDYIIGTDVYAE---HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVPKA  207 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~---~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~~~  207 (220)
                        +.+||+|+++++|+.   .....+++.+.+++   |.+|+.... .....+.+.+.++ .+|+++.+...
T Consensus       110 --~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l---~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~  175 (207)
T 1wy7_A          110 --NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS---DVVYSIHLA-KPEVRRFIEKFSWEHGFVVTHRLTT  175 (207)
T ss_dssp             --CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC---SEEEEEEEC-CHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             --CCCCCEEEEcCCCccccCCchHHHHHHHHHhc---CcEEEEEeC-CcCCHHHHHHHHHHCCCeEEEEEEE
Confidence              348999999998332   34456777777777   445554421 2223344444454 47877766543

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.44  E-value=3.8e-13  Score=106.81  Aligned_cols=126  Identities=11%  Similarity=0.096  Sum_probs=90.8

Q ss_pred             CCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCC-CceEEEEeeeCCCCCcc
Q 027659           65 GKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL-GSIQAVELDWGNEDHIK  139 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~-~~v~~~~ldw~~~~~~~  139 (220)
                      +.+|||||||+|..++.+|+.   +++|+++|. +++++.+++|++.++.           . .++++...|..+.  ++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~~i~~~~gda~~~--l~  123 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGY-----------SPSRVRFLLSRPLDV--MS  123 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTC-----------CGGGEEEECSCHHHH--GG
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CcCcEEEEEcCHHHH--HH
Confidence            449999999999999999974   578999998 6799999999998875           3 4788888544332  11


Q ss_pred             cc-CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEec---------Cc-h--HHHHHHHHHhc--CCeEEEe
Q 027659          140 AV-APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIR---------ST-S--VHEQMLQMWKS--NFNVKLV  204 (220)
Q Consensus       140 ~~-~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r---------~~-~--~~~~f~~~~~~--~f~v~~v  204 (220)
                      .. .++||+|++...  ......+++.+.++|+|||.+++.....         .. .  ..+.|.+.+..  .++...+
T Consensus       124 ~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  201 (221)
T 3dr5_A          124 RLANDSYQLVFGQVS--PMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARL  201 (221)
T ss_dssp             GSCTTCEEEEEECCC--TTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCCHHHHHHHHHHHHHTTCTTEEEEEE
T ss_pred             HhcCCCcCeEEEcCc--HHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCChHHHHHHHHHHHHhhCCCeeEEEe
Confidence            12 578999997544  4456788999999999999998743221         11 1  23567666654  4555555


Q ss_pred             e
Q 027659          205 P  205 (220)
Q Consensus       205 ~  205 (220)
                      |
T Consensus       202 p  202 (221)
T 3dr5_A          202 P  202 (221)
T ss_dssp             S
T ss_pred             e
Confidence            4

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.44  E-value=7.8e-13  Score=106.56  Aligned_cols=114  Identities=13%  Similarity=0.081  Sum_probs=87.9

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++.           ..++++...|+.+.  
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--  157 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----------DDRVTIKLKDIYEG--  157 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTC-----------TTTEEEECSCGGGC--
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCC-----------CCceEEEECchhhc--
Confidence            446789999999999999999987   568999999 6799999999998876           34588888776543  


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  196 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~  196 (220)
                        ....+||+|+++.+    ....+++.+.++|+|||.+++..+...  ....+.+.++
T Consensus       158 --~~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~  208 (255)
T 3mb5_A          158 --IEEENVDHVILDLP----QPERVVEHAAKALKPGGFFVAYTPCSN--QVMRLHEKLR  208 (255)
T ss_dssp             --CCCCSEEEEEECSS----CGGGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHH
T ss_pred             --cCCCCcCEEEECCC----CHHHHHHHHHHHcCCCCEEEEEECCHH--HHHHHHHHHH
Confidence              23567999998544    335678999999999999998765432  2344455554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.44  E-value=2.3e-13  Score=106.28  Aligned_cols=115  Identities=17%  Similarity=0.221  Sum_probs=87.3

Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      ..+.++|...         ..++.+|||+|||+|..+..+++.|. +|+++|+ +.+++.++++...             
T Consensus        30 ~~~~~~l~~~---------~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-------------   87 (215)
T 2pxx_A           30 SSFRALLEPE---------LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-------------   87 (215)
T ss_dssp             HHHHHHHGGG---------CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-------------
T ss_pred             HHHHHHHHHh---------cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-------------
Confidence            3466666544         23577999999999999999999887 7999999 5699999887652             


Q ss_pred             CCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC---------------CCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA---------------EHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~---------------~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                       ..++.+...|..+.   +...++||+|+++.+ .+               ......+++.+.++|+|||.+++....+
T Consensus        88 -~~~i~~~~~d~~~~---~~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A           88 -VPQLRWETMDVRKL---DFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             -CTTCEEEECCTTSC---CSCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             -CCCcEEEEcchhcC---CCCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence             13678888665543   234578999999877 22               1245788999999999999999877654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.44  E-value=2.8e-13  Score=115.83  Aligned_cols=146  Identities=12%  Similarity=0.041  Sum_probs=98.7

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHH-hCCe-EEEecc-hhhHHHHHHHHHH-------hhhhhccCCCCCCCCCceEEEEee
Q 027659           62 KLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEW-------NTSRISQMNPGSDLLGSIQAVELD  131 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~-~g~~-v~~~D~-~~~l~~~~~n~~~-------n~~~~~~~~~~~~~~~~v~~~~ld  131 (220)
                      ...+.+|||||||+|.+++.+|. .++. |+++|+ +++++.+++|++.       ++.          ...+|++...|
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl----------~~~rVefi~GD  240 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGK----------KHAEYTLERGD  240 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTB----------CCCEEEEEECC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCC----------CCCCeEEEECc
Confidence            44778999999999999999986 4664 999999 5699999887643       222          02578888865


Q ss_pred             eCCCCCccccC--CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHH--HHHHHHHhcCCeEEEeeCC
Q 027659          132 WGNEDHIKAVA--PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVH--EQMLQMWKSNFNVKLVPKA  207 (220)
Q Consensus       132 w~~~~~~~~~~--~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~--~~f~~~~~~~f~v~~v~~~  207 (220)
                      ..+   .+...  ..||+|+++.+|+.......+..+.+.|+|||.+++.......+..  ..-++-....+++++....
T Consensus       241 ~~~---lp~~d~~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~~i~~rnl~di~~il~v~el~~~  317 (438)
T 3uwp_A          241 FLS---EEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPL  317 (438)
T ss_dssp             TTS---HHHHHHHHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSCTTCCCCSSSTTSGGGSEEEEECCCC
T ss_pred             ccC---CccccccCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccCCCCCCCcccccChhhhheeeeccCC
Confidence            543   22211  4799999988854556666777888999999999987554443210  0001112345677776666


Q ss_pred             CCCcccCCCCCCC
Q 027659          208 KESTMWGNPLGLY  220 (220)
Q Consensus       208 ~~~~~~~~~~~~~  220 (220)
                      ...-.|....+.|
T Consensus       318 ~~sVSWT~~~g~y  330 (438)
T 3uwp_A          318 KGSVSWTGKPVSY  330 (438)
T ss_dssp             TTCCCTTSSCCCC
T ss_pred             CCceeeccCCccE
Confidence            6666666666555

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.44  E-value=9.1e-13  Score=104.88  Aligned_cols=120  Identities=15%  Similarity=0.104  Sum_probs=88.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      +|.+|||+|||+|.+++.+++.|.  +|+++|+ +.+++.+++|++.|++           ..++++...|+.+..   .
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl-----------~~~I~~~~gD~l~~~---~   86 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGL-----------TSKIDVRLANGLSAF---E   86 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGC---C
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECchhhcc---c
Confidence            567999999999999999999874  5999999 5699999999999987           467999987664432   1


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEE
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK  202 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~  202 (220)
                      ...+||+|+.+.+ -  ..+..++......|+++|.++++.. ........|+.  +.+|.+.
T Consensus        87 ~~~~~D~IviaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp~-~~~~~lr~~L~--~~Gf~i~  144 (230)
T 3lec_A           87 EADNIDTITICGMGG--RLIADILNNDIDKLQHVKTLVLQPN-NREDDLRKWLA--ANDFEIV  144 (230)
T ss_dssp             GGGCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEES-SCHHHHHHHHH--HTTEEEE
T ss_pred             cccccCEEEEeCCch--HHHHHHHHHHHHHhCcCCEEEEECC-CChHHHHHHHH--HCCCEEE
Confidence            2237999887666 3  4477788888888999998777553 33322333332  3466663

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.44  E-value=8.9e-13  Score=110.33  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=86.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .++.+|||+|||+|..+..+++.  +.+++++|++++++.+++++..++.           ..++++...|+.+..    
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~----  228 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGV-----------ASRYHTIAGSAFEVD----  228 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTC-----------GGGEEEEESCTTTSC----
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC-----------CcceEEEecccccCC----
Confidence            35679999999999999999987  5689999998999999999987765           346899987765431    


Q ss_pred             cCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          141 VAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .+..||+|+++.+ ++.  .....+++.+.++|+|||.+++.....
T Consensus       229 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~  274 (335)
T 2r3s_A          229 YGNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIP  274 (335)
T ss_dssp             CCSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence            2345999999999 554  445789999999999999999886543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.43  E-value=4.4e-13  Score=106.84  Aligned_cols=99  Identities=18%  Similarity=0.165  Sum_probs=79.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+.+|||+|||+|..+..+++. .+|+++|. +++++.+++++..++             .++.+...|..+.   + ..
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~-------------~~~~~~~~d~~~~---~-~~   94 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN-------------RHVDFWVQDMREL---E-LP   94 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT-------------CCCEEEECCGGGC---C-CS
T ss_pred             CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC-------------CceEEEEcChhhc---C-CC
Confidence            4579999999999999999988 88999999 679999999987654             3678887665443   2 23


Q ss_pred             CCccEEEEec-C-CCC---CChHHHHHHHHHhhCCCcEEEEEE
Q 027659          143 PPFDYIIGTD-V-YAE---HLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       143 ~~fD~V~~~d-~-y~~---~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ++||+|+++. + .+.   .....+++.+.++|+|||.+++..
T Consensus        95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  137 (243)
T 3d2l_A           95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDV  137 (243)
T ss_dssp             SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence            6899999974 5 333   456788999999999999999854

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.43  E-value=5.8e-13  Score=110.54  Aligned_cols=114  Identities=11%  Similarity=0.058  Sum_probs=77.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC---Cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~---~~  138 (220)
                      .+.+|||||||+|.....++.. +++|+++|+ ++|++.|++.....+....      ...-++.+...+.....   .+
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~------~~~~~~~f~~~d~~~d~~~~~l  121 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIK------TKYYKFDYIQETIRSDTFVSSV  121 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----------CCCEEEEEECCTTSSSHHHHH
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcccccc------ccccccchhhhhcccchhhhhh
Confidence            4789999999999755555544 468999999 5699999987765432000      00002455554432111   11


Q ss_pred             --cccCCCccEEEEecC--CC--CCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          139 --KAVAPPFDYIIGTDV--YA--EHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       139 --~~~~~~fD~V~~~d~--y~--~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                        +...++||+|+|..+  |.  ......+++.+.++|+|||.++++.+.+
T Consensus       122 ~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~  172 (302)
T 2vdw_A          122 REVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDG  172 (302)
T ss_dssp             HTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             hccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence              123568999999887  42  3457899999999999999999988754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.43  E-value=6.5e-13  Score=105.73  Aligned_cols=104  Identities=14%  Similarity=0.095  Sum_probs=78.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~  138 (220)
                      .++.+|||||||+|..++.+++. + .+|+++|. +++++.+++|+..+              .++.+...|...... .
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------~~v~~~~~d~~~~~~~~  138 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--------------ENIIPILGDANKPQEYA  138 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--------------TTEEEEECCTTCGGGGT
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--------------CCeEEEECCCCCccccc
Confidence            36789999999999999999987 4 67999999 66999998886543              367887766554211 2


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +. ...||+|+ .++........+++.+.++|+|||.++++...
T Consensus       139 ~~-~~~~D~v~-~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  180 (230)
T 1fbn_A          139 NI-VEKVDVIY-EDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA  180 (230)
T ss_dssp             TT-SCCEEEEE-ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             cc-CccEEEEE-EecCChhHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            22 36899999 33322333577899999999999999998543

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.43  E-value=1.1e-12  Score=111.51  Aligned_cols=102  Identities=14%  Similarity=0.044  Sum_probs=83.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ++.+|||+|||+|..+..+++.  +.+++++|++++++.+++++..++.           ..++++...|+.+.  .   
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~---  245 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL-----------ADRVTVAEGDFFKP--L---  245 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--C---
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCC-----------CCceEEEeCCCCCc--C---
Confidence            5679999999999999999987  4589999996699999999988765           35799999776542  2   


Q ss_pred             CCCccEEEEecC-CCCCCh--HHHHHHHHHhhCCCcEEEEEEE
Q 027659          142 APPFDYIIGTDV-YAEHLL--EPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~--~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +..||+|+++.+ ++....  ..+++.+.++|+|||.+++...
T Consensus       246 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          246 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            234999999999 554433  4899999999999999998765

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.43  E-value=6.2e-13  Score=111.96  Aligned_cols=108  Identities=15%  Similarity=0.155  Sum_probs=85.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..++. |+.+.+|+++|. +++++.+++|++.|+.           ..++.+...|..+..      
T Consensus       195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l-----------~~~v~~~~~D~~~~~------  256 (336)
T 2yx1_A          195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKL-----------EHKIIPILSDVREVD------  256 (336)
T ss_dssp             TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEESCGGGCC------
T ss_pred             CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECChHHhc------
Confidence            678999999999999999 885567999999 6799999999999986           357888886654431      


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  196 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~  196 (220)
                      .+||+|+++++ +.    ..++..+.++|+|||.+++.......   ..+.+.++
T Consensus       257 ~~fD~Vi~dpP~~~----~~~l~~~~~~L~~gG~l~~~~~~~~~---~~~~~~l~  304 (336)
T 2yx1_A          257 VKGNRVIMNLPKFA----HKFIDKALDIVEEGGVIHYYTIGKDF---DKAIKLFE  304 (336)
T ss_dssp             CCEEEEEECCTTTG----GGGHHHHHHHEEEEEEEEEEEEESSS---HHHHHHHH
T ss_pred             CCCcEEEECCcHhH----HHHHHHHHHHcCCCCEEEEEEeecCc---hHHHHHHH
Confidence            68999999877 43    37788888999999998887665552   34444443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.42  E-value=8.2e-13  Score=105.17  Aligned_cols=101  Identities=15%  Similarity=0.150  Sum_probs=82.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||+|||+|..++.+++.  +.+|+++|. +++++.+++|+..++.           ..++.+...|+.+.  .+.
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~~~  120 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGL-----------ESRIELLFGDALQL--GEK  120 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCGGGS--HHH
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEECCHHHH--HHh
Confidence            5679999999999999999987  578999999 6799999999988765           34688887665442  121


Q ss_pred             c--CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          141 V--APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       141 ~--~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      .  .+.||+|++..+  ......+++.+.++|+|||.+++.
T Consensus       121 ~~~~~~fD~I~~~~~--~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          121 LELYPLFDVLFIDAA--KGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             HTTSCCEEEEEEEGG--GSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccCCCccEEEECCC--HHHHHHHHHHHHHHcCCCeEEEEE
Confidence            2  468999998776  236788999999999999999886

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.42  E-value=3e-12  Score=106.84  Aligned_cols=126  Identities=13%  Similarity=-0.003  Sum_probs=89.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..+.+|||+|||+|..++.++..   +.+|+++|. +.+++.+++|++.++.            .++.+...|..+.   
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~------------~~v~~~~~D~~~~---  181 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------------LNVILFHSSSLHI---  181 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------------CSEEEESSCGGGG---
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC------------CeEEEEECChhhc---
Confidence            36789999999999999999975   257999999 5699999999998875            3678887555432   


Q ss_pred             cccCCCccEEEEecC-CCCC----C------------------hHHHHHHHHHhhCCCcEEEEEEEecCc----hHHHHH
Q 027659          139 KAVAPPFDYIIGTDV-YAEH----L------------------LEPLLQTIFALSGPKTTILLGYEIRST----SVHEQM  191 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~----~------------------~~~l~~~l~~~l~~~g~~~i~~~~r~~----~~~~~f  191 (220)
                      +...+.||+|++..+ ....    .                  ...+++.+.++|+|||.++++...-.+    .+...|
T Consensus       182 ~~~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~Ene~~v~~~  261 (315)
T 1ixk_A          182 GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWA  261 (315)
T ss_dssp             GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHH
T ss_pred             ccccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChHHhHHHHHHH
Confidence            223568999998654 2111    0                  147888899999999999887654332    223344


Q ss_pred             HHHHhcCCeEEEee
Q 027659          192 LQMWKSNFNVKLVP  205 (220)
Q Consensus       192 ~~~~~~~f~v~~v~  205 (220)
                      ++.  .+|++..++
T Consensus       262 l~~--~~~~~~~~~  273 (315)
T 1ixk_A          262 LDN--FDVELLPLK  273 (315)
T ss_dssp             HHH--SSEEEECCC
T ss_pred             Hhc--CCCEEecCC
Confidence            432  356665544

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.42  E-value=5.9e-14  Score=112.45  Aligned_cols=103  Identities=18%  Similarity=0.182  Sum_probs=78.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .|.+|||||||+|..+..+++.+ .+|+++|. +++++.++++....+             .++.+...+|.+.. ....
T Consensus        60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~-------------~~~~~~~~~a~~~~-~~~~  125 (236)
T 3orh_A           60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVA-PTLP  125 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHG-GGSC
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC-------------CceEEEeehHHhhc-cccc
Confidence            67899999999999999998764 56999999 679999999877654             36777777764432 1234


Q ss_pred             CCCccEEEEecC------CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          142 APPFDYIIGTDV------YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       142 ~~~fD~V~~~d~------y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .++||.|+...+      .+....+.+++.+.++|||||++.+..
T Consensus       126 ~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          126 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            678999975332      334456788999999999999988754

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.42  E-value=2.9e-12  Score=107.41  Aligned_cols=103  Identities=13%  Similarity=0.009  Sum_probs=84.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ...+|||+|||+|..+..+++.  +.+++++|++++++.+++++...+.           ..++++...|..+.  .   
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~---  232 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGL-----------SGRAQVVVGSFFDP--L---  232 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--C---
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCc-----------CcCeEEecCCCCCC--C---
Confidence            4579999999999999999975  4579999997799999999887765           46899999776522  2   


Q ss_pred             CCCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +..||+|++..+ ++...  ...+++.+.++|+|||.+++....
T Consensus       233 p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  276 (332)
T 3i53_A          233 PAGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAV  276 (332)
T ss_dssp             CCSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CCCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeec
Confidence            227999999999 54444  588999999999999999998654

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.42  E-value=2e-12  Score=105.64  Aligned_cols=123  Identities=13%  Similarity=0.028  Sum_probs=91.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++.           ..++.+...|+.+.  
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--  176 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----------IERVTIKVRDISEG--  176 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----------GGGEEEECCCGGGC--
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-----------CCCEEEEECCHHHc--
Confidence            346789999999999999999987   468999998 6799999999988764           24688888766543  


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEee
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~  205 (220)
                      .  ..+.||+|+++.+    ....+++.+.++|+|||.+++..+...  ....+.+.++ .+|...++.
T Consensus       177 ~--~~~~~D~V~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~~~gf~~~~~~  237 (277)
T 1o54_A          177 F--DEKDVDALFLDVP----DPWNYIDKCWEALKGGGRFATVCPTTN--QVQETLKKLQELPFIRIEVW  237 (277)
T ss_dssp             C--SCCSEEEEEECCS----CGGGTHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHHHSSEEEEEEE
T ss_pred             c--cCCccCEEEECCc----CHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHHCCCceeEEE
Confidence            1  2457999998543    334778888999999999998776432  2345555554 467655443

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.41  E-value=5.4e-13  Score=108.01  Aligned_cols=100  Identities=16%  Similarity=0.159  Sum_probs=79.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||||||+|..+..+++.+.+|+++|. +++++.++++..                .+  +...|..   ..+...
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~----------------~~--~~~~d~~---~~~~~~  112 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV----------------KN--VVEAKAE---DLPFPS  112 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC----------------SC--EEECCTT---SCCSCT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC----------------CC--EEECcHH---HCCCCC
Confidence            6779999999999999999999999999999 569988877632                11  4443333   233346


Q ss_pred             CCccEEEEecC--CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          143 PPFDYIIGTDV--YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       143 ~~fD~V~~~d~--y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ++||+|++..+  +.......+++.+.++|+|||.+++....+.
T Consensus       113 ~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~  156 (260)
T 2avn_A          113 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFY  156 (260)
T ss_dssp             TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred             CCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChH
Confidence            78999999876  4435589999999999999999999887654

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.41  E-value=1.2e-12  Score=103.18  Aligned_cols=125  Identities=13%  Similarity=0.162  Sum_probs=92.4

Q ss_pred             CCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           65 GKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      +.+|||+|||+|..+..++..    +++|. +++++.++++                   ++.+...|..+   .+...+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~-------------------~~~~~~~d~~~---~~~~~~  101 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR-------------------GVFVLKGTAEN---LPLKDE  101 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-------------------TCEEEECBTTB---CCSCTT
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-------------------CCEEEEccccc---CCCCCC
Confidence            779999999999999888765    99998 5688888765                   13566655433   233456


Q ss_pred             CccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch---------------------HHHHHHHHHhc-CCe
Q 027659          144 PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS---------------------VHEQMLQMWKS-NFN  200 (220)
Q Consensus       144 ~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~---------------------~~~~f~~~~~~-~f~  200 (220)
                      +||+|+++.+ ++......+++.+.++|+|||.+++....+...                     ..+.+.+.+++ +|+
T Consensus       102 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~  181 (219)
T 1vlm_A          102 SFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFE  181 (219)
T ss_dssp             CEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCE
T ss_pred             CeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCe
Confidence            8999999999 777788999999999999999999987654321                     12445555544 898


Q ss_pred             EEEeeCCCCCcccCC
Q 027659          201 VKLVPKAKESTMWGN  215 (220)
Q Consensus       201 v~~v~~~~~~~~~~~  215 (220)
                      +..+......+.|..
T Consensus       182 ~~~~~~~~~~~p~~~  196 (219)
T 1vlm_A          182 EFKVVQTLFKHPSEL  196 (219)
T ss_dssp             EEEEEEECCSCGGGC
T ss_pred             EEEEecccCCCCCcc
Confidence            877766555555443

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.41  E-value=8.7e-13  Score=103.95  Aligned_cols=100  Identities=18%  Similarity=0.128  Sum_probs=78.8

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++.                   ..+...|..+. ..+..
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-------------------~~~~~~d~~~~-~~~~~   90 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-------------------DHVVLGDIETM-DMPYE   90 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-------------------SEEEESCTTTC-CCCSC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-------------------CcEEEcchhhc-CCCCC
Confidence            36779999999999999999988888999998 56877776542                   14455444331 12223


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      .++||+|+++.+ ++......+++.+.++|+|||.+++..+.
T Consensus        91 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  132 (230)
T 3cc8_A           91 EEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN  132 (230)
T ss_dssp             TTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred             CCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            578999999999 77778899999999999999999998765

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.40  E-value=4.8e-12  Score=107.95  Aligned_cols=106  Identities=13%  Similarity=0.147  Sum_probs=83.6

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..++++|||+| |+|..++.+++.++  +|+++|+ +++++.+++|++.++.            .++++...|+.+.  +
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~------------~~v~~~~~D~~~~--l  234 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY------------EDIEIFTFDLRKP--L  234 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC------------CCEEEECCCTTSC--C
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CCEEEEEChhhhh--c
Confidence            34678999999 99999999998875  7999999 6799999999999875            2788988776552  2


Q ss_pred             cc-cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcE-EEEEEEe
Q 027659          139 KA-VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTT-ILLGYEI  182 (220)
Q Consensus       139 ~~-~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~-~~i~~~~  182 (220)
                      +. ..++||+|+++++|.......+++.+.++|+|||. ++++...
T Consensus       235 ~~~~~~~fD~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          235 PDYALHKFDTFITDPPETLEAIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             CTTTSSCBSEEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             hhhccCCccEEEECCCCchHHHHHHHHHHHHHcccCCeEEEEEEec
Confidence            21 24589999999885433368888999999999994 4555543

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.40  E-value=4.3e-12  Score=102.10  Aligned_cols=119  Identities=14%  Similarity=0.054  Sum_probs=90.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHh-hhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-TSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n-~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..++.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.+ +.            .++.+...|+.+. 
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~------------~~v~~~~~d~~~~-  160 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV------------ENVRFHLGKLEEA-  160 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC------------CCEEEEESCGGGC-
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC------------CCEEEEECchhhc-
Confidence            346789999999999999999987   568999998 67999999999887 52            4788888766543 


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeE
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNV  201 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v  201 (220)
                        +...+.||+|+++..    ....+++.+.++|+|||.+++..+...  ....+.+.+++ +|..
T Consensus       161 --~~~~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~gf~~  218 (258)
T 2pwy_A          161 --ELEEAAYDGVALDLM----EPWKVLEKAALALKPDRFLVAYLPNIT--QVLELVRAAEAHPFRL  218 (258)
T ss_dssp             --CCCTTCEEEEEEESS----CGGGGHHHHHHHEEEEEEEEEEESCHH--HHHHHHHHHTTTTEEE
T ss_pred             --CCCCCCcCEEEECCc----CHHHHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHHHCCCce
Confidence              223468999998533    345788999999999999998876542  23455555543 5654

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.40  E-value=1.6e-11  Score=98.24  Aligned_cols=117  Identities=15%  Similarity=0.096  Sum_probs=88.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..+.+|||+|||+|..++.+++.+.+|+++|. +++++.+++|...++.           ..++.+...|+.+..   ..
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~~~~d~~~~~---~~  155 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNL-----------GKNVKFFNVDFKDAE---VP  155 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTC-----------CTTEEEECSCTTTSC---CC
T ss_pred             CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC-----------CCcEEEEEcChhhcc---cC
Confidence            46789999999999999999988888999998 6799999999987764           356888876665431   12


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCC
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF  199 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f  199 (220)
                      .+.||+|+++..    ....+++.+.++|+|||.+++..+...  ....+.+.+++.|
T Consensus       156 ~~~~D~v~~~~~----~~~~~l~~~~~~L~~gG~l~~~~~~~~--~~~~~~~~l~~~f  207 (248)
T 2yvl_A          156 EGIFHAAFVDVR----EPWHYLEKVHKSLMEGAPVGFLLPTAN--QVIKLLESIENYF  207 (248)
T ss_dssp             TTCBSEEEECSS----CGGGGHHHHHHHBCTTCEEEEEESSHH--HHHHHHHHSTTTE
T ss_pred             CCcccEEEECCc----CHHHHHHHHHHHcCCCCEEEEEeCCHH--HHHHHHHHHHhhC
Confidence            457999998543    345778889999999999999886532  2345555554434

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.39  E-value=9.5e-13  Score=103.16  Aligned_cols=100  Identities=13%  Similarity=0.045  Sum_probs=79.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++.           ..++++...|+.+.  .+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~~  122 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGL-----------IDRVELQVGDPLGI--AA  122 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSG-----------GGGEEEEESCHHHH--HT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----------CceEEEEEecHHHH--hc
Confidence            5679999999999999999976   678999999 6799999999988765           34688888665432  12


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ...+ ||+|++...  ......+++.+.++|+|||.+++.
T Consensus       123 ~~~~-fD~v~~~~~--~~~~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          123 GQRD-IDILFMDCD--VFNGADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             TCCS-EEEEEEETT--TSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cCCC-CCEEEEcCC--hhhhHHHHHHHHHhcCCCeEEEEE
Confidence            2245 999997643  456788999999999999998874

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.39  E-value=1.3e-12  Score=108.54  Aligned_cols=115  Identities=16%  Similarity=0.048  Sum_probs=83.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC---Cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---HI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~---~~  138 (220)
                      ++.+|||||||+|..+..+++. +.+|+++|+ +++++.++++...+.....     .....++.+...|..+..   ..
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~  108 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRD-----SEYIFSAEFITADSSKELLIDKF  108 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSC-----C-CCCEEEEEECCTTTSCSTTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhccc-----ccccceEEEEEecccccchhhhc
Confidence            5679999999999999988875 458999999 5699999998876531000     001246888887766542   12


Q ss_pred             cccCCCccEEEEecC-CCC----CChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          139 KAVAPPFDYIIGTDV-YAE----HLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~----~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      +...++||+|+++.+ ++.    .....+++.+.++|+|||.++++.+..
T Consensus       109 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  158 (313)
T 3bgv_A          109 RDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS  158 (313)
T ss_dssp             SSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred             ccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCCh
Confidence            212458999999998 443    335689999999999999999987753

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.39  E-value=7.3e-13  Score=106.55  Aligned_cols=127  Identities=19%  Similarity=0.147  Sum_probs=93.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++++|||||||+|..++.+|+.   +++|+++|. +++++.+++|++.++.           ..++++...|..+.  ++
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~--l~  126 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQ-----------EHKIKLRLGPALDT--LH  126 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTC-----------TTTEEEEESCHHHH--HH
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHH--HH
Confidence            5679999999999999999974   568999998 6699999999998876           45789988554322  11


Q ss_pred             cc-----CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc------------hHHHHHHHHHhc--CCe
Q 027659          140 AV-----APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFN  200 (220)
Q Consensus       140 ~~-----~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~------------~~~~~f~~~~~~--~f~  200 (220)
                      ..     .++||+|++...  ......+++.+.++|+|||.+++.......            .....|.+.+..  .|+
T Consensus       127 ~~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~~~~~~l~~~~~~~  204 (242)
T 3r3h_A          127 SLLNEGGEHQFDFIFIDAD--KTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSGQTREIKKLNQVIKNDSRVF  204 (242)
T ss_dssp             HHHHHHCSSCEEEEEEESC--GGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCHHHHHHHHHHHHHHTCCSEE
T ss_pred             HHhhccCCCCEeEEEEcCC--hHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccChHHHHHHHHHHHHhhCCCEE
Confidence            11     478999997654  455678899999999999999985433221            124667776654  455


Q ss_pred             EEEee
Q 027659          201 VKLVP  205 (220)
Q Consensus       201 v~~v~  205 (220)
                      ...++
T Consensus       205 ~~~lp  209 (242)
T 3r3h_A          205 VSLLA  209 (242)
T ss_dssp             EEEES
T ss_pred             EEEEE
Confidence            55444

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.39  E-value=1.4e-12  Score=104.67  Aligned_cols=120  Identities=13%  Similarity=0.053  Sum_probs=87.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      +|.+|||+|||+|.+++.+|+.+.  +|+++|+ +.+++.+++|++.|++           ..+|++...|+.+..   .
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl-----------~~~I~v~~gD~l~~~---~   86 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGL-----------TEQIDVRKGNGLAVI---E   86 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTC-----------TTTEEEEECSGGGGC---C
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CceEEEEecchhhcc---C
Confidence            567999999999999999999874  5999999 5699999999999987           457899886654432   1


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeE
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v  201 (220)
                      ...+||+|+.+.+ ....+..++......|++++.+++.-.. .......++.  +.+|.+
T Consensus        87 ~~~~~D~Iviagm-Gg~lI~~IL~~~~~~L~~~~~lIlq~~~-~~~~lr~~L~--~~Gf~i  143 (244)
T 3gnl_A           87 KKDAIDTIVIAGM-GGTLIRTILEEGAAKLAGVTKLILQPNI-AAWQLREWSE--QNNWLI  143 (244)
T ss_dssp             GGGCCCEEEEEEE-CHHHHHHHHHHTGGGGTTCCEEEEEESS-CHHHHHHHHH--HHTEEE
T ss_pred             ccccccEEEEeCC-chHHHHHHHHHHHHHhCCCCEEEEEcCC-ChHHHHHHHH--HCCCEE
Confidence            1236999887655 1144677888888889988887776543 3322333333  346665

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.39  E-value=1.1e-13  Score=106.52  Aligned_cols=100  Identities=7%  Similarity=0.028  Sum_probs=75.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ...+|||||||+|.+++.++..  +++|+++|+ +.|++.+++|+..++.           ..++++  .|-   .. ..
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~-----------~~~v~~--~d~---~~-~~  111 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT-----------TIKYRF--LNK---ES-DV  111 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC-----------SSEEEE--ECC---HH-HH
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC-----------CccEEE--ecc---cc-cC
Confidence            4569999999999999999876  668999999 5699999999999876           235665  221   11 13


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +.++||+|++..+ +..+..+..+..+.+.|+|+|.++ +.+
T Consensus       112 ~~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfI-Sfp  152 (200)
T 3fzg_A          112 YKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVI-SFP  152 (200)
T ss_dssp             TTSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEE-EEE
T ss_pred             CCCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEE-EeC
Confidence            4678999999999 544555555557888899987765 455

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.39  E-value=1.8e-12  Score=104.56  Aligned_cols=102  Identities=15%  Similarity=0.060  Sum_probs=80.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++++|||||||+|..++.+|+.   +.+|+++|. +++++.+++|++.++.           ..++++...|..+.  ++
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~--l~  145 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----------DHKIDFREGPALPV--LD  145 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHH--HH
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCeEEEECCHHHH--HH
Confidence            5679999999999999999976   678999999 6699999999998765           35788887554332  11


Q ss_pred             cc------CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          140 AV------APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       140 ~~------~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ..      .++||+|++...  ......+++.+.++|+|||.+++..
T Consensus       146 ~l~~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          146 EMIKDEKNHGSYDFIFVDAD--KDNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             HHHHSGGGTTCBSEEEECSC--STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             HHHhccCCCCCEEEEEEcCc--hHHHHHHHHHHHHhCCCCeEEEEec
Confidence            11      468999997544  3457889999999999999998754

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.39  E-value=3.1e-12  Score=100.37  Aligned_cols=101  Identities=17%  Similarity=0.158  Sum_probs=79.4

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++.+|||+|||+|..+..+++.+   .+|+++|. +++++.+++++..++.            .++.+...|....  
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~------------~~v~~~~~d~~~~--  140 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY------------DNVIVIVGDGTLG--  140 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC------------TTEEEEESCGGGC--
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------------CCeEEEECCcccC--
Confidence            4467899999999999999999875   68999998 6799999999987764            3578877665322  


Q ss_pred             ccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          138 IKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .+ ...+||+|+++.+ ++..      +.+.++|+|||.+++.....
T Consensus       141 ~~-~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          141 YE-PLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             CG-GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESSS
T ss_pred             CC-CCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECCC
Confidence            11 2468999999988 5433      57888999999999987654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.39  E-value=1.7e-12  Score=110.30  Aligned_cols=106  Identities=12%  Similarity=0.164  Sum_probs=84.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ...+|||||||+|..+..+++.  +.+|+++|.+++++.+++++...+.           ..++++...|..+.. .+ .
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~-~~-~  245 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSG-----------SERIHGHGANLLDRD-VP-F  245 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTT-----------GGGEEEEECCCCSSS-CC-C
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCc-----------ccceEEEEccccccC-CC-C
Confidence            5579999999999999999985  4579999998899999999876654           357999997765532 01 1


Q ss_pred             CCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ++.||+|+++.+ ++..  ....+++.+.++|+|||.+++....
T Consensus       246 p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (363)
T 3dp7_A          246 PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETL  289 (363)
T ss_dssp             CCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeec
Confidence            368999999999 6433  3568899999999999999997753

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.39  E-value=3e-12  Score=101.45  Aligned_cols=106  Identities=19%  Similarity=0.166  Sum_probs=79.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..+.+|||+|||+|..++.+++. |  .+|+++|. +++++.+++|++.+              .++.+...|..+....
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--------------~~v~~~~~d~~~~~~~  137 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--------------RNIVPILGDATKPEEY  137 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--------------TTEEEEECCTTCGGGG
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--------------CCCEEEEccCCCcchh
Confidence            36789999999999999999975 4  58999998 66999998887654              2678888766543211


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ....++||+|++..+ .......++..+.++|+|||.+++....+
T Consensus       138 ~~~~~~~D~v~~~~~-~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  181 (227)
T 1g8a_A          138 RALVPKVDVIFEDVA-QPTQAKILIDNAEVYLKRGGYGMIAVKSR  181 (227)
T ss_dssp             TTTCCCEEEEEECCC-STTHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             hcccCCceEEEECCC-CHhHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence            222458999997655 22223455899999999999999986543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.38  E-value=1.9e-12  Score=108.07  Aligned_cols=100  Identities=23%  Similarity=0.196  Sum_probs=79.4

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCe---EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCN---VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~---v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++.+|||+|||+|..++.+++.+.+   |+++|. +++++.+++|++.++.            .++.+...|..+.. 
T Consensus        73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~------------~~v~~~~~d~~~~~-  139 (317)
T 1dl5_A           73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------------ENVIFVCGDGYYGV-  139 (317)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGCC-
T ss_pred             CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CCeEEEECChhhcc-
Confidence            346789999999999999999987554   999998 6799999999988775            35888886665422 


Q ss_pred             ccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          138 IKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                        ...++||+|++..+ .+..      +.+.++|+|||.+++....
T Consensus       140 --~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~~  177 (317)
T 1dl5_A          140 --PEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPINL  177 (317)
T ss_dssp             --GGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBCB
T ss_pred             --ccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEECC
Confidence              12468999999988 5433      5678899999999987543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.38  E-value=1.2e-12  Score=107.74  Aligned_cols=108  Identities=14%  Similarity=0.210  Sum_probs=76.1

Q ss_pred             CCCcEEEeCCcccHHHHHHH----Hh--CCeE--EEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC
Q 027659           64 KGKRVIELGAGCGVAGFGMA----LL--GCNV--ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la----~~--g~~v--~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~  134 (220)
                      ++.+|||||||+|.++..++    ..  +..|  +++|. ++|++.+++++.....           ..++.+...+ .+
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~-----------~~~v~~~~~~-~~  119 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSN-----------LENVKFAWHK-ET  119 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSS-----------CTTEEEEEEC-SC
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccC-----------CCcceEEEEe-cc
Confidence            56799999999997765332    22  3434  99998 5699999988764211           1244443211 11


Q ss_pred             CCCcc------ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          135 EDHIK------AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       135 ~~~~~------~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .+...      ..+++||+|+++.+ ++..+....++.+.++|+|||.++++....
T Consensus       120 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          120 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             HHHHHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             hhhhhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            11111      13578999999999 988999999999999999999999986544

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.38  E-value=7.6e-13  Score=105.83  Aligned_cols=148  Identities=14%  Similarity=0.080  Sum_probs=89.9

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      +++..|.+.|...       +...++++|||||||+|..+..+++.|+ +|+++|. ++|++.++++.......      
T Consensus        20 rg~~kL~~~L~~~-------~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~------   86 (232)
T 3opn_A           20 RGGLKLEKALKEF-------HLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVM------   86 (232)
T ss_dssp             TTHHHHHHHHHHT-------TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEE------
T ss_pred             CcHHHHHHHHHHc-------CCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcccccc------
Confidence            4566677766654       2345788999999999999999999986 8999999 56888766542211100      


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEe---------------
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEI---------------  182 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~---------------  182 (220)
                         ...++.+.     .....  ....||.+...-++..  +..+++.+.++|+|||.+++....               
T Consensus        87 ---~~~~~~~~-----~~~~~--~~~~~d~~~~D~v~~~--l~~~l~~i~rvLkpgG~lv~~~~p~~e~~~~~~~~~G~~  154 (232)
T 3opn_A           87 ---EQFNFRNA-----VLADF--EQGRPSFTSIDVSFIS--LDLILPPLYEILEKNGEVAALIKPQFEAGREQVGKNGII  154 (232)
T ss_dssp             ---CSCCGGGC-----CGGGC--CSCCCSEEEECCSSSC--GGGTHHHHHHHSCTTCEEEEEECHHHHSCHHHHC-CCCC
T ss_pred             ---ccceEEEe-----CHhHc--CcCCCCEEEEEEEhhh--HHHHHHHHHHhccCCCEEEEEECcccccCHHHhCcCCee
Confidence               00011110     10111  1123566543333332  488999999999999999886311               


Q ss_pred             cCch----HHHHHHHHHh-cCCeEEEeeCCCCCcc
Q 027659          183 RSTS----VHEQMLQMWK-SNFNVKLVPKAKESTM  212 (220)
Q Consensus       183 r~~~----~~~~f~~~~~-~~f~v~~v~~~~~~~~  212 (220)
                      |.+.    ..+.+.+.++ .+|++..+........
T Consensus       155 ~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g~  189 (232)
T 3opn_A          155 RDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGG  189 (232)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCBT
T ss_pred             cCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCCC
Confidence            0111    1234555554 4899988876655433

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.38  E-value=5.5e-12  Score=105.63  Aligned_cols=101  Identities=13%  Similarity=0.050  Sum_probs=83.5

Q ss_pred             CcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      .+|||+|||+|..+..+++.  +.+++++|.+++++.+++++..++.           ..++++...|+.+.     .++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~-----~~~  232 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLA-----------GERVSLVGGDMLQE-----VPS  232 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHH-----------TTSEEEEESCTTTC-----CCS
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCC-----------CCcEEEecCCCCCC-----CCC
Confidence            79999999999999999976  4589999997699999999887765           45799999776542     235


Q ss_pred             CccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          144 PFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       144 ~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      .||+|+++.+ ++..  ....+++.+.++|+|||.+++....
T Consensus       233 ~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  274 (334)
T 2ip2_A          233 NGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERT  274 (334)
T ss_dssp             SCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            7999999999 5433  3458999999999999999998643

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.38  E-value=9.2e-12  Score=105.45  Aligned_cols=103  Identities=15%  Similarity=0.156  Sum_probs=84.2

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .++.+|||+|||+|..+..+++.  +.+|+++|++++++.+++++..++.           ..++++...|..+.   + 
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~---~-  253 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGV-----------ADRMRGIAVDIYKE---S-  253 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC-----------TTTEEEEECCTTTS---C-
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCC-----------CCCEEEEeCccccC---C-
Confidence            35679999999999999999987  4589999997799999999988765           34689998776543   1 


Q ss_pred             cCCCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEEEE
Q 027659          141 VAPPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                       ...+|+|+++.+ ++...  ...+++.+.++|+|||.+++...
T Consensus       254 -~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~  296 (359)
T 1x19_A          254 -YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDM  296 (359)
T ss_dssp             -CCCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEE
T ss_pred             -CCCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence             223499999999 55444  78899999999999999988774

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.38  E-value=4.1e-12  Score=103.94  Aligned_cols=109  Identities=12%  Similarity=0.031  Sum_probs=82.2

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh--C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~--g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+|.+|||+|||+|..++.++..  + .+|+++|. +.+++.+++|++.++.            .++.+...|..+....
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~------------~~v~~~~~D~~~~~~~  149 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV------------LNTIIINADMRKYKDY  149 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCHHHHHHH
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC------------CcEEEEeCChHhcchh
Confidence            36789999999999999999874  4 57999999 5699999999998875            3788887554332110


Q ss_pred             -cccCCCccEEEEecC-CCC------------------CChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          139 -KAVAPPFDYIIGTDV-YAE------------------HLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       139 -~~~~~~fD~V~~~d~-y~~------------------~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                       ....+.||+|++..+ ...                  .....+++.+.++|+|||.++++....
T Consensus       150 ~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          150 LLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             HHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence             001568999999866 321                  345788999999999999998876543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.38  E-value=3.5e-11  Score=104.23  Aligned_cols=117  Identities=19%  Similarity=0.252  Sum_probs=85.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+.+|||+|||+|..++.+|+.+.+|+++|. +++++.+++|+..|+.            . +++...|..+..     .
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl------------~-v~~~~~d~~~~~-----~  351 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNV------------D-AEFEVASDREVS-----V  351 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC------------C-EEEEECCTTTCC-----C
T ss_pred             CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCC------------c-EEEEECChHHcC-----c
Confidence            5679999999999999999999889999999 6799999999999875            3 788886665432     2


Q ss_pred             CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEee
Q 027659          143 PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVP  205 (220)
Q Consensus       143 ~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~  205 (220)
                      .+||+|++++++. ...+.+++.+. .++|+|.+|++....   ....=+..+.  |+++.+.
T Consensus       352 ~~fD~Vv~dPPr~-g~~~~~~~~l~-~l~p~givyvsc~p~---tlarDl~~l~--y~l~~~~  407 (425)
T 2jjq_A          352 KGFDTVIVDPPRA-GLHPRLVKRLN-REKPGVIVYVSCNPE---TFARDVKMLD--YRIDEIV  407 (425)
T ss_dssp             TTCSEEEECCCTT-CSCHHHHHHHH-HHCCSEEEEEESCHH---HHHHHHHHSS--CCEEEEE
T ss_pred             cCCCEEEEcCCcc-chHHHHHHHHH-hcCCCcEEEEECChH---HHHhHHhhCe--EEEEEEE
Confidence            2899999987742 22345666665 389999999986432   2222122233  7776653

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.37  E-value=5e-12  Score=100.94  Aligned_cols=128  Identities=16%  Similarity=0.093  Sum_probs=81.4

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+|.+|||||||+|..+..+|.. +  .+|+++|. +.+++.+.+.++..              .++.+...|......
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--------------~nv~~i~~Da~~~~~  139 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--------------PNIFPLLADARFPQS  139 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--------------TTEEEEECCTTCGGG
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------------CCeEEEEcccccchh
Confidence            447889999999999999999875 3  47999998 55776554443321              367888766544322


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc-------hHHHHHHHHH-hcCCeEEEe
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMW-KSNFNVKLV  204 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-------~~~~~f~~~~-~~~f~v~~v  204 (220)
                      .....++||+|+++-.. +.....+...+.++|+|||.++++.+.+..       +.++.-.+.+ +.+|++.+.
T Consensus       140 ~~~~~~~~D~I~~d~a~-~~~~~il~~~~~~~LkpGG~lvisik~~~~d~t~~~~e~~~~~~~~L~~~gf~~~~~  213 (232)
T 3id6_C          140 YKSVVENVDVLYVDIAQ-PDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQI  213 (232)
T ss_dssp             TTTTCCCEEEEEECCCC-TTHHHHHHHHHHHHEEEEEEEEEEEC-------CCSSSSTTHHHHHHHHTTEEEEEE
T ss_pred             hhccccceEEEEecCCC-hhHHHHHHHHHHHhCCCCeEEEEEEccCCcccCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence            12234689999976434 233344556667799999999998654431       1222223334 347887554

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.37  E-value=4.8e-12  Score=107.06  Aligned_cols=103  Identities=16%  Similarity=0.084  Sum_probs=83.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ++.+|||+|||+|..+..+++.+  .+++++|++++++.+++|+..++.           ..++++...|+.+.  .   
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~--~---  246 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL-----------SDRVDVVEGDFFEP--L---  246 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC--C---
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCC-----------CCceEEEeCCCCCC--C---
Confidence            56799999999999999999875  478999997799999999988765           35799999877542  2   


Q ss_pred             CCCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +..||+|+++.+ ++...  ...+++.+.++|+|||.+++....
T Consensus       247 ~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          247 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            235999999999 55443  358999999999999999988655

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.37  E-value=1.7e-12  Score=102.81  Aligned_cols=129  Identities=14%  Similarity=0.113  Sum_probs=92.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~  138 (220)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++.           ..++++...|..+.. ..
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~~d~~~~~~~~  137 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----------EHKIDLRLKPALETLDEL  137 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCC-----------CCeEEEEEcCHHHHHHHH
Confidence            5679999999999999999975   568999999 6699999999998765           357888875543221 11


Q ss_pred             ccc--CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCch------------HHHHHHHHHhc--CCeEE
Q 027659          139 KAV--APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS------------VHEQMLQMWKS--NFNVK  202 (220)
Q Consensus       139 ~~~--~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~------------~~~~f~~~~~~--~f~v~  202 (220)
                      ...  .++||+|++...  ......+++.+.++|+|||.+++....+...            ....|.+.+..  .+...
T Consensus       138 ~~~~~~~~~D~v~~d~~--~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  215 (229)
T 2avd_A          138 LAAGEAGTFDVAVVDAD--KENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYIS  215 (229)
T ss_dssp             HHTTCTTCEEEEEECSC--STTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             HhcCCCCCccEEEECCC--HHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccCChHHHHHHHHHHHHhhCCCEEEE
Confidence            111  168999998655  4456789999999999999998854332211            23556666543  46665


Q ss_pred             Eee
Q 027659          203 LVP  205 (220)
Q Consensus       203 ~v~  205 (220)
                      .++
T Consensus       216 ~lp  218 (229)
T 2avd_A          216 LLP  218 (229)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            554

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.37  E-value=7.3e-13  Score=106.82  Aligned_cols=80  Identities=19%  Similarity=0.198  Sum_probs=62.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-C-Cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D-HI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~-~-~~  138 (220)
                      ++.+|||+|||+|..++.++..  +.+|+++|+ +++++.+++|+..++.           ..++++...|..+. . ..
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~~  133 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----------SDLIKVVKVPQKTLLMDAL  133 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTCSSTTTS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCC-----------CccEEEEEcchhhhhhhhh
Confidence            5679999999999999988865  678999999 6799999999998876           34688888764431 1 11


Q ss_pred             ccc-CCCccEEEEecCC
Q 027659          139 KAV-APPFDYIIGTDVY  154 (220)
Q Consensus       139 ~~~-~~~fD~V~~~d~y  154 (220)
                      +.. +++||+|+++++|
T Consensus       134 ~~~~~~~fD~i~~npp~  150 (254)
T 2h00_A          134 KEESEIIYDFCMCNPPF  150 (254)
T ss_dssp             TTCCSCCBSEEEECCCC
T ss_pred             hcccCCcccEEEECCCC
Confidence            111 2589999999883

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.37  E-value=6.6e-12  Score=106.95  Aligned_cols=159  Identities=14%  Similarity=0.068  Sum_probs=95.0

Q ss_pred             cCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhh
Q 027659           19 LGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEV   97 (220)
Q Consensus        19 ~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~   97 (220)
                      .|..+.+...++++.-..  -..+..+..++.+..        ...+.+|||||||+|..++.+|+.+.+|+++|. +++
T Consensus       178 ~g~~~~~~~~~~~F~Q~n--~~~~~~l~~~~~~~~--------~~~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~a  247 (369)
T 3bt7_A          178 AGKEMIYRQVENSFTQPN--AAMNIQMLEWALDVT--------KGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPS  247 (369)
T ss_dssp             TTBCCEEEEETTSCCCSB--HHHHHHHHHHHHHHT--------TTCCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHH
T ss_pred             CCceEEEEECCCCeecCC--HHHHHHHHHHHHHHh--------hcCCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHH
Confidence            344455554454332221  123456666666542        123678999999999999999987778999999 679


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-cccc------------CCCccEEEEecCCCCCChHHHHH
Q 027659           98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAV------------APPFDYIIGTDVYAEHLLEPLLQ  164 (220)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~~~------------~~~fD~V~~~d~y~~~~~~~l~~  164 (220)
                      ++.+++|++.|+.            .++++...|..+... ....            ...||+|+..+++. .....++ 
T Consensus       248 i~~a~~n~~~ng~------------~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~-g~~~~~~-  313 (369)
T 3bt7_A          248 VAAAQYNIAANHI------------DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS-GLDSETE-  313 (369)
T ss_dssp             HHHHHHHHHHTTC------------CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT-CCCHHHH-
T ss_pred             HHHHHHHHHHcCC------------CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc-ccHHHHH-
Confidence            9999999999976            478888755432210 0000            13799999887743 1223333 


Q ss_pred             HHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEeeC
Q 027659          165 TIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPK  206 (220)
Q Consensus       165 ~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~~  206 (220)
                         ++++++|.+++....  +.+...=+..+..+|+++.+.-
T Consensus       314 ---~~l~~~g~ivyvsc~--p~t~ard~~~l~~~y~~~~~~~  350 (369)
T 3bt7_A          314 ---KMVQAYPRILYISCN--PETLCKNLETLSQTHKVERLAL  350 (369)
T ss_dssp             ---HHHTTSSEEEEEESC--HHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ---HHHhCCCEEEEEECC--HHHHHHHHHHHhhCcEEEEEEe
Confidence               334455555443322  2222222233334677776643

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.36  E-value=9.5e-12  Score=93.74  Aligned_cols=119  Identities=16%  Similarity=0.142  Sum_probs=83.8

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-  137 (220)
                      ..++.+|||+|||+|..+..+++. |  .+|+++|.+++++.                      .++.+...|+.+... 
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~----------------------~~~~~~~~d~~~~~~~   77 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPI----------------------VGVDFLQGDFRDELVM   77 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCCC----------------------TTEEEEESCTTSHHHH
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccccc----------------------CcEEEEEcccccchhh
Confidence            346779999999999999999976 3  68999998544321                      256777766544310 


Q ss_pred             --cc--ccCCCccEEEEecC-CCCCCh-----------HHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeE
Q 027659          138 --IK--AVAPPFDYIIGTDV-YAEHLL-----------EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       138 --~~--~~~~~fD~V~~~d~-y~~~~~-----------~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v  201 (220)
                        .+  ...++||+|+++.+ +.....           ..+++.+.++|+|||.+++.......  ...+.+.++..|..
T Consensus        78 ~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~--~~~~~~~~~~~~~~  155 (180)
T 1ej0_A           78 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG--FDEYLREIRSLFTK  155 (180)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT--HHHHHHHHHHHEEE
T ss_pred             hhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc--HHHHHHHHHHhhhh
Confidence              00  23568999999888 555544           68899999999999999987765443  34555666555655


Q ss_pred             EEe
Q 027659          202 KLV  204 (220)
Q Consensus       202 ~~v  204 (220)
                      ..+
T Consensus       156 ~~~  158 (180)
T 1ej0_A          156 VKV  158 (180)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            443

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.36  E-value=3.2e-12  Score=107.84  Aligned_cols=105  Identities=12%  Similarity=0.038  Sum_probs=85.5

Q ss_pred             CCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      +.+|||+|||+|..+..+++.  +.+++++|.+++++.+++++..++.           ..++++...|+.+...  ..+
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~~v~~~~~d~~~~~~--~~~  246 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDL-----------GGRVEFFEKNLLDARN--FEG  246 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTC-----------GGGEEEEECCTTCGGG--GTT
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCC-----------CCceEEEeCCcccCcc--cCC
Confidence            789999999999999999987  4579999998899999999887765           3579999977654321  134


Q ss_pred             CCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          143 PPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +.||+|+++.+ ++..  ....+++.+.++|+|||.+++....
T Consensus       247 ~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  289 (352)
T 3mcz_A          247 GAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMT  289 (352)
T ss_dssp             CCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            56999999999 5443  4588999999999999999998753

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.36  E-value=3.7e-12  Score=101.60  Aligned_cols=115  Identities=17%  Similarity=0.182  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      ...+...+.+..       ...++.+|||+|||+|..+..+++.+ .+|+++|. +++++.+++|+..++.         
T Consensus        76 ~~~~~~~~~~~l-------~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~---------  139 (235)
T 1jg1_A           76 APHMVAIMLEIA-------NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV---------  139 (235)
T ss_dssp             CHHHHHHHHHHH-------TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC---------
T ss_pred             cHHHHHHHHHhc-------CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC---------
Confidence            444555554442       33467799999999999999999876 78999998 6799999999988764         


Q ss_pred             CCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       120 ~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                         .++.+...|...  ..+ ...+||+|+++.+ .+..      +.+.++|+|||.+++......
T Consensus       140 ---~~v~~~~~d~~~--~~~-~~~~fD~Ii~~~~~~~~~------~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          140 ---KNVHVILGDGSK--GFP-PKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             ---CSEEEEESCGGG--CCG-GGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEECSSS
T ss_pred             ---CCcEEEECCccc--CCC-CCCCccEEEECCcHHHHH------HHHHHhcCCCcEEEEEEecCC
Confidence               357887766521  121 1346999999887 4322      467889999999999887543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.36  E-value=2.9e-12  Score=102.44  Aligned_cols=129  Identities=15%  Similarity=0.086  Sum_probs=91.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~  138 (220)
                      ++++|||||||+|..++.+++.   +.+|+++|. +++++.+++++..++.           ..++.+...|..+... .
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~-----------~~~v~~~~~d~~~~~~~~  128 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGL-----------ENKIFLKLGSALETLQVL  128 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCCEEEEECCHHHHHHHH
Confidence            5679999999999999999987   568999998 6799999999988765           2357887755432100 1


Q ss_pred             c-----------cc-C-CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc------------hHHHHHHH
Q 027659          139 K-----------AV-A-PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQ  193 (220)
Q Consensus       139 ~-----------~~-~-~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~------------~~~~~f~~  193 (220)
                      .           .. . ++||+|++...  ......+++.+.++|+|||.+++.......            .....|.+
T Consensus       129 ~~~~~~~~~~~~f~~~~~~fD~I~~~~~--~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~~~~~~~~~~~~  206 (239)
T 2hnk_A          129 IDSKSAPSWASDFAFGPSSIDLFFLDAD--KENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNE  206 (239)
T ss_dssp             HHCSSCCGGGTTTCCSTTCEEEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCCHHHHHHHHHHH
T ss_pred             HhhcccccccccccCCCCCcCEEEEeCC--HHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCccccchHHHHHHHHHH
Confidence            0           01 2 68999997644  455678899999999999999986522211            12355666


Q ss_pred             HHhc--CCeEEEee
Q 027659          194 MWKS--NFNVKLVP  205 (220)
Q Consensus       194 ~~~~--~f~v~~v~  205 (220)
                      .+..  .|.+..++
T Consensus       207 ~~~~~~~~~~~~~p  220 (239)
T 2hnk_A          207 LVYNDSLVDVSLVP  220 (239)
T ss_dssp             HHHHCTTEEEEEEC
T ss_pred             HHhhCCCeEEEEEE
Confidence            5543  46665554

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.36  E-value=5.1e-12  Score=101.59  Aligned_cols=114  Identities=7%  Similarity=-0.050  Sum_probs=80.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||+|||+|..++.+|+.++  +|+++|+ +.+++.+++|++.+.......    ....++.+...|..+......
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~----~~~~nv~~~~~D~~~~l~~~~  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASK----HGFQNINVLRGNAMKFLPNFF  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CC----STTTTEEEEECCTTSCGGGTS
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccc----cCCCcEEEEeccHHHHHHHhc
Confidence            567899999999999999998863  6999998 569999999998873211000    002478888876654211112


Q ss_pred             cCCCccEEEEecC--CCCC-------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          141 VAPPFDYIIGTDV--YAEH-------LLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~-------~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ....+|.|+...+  +...       ....+++.+.++|+|||.+++...
T Consensus       125 ~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td  174 (246)
T 2vdv_E          125 EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD  174 (246)
T ss_dssp             CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence            3568999987655  2111       126899999999999999998654

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.36  E-value=6.1e-12  Score=99.74  Aligned_cols=100  Identities=14%  Similarity=0.150  Sum_probs=78.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||+|||+|..+..++..+.+|+++|. +++++.+++++..++              ++.+...|..+.  .+ 
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~--------------~v~~~~~d~~~~--~~-  130 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN--------------NIKLILGDGTLG--YE-  130 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS--------------SEEEEESCGGGC--CG-
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC--------------CeEEEECCcccc--cc-
Confidence            346789999999999999999999889999998 669999998876431              578887666442  11 


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ..++||+|+++.+ ++..      ..+.++|+|||.+++......
T Consensus       131 ~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~~  169 (231)
T 1vbf_A          131 EEKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVGR  169 (231)
T ss_dssp             GGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSSS
T ss_pred             cCCCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCCC
Confidence            2468999999988 5432      467889999999999876543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.35  E-value=2.7e-12  Score=101.97  Aligned_cols=95  Identities=7%  Similarity=0.060  Sum_probs=75.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||+|||+|..+..+++.+.+|+++|. +++++.++++.                 .++.+...|..+.   +. .
T Consensus        40 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~-----------------~~~~~~~~d~~~~---~~-~   98 (239)
T 3bxo_A           40 EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL-----------------PDATLHQGDMRDF---RL-G   98 (239)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC-----------------TTCEEEECCTTTC---CC-S
T ss_pred             CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC-----------------CCCEEEECCHHHc---cc-C
Confidence            5679999999999999999998889999999 66998887752                 2467777665543   22 5


Q ss_pred             CCccEEEE-ecC-CCC---CChHHHHHHHHHhhCCCcEEEEE
Q 027659          143 PPFDYIIG-TDV-YAE---HLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       143 ~~fD~V~~-~d~-y~~---~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ++||+|++ .++ .+.   .....+++.+.++|+|||.+++.
T Consensus        99 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (239)
T 3bxo_A           99 RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVE  140 (239)
T ss_dssp             SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            68999996 445 333   45678999999999999999986

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.35  E-value=3.9e-12  Score=101.84  Aligned_cols=124  Identities=8%  Similarity=0.043  Sum_probs=85.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc-
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~-  139 (220)
                      ++.+|||||||+|..++.+|+.  +..|+++|+ +.+++.+++++........      ....++.+...|..+.  ++ 
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~------~~~~nv~~~~~d~~~~--l~~  117 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPA------GGFQNIACLRSNAMKH--LPN  117 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTT------CCCTTEEEEECCTTTC--HHH
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHh------cCCCeEEEEECcHHHh--hhh
Confidence            4568999999999999999987  457999999 5699999998865221000      0135788988766442  22 


Q ss_pred             -ccCCCccEEEEecC--CCCC-------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc
Q 027659          140 -AVAPPFDYIIGTDV--YAEH-------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS  197 (220)
Q Consensus       140 -~~~~~fD~V~~~d~--y~~~-------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~  197 (220)
                       ...+.||.|+.+-+  +...       ....+++.+.++|+|||.+++.....  .......+.+..
T Consensus       118 ~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~--~~~~~~~~~l~~  183 (235)
T 3ckk_A          118 FFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVL--ELHDWMCTHFEE  183 (235)
T ss_dssp             HCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCH--HHHHHHHHHHHT
T ss_pred             hCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCH--HHHHHHHHHHHH
Confidence             23578999987654  3211       12579999999999999999876542  223444555544

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.35  E-value=1.1e-12  Score=103.32  Aligned_cols=106  Identities=11%  Similarity=0.091  Sum_probs=74.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++.+|||||||+|..+..+++.  +.+|+++|+ +++++.+.+++..+...        ....++.+...|..+.   +.
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~--------~~~~~v~~~~~d~~~l---~~   95 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAK--------GGLPNLLYLWATAERL---PP   95 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGG--------TCCTTEEEEECCSTTC---CS
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhh--------cCCCceEEEecchhhC---CC
Confidence            5679999999999999999988  568999999 56888665554432210        0124788888766553   22


Q ss_pred             cCCCccEEEEecCC------CCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          141 VAPPFDYIIGTDVY------AEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       141 ~~~~fD~V~~~d~y------~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ..+. |.|+..-.+      +......+++.+.++|+|||.+++...
T Consensus        96 ~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  141 (218)
T 3mq2_A           96 LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALN  141 (218)
T ss_dssp             CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEec
Confidence            2334 766633222      223347889999999999999999764

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.34  E-value=4e-12  Score=110.04  Aligned_cols=108  Identities=19%  Similarity=0.276  Sum_probs=78.6

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-CC-eEEEecc-hhhHHHH-------HHHHHHhhhhhccCCCCCCCCCceEEEEe-
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLL-------KRNVEWNTSRISQMNPGSDLLGSIQAVEL-  130 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g~-~v~~~D~-~~~l~~~-------~~n~~~n~~~~~~~~~~~~~~~~v~~~~l-  130 (220)
                      ...+.+|||||||+|.+++.+|+. ++ +|+++|+ +++++.+       ++|+..+++.          ..++++... 
T Consensus       240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~----------~~nV~~i~gD  309 (433)
T 1u2z_A          240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR----------LNNVEFSLKK  309 (433)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC----------CCCEEEEESS
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC----------CCceEEEEcC
Confidence            347789999999999999999985 54 6999998 5688888       7777766530          147777763 


Q ss_pred             eeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          131 DWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       131 dw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ++.....+......||+|+++.+ +. ......++.+.+.|+|||.+++..
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn~~l~~-~d~~~~L~el~r~LKpGG~lVi~d  359 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVNNFLFD-EDLNKKVEKILQTAKVGCKIISLK  359 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTTCC-HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             ccccccccccccCCCCEEEEeCcccc-ccHHHHHHHHHHhCCCCeEEEEee
Confidence            22111011112358999998877 54 456777889999999999998864

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.34  E-value=3.6e-12  Score=102.07  Aligned_cols=98  Identities=13%  Similarity=0.126  Sum_probs=73.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh------CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ++.+|||||||+|..++.+|+.      +++|+++|+ +++++.++      +.           ..++++...|+.+..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~-----------~~~v~~~~gD~~~~~  143 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SD-----------MENITLHQGDCSDLT  143 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GG-----------CTTEEEEECCSSCSG
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------cc-----------CCceEEEECcchhHH
Confidence            4579999999999999999986      678999998 56777665      11           247899887766531


Q ss_pred             CccccC-CCccEEEEecCCCCCChHHHHHHHHH-hhCCCcEEEEEE
Q 027659          137 HIKAVA-PPFDYIIGTDVYAEHLLEPLLQTIFA-LSGPKTTILLGY  180 (220)
Q Consensus       137 ~~~~~~-~~fD~V~~~d~y~~~~~~~l~~~l~~-~l~~~g~~~i~~  180 (220)
                      .++... .+||+|++...+  .....++..+.+ +|+|||.+++..
T Consensus       144 ~l~~~~~~~fD~I~~d~~~--~~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          144 TFEHLREMAHPLIFIDNAH--ANTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             GGGGGSSSCSSEEEEESSC--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             HHHhhccCCCCEEEECCch--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence            122223 379999976553  367888898996 999999999853

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.33  E-value=1.6e-11  Score=100.08  Aligned_cols=115  Identities=17%  Similarity=0.166  Sum_probs=86.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHh-h-hhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWN-T-SRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n-~-~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ...+.+|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.+ + .           ..++.+...|..+.
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~-----------~~~v~~~~~d~~~~  165 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP-----------PDNWRLVVSDLADS  165 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC-----------CTTEEEECSCGGGC
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCC-----------CCcEEEEECchHhc
Confidence            346789999999999999999985   568999999 67999999999887 4 2           24788887665443


Q ss_pred             CCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh
Q 027659          136 DHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  196 (220)
Q Consensus       136 ~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~  196 (220)
                         +...+.||+|+++..    ....+++.+.++|+|||.+++..+...  ....+.+.++
T Consensus       166 ---~~~~~~~D~v~~~~~----~~~~~l~~~~~~L~pgG~l~~~~~~~~--~~~~~~~~l~  217 (280)
T 1i9g_A          166 ---ELPDGSVDRAVLDML----APWEVLDAVSRLLVAGGVLMVYVATVT--QLSRIVEALR  217 (280)
T ss_dssp             ---CCCTTCEEEEEEESS----CGGGGHHHHHHHEEEEEEEEEEESSHH--HHHHHHHHHH
T ss_pred             ---CCCCCceeEEEECCc----CHHHHHHHHHHhCCCCCEEEEEeCCHH--HHHHHHHHHH
Confidence               223568999998543    344788999999999999999776532  2344455554

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.33  E-value=1.4e-11  Score=112.98  Aligned_cols=110  Identities=11%  Similarity=0.028  Sum_probs=83.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .+.+|||||||+|..++.+++.+   .+|+++|+ +++++.+++++....... .     ....++++...|..+   ++
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAk-r-----~gl~nVefiqGDa~d---Lp  791 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE-A-----CNVKSATLYDGSILE---FD  791 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTT-C-----SSCSEEEEEESCTTS---CC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchh-h-----cCCCceEEEECchHh---CC
Confidence            67899999999999999999987   68999999 569999998776532100 0     012478888865544   34


Q ss_pred             ccCCCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          140 AVAPPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ...+.||+|+++.+ .+...  ...+++.+.++|+|| .++++.+.+
T Consensus       792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~  837 (950)
T 3htx_A          792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNY  837 (950)
T ss_dssp             TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred             cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence            44678999999999 55443  346899999999999 777776554

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.33  E-value=8.8e-13  Score=118.36  Aligned_cols=104  Identities=16%  Similarity=0.108  Sum_probs=74.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||||||+|+++..+|++|++|+++|. +.+++.|+..+..++.            .++++...+..+... ...+
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~------------~~~~~~~~~~~~~~~-~~~~  132 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD------------FAAEFRVGRIEEVIA-ALEE  132 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT------------SEEEEEECCHHHHHH-HCCT
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC------------CceEEEECCHHHHhh-hccC
Confidence            5679999999999999999999999999999 5699999998887653            368888854433210 1235


Q ss_pred             CCccEEEEecC-CCCCChHHHHH--HHHHhhCCCcEEEEEE
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQ--TIFALSGPKTTILLGY  180 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~--~l~~~l~~~g~~~i~~  180 (220)
                      ++||+|+|..+ +|..+...+..  .+.+.+++++..++..
T Consensus       133 ~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          133 GEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             TSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEE
T ss_pred             CCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEE
Confidence            68999999999 77554433322  2333456666555443

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.32  E-value=2.1e-12  Score=102.72  Aligned_cols=101  Identities=14%  Similarity=0.092  Sum_probs=69.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHH--hCCeEEEecch-h-hHHHH---HHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMAL--LGCNVITTDQI-E-VLPLL---KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~--~g~~v~~~D~~-~-~l~~~---~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .+.+|||||||+|..++.+|+  .+++|+++|.+ + +++.+   ++++..++.            .++.+...|..+..
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~------------~~v~~~~~d~~~l~   91 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL------------SNVVFVIAAAESLP   91 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC------------SSEEEECCBTTBCC
T ss_pred             CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC------------CCeEEEEcCHHHhh
Confidence            567899999999999999995  45679999984 6 66665   666555443            46888886665431


Q ss_pred             CccccCCCccEEEEecCCCC------CChHHHHHHHHHhhCCCcEEEE
Q 027659          137 HIKAVAPPFDYIIGTDVYAE------HLLEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~------~~~~~l~~~l~~~l~~~g~~~i  178 (220)
                      .  .....+|.|.++.++..      .....+++.+.++|+|||.+++
T Consensus        92 ~--~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           92 F--ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             G--GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             h--hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            1  01234455554433111      1235688999999999999998

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.32  E-value=4.3e-12  Score=101.60  Aligned_cols=104  Identities=13%  Similarity=0.030  Sum_probs=80.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~  138 (220)
                      ++++|||||||+|..++.+|+.   +.+|+++|. +++++.+++|++.++.           ..++++...|+.+.. ..
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~gda~~~l~~l  138 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGV-----------EHKINFIESDAMLALDNL  138 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            5679999999999999999976   578999999 6799999999998765           346888886553321 11


Q ss_pred             cc---cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          139 KA---VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       139 ~~---~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ..   ..++||+|++...  ......+++.+.++|+|||.+++..
T Consensus       139 ~~~~~~~~~fD~I~~d~~--~~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          139 LQGQESEGSYDFGFVDAD--KPNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             HHSTTCTTCEEEEEECSC--GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HhccCCCCCcCEEEECCc--hHHHHHHHHHHHHhcCCCeEEEEec
Confidence            00   1468999996533  4457889999999999999988754

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.31  E-value=5.6e-12  Score=99.76  Aligned_cols=107  Identities=17%  Similarity=0.214  Sum_probs=79.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC-------eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC-------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~-------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~  134 (220)
                      .++.+|||+|||+|..+..+++...       +|+++|. +++++.+++|+..++....       ...++.+...|..+
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~  151 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL-------KIDNFKIIHKNIYQ  151 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGG-------SSTTEEEEECCGGG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCcccc-------ccCCEEEEECChHh
Confidence            3678999999999999999998754       8999998 6799999999987752000       01468888866544


Q ss_pred             CCC-ccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          135 EDH-IKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       135 ~~~-~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ... ......+||+|+++.+ .+      +++.+.++|+|||.+++....
T Consensus       152 ~~~~~~~~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          152 VNEEEKKELGLFDAIHVGASASE------LPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             CCHHHHHHHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEEEEEE
T ss_pred             cccccCccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEEEcc
Confidence            210 0012468999999887 43      347778899999999998875

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.31  E-value=2e-11  Score=94.61  Aligned_cols=133  Identities=17%  Similarity=0.228  Sum_probs=88.9

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      ++.-|.+.+.+..       ...++.+|||||||+|..++.+++.+++|+++|+.++.          .           
T Consensus         9 a~~KL~ei~~~~~-------~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~----------~-----------   60 (191)
T 3dou_A            9 AAFKLEFLLDRYR-------VVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME----------E-----------   60 (191)
T ss_dssp             HHHHHHHHHHHHC-------CSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC----------C-----------
T ss_pred             HHHHHHHHHHHcC-------CCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc----------c-----------
Confidence            4555666555431       23367899999999999999999988899999985420          0           


Q ss_pred             CCCceEEEEeeeCCCCCcc----ccC----CCccEEEEecC-CCCC-----------ChHHHHHHHHHhhCCCcEEEEEE
Q 027659          121 LLGSIQAVELDWGNEDHIK----AVA----PPFDYIIGTDV-YAEH-----------LLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~----~~~----~~fD~V~~~d~-y~~~-----------~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                       ..++.+...|..+.....    ...    ++||+|+++.. ....           ....+++...++|+|||.+++..
T Consensus        61 -~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~  139 (191)
T 3dou_A           61 -IAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQ  139 (191)
T ss_dssp             -CTTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CCCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence             136788887766543110    011    48999999764 2211           12456777788999999998765


Q ss_pred             EecCchHHHHHHHHHhcCCeEEEe
Q 027659          181 EIRSTSVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       181 ~~r~~~~~~~f~~~~~~~f~v~~v  204 (220)
                      ... . ....+.+.++..|.-..+
T Consensus       140 ~~~-~-~~~~~~~~l~~~F~~v~~  161 (191)
T 3dou_A          140 FQG-D-MTNDFIAIWRKNFSSYKI  161 (191)
T ss_dssp             ECS-T-HHHHHHHHHGGGEEEEEE
T ss_pred             cCC-C-CHHHHHHHHHHhcCEEEE
Confidence            432 2 246777778877755444

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.30  E-value=4.8e-12  Score=100.93  Aligned_cols=105  Identities=17%  Similarity=0.138  Sum_probs=80.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-CCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~-~~~  138 (220)
                      ++++|||+|||+|..++.+++.   +.+|+++|. +++++.+++|++.++.           ..++++...|+.+. ..+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~-----------~~~i~~~~~d~~~~l~~l  140 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGV-----------AEKISLRLGPALATLEQL  140 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----------CCcEEEEEcCHHHHHHHH
Confidence            5679999999999999999975   568999998 6799999999988765           34688887554321 111


Q ss_pred             cccC--CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          139 KAVA--PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       139 ~~~~--~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +...  ++||+|++...  ......+++.+.++|+|||.+++...
T Consensus       141 ~~~~~~~~fD~V~~d~~--~~~~~~~l~~~~~~LkpgG~lv~~~~  183 (232)
T 3cbg_A          141 TQGKPLPEFDLIFIDAD--KRNYPRYYEIGLNLLRRGGLMVIDNV  183 (232)
T ss_dssp             HTSSSCCCEEEEEECSC--GGGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred             HhcCCCCCcCEEEECCC--HHHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            1112  68999997644  44577889999999999999988643

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.30  E-value=2.6e-11  Score=103.80  Aligned_cols=148  Identities=16%  Similarity=0.100  Sum_probs=102.1

Q ss_pred             eEEEeecCeEEEEEeCCCCccccccccc-------hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh
Q 027659           13 VINLEVLGHQLQFSQDPNSKHLGTTVWD-------ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (220)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~-------~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~   85 (220)
                      .+.+.+.....++.-+.++.+.-.+-|.       -...|+..|....       ....+.+|||+|||+|.+.+.+|..
T Consensus       144 ~i~~~i~~~~~~~~lD~sG~~l~krgyr~~~~~Apl~e~lAa~ll~~~-------~~~~~~~vlDp~CGSGt~lieaa~~  216 (385)
T 3ldu_A          144 PIFVFIHKDKVTISIDTTGDALHKRGYREKANKAPIRETLAAGLIYLT-------PWKAGRVLVDPMCGSGTILIEAAMI  216 (385)
T ss_dssp             CEEEEEETTEEEEEEESCCSCTTCCSCCCC--CCCCCHHHHHHHHHTS-------CCCTTSCEEETTCTTCHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEecCCChhhhcccccCCCCCCCcHHHHHHHHHhh-------CCCCCCeEEEcCCCCCHHHHHHHHH
Confidence            3566677777777776643221111222       1334666666542       3336789999999999999999876


Q ss_pred             C----------------------------------------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 027659           86 G----------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (220)
Q Consensus        86 g----------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (220)
                      +                                        .+|+++|+ +.+++.++.|+..++.           ..+
T Consensus       217 ~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na~~~gl-----------~~~  285 (385)
T 3ldu_A          217 GINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENAEIAGV-----------DEY  285 (385)
T ss_dssp             HTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHHHHHTC-----------GGG
T ss_pred             HhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHHHHcCC-----------CCc
Confidence            4                                        35999999 6799999999999986           347


Q ss_pred             eEEEEeeeCCCCCccccCCCccEEEEecCCCCC-----ChHHHHHHHHHhhCC--CcEEEEEEEe
Q 027659          125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH-----LLEPLLQTIFALSGP--KTTILLGYEI  182 (220)
Q Consensus       125 v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~-----~~~~l~~~l~~~l~~--~g~~~i~~~~  182 (220)
                      +++...|+.+..    .+.+||+|+++++|...     ....+.+.+.+.|++  |+.+++....
T Consensus       286 i~~~~~D~~~l~----~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  346 (385)
T 3ldu_A          286 IEFNVGDATQFK----SEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITSY  346 (385)
T ss_dssp             EEEEECCGGGCC----CSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEESC
T ss_pred             eEEEECChhhcC----cCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEECC
Confidence            889887765542    24589999999996533     344566666666665  7888776553

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.30  E-value=1.5e-11  Score=96.35  Aligned_cols=109  Identities=10%  Similarity=0.024  Sum_probs=79.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      ++.+|||+|||+|..+..+   +.+|+++|.++.          +                +.+...|..+   .+...+
T Consensus        67 ~~~~vLDiG~G~G~~~~~l---~~~v~~~D~s~~----------~----------------~~~~~~d~~~---~~~~~~  114 (215)
T 2zfu_A           67 ASLVVADFGCGDCRLASSI---RNPVHCFDLASL----------D----------------PRVTVCDMAQ---VPLEDE  114 (215)
T ss_dssp             TTSCEEEETCTTCHHHHHC---CSCEEEEESSCS----------S----------------TTEEESCTTS---CSCCTT
T ss_pred             CCCeEEEECCcCCHHHHHh---hccEEEEeCCCC----------C----------------ceEEEecccc---CCCCCC
Confidence            5679999999999988877   368999998542          1                2344444333   333457


Q ss_pred             CccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-cCCeEEEee
Q 027659          144 PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       144 ~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~v~~v~  205 (220)
                      +||+|+++.+ ++ .....+++.+.++|+|||.++++.........+.+.+.++ .+|++..+.
T Consensus       115 ~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~Gf~~~~~~  177 (215)
T 2zfu_A          115 SVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLGFKIVSKD  177 (215)
T ss_dssp             CEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTTEEEEEEE
T ss_pred             CEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCCCEEEEEe
Confidence            8999999999 64 7789999999999999999999876543323456666665 478876654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.30  E-value=4.9e-11  Score=102.37  Aligned_cols=148  Identities=14%  Similarity=0.147  Sum_probs=101.9

Q ss_pred             eEEEeecCeEEEEEeCCCCccccccccc-------hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh
Q 027659           13 VINLEVLGHQLQFSQDPNSKHLGTTVWD-------ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (220)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~-------~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~   85 (220)
                      .+.+.+....+.+.-+.++.+.-.+-|+       -...|+..|....       ....+..|||++||+|.+.+.+|..
T Consensus       150 ~i~v~l~~~~~~~~ld~sg~~L~krgyr~~~~~Apl~e~lAa~ll~l~-------~~~~~~~vlDp~CGSGt~~ieaa~~  222 (393)
T 3k0b_A          150 KLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETMAAALVLLT-------SWHPDRPFYDPVCGSGTIPIEAALI  222 (393)
T ss_dssp             CEEEEEETTEEEEEEESSSSCTTCCSTTTTSCSCSCCHHHHHHHHHHS-------CCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEecCCCcccccccccCCCCCCCcHHHHHHHHHHh-------CCCCCCeEEEcCCCCCHHHHHHHHH
Confidence            4566777777888777644322222333       1334555555432       2335678999999999999999975


Q ss_pred             CC----------------------------------------eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 027659           86 GC----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (220)
Q Consensus        86 g~----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (220)
                      +.                                        +|+++|+ +.+++.++.|+..+++           ..+
T Consensus       223 ~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na~~~gl-----------~~~  291 (393)
T 3k0b_A          223 GQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGL-----------GDL  291 (393)
T ss_dssp             HTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTC-----------TTC
T ss_pred             hcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHHHHcCC-----------CCc
Confidence            43                                        4999999 6799999999999886           346


Q ss_pred             eEEEEeeeCCCCCccccCCCccEEEEecCCCCC-----ChHHHHHHHHHhhCC--CcEEEEEEEe
Q 027659          125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH-----LLEPLLQTIFALSGP--KTTILLGYEI  182 (220)
Q Consensus       125 v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~-----~~~~l~~~l~~~l~~--~g~~~i~~~~  182 (220)
                      +++...|+.+..    ....||+|+++++|...     ....+.+.+.+.+++  |+.+++....
T Consensus       292 I~~~~~D~~~~~----~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  352 (393)
T 3k0b_A          292 ITFRQLQVADFQ----TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTSY  352 (393)
T ss_dssp             SEEEECCGGGCC----CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEECC
T ss_pred             eEEEECChHhCC----CCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            888887765542    23589999999997543     244555656555654  8888876653

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.30  E-value=5.7e-11  Score=92.16  Aligned_cols=94  Identities=22%  Similarity=0.245  Sum_probs=68.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .++.+|||+|||+|..++.+++.+. +|+++|+ +++++.+++|+.                 ++++...|..+.     
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----------------~~~~~~~d~~~~-----  107 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----------------GVNFMVADVSEI-----  107 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------------TSEEEECCGGGC-----
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------------CCEEEECcHHHC-----
Confidence            4678999999999999999998876 5999999 669999988754                 357777555432     


Q ss_pred             cCCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          141 VAPPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       +++||+|+++++ ++..  ....+++.+.+.+   |.++++...
T Consensus       108 -~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~  148 (200)
T 1ne2_A          108 -SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS---MWIYSIGNA  148 (200)
T ss_dssp             -CCCEEEEEECCCC-------CHHHHHHHHHHE---EEEEEEEEG
T ss_pred             -CCCeeEEEECCCchhccCchhHHHHHHHHHhc---CcEEEEEcC
Confidence             268999999998 4332  2346777777777   556666643

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.30  E-value=6.6e-12  Score=105.05  Aligned_cols=126  Identities=15%  Similarity=0.106  Sum_probs=90.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHH--hhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++|||||||+|..+..+++.  +.+|+++|+ +++++.+++|+..  ++..          ..++++...|+.+.  .
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~----------~~~v~~~~~D~~~~--l  183 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYE----------DKRVNVFIEDASKF--L  183 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGG----------STTEEEEESCHHHH--H
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC----------CCcEEEEEccHHHH--H
Confidence            4579999999999999999976  467999999 6799999998765  2221          24788888665432  1


Q ss_pred             cccCCCccEEEEecC--CCC-CC-h-HHHHHHHHHhhCCCcEEEEEEEec--CchHHHHHHHHHhcCCeE
Q 027659          139 KAVAPPFDYIIGTDV--YAE-HL-L-EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~--y~~-~~-~-~~l~~~l~~~l~~~g~~~i~~~~r--~~~~~~~f~~~~~~~f~v  201 (220)
                      ....++||+|+++..  +.. .. . ..+++.+.++|+|||.+++.....  .......+.+.+++.|..
T Consensus       184 ~~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  253 (321)
T 2pt6_A          184 ENVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKK  253 (321)
T ss_dssp             HHCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             hhcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCCC
Confidence            123568999998764  221 11 2 789999999999999999865432  223456666777776643

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.30  E-value=9.1e-11  Score=100.34  Aligned_cols=148  Identities=11%  Similarity=0.096  Sum_probs=102.8

Q ss_pred             eEEEeecCeEEEEEeCCCCccccccccc-------hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh
Q 027659           13 VINLEVLGHQLQFSQDPNSKHLGTTVWD-------ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (220)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~-------~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~   85 (220)
                      .+.+.+.....++.-+.++.+.-.+-|.       -...||..|....       ....+..+||.+||+|.+.+.+|..
T Consensus       143 ~i~v~~~~~~~~~~ld~sg~~LhkRgyr~~~~~Apl~e~LAaall~l~-------~~~~~~~llDp~CGSGt~lIEAa~~  215 (384)
T 3ldg_A          143 KIEISLLKDQARVMIDTTGPSLFKRGYRTEKGGAPIKENMAAAIILLS-------NWFPDKPFVDPTCGSGTFCIEAAMI  215 (384)
T ss_dssp             EEEEEEETTEEEEEEESSSSCTTCCSCCCC---CCCCHHHHHHHHHHT-------TCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEeccCCcccccCcccCCCCCCCcHHHHHHHHHHh-------CCCCCCeEEEeCCcCCHHHHHHHHH
Confidence            4566677777777776543322111221       1345666655442       2335778999999999999999965


Q ss_pred             CC----------------------------------------eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 027659           86 GC----------------------------------------NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (220)
Q Consensus        86 g~----------------------------------------~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (220)
                      +.                                        +|+++|+ +.+++.+++|+..+++           ...
T Consensus       216 a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na~~~gl-----------~~~  284 (384)
T 3ldg_A          216 GMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNAREVGL-----------EDV  284 (384)
T ss_dssp             HTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHHHHTTC-----------TTT
T ss_pred             hcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHHHHcCC-----------CCc
Confidence            43                                        4999999 6699999999999987           356


Q ss_pred             eEEEEeeeCCCCCccccCCCccEEEEecCCCCC-----ChHHHHHHHHHhhCC--CcEEEEEEEe
Q 027659          125 IQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH-----LLEPLLQTIFALSGP--KTTILLGYEI  182 (220)
Q Consensus       125 v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~-----~~~~l~~~l~~~l~~--~g~~~i~~~~  182 (220)
                      +++...|..+..    ....||+|+++++|...     ....+.+.+.+.|++  |+.+++....
T Consensus       285 I~~~~~D~~~l~----~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~  345 (384)
T 3ldg_A          285 VKLKQMRLQDFK----TNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTND  345 (384)
T ss_dssp             EEEEECCGGGCC----CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEESC
T ss_pred             eEEEECChHHCC----ccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEECC
Confidence            888887665542    23589999999996543     345666666667765  8888887653

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.30  E-value=1.4e-12  Score=112.48  Aligned_cols=101  Identities=12%  Similarity=0.144  Sum_probs=77.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeC--CCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG--NEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~--~~~~~~  139 (220)
                      .++.+|||+|||+|..+..+++.|.+|+++|. +++++.++++    +.               ......+.  ....++
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~---------------~~~~~~~~~~~~~~l~  166 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GI---------------RVRTDFFEKATADDVR  166 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TC---------------CEECSCCSHHHHHHHH
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CC---------------CcceeeechhhHhhcc
Confidence            36789999999999999999999999999999 5688877755    21               11110000  011122


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ...++||+|+++.+ ++..+...+++.+.++|+|||.+++..+.
T Consensus       167 ~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          167 RTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            23578999999999 88789999999999999999999998764

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.29  E-value=1.8e-11  Score=100.78  Aligned_cols=146  Identities=15%  Similarity=0.095  Sum_probs=91.7

Q ss_pred             ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccC
Q 027659           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (220)
Q Consensus        38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (220)
                      +-+++.-|.+.|...       .....|++|||+|||||.++..+++.|+ +|+++|. +.|++.+.++   +       
T Consensus        66 vsrg~~Kl~~~l~~~-------~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~---~-------  128 (291)
T 3hp7_A           66 VSRGGLKLEKALAVF-------NLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQ---D-------  128 (291)
T ss_dssp             SSTTHHHHHHHHHHT-------TCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHT---C-------
T ss_pred             ccchHHHHHHHHHhc-------CCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---C-------
Confidence            345577777777654       2345788999999999999999999886 7999999 5688764332   1       


Q ss_pred             CCCCCCCCceEEE-EeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEe------------
Q 027659          116 NPGSDLLGSIQAV-ELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEI------------  182 (220)
Q Consensus       116 ~~~~~~~~~v~~~-~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~------------  182 (220)
                             .++... ..+.........+...||+|++.-.+.  .+..++..+.++|+|||.+++..+.            
T Consensus       129 -------~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d~sf~--sl~~vL~e~~rvLkpGG~lv~lvkPqfe~~~~~~~~~  199 (291)
T 3hp7_A          129 -------DRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFI--SLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKN  199 (291)
T ss_dssp             -------TTEEEECSCCGGGCCGGGCTTCCCSEEEECCSSS--CGGGTHHHHHHHSCTTCEEEEEECGGGTSCGGGCC-C
T ss_pred             -------cccceecccCceecchhhCCCCCCCEEEEEeeHh--hHHHHHHHHHHHcCcCCEEEEEECcccccChhhcCCC
Confidence                   122211 111111110001223599998643354  4688999999999999999887321            


Q ss_pred             ---cCch----HHHHHHHHHh-cCCeEEEeeCCCC
Q 027659          183 ---RSTS----VHEQMLQMWK-SNFNVKLVPKAKE  209 (220)
Q Consensus       183 ---r~~~----~~~~f~~~~~-~~f~v~~v~~~~~  209 (220)
                         |.+.    ..+.+.+.+. .+|.+..+.....
T Consensus       200 G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~~~spi  234 (291)
T 3hp7_A          200 GIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPI  234 (291)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHTTEEEEEEEECSS
T ss_pred             CccCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Confidence               1111    1234445443 4899887766544

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.29  E-value=1.2e-11  Score=102.66  Aligned_cols=131  Identities=16%  Similarity=0.038  Sum_probs=88.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++++|||||||+|..+..+++.  ..+|+++|+ +++++.+++++.......        ...++++...|..+... ..
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~--------~~~~v~~~~~D~~~~~~-~~  165 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSL--------ADPRATVRVGDGLAFVR-QT  165 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHHHH-SS
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhccc--------CCCcEEEEECcHHHHHH-hc
Confidence            5679999999999999999976  357999999 669999999874311100        03578888866543210 00


Q ss_pred             cCCCccEEEEecC-CCCCC--h--HHHHHHHHHhhCCCcEEEEEEEecC--chHHHHHHHHHhc-CCeEEE
Q 027659          141 VAPPFDYIIGTDV-YAEHL--L--EPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQMWKS-NFNVKL  203 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~--~--~~l~~~l~~~l~~~g~~~i~~~~r~--~~~~~~f~~~~~~-~f~v~~  203 (220)
                      ..++||+|++..+ .....  +  ..+++.+.++|+|||.+++......  ......+.+.+++ +|....
T Consensus       166 ~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~GF~~v~  236 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRETGFASVQ  236 (304)
T ss_dssp             CTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHHTCSEEE
T ss_pred             cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhCCCCcEE
Confidence            2578999999766 33211  1  6889999999999999998754421  2234566666765 586543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.28  E-value=6.6e-11  Score=99.31  Aligned_cols=126  Identities=13%  Similarity=0.082  Sum_probs=82.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++.+|||+|||+|..++.+++. |  .+|+++|. +++++.+++|+...+..... +.......++++...|..+...
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~l-n~~~~~~~~v~~~~~d~~~~~~  181 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKL-SHVEEWPDNVDFIHKDISGATE  181 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTT-TCSSCCCCCEEEEESCTTCCC-
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhccccc-ccccccCCceEEEECChHHccc
Confidence            347889999999999999999986 5  57999999 67999999999864300000 0000012478888866654320


Q ss_pred             ccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh
Q 027659          138 IKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  196 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~  196 (220)
                       +...+.||+|+++.. ..     .++..+.++|+|||.+++..+...  ....+++.++
T Consensus       182 -~~~~~~fD~V~~~~~~~~-----~~l~~~~~~LkpgG~lv~~~~~~~--~~~~~~~~l~  233 (336)
T 2b25_A          182 -DIKSLTFDAVALDMLNPH-----VTLPVFYPHLKHGGVCAVYVVNIT--QVIELLDGIR  233 (336)
T ss_dssp             -------EEEEEECSSSTT-----TTHHHHGGGEEEEEEEEEEESSHH--HHHHHHHHHH
T ss_pred             -ccCCCCeeEEEECCCCHH-----HHHHHHHHhcCCCcEEEEEeCCHH--HHHHHHHHHH
Confidence             112457999998655 33     267888999999999997765332  2344455443

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.28  E-value=1e-11  Score=104.85  Aligned_cols=100  Identities=15%  Similarity=0.092  Sum_probs=76.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+.+|||+|||+|..+..+++..  .+++++|.++++.  ++++...+.           ..++++...|..+.  .   
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~--~~~~~~~~~-----------~~~v~~~~~d~~~~--~---  245 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA--RHRLDAPDV-----------AGRWKVVEGDFLRE--V---  245 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT--TCCCCCGGG-----------TTSEEEEECCTTTC--C---
T ss_pred             CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh--cccccccCC-----------CCCeEEEecCCCCC--C---
Confidence            56799999999999999999864  3688999976554  333332232           35799999776522  2   


Q ss_pred             CCCccEEEEecC-CCCCCh--HHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAEHLL--EPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~--~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      + .||+|+++.+ ++....  ..+++.+.++|+|||.+++....
T Consensus       246 p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~  288 (348)
T 3lst_A          246 P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAV  288 (348)
T ss_dssp             C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECC
T ss_pred             C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            3 8999999999 665544  69999999999999999997653

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.27  E-value=1.4e-11  Score=107.46  Aligned_cols=141  Identities=12%  Similarity=0.099  Sum_probs=96.3

Q ss_pred             ccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhc
Q 027659           38 VWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRIS  113 (220)
Q Consensus        38 ~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~  113 (220)
                      .-.++.+++..+.           ...|.+|||+|||+|..++.+|..   ..+|+++|+ +++++.+++|++.++.   
T Consensus        90 Qd~ss~l~~~~L~-----------~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~---  155 (456)
T 3m4x_A           90 QEPSAMIVGTAAA-----------AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV---  155 (456)
T ss_dssp             CCTTTHHHHHHHC-----------CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC---
T ss_pred             ECHHHHHHHHHcC-----------CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---
Confidence            3455677777663           236789999999999999999865   357999999 5699999999999886   


Q ss_pred             cCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCC----------------------ChHHHHHHHHHhh
Q 027659          114 QMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEH----------------------LLEPLLQTIFALS  170 (220)
Q Consensus       114 ~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~----------------------~~~~l~~~l~~~l  170 (220)
                               .++.+...|.....  ....+.||+|++..+ ....                      ....++..+.++|
T Consensus       156 ---------~nv~v~~~Da~~l~--~~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~L  224 (456)
T 3m4x_A          156 ---------SNAIVTNHAPAELV--PHFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKML  224 (456)
T ss_dssp             ---------SSEEEECCCHHHHH--HHHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTE
T ss_pred             ---------CceEEEeCCHHHhh--hhccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhc
Confidence                     36777764433221  113578999998765 2211                      1126788888899


Q ss_pred             CCCcEEEEEEEecCch----HHHHHHHHHhcCCeEEEee
Q 027659          171 GPKTTILLGYEIRSTS----VHEQMLQMWKSNFNVKLVP  205 (220)
Q Consensus       171 ~~~g~~~i~~~~r~~~----~~~~f~~~~~~~f~v~~v~  205 (220)
                      +|||.++++...-.++    +...|++..  .|++..++
T Consensus       225 kpGG~LvYsTCs~~~eEne~vv~~~l~~~--~~~l~~~~  261 (456)
T 3m4x_A          225 KNKGQLIYSTCTFAPEENEEIISWLVENY--PVTIEEIP  261 (456)
T ss_dssp             EEEEEEEEEESCCCGGGTHHHHHHHHHHS--SEEEECCC
T ss_pred             CCCcEEEEEEeecccccCHHHHHHHHHhC--CCEEEecc
Confidence            9999988876544332    334444432  36665553

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.26  E-value=1.3e-11  Score=102.12  Aligned_cols=125  Identities=13%  Similarity=0.039  Sum_probs=85.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHH--hhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++|||||||+|..+..+++. + .+|+++|+ +++++.+++|+..  ++..          ..++++...|..+.  .
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~----------~~~v~~~~~D~~~~--l  157 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFD----------DPRAEIVIANGAEY--V  157 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGG----------CTTEEEEESCHHHH--G
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccC----------CCceEEEECcHHHH--H
Confidence            4579999999999999999986 3 57999999 6699999999865  2220          24788888654332  1


Q ss_pred             cccCCCccEEEEecC-CCCC-----ChHHHHHHHHHhhCCCcEEEEEEEe--cCchHHHHHHHHHhcCCe
Q 027659          139 KAVAPPFDYIIGTDV-YAEH-----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  200 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~-----~~~~l~~~l~~~l~~~g~~~i~~~~--r~~~~~~~f~~~~~~~f~  200 (220)
                      ....++||+|++... .+..     ....+++.+.++|+|||.+++....  ..........+.+++.|.
T Consensus       158 ~~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  227 (296)
T 1inl_A          158 RKFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFP  227 (296)
T ss_dssp             GGCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCS
T ss_pred             hhCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHHHCC
Confidence            123568999998544 2111     2378899999999999999986433  222234455566655553

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.25  E-value=1.5e-10  Score=89.59  Aligned_cols=131  Identities=11%  Similarity=0.058  Sum_probs=83.8

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh----CCeEEEecchhhHHHHHHHHHHhhhhhccCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL----GCNVITTDQIEVLPLLKRNVEWNTSRISQMN  116 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~----g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~  116 (220)
                      ++..|.+.+...       ....++.+|||||||+|..++.+++.    +.+|+++|.+++.          .       
T Consensus         6 ~~~kl~~~~~~~-------~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~----------~-------   61 (201)
T 2plw_A            6 AAYKLIELDNKY-------LFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD----------P-------   61 (201)
T ss_dssp             THHHHHHHHHHH-------CCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC----------C-------
T ss_pred             HHHHHHHHHHHc-------CCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC----------C-------
Confidence            455566655433       12235679999999999999999976    3579999985521          0       


Q ss_pred             CCCCCCCceEEEEeeeCCCCC----------------c------cccCCCccEEEEecC-CCCC----Ch-------HHH
Q 027659          117 PGSDLLGSIQAVELDWGNEDH----------------I------KAVAPPFDYIIGTDV-YAEH----LL-------EPL  162 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~----------------~------~~~~~~fD~V~~~d~-y~~~----~~-------~~l  162 (220)
                           ..++.+...|+.+...                .      .....+||+|+++.+ ....    ..       ..+
T Consensus        62 -----~~~v~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~  136 (201)
T 2plw_A           62 -----IPNVYFIQGEIGKDNMNNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSI  136 (201)
T ss_dssp             -----CTTCEEEECCTTTTSSCCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHH
T ss_pred             -----CCCceEEEccccchhhhhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHH
Confidence                 1256777766654320                0      013468999999876 4321    11       236


Q ss_pred             HHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEE
Q 027659          163 LQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK  202 (220)
Q Consensus       163 ~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~  202 (220)
                      ++.+.++|+|||.+++.......  ...+.+.++..|...
T Consensus       137 l~~~~~~LkpgG~lv~~~~~~~~--~~~l~~~l~~~f~~v  174 (201)
T 2plw_A          137 THFMEQYINIGGTYIVKMYLGSQ--TNNLKTYLKGMFQLV  174 (201)
T ss_dssp             HHHHHHHEEEEEEEEEEEECSTT--HHHHHHHHHTTEEEE
T ss_pred             HHHHHHHccCCCEEEEEEeCCCC--HHHHHHHHHHHHheE
Confidence            78888999999999886543322  355666666666543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.25  E-value=1.2e-11  Score=97.75  Aligned_cols=105  Identities=22%  Similarity=0.247  Sum_probs=78.2

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .++.+|||+|||+|..+..+++. +  .+|+++|. +++++.+++|+..++....       ...++.+...|....   
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~~~---  145 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLL-------SSGRVQLVVGDGRMG---  145 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHH-------HTSSEEEEESCGGGC---
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhccccc-------CCCcEEEEECCcccC---
Confidence            36789999999999999999976 4  58999998 6699999999887642000       014688888665432   


Q ss_pred             cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ......||+|+++.+ ..      +++.+.++|+|||.+++.....
T Consensus       146 ~~~~~~fD~i~~~~~~~~------~~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          146 YAEEAPYDAIHVGAAAPV------VPQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             CGGGCCEEEEEECSBBSS------CCHHHHHTEEEEEEEEEEESCT
T ss_pred             cccCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEEEEecC
Confidence            112467999998877 32      3367888999999999987643

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.25  E-value=7.4e-11  Score=95.61  Aligned_cols=95  Identities=12%  Similarity=0.063  Sum_probs=74.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+.+|||+|||+|..+..+++.  +.+|+++|. +++++.++++.                 .++.+...|+.+   .+.
T Consensus        85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----------------~~~~~~~~d~~~---~~~  144 (269)
T 1p91_A           85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----------------PQVTFCVASSHR---LPF  144 (269)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----------------TTSEEEECCTTS---CSB
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----------------CCcEEEEcchhh---CCC
Confidence            5779999999999999999986  779999999 56888887652                 246777755543   333


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ..++||+|+++.+  .    ..++.+.++|+|||.+++..+...
T Consensus       145 ~~~~fD~v~~~~~--~----~~l~~~~~~L~pgG~l~~~~~~~~  182 (269)
T 1p91_A          145 SDTSMDAIIRIYA--P----CKAEELARVVKPGGWVITATPGPR  182 (269)
T ss_dssp             CTTCEEEEEEESC--C----CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCCceeEEEEeCC--h----hhHHHHHHhcCCCcEEEEEEcCHH
Confidence            4578999998766  1    236888899999999999887654

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.25  E-value=4.5e-11  Score=97.84  Aligned_cols=128  Identities=11%  Similarity=0.010  Sum_probs=89.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+++|||||||+|..+..+++. + .+|+++|+ +++++.+++|+.......        ...++++...|..+.  +..
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~--------~~~rv~v~~~D~~~~--l~~  144 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKL--------DDPRVDVQVDDGFMH--IAK  144 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTT--------TSTTEEEEESCSHHH--HHT
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcccc--------CCCceEEEECcHHHH--Hhh
Confidence            4679999999999999999986 4 57999999 679999999876521100        135788887543221  222


Q ss_pred             cCCCccEEEEecCC-CCC----ChHHHHHHHHHhhCCCcEEEEEEEe--cCchHHHHHHHHHhcCCeE
Q 027659          141 VAPPFDYIIGTDVY-AEH----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       141 ~~~~fD~V~~~d~y-~~~----~~~~l~~~l~~~l~~~g~~~i~~~~--r~~~~~~~f~~~~~~~f~v  201 (220)
                      ..++||+|++...+ ...    ....+++.+.++|+|||.+++....  ..........+.+++.|..
T Consensus       145 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  212 (275)
T 1iy9_A          145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPI  212 (275)
T ss_dssp             CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHhCCC
Confidence            35789999995543 211    1367999999999999999886432  2233455666777777754

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.24  E-value=3.4e-11  Score=98.48  Aligned_cols=106  Identities=10%  Similarity=0.022  Sum_probs=81.1

Q ss_pred             CCcEEEeCCcc---cHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           65 GKRVIELGAGC---GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        65 ~~~vLELGcG~---G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..+|||||||+   |.....+++.  +++|+++|. +.|++.+++++..              ..++++...|..+....
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~--------------~~~v~~~~~D~~~~~~~  143 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK--------------DPNTAVFTADVRDPEYI  143 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT--------------CTTEEEEECCTTCHHHH
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC--------------CCCeEEEEeeCCCchhh
Confidence            36899999999   9887777664  578999999 6799999988742              24688888776543210


Q ss_pred             --------cccCCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          139 --------KAVAPPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       139 --------~~~~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                              .....+||+|+++.+ ++..  ....+++.+.++|+|||.++++.....
T Consensus       144 ~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~  200 (274)
T 2qe6_A          144 LNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDT  200 (274)
T ss_dssp             HHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCS
T ss_pred             hccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCc
Confidence                    011247999999998 5433  489999999999999999999987653

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.24  E-value=8e-11  Score=103.41  Aligned_cols=104  Identities=15%  Similarity=0.176  Sum_probs=79.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .|.+|||+|||+|..++.+|..   +.+|+++|+ +++++.+++|++.++.            .++.+...|...   ..
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~------------~nv~~~~~D~~~---~~  181 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI------------SNVALTHFDGRV---FG  181 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC------------CSEEEECCCSTT---HH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC------------CcEEEEeCCHHH---hh
Confidence            6789999999999999999975   257999999 5699999999998875            367887755433   22


Q ss_pred             c-cCCCccEEEEecC-CC-------CCC---------------hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          140 A-VAPPFDYIIGTDV-YA-------EHL---------------LEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       140 ~-~~~~fD~V~~~d~-y~-------~~~---------------~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      . ..+.||.|++..+ ..       ++.               ...+++.+.++|+|||.++++...
T Consensus       182 ~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs  248 (479)
T 2frx_A          182 AAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT  248 (479)
T ss_dssp             HHSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             hhccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence            1 3568999998655 21       110               246788888999999999887654

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.24  E-value=3.6e-11  Score=105.00  Aligned_cols=120  Identities=17%  Similarity=0.112  Sum_probs=86.3

Q ss_pred             cchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhcc
Q 027659           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQ  114 (220)
Q Consensus        39 W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~  114 (220)
                      -.++.+++..+.           ...|.+|||+|||+|..++.+|.. +  .+|+++|+ +++++.+++|++.++.    
T Consensus        87 d~ss~l~a~~L~-----------~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~----  151 (464)
T 3m6w_A           87 EPSAQAVGVLLD-----------PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGA----  151 (464)
T ss_dssp             CTTTHHHHHHHC-----------CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCC----
T ss_pred             CHHHHHHHHhcC-----------cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC----
Confidence            345666666663           236789999999999999999975 2  57999999 6699999999999876    


Q ss_pred             CCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCC--------CCC---------------hHHHHHHHHHhhC
Q 027659          115 MNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYA--------EHL---------------LEPLLQTIFALSG  171 (220)
Q Consensus       115 ~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~--------~~~---------------~~~l~~~l~~~l~  171 (220)
                              . +.+...|..+...  ...+.||+|++..++.        ++.               ...+++.+.++|+
T Consensus       152 --------~-v~~~~~Da~~l~~--~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk  220 (464)
T 3m6w_A          152 --------P-LAVTQAPPRALAE--AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLG  220 (464)
T ss_dssp             --------C-CEEECSCHHHHHH--HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEE
T ss_pred             --------e-EEEEECCHHHhhh--hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcC
Confidence                    2 6776644332211  1357899999765421        111               1668888888999


Q ss_pred             CCcEEEEEEEecC
Q 027659          172 PKTTILLGYEIRS  184 (220)
Q Consensus       172 ~~g~~~i~~~~r~  184 (220)
                      |||.++++...-.
T Consensus       221 pGG~LvysTCs~~  233 (464)
T 3m6w_A          221 PGGVLVYSTCTFA  233 (464)
T ss_dssp             EEEEEEEEESCCC
T ss_pred             CCcEEEEEeccCc
Confidence            9999888765433

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.24  E-value=3.1e-11  Score=95.67  Aligned_cols=104  Identities=13%  Similarity=0.159  Sum_probs=77.4

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C-------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeC
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G-------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  133 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g-------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~  133 (220)
                      .++.+|||+|||+|..+..+++. +       .+|+++|. +++++.+++|+..++....       ...++.+...|..
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-------~~~~v~~~~~d~~  155 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSML-------DSGQLLIVEGDGR  155 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHH-------HHTSEEEEESCGG
T ss_pred             CCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcccc-------CCCceEEEECCcc
Confidence            36779999999999999999974 4       48999998 6799999999987651000       0136888886654


Q ss_pred             CCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          134 NEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       134 ~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ..  .+ ...+||+|+++.+ .+.      .+.+.++|+|||.+++....
T Consensus       156 ~~--~~-~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          156 KG--YP-PNAPYNAIHVGAAAPDT------PTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             GC--CG-GGCSEEEEEECSCBSSC------CHHHHHTEEEEEEEEEEESC
T ss_pred             cC--CC-cCCCccEEEECCchHHH------HHHHHHHhcCCCEEEEEEec
Confidence            42  11 1368999999887 432      26788899999999998754

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.23  E-value=8.3e-11  Score=102.05  Aligned_cols=120  Identities=14%  Similarity=0.079  Sum_probs=86.7

Q ss_pred             cchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccC
Q 027659           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (220)
Q Consensus        39 W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (220)
                      -.++.+++..+.           ..++.+|||+|||+|..++.++..+  .+|+++|. +.+++.+++|+..++.     
T Consensus       232 d~~s~~~~~~l~-----------~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-----  295 (429)
T 1sqg_A          232 DASAQGCMTWLA-----------PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-----  295 (429)
T ss_dssp             CHHHHTHHHHHC-----------CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-----
T ss_pred             CHHHHHHHHHcC-----------CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-----
Confidence            345666666553           2367899999999999999999875  58999999 6699999999998865     


Q ss_pred             CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCC------CC----------------hHHHHHHHHHhhCC
Q 027659          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAE------HL----------------LEPLLQTIFALSGP  172 (220)
Q Consensus       116 ~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~------~~----------------~~~l~~~l~~~l~~  172 (220)
                              ++.+...|....... ...++||+|++..+ ...      ..                ...+++.+.++|+|
T Consensus       296 --------~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp  366 (429)
T 1sqg_A          296 --------KATVKQGDGRYPSQW-CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT  366 (429)
T ss_dssp             --------CCEEEECCTTCTHHH-HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE
T ss_pred             --------CeEEEeCchhhchhh-cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence                    467777655443210 12468999998665 221      11                14778888889999


Q ss_pred             CcEEEEEEEec
Q 027659          173 KTTILLGYEIR  183 (220)
Q Consensus       173 ~g~~~i~~~~r  183 (220)
                      ||.++++...-
T Consensus       367 GG~lvystcs~  377 (429)
T 1sqg_A          367 GGTLVYATCSV  377 (429)
T ss_dssp             EEEEEEEESCC
T ss_pred             CCEEEEEECCC
Confidence            99999876443

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.23  E-value=3.6e-11  Score=100.28  Aligned_cols=127  Identities=16%  Similarity=0.088  Sum_probs=89.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHH-hhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .+++|||||||+|..+..+++.  +.+|+++|+ +++++.+++++.. |....        ...++++...|..+.  ++
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~--------~~~~v~~~~~D~~~~--l~  146 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAF--------DDPRAVLVIDDARAY--LE  146 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGG--------GCTTEEEEESCHHHH--HH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccc--------cCCceEEEEchHHHH--HH
Confidence            4579999999999999999976  457999999 6699999998764 21000        024788887554332  22


Q ss_pred             ccCCCccEEEEecC-CC---CC--C--hHHHHHHHHHhhCCCcEEEEEEEecC---chHHHHHHHHHhcCCe
Q 027659          140 AVAPPFDYIIGTDV-YA---EH--L--LEPLLQTIFALSGPKTTILLGYEIRS---TSVHEQMLQMWKSNFN  200 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~---~~--~--~~~l~~~l~~~l~~~g~~~i~~~~r~---~~~~~~f~~~~~~~f~  200 (220)
                      ...++||+|++... ..   ..  .  ...+++.+.++|+|||.+++......   ........+.+++.|.
T Consensus       147 ~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~~F~  218 (314)
T 1uir_A          147 RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR  218 (314)
T ss_dssp             HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCS
T ss_pred             hcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHHHCC
Confidence            23578999999766 33   11  1  47889999999999999988654322   3345666677777664

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.23  E-value=2.3e-11  Score=100.95  Aligned_cols=124  Identities=16%  Similarity=0.068  Sum_probs=84.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHH--hhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++|||||||+|..+..+++..  .+|+++|+ +++++.+++|+..  ++..          ..++++...|..+.  +
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~----------~~rv~v~~~Da~~~--l  162 (304)
T 2o07_A           95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYS----------SSKLTLHVGDGFEF--M  162 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG----------CTTEEEEESCHHHH--H
T ss_pred             CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccC----------CCcEEEEECcHHHH--H
Confidence            56799999999999999999864  57999999 6799999999865  2221          24788887543221  1


Q ss_pred             cccCCCccEEEEecC-CCCC----ChHHHHHHHHHhhCCCcEEEEEEEe--cCchHHHHHHHHHhcCC
Q 027659          139 KAVAPPFDYIIGTDV-YAEH----LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNF  199 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~----~~~~l~~~l~~~l~~~g~~~i~~~~--r~~~~~~~f~~~~~~~f  199 (220)
                      +...++||+|++... ....    ....+++.+.++|+|||.+++....  ..........+.+++.|
T Consensus       163 ~~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~f  230 (304)
T 2o07_A          163 KQNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLF  230 (304)
T ss_dssp             HTCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHC
T ss_pred             hhCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccchHHHHHHHHHHHHhC
Confidence            223568999998655 2211    2356899999999999999886633  22223344444555444

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.22  E-value=1.3e-11  Score=103.81  Aligned_cols=126  Identities=15%  Similarity=0.055  Sum_probs=86.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHh--hhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++|||||||+|..+..+++.  +.+|+++|+ +++++.+++|+...  +..          ..++++...|+.+... 
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~----------~~rv~~~~~D~~~~l~-  188 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYE----------DPRVNLVIGDGVAFLK-  188 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGG----------STTEEEEESCHHHHHH-
T ss_pred             CCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccC----------CCcEEEEECCHHHHHH-
Confidence            4679999999999999999976  358999999 66999999998753  220          2478888866543210 


Q ss_pred             cccCCCccEEEEecC--CCCCC---hHHHHHHHHHhhCCCcEEEEEEEe--cCchHHHHHHHHHhcCCe
Q 027659          139 KAVAPPFDYIIGTDV--YAEHL---LEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  200 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~--y~~~~---~~~l~~~l~~~l~~~g~~~i~~~~--r~~~~~~~f~~~~~~~f~  200 (220)
                      ....++||+|+++..  .....   ...+++.+.++|+|||.+++....  ..........+.+++.|.
T Consensus       189 ~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~  257 (334)
T 1xj5_A          189 NAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFK  257 (334)
T ss_dssp             TSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred             hccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCccccHHHHHHHHHHHHHhCc
Confidence            012468999998654  22111   478999999999999999885322  222223344455554443

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.21  E-value=1.6e-11  Score=100.43  Aligned_cols=116  Identities=21%  Similarity=0.286  Sum_probs=78.2

Q ss_pred             CCCcEEEeCCcccH----HHHHHHHh-C-----CeEEEecc-hhhHHHHHHHHHHhhhh--h-----ccC----CCC-C-
Q 027659           64 KGKRVIELGAGCGV----AGFGMALL-G-----CNVITTDQ-IEVLPLLKRNVEWNTSR--I-----SQM----NPG-S-  119 (220)
Q Consensus        64 ~~~~vLELGcG~G~----~~l~la~~-g-----~~v~~~D~-~~~l~~~~~n~~~n~~~--~-----~~~----~~~-~-  119 (220)
                      ++.+|||+|||||-    +++.++.. +     .+|++||+ ++||+.|++++-.....  +     .+.    ... . 
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34689999999998    66667754 3     48999999 56999999875211000  0     000    000 0 


Q ss_pred             ------CCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CCCC-ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          120 ------DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YAEH-LLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       120 ------~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~~~-~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                            ....+|.+...|+.+.. .+ ..++||+|+|..+  |... ....+++.+.+.|+|||.+++.+.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~-~~-~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQ-YN-VPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSS-CC-CCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             ceeechhhcccCeEEecccCCCC-CC-cCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence                  00136899998876531 11 1468999999988  5543 357899999999999999998543

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.21  E-value=2.4e-10  Score=96.69  Aligned_cols=102  Identities=22%  Similarity=0.151  Sum_probs=80.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC--eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC--NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ...+|||+|||+|..++.+++...  +++..|.|++++.+++++....            ..+|++...|....     +
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~------------~~rv~~~~gD~~~~-----~  241 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQE------------EEQIDFQEGDFFKD-----P  241 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--------------CCSEEEEESCTTTS-----C
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcc------------cCceeeecCccccC-----C
Confidence            457899999999999999998754  6888889999999988775433            36899999766432     2


Q ss_pred             CCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ...+|+|+...+ ++.+  ....+++.+.+.|+|||.++|....
T Consensus       242 ~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~  285 (353)
T 4a6d_A          242 LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESL  285 (353)
T ss_dssp             CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEee
Confidence            346899999999 5443  3568899999999999999998753

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.20  E-value=3.4e-11  Score=98.86  Aligned_cols=130  Identities=18%  Similarity=0.077  Sum_probs=85.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHh--hhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .+++|||||||+|..+..+++.+. +|+++|+ +++++.+++++ ..  +......+   ....++++...|..+.  +.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~---~~~~~v~~~~~D~~~~--l~  148 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLN---GKHEKAKLTIGDGFEF--IK  148 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHT---TCCSSEEEEESCHHHH--HH
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhcccccccccc---CCCCcEEEEECchHHH--hc
Confidence            467999999999999999998754 7999999 67999999987 32  11000000   0135788887543221  11


Q ss_pred             ccCCCccEEEEecC-CCC--CC--hHHHHHHHHHhhCCCcEEEEEEEec--CchHHHHHHHHHhcCCe
Q 027659          140 AVAPPFDYIIGTDV-YAE--HL--LEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN  200 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~--~~--~~~l~~~l~~~l~~~g~~~i~~~~r--~~~~~~~f~~~~~~~f~  200 (220)
                      . .++||+|++..+ ...  ..  ...+++.+.++|+|||.+++.....  .......+.+.++..|.
T Consensus       149 ~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~f~  215 (281)
T 1mjf_A          149 N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFD  215 (281)
T ss_dssp             H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCS
T ss_pred             c-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHHCC
Confidence            2 568999998655 221  11  3778999999999999998865442  23334555555655554

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.20  E-value=8e-11  Score=90.77  Aligned_cols=114  Identities=18%  Similarity=0.123  Sum_probs=74.4

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C----------CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEE-Ee
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G----------CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-EL  130 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g----------~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~-~l  130 (220)
                      .++.+|||||||+|..++.+++. +          .+|+++|.+++.          .            ..++++. ..
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~----------~------------~~~~~~~~~~   78 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF----------P------------LEGATFLCPA   78 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC----------C------------CTTCEEECSC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc----------c------------CCCCeEEEec
Confidence            46789999999999999999976 4          679999986521          0            1245666 55


Q ss_pred             eeCCCCCc-----cccCCCccEEEEecC-CCCCC----h-------HHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHH
Q 027659          131 DWGNEDHI-----KAVAPPFDYIIGTDV-YAEHL----L-------EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQ  193 (220)
Q Consensus       131 dw~~~~~~-----~~~~~~fD~V~~~d~-y~~~~----~-------~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~  193 (220)
                      |+......     ....++||+|+++.. .....    .       ..+++.+.++|+|||.+++.......  ...+.+
T Consensus        79 d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~--~~~~~~  156 (196)
T 2nyu_A           79 DVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ--SRRLQR  156 (196)
T ss_dssp             CTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG--GHHHHH
T ss_pred             cCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc--HHHHHH
Confidence            44332100     012358999999765 32111    1       47788889999999999987543322  345555


Q ss_pred             HHhcCCe
Q 027659          194 MWKSNFN  200 (220)
Q Consensus       194 ~~~~~f~  200 (220)
                      .++..|.
T Consensus       157 ~l~~~f~  163 (196)
T 2nyu_A          157 RLTEEFQ  163 (196)
T ss_dssp             HHHHHEE
T ss_pred             HHHHHhc
Confidence            5555453

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.20  E-value=2.5e-11  Score=103.66  Aligned_cols=100  Identities=21%  Similarity=0.158  Sum_probs=76.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHh---------------hhhhccCCCCCCCCCce
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWN---------------TSRISQMNPGSDLLGSI  125 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n---------------~~~~~~~~~~~~~~~~v  125 (220)
                      ++.+|||+|||+|..|+.+|+. + .+|+++|+ +++++.+++|++.|               ++            .++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl------------~~i  114 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE------------KTI  114 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS------------SEE
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC------------Cce
Confidence            5679999999999999999986 4 47999998 67999999999999               43            237


Q ss_pred             EEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          126 QAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       126 ~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ++...|.....  ....+.||+|+. |+|.  ....+++...++++++|.+++++
T Consensus       115 ~v~~~Da~~~~--~~~~~~fD~I~l-DP~~--~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          115 VINHDDANRLM--AERHRYFHFIDL-DPFG--SPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             EEEESCHHHHH--HHSTTCEEEEEE-CCSS--CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcCcHHHHH--HhccCCCCEEEe-CCCC--CHHHHHHHHHHhcCCCCEEEEEe
Confidence            77775543321  112457999994 5522  23688888889999999988876

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.19  E-value=1.6e-11  Score=101.08  Aligned_cols=78  Identities=19%  Similarity=0.213  Sum_probs=61.9

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+ +++++.+++++..++.           ..++++...|..+..    
T Consensus        26 ~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~v~~~~~D~~~~~----   90 (285)
T 1zq9_A           26 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV-----------ASKLQVLVGDVLKTD----   90 (285)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEESCTTTSC----
T ss_pred             CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCceEEEEcceeccc----
Confidence            346789999999999999999999999999999 6699999998865543           246888886665431    


Q ss_pred             cCCCccEEEEecCCC
Q 027659          141 VAPPFDYIIGTDVYA  155 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~  155 (220)
                       ...||+|+++.+|+
T Consensus        91 -~~~fD~vv~nlpy~  104 (285)
T 1zq9_A           91 -LPFFDTCVANLPYQ  104 (285)
T ss_dssp             -CCCCSEEEEECCGG
T ss_pred             -chhhcEEEEecCcc
Confidence             23799999987744

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.18  E-value=2.7e-10  Score=99.43  Aligned_cols=129  Identities=16%  Similarity=0.092  Sum_probs=88.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .|.+|||+|||+|..++.++..  + .+|+++|. +.+++.+++|++.++.            .++.+...|....... 
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~------------~~v~~~~~D~~~~~~~-  325 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI------------KIVKPLVKDARKAPEI-  325 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCTTCCSSS-
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------------CcEEEEEcChhhcchh-
Confidence            6779999999999999999975  3 57999999 5699999999998875            3688887665443211 


Q ss_pred             ccCCCccEEEEecC-CCC------CC---------h-------HHHHHHHHHhhCCCcEEEEEEEecCchH-HHHHHHHH
Q 027659          140 AVAPPFDYIIGTDV-YAE------HL---------L-------EPLLQTIFALSGPKTTILLGYEIRSTSV-HEQMLQMW  195 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~------~~---------~-------~~l~~~l~~~l~~~g~~~i~~~~r~~~~-~~~f~~~~  195 (220)
                      ...+.||+|++..+ ...      ..         +       ..+++.+.++|+|||.++++...-.+.. ...+...+
T Consensus       326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l  405 (450)
T 2yxl_A          326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFL  405 (450)
T ss_dssp             SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHH
T ss_pred             hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHH
Confidence            12367999998544 211      11         1       5678888999999999988765443321 22222233


Q ss_pred             hc--CCeEEEee
Q 027659          196 KS--NFNVKLVP  205 (220)
Q Consensus       196 ~~--~f~v~~v~  205 (220)
                      ++  +|++..+.
T Consensus       406 ~~~~~~~~~~~~  417 (450)
T 2yxl_A          406 NVHPEFKLVPLK  417 (450)
T ss_dssp             HHCSSCEECCCC
T ss_pred             HhCCCCEEeecc
Confidence            33  46665443

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.18  E-value=2.7e-11  Score=101.00  Aligned_cols=125  Identities=14%  Similarity=0.025  Sum_probs=82.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHh--hhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWN--TSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++|||||||+|..+..+++.  +.+|+++|+ +++++.+++++...  +..          ..++++...|..+.  +
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~----------~~rv~~~~~D~~~~--l  175 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFS----------HPKLDLFCGDGFEF--L  175 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGG----------CTTEEEECSCHHHH--H
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccC----------CCCEEEEEChHHHH--H
Confidence            4579999999999999999976  357999999 66999999987643  210          24788887554331  1


Q ss_pred             cccCCCccEEEEecC-CC-CC--Ch-HHHHHHHHHhhCCCcEEEEEEEec--CchHHHHHHHHHhcCCe
Q 027659          139 KAVAPPFDYIIGTDV-YA-EH--LL-EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN  200 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~-~~--~~-~~l~~~l~~~l~~~g~~~i~~~~r--~~~~~~~f~~~~~~~f~  200 (220)
                      ....++||+|++... .. ..  .+ ..+++.+.++|+|||.+++.....  .........+.+++.|.
T Consensus       176 ~~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~vF~  244 (314)
T 2b2c_A          176 KNHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFP  244 (314)
T ss_dssp             HHCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCS
T ss_pred             HhcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCcccCHHHHHHHHHHHHHHCC
Confidence            123568999998655 22 11  12 788999999999999998864221  22223444455555453

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.18  E-value=2.7e-11  Score=103.72  Aligned_cols=102  Identities=12%  Similarity=0.145  Sum_probs=78.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCc-eEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGS-IQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~-v~~~~ldw~~~~~~  138 (220)
                      .|.+|||++||+|..|+.+|..  |+ +|+++|+ +++++.+++|++.|++           ..+ +++...|..+.  +
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl-----------~~~~v~v~~~Da~~~--l  118 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI-----------PEDRYEIHGMEANFF--L  118 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTC-----------CGGGEEEECSCHHHH--H
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCC-----------CCceEEEEeCCHHHH--H
Confidence            4679999999999999999985  54 5999998 6799999999999987           234 77777544221  1


Q ss_pred             c-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          139 K-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       139 ~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      . ...+.||+|+..+ |.  ....+++...++|++||.+++++.
T Consensus       119 ~~~~~~~fD~V~lDP-~g--~~~~~l~~a~~~Lk~gGll~~t~t  159 (392)
T 3axs_A          119 RKEWGFGFDYVDLDP-FG--TPVPFIESVALSMKRGGILSLTAT  159 (392)
T ss_dssp             HSCCSSCEEEEEECC-SS--CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHhhCCCCcEEEECC-Cc--CHHHHHHHHHHHhCCCCEEEEEec
Confidence            1 1245799999766 32  235788888899999999888773

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.17  E-value=5.3e-11  Score=97.83  Aligned_cols=128  Identities=16%  Similarity=0.108  Sum_probs=89.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ++++|||||||+|..+..+++..  .+|+++|+ +++++.+++++..++...        ...++++...|..+.  ...
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~--------~~~~v~~~~~D~~~~--l~~  147 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGY--------EDKRVNVFIEDASKF--LEN  147 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGG--------GSTTEEEEESCHHHH--HHH
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhcccc--------CCCcEEEEECChHHH--HHh
Confidence            56799999999999999999763  57999999 669999999876432100        025788887554332  112


Q ss_pred             cCCCccEEEEecC--CCCC-Ch--HHHHHHHHHhhCCCcEEEEEEEec--CchHHHHHHHHHhcCCeE
Q 027659          141 VAPPFDYIIGTDV--YAEH-LL--EPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~-~~--~~l~~~l~~~l~~~g~~~i~~~~r--~~~~~~~f~~~~~~~f~v  201 (220)
                      ..++||+|++...  .... ..  ..+++.+.++|+|||.+++.....  .......+.+.+++.|..
T Consensus       148 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~  215 (283)
T 2i7c_A          148 VTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKLFKK  215 (283)
T ss_dssp             CCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             CCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHHHCCc
Confidence            2578999998544  2221 22  689999999999999998865432  223355666777776653

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.16  E-value=7.6e-11  Score=98.06  Aligned_cols=123  Identities=12%  Similarity=-0.005  Sum_probs=86.8

Q ss_pred             CcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+|||||||+|.++..+++.  +.+|+++|+ +++++.+++++..+.            ..++++...|..+... ....
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~------------~~rv~v~~~Da~~~l~-~~~~  157 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR------------APRVKIRVDDARMVAE-SFTP  157 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC------------TTTEEEEESCHHHHHH-TCCT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC------------CCceEEEECcHHHHHh-hccC
Confidence            48999999999999999983  568999999 669999998875432            3578888755432210 1124


Q ss_pred             CCccEEEEecC-C--CCCC--hHHHHHHHHHhhCCCcEEEEEEEecCc-hHHHHHHHHHhcCCeE
Q 027659          143 PPFDYIIGTDV-Y--AEHL--LEPLLQTIFALSGPKTTILLGYEIRST-SVHEQMLQMWKSNFNV  201 (220)
Q Consensus       143 ~~fD~V~~~d~-y--~~~~--~~~l~~~l~~~l~~~g~~~i~~~~r~~-~~~~~f~~~~~~~f~v  201 (220)
                      ++||+|++... .  ....  ...+++.+.++|+|||++++-...... .....+.+.+++.|..
T Consensus       158 ~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~~~~~~~~~~~~~tL~~vF~~  222 (317)
T 3gjy_A          158 ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGDHSDLRGAKSELAGMMEVFEH  222 (317)
T ss_dssp             TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEECTTCHHHHHHHHHHHHHCSE
T ss_pred             CCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHHCCc
Confidence            68999998543 2  1221  278999999999999998877654332 2345666777777743

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.16  E-value=8.8e-11  Score=97.25  Aligned_cols=77  Identities=22%  Similarity=0.252  Sum_probs=59.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ...+.+|||+|||+|.++..+++.+.+|+++|+ +++++.+++|+..++.            .++++...|+.+..    
T Consensus        40 ~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~------------~~v~~~~~D~~~~~----  103 (299)
T 2h1r_A           40 IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY------------NNLEVYEGDAIKTV----  103 (299)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC------------CCEEC----CCSSC----
T ss_pred             CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC------------CceEEEECchhhCC----
Confidence            346789999999999999999999889999999 6699999999886653            46788876665432    


Q ss_pred             cCCCccEEEEecCCC
Q 027659          141 VAPPFDYIIGTDVYA  155 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~  155 (220)
                       ...||+|+++.+|+
T Consensus       104 -~~~~D~Vv~n~py~  117 (299)
T 2h1r_A          104 -FPKFDVCTANIPYK  117 (299)
T ss_dssp             -CCCCSEEEEECCGG
T ss_pred             -cccCCEEEEcCCcc
Confidence             24799999987754

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.15  E-value=1.5e-10  Score=97.61  Aligned_cols=102  Identities=10%  Similarity=0.018  Sum_probs=78.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC-------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG-------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g-------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      .+.+|||+|||+|...+.+++..       .+|+++|+ +.+++.++.|+..++.             ++.+...|....
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-------------~~~i~~~D~l~~  196 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------------KMTLLHQDGLAN  196 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------------CCEEEESCTTSC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-------------CceEEECCCCCc
Confidence            46789999999999999998653       56999999 6799999999987764             456666554332


Q ss_pred             CCccccCCCccEEEEecC--CCCCC-----------------hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          136 DHIKAVAPPFDYIIGTDV--YAEHL-----------------LEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       136 ~~~~~~~~~fD~V~~~d~--y~~~~-----------------~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      .    ...+||+|+++++  |....                 ...++..+.++|+|||.+++..+.
T Consensus       197 ~----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~  258 (344)
T 2f8l_A          197 L----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPD  258 (344)
T ss_dssp             C----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred             c----ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence            1    3468999999999  32110                 125788888999999999888764

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.13  E-value=1.5e-10  Score=92.18  Aligned_cols=101  Identities=10%  Similarity=-0.027  Sum_probs=71.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ...+|||||||+|.+++.++ .+.+|+++|+ +.+++.+++++..++.             +..+...|.....    +.
T Consensus       105 ~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g~-------------~~~~~v~D~~~~~----~~  166 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKDW-------------DFTFALQDVLCAP----PA  166 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTTC-------------EEEEEECCTTTSC----CC
T ss_pred             CCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcCC-------------CceEEEeecccCC----CC
Confidence            46699999999999999988 5568999999 5699999999988864             5677765543322    45


Q ss_pred             CCccEEEEecC-CCC-CC-hHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          143 PPFDYIIGTDV-YAE-HL-LEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~-~~-~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      .+||+|++..+ .+- .. -.... .+...|+++++ +++.+.|+
T Consensus       167 ~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~v-vVsfPtks  209 (253)
T 3frh_A          167 EAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRM-AVSFPTRS  209 (253)
T ss_dssp             CBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEE-EEEEECC-
T ss_pred             CCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCE-EEEcChHH
Confidence            68999999987 332 11 12333 44456777755 55566333

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.12  E-value=2.9e-11  Score=99.00  Aligned_cols=139  Identities=11%  Similarity=-0.029  Sum_probs=81.7

Q ss_pred             cchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCC
Q 027659           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPG  118 (220)
Q Consensus        39 W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~  118 (220)
                      =+++..|.+.+...        ...++.+|||||||+|..+..+++. .+|+++|+.+++..++++    ..      +.
T Consensus        65 sR~a~KL~~i~~~~--------~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~m~~~a~~~----~~------~~  125 (276)
T 2wa2_A           65 SRGTAKLAWIDERG--------GVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYTLGTSGHEK----PR------LV  125 (276)
T ss_dssp             CHHHHHHHHHHHTT--------SCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEECCCCTTSCC----CC------CC
T ss_pred             chHHHHHHHHHHcC--------CCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECchhhhhhhhc----hh------hh
Confidence            34455555554431        2346789999999999999999988 689999985553222111    00      00


Q ss_pred             CCCCCceEEE--EeeeCCCCCccccCCCccEEEEecC-CCCCC---hH---HHHHHHHHhhCCCc--EEEEEEEecCchH
Q 027659          119 SDLLGSIQAV--ELDWGNEDHIKAVAPPFDYIIGTDV-YAEHL---LE---PLLQTIFALSGPKT--TILLGYEIRSTSV  187 (220)
Q Consensus       119 ~~~~~~v~~~--~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~---~~---~l~~~l~~~l~~~g--~~~i~~~~r~~~~  187 (220)
                      .....++.+.  ..|..+   +  ++++||+|++.-. +....   ..   .+++.+.++|+|||  .+++.........
T Consensus       126 ~~~~~~v~~~~~~~D~~~---l--~~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~~~~~~  200 (276)
T 2wa2_A          126 ETFGWNLITFKSKVDVTK---M--EPFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLNPYSCD  200 (276)
T ss_dssp             CCTTGGGEEEECSCCGGG---C--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESCCCSHH
T ss_pred             hhcCCCeEEEeccCcHhh---C--CCCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCCCCchh
Confidence            0001257777  544433   2  2568999999765 32211   11   36788889999999  8777433211111


Q ss_pred             HHHHHHHHhcCCeE
Q 027659          188 HEQMLQMWKSNFNV  201 (220)
Q Consensus       188 ~~~f~~~~~~~f~v  201 (220)
                      ...+++.++..|..
T Consensus       201 ~~~~l~~l~~~f~~  214 (276)
T 2wa2_A          201 VLEALMKMQARFGG  214 (276)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHcCC
Confidence            22555556554443

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.10  E-value=7.4e-11  Score=94.95  Aligned_cols=99  Identities=8%  Similarity=0.046  Sum_probs=72.7

Q ss_pred             CCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..+|||||||+|.+++.++..  .++|+++|+ +.+++.+++|+..|+.             ...+...|....    .+
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-------------~~~~~v~D~~~~----~p  195 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-------------PHRTNVADLLED----RL  195 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-------------CEEEEECCTTTS----CC
T ss_pred             CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-------------CceEEEeeeccc----CC
Confidence            458999999999999999876  357999999 5599999999999976             456666443322    25


Q ss_pred             CCCccEEEEecC-CCC-CC-hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAE-HL-LEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~-~~-~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ..+||+|+++.+ .+- .. -...+ .+.+.|+++|.+ ++++.
T Consensus       196 ~~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vv-VSfp~  237 (281)
T 3lcv_B          196 DEPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIV-VTFPT  237 (281)
T ss_dssp             CSCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEE-EEEEC
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEE-Eeccc
Confidence            678999999998 332 21 22344 566778887765 45665

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.10  E-value=9.7e-10  Score=100.76  Aligned_cols=150  Identities=13%  Similarity=0.073  Sum_probs=101.9

Q ss_pred             eEEEeecCeEEEEEeCCCCccccccccc-------hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh
Q 027659           13 VINLEVLGHQLQFSQDPNSKHLGTTVWD-------ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL   85 (220)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~-------~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~   85 (220)
                      .|.+.+.....++.-+.++.+.-.+-|+       -...||..+....       ....+..+||.+||+|.+.+.+|..
T Consensus       139 ~i~v~l~~~~~~l~ld~sg~~LhkRgyr~~~~~apl~e~LAa~ll~~~-------~~~~~~~llDP~CGSGt~lIeAa~~  211 (703)
T 3v97_A          139 RVNVWLHKETASIALDLSGDGLHLRGYRDRAGIAPIKETLAAAIVMRS-------GWQPGTPLLDPMCGSGTLLIEAAML  211 (703)
T ss_dssp             EEEEEEETTEEEEEEESSSSCTTCCSSSCSSCCCSSCHHHHHHHHHHT-------TCCTTSCEEETTCTTSHHHHHHHHH
T ss_pred             EEEEEEECCEEEEEEecCCCccccccccccCCCCCCcHHHHHHHHHhh-------CCCCCCeEEecCCCCcHHHHHHHHH
Confidence            3566677777888777644332222332       2345666665542       2235678999999999999999865


Q ss_pred             C--------------------------------------------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           86 G--------------------------------------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        86 g--------------------------------------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      +                                            .+|+++|+ +.+++.++.|+..+++          
T Consensus       212 a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~agv----------  281 (703)
T 3v97_A          212 ATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNARLAGI----------  281 (703)
T ss_dssp             HTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHHHHHHHHTTC----------
T ss_pred             HhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHHHHHHHHcCC----------
Confidence            3                                            46999999 6799999999999987          


Q ss_pred             CCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCC-----ChHHHHHHHHHhh---CCCcEEEEEEE
Q 027659          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH-----LLEPLLQTIFALS---GPKTTILLGYE  181 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~-----~~~~l~~~l~~~l---~~~g~~~i~~~  181 (220)
                       ...+.+...|..+... +...+.||+|++|++|...     .+..+.+.+.+.+   .|||.+++...
T Consensus       282 -~~~i~~~~~D~~~~~~-~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~  348 (703)
T 3v97_A          282 -GELITFEVKDVAQLTN-PLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA  348 (703)
T ss_dssp             -GGGEEEEECCGGGCCC-SCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             -CCceEEEECChhhCcc-ccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence             3468888877655321 1112389999999997543     3455566555554   47998888654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.08  E-value=7e-11  Score=96.20  Aligned_cols=136  Identities=12%  Similarity=0.016  Sum_probs=80.4

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      +++..|.+.+...        ...++.+|||||||+|..+..+++. .+|+++|+.+++..++++    ..      +..
T Consensus        58 R~a~KL~~i~~~~--------~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~m~~~a~~~----~~------~~~  118 (265)
T 2oxt_A           58 RGTAKLAWMEERG--------YVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYTLGVGGHEV----PR------ITE  118 (265)
T ss_dssp             THHHHHHHHHHHT--------SCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEECCCCSSCCC----CC------CCC
T ss_pred             hHHHHHHHHHHcC--------CCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECchhhhhhhhh----hh------hhh
Confidence            4566666655542        2346789999999999999999988 789999985543221111    00      000


Q ss_pred             CCCCceEEE--EeeeCCCCCccccCCCccEEEEecC-CCCCC---hH---HHHHHHHHhhCCCc--EEEEEEEecCchHH
Q 027659          120 DLLGSIQAV--ELDWGNEDHIKAVAPPFDYIIGTDV-YAEHL---LE---PLLQTIFALSGPKT--TILLGYEIRSTSVH  188 (220)
Q Consensus       120 ~~~~~v~~~--~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~---~~---~l~~~l~~~l~~~g--~~~i~~~~r~~~~~  188 (220)
                      ....++.+.  ..|..+   +  .+++||+|++.-. +....   ..   .++..+.++|+|||  .+++..........
T Consensus       119 ~~~~~v~~~~~~~D~~~---l--~~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~~~~~~~  193 (265)
T 2oxt_A          119 SYGWNIVKFKSRVDIHT---L--PVERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLCPYSVEV  193 (265)
T ss_dssp             BTTGGGEEEECSCCTTT---S--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESCTTSHHH
T ss_pred             ccCCCeEEEecccCHhH---C--CCCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCCCCChhH
Confidence            001256776  544433   3  2568999999755 32211   11   26788889999999  87774432111111


Q ss_pred             HHHHHHHhcCC
Q 027659          189 EQMLQMWKSNF  199 (220)
Q Consensus       189 ~~f~~~~~~~f  199 (220)
                      ..+++.++..|
T Consensus       194 ~~~l~~l~~~f  204 (265)
T 2oxt_A          194 MERLSVMQRKW  204 (265)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            24555555444

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.06  E-value=9e-10  Score=94.83  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=78.2

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      ...+++++.+..       ...++.+|||+|||+|..++.+++.   +.+|+++|+ +++++.+                
T Consensus        24 P~~l~~~~~~~~-------~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------------   80 (421)
T 2ih2_A           24 PPEVVDFMVSLA-------EAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------------   80 (421)
T ss_dssp             CHHHHHHHHHHC-------CCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------------
T ss_pred             CHHHHHHHHHhh-------ccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------------
Confidence            355677776653       2234569999999999999999974   468999998 5576554                


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCC-CCC-----------------------------hHHHHHHHH
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYA-EHL-----------------------------LEPLLQTIF  167 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~-~~~-----------------------------~~~l~~~l~  167 (220)
                           .++.+...|+.+..    ..++||+|+++++|. ...                             ...++..+.
T Consensus        81 -----~~~~~~~~D~~~~~----~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~  151 (421)
T 2ih2_A           81 -----PWAEGILADFLLWE----PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAV  151 (421)
T ss_dssp             -----TTEEEEESCGGGCC----CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHH
T ss_pred             -----CCCcEEeCChhhcC----ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHH
Confidence                 14677775554332    246899999999943 211                             125677888


Q ss_pred             HhhCCCcEEEEEEEec
Q 027659          168 ALSGPKTTILLGYEIR  183 (220)
Q Consensus       168 ~~l~~~g~~~i~~~~r  183 (220)
                      ++|+|+|.+.+..+..
T Consensus       152 ~~Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          152 RLLKPGGVLVFVVPAT  167 (421)
T ss_dssp             HHEEEEEEEEEEEEGG
T ss_pred             HHhCCCCEEEEEEChH
Confidence            8999999999888763

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.06  E-value=9.8e-10  Score=95.72  Aligned_cols=106  Identities=13%  Similarity=0.020  Sum_probs=77.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh---------------CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceE
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ  126 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~---------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~  126 (220)
                      ..+.+|||.|||+|...+.+++.               +.+++++|+ +.+++.++.|+..++..          ..++.
T Consensus       170 ~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~----------~~~~~  239 (445)
T 2okc_A          170 QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----------TDRSP  239 (445)
T ss_dssp             CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----------SSCCS
T ss_pred             CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCC----------cCCCC
Confidence            35679999999999999888863               356999999 67999999999887651          01455


Q ss_pred             EEEeeeCCCCCccccCCCccEEEEecCCCCCC------------------hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          127 AVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL------------------LEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       127 ~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~------------------~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +...|....   + ...+||+|+++++|....                  ...++..+.++|+|||.+.+..+.
T Consensus       240 i~~gD~l~~---~-~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~  309 (445)
T 2okc_A          240 IVCEDSLEK---E-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPD  309 (445)
T ss_dssp             EEECCTTTS---C-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EeeCCCCCC---c-ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECC
Confidence            555443322   1 134899999999933211                  136788888999999999888764

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.06  E-value=1.1e-09  Score=90.44  Aligned_cols=78  Identities=18%  Similarity=0.143  Sum_probs=62.4

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++.+|||+|||+|.++..+++.+.+|+++|+ +++++.+++++..              ..++++...|+.+.   +.
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~--------------~~~v~vi~gD~l~~---~~  110 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL--------------YNNIEIIWGDALKV---DL  110 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH--------------CSSEEEEESCTTTS---CG
T ss_pred             CCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc--------------CCCeEEEECchhhC---Cc
Confidence            446789999999999999999999989999999 6799999998872              24788888666543   22


Q ss_pred             cCCCccEEEEecCCCC
Q 027659          141 VAPPFDYIIGTDVYAE  156 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~  156 (220)
                      ....||.|+++.+|+.
T Consensus       111 ~~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A          111 NKLDFNKVVANLPYQI  126 (295)
T ss_dssp             GGSCCSEEEEECCGGG
T ss_pred             ccCCccEEEEeCcccc
Confidence            3357999999977653

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.06  E-value=4e-11  Score=97.29  Aligned_cols=80  Identities=20%  Similarity=0.111  Sum_probs=62.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-h-------hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I-------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~-------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      .+.+|||+|||+|..++.+|..|.+|+++|. +       ++++.+++|++.|+.           ..++++...|..+.
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~-----------~~ri~~~~~d~~~~  151 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDT-----------AARINLHFGNAAEQ  151 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHH-----------HTTEEEEESCHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCC-----------ccCeEEEECCHHHH
Confidence            5679999999999999999999999999998 8       889999999998886           24588888655432


Q ss_pred             CCccccC--CCccEEEEecCCC
Q 027659          136 DHIKAVA--PPFDYIIGTDVYA  155 (220)
Q Consensus       136 ~~~~~~~--~~fD~V~~~d~y~  155 (220)
                      .. ....  ..||+|+++++|.
T Consensus       152 l~-~~~~~~~~fD~V~~dP~~~  172 (258)
T 2r6z_A          152 MP-ALVKTQGKPDIVYLDPMYP  172 (258)
T ss_dssp             HH-HHHHHHCCCSEEEECCCC-
T ss_pred             HH-hhhccCCCccEEEECCCCC
Confidence            11 0112  6899999987743

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.06  E-value=5e-10  Score=90.98  Aligned_cols=121  Identities=7%  Similarity=-0.056  Sum_probs=83.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHH--hhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW--NTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~--n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+++|||||||+|..+..+++.+.+|+++|+ +++++.+++++..  ++..          ..++++...|..+.     
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~----------~~rv~~~~~D~~~~-----  136 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKN----------NKNFTHAKQLLDLD-----  136 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHT----------CTTEEEESSGGGSC-----
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccC----------CCeEEEEechHHHH-----
Confidence            4579999999999999988876767999999 6699999887643  1220          24677776443222     


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc--hHHHHHHHHHhcCCeEEEe
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST--SVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~--~~~~~f~~~~~~~f~v~~v  204 (220)
                      . ++||+|++...    ....+++.+.++|+|||.+++.......  .......+.++..|....+
T Consensus       137 ~-~~fD~Ii~d~~----dp~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~F~~~~~  197 (262)
T 2cmg_A          137 I-KKYDLIFCLQE----PDIHRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGGVFSVAMP  197 (262)
T ss_dssp             C-CCEEEEEESSC----CCHHHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHTTCSEEEE
T ss_pred             H-hhCCEEEECCC----ChHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHhCCceEE
Confidence            1 68999998632    1234889999999999999886543221  2344455566666755433

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.05  E-value=3.9e-10  Score=95.21  Aligned_cols=96  Identities=13%  Similarity=0.062  Sum_probs=74.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+.+|||+|||+|..+..+++.  +.+++++|.+++++.+++                  ..++++...|..+.  .   
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~--~---  244 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG------------------SNNLTYVGGDMFTS--I---  244 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------BTTEEEEECCTTTC--C---
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhccc------------------CCCcEEEeccccCC--C---
Confidence            4579999999999999999976  458999999667765542                  12488888666431  2   


Q ss_pred             CCCccEEEEecC-CCCCChH--HHHHHHHHhhCC---CcEEEEEEEec
Q 027659          142 APPFDYIIGTDV-YAEHLLE--PLLQTIFALSGP---KTTILLGYEIR  183 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~--~l~~~l~~~l~~---~g~~~i~~~~r  183 (220)
                      + .||+|+++.+ ++.....  .+++.+.++|+|   ||.+++.....
T Consensus       245 p-~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~  291 (352)
T 1fp2_A          245 P-NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI  291 (352)
T ss_dssp             C-CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             C-CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence            2 3999999999 6555555  899999999999   99999886543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.05  E-value=1.9e-10  Score=98.81  Aligned_cols=93  Identities=15%  Similarity=0.154  Sum_probs=69.7

Q ss_pred             cchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh--hhhhccC
Q 027659           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN--TSRISQM  115 (220)
Q Consensus        39 W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n--~~~~~~~  115 (220)
                      +-++...++|-....         ..|.+|||||||+|..++.+|+.+++|+++|. +++++.+++|++.+  +.     
T Consensus        77 Qat~e~vA~~~a~~l---------~~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-----  142 (410)
T 3ll7_A           77 QSSGAVTSSYKSRFI---------REGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-----  142 (410)
T ss_dssp             HSCCHHHHHHGGGGS---------CTTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-----
T ss_pred             hcCHHHHHHHHHHhc---------CCCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-----
Confidence            334556666644221         13889999999999999999999999999999 66999999999987  54     


Q ss_pred             CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC
Q 027659          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV  153 (220)
Q Consensus       116 ~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~  153 (220)
                             .++++...|..+.... ....+||+|++.++
T Consensus       143 -------~~i~~i~~Da~~~L~~-~~~~~fDvV~lDPP  172 (410)
T 3ll7_A          143 -------KDVNILTGDFKEYLPL-IKTFHPDYIYVDPA  172 (410)
T ss_dssp             -------CEEEEEESCGGGSHHH-HHHHCCSEEEECCE
T ss_pred             -------CcEEEEECcHHHhhhh-ccCCCceEEEECCC
Confidence                   4788888666543110 01358999999887

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.03  E-value=5.8e-10  Score=94.83  Aligned_cols=95  Identities=17%  Similarity=0.055  Sum_probs=73.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+.+|||||||+|..+..+++.+  .+++++|++++++.+++                  ..++++...|..+.  .   
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~--~---  265 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP------------------LSGIEHVGGDMFAS--V---  265 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------CTTEEEEECCTTTC--C---
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhh------------------cCCCEEEeCCcccC--C---
Confidence            56799999999999999999875  46888899667765432                  13588888766542  1   


Q ss_pred             CCCccEEEEecC-CCCCChH--HHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAEHLLE--PLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~--~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +. ||+|+++.+ ++.....  .+++.+.++|+|||.+++....
T Consensus       266 ~~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~  308 (372)
T 1fp1_D          266 PQ-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  308 (372)
T ss_dssp             CC-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CC-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            23 999999999 6655555  8999999999999999988543

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.00  E-value=5.5e-10  Score=92.68  Aligned_cols=132  Identities=14%  Similarity=0.002  Sum_probs=77.6

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-----hhhHHHHHHHHHHhhhhhcc
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-----IEVLPLLKRNVEWNTSRISQ  114 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-----~~~l~~~~~n~~~n~~~~~~  114 (220)
                      +++.-|.+.+.+.        ...++.+|||||||+|..+..+++. .+|+++|.     +.+++.+.    .+..    
T Consensus        66 R~a~KL~~i~~~~--------~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~----~~~~----  128 (305)
T 2p41_A           66 RGSAKLRWFVERN--------LVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP----MSTY----  128 (305)
T ss_dssp             THHHHHHHHHHTT--------SSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC----CCST----
T ss_pred             cHHHHHHHHHHcC--------CCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH----hhhc----
Confidence            3455565544432        2335789999999999999999988 58999997     32321110    0000    


Q ss_pred             CCCCCCCCCceEEEEe-eeCCCCCccccCCCccEEEEecCCCCCC----hH---HHHHHHHHhhCCCcEEEEEEEecCch
Q 027659          115 MNPGSDLLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVYAEHL----LE---PLLQTIFALSGPKTTILLGYEIRSTS  186 (220)
Q Consensus       115 ~~~~~~~~~~v~~~~l-dw~~~~~~~~~~~~fD~V~~~d~y~~~~----~~---~l~~~l~~~l~~~g~~~i~~~~r~~~  186 (220)
                            ...++.+... |...   .  ...+||+|++.-..+...    ..   .++..+.++|+|||.+++........
T Consensus       129 ------~~~~v~~~~~~D~~~---l--~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~~~~  197 (305)
T 2p41_A          129 ------GWNLVRLQSGVDVFF---I--PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNPYMS  197 (305)
T ss_dssp             ------TGGGEEEECSCCTTT---S--CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCCCSH
T ss_pred             ------CCCCeEEEecccccc---C--CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCc
Confidence                  0135777764 3322   2  246899999854332111    11   35677788999999887743322112


Q ss_pred             HHHHHHHHHhcCC
Q 027659          187 VHEQMLQMWKSNF  199 (220)
Q Consensus       187 ~~~~f~~~~~~~f  199 (220)
                      ....++..++..|
T Consensus       198 ~~~~~l~~l~~~f  210 (305)
T 2p41_A          198 SVIEKMEALQRKH  210 (305)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHc
Confidence            2345556555444

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.00  E-value=1.2e-09  Score=92.93  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=73.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+.+|||||||+|..+..+++.  +.+++++|++++++.+++                  ..++++...|..+.  .   
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~--~---  259 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPA------------------FSGVEHLGGDMFDG--V---  259 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------CTTEEEEECCTTTC--C---
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhh------------------cCCCEEEecCCCCC--C---
Confidence            5679999999999999999986  457999999777665432                  24689998776542  2   


Q ss_pred             CCCccEEEEecC-CCCC--ChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAEH--LLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~--~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +.. |+|+++.+ ++..  ....+++.+.++|+|||.+++....
T Consensus       260 p~~-D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  302 (368)
T 3reo_A          260 PKG-DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYI  302 (368)
T ss_dssp             CCC-SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             CCC-CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            223 99999999 6443  3568899999999999999997643

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.99  E-value=1.5e-09  Score=91.73  Aligned_cols=95  Identities=14%  Similarity=0.009  Sum_probs=73.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+.+|||+|||+|..+..+++..  .+++++|.+++++.++.                  ..++++...|..+.  .   
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~d~~~~--~---  249 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG------------------NENLNFVGGDMFKS--I---  249 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCC------------------CSSEEEEECCTTTC--C---
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhccc------------------CCCcEEEeCccCCC--C---
Confidence            45799999999999999999874  47999999766654432                  12488888766541  1   


Q ss_pred             CCCccEEEEecC-CCCCChH--HHHHHHHHhhCC---CcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAEHLLE--PLLQTIFALSGP---KTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~--~l~~~l~~~l~~---~g~~~i~~~~  182 (220)
                      + .||+|+++.+ ++.....  .+++.+.++|+|   ||.+++....
T Consensus       250 ~-~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~  295 (358)
T 1zg3_A          250 P-SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDIS  295 (358)
T ss_dssp             C-CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECE
T ss_pred             C-CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEec
Confidence            2 4999999999 6655544  999999999999   9999987644

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.98  E-value=9.3e-10  Score=89.03  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=60.6

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ...+.+|||||||+|.++..+++.+.+|+++|+ +++++.+++++..              ..++++...|..+......
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~--------------~~~v~~i~~D~~~~~~~~~   92 (255)
T 3tqs_A           27 PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQ--------------QKNITIYQNDALQFDFSSV   92 (255)
T ss_dssp             CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTT--------------CTTEEEEESCTTTCCGGGS
T ss_pred             CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhh--------------CCCcEEEEcchHhCCHHHh
Confidence            346789999999999999999999999999999 6699999988754              1478888866655431111


Q ss_pred             -cCCCccEEEEecCCCC
Q 027659          141 -VAPPFDYIIGTDVYAE  156 (220)
Q Consensus       141 -~~~~fD~V~~~d~y~~  156 (220)
                       ..++|| |++|.+|+.
T Consensus        93 ~~~~~~~-vv~NlPY~i  108 (255)
T 3tqs_A           93 KTDKPLR-VVGNLPYNI  108 (255)
T ss_dssp             CCSSCEE-EEEECCHHH
T ss_pred             ccCCCeE-EEecCCccc
Confidence             134688 888888543

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.98  E-value=9e-09  Score=85.50  Aligned_cols=91  Identities=18%  Similarity=0.112  Sum_probs=66.7

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQM  115 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~  115 (220)
                      .++.+++..+.           ...|.+|||+|||+|..++.+|.. +  .+|+++|. +++++.+++|++.++.     
T Consensus        89 ~~s~l~~~~l~-----------~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-----  152 (309)
T 2b9e_A           89 RASCLPAMLLD-----------PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-----  152 (309)
T ss_dssp             TGGGHHHHHHC-----------CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHhC-----------CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----
Confidence            45666666553           236789999999999999999874 2  57999998 6699999999998875     


Q ss_pred             CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC
Q 027659          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV  153 (220)
Q Consensus       116 ~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~  153 (220)
                             .++.+...|+.+.........+||.|++..+
T Consensus       153 -------~~v~~~~~D~~~~~~~~~~~~~fD~Vl~D~P  183 (309)
T 2b9e_A          153 -------SCCELAEEDFLAVSPSDPRYHEVHYILLDPS  183 (309)
T ss_dssp             -------CSEEEEECCGGGSCTTCGGGTTEEEEEECCC
T ss_pred             -------CeEEEEeCChHhcCccccccCCCCEEEEcCC
Confidence                   4688888776543221111147999998544

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.96  E-value=2.4e-09  Score=90.89  Aligned_cols=95  Identities=16%  Similarity=0.123  Sum_probs=73.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+.+|||||||+|..+..+++.  +.+++++|++++++.++.                  ..++++...|..++  .  +
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------------------~~~v~~~~~D~~~~--~--p  258 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQ------------------FPGVTHVGGDMFKE--V--P  258 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCC------------------CTTEEEEECCTTTC--C--C
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhh------------------cCCeEEEeCCcCCC--C--C
Confidence            5679999999999999999975  457999999777665432                  24789999776542  2  2


Q ss_pred             CCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       .. |+|+++.+ ++.  +....+++.+.++|+|||.++|....
T Consensus       259 -~~-D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~  300 (364)
T 3p9c_A          259 -SG-DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCI  300 (364)
T ss_dssp             -CC-SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECC
T ss_pred             -CC-CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence             23 99999999 644  44678999999999999999997654

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.95  E-value=1.6e-09  Score=92.51  Aligned_cols=93  Identities=17%  Similarity=0.232  Sum_probs=68.7

Q ss_pred             CCCcEEEeCCc------ccHHHHHHHHh---CCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeC
Q 027659           64 KGKRVIELGAG------CGVAGFGMALL---GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWG  133 (220)
Q Consensus        64 ~~~~vLELGcG------~G~~~l~la~~---g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~  133 (220)
                      ++.+|||||||      +|..++.+++.   +++|+++|++ ++.        .+             ..++++...|..
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~--------~~-------------~~rI~fv~GDa~  274 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH--------VD-------------ELRIRTIQGDQN  274 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG--------GC-------------BTTEEEEECCTT
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh--------hc-------------CCCcEEEEeccc
Confidence            56799999999      77777777653   6789999994 451        11             357899886654


Q ss_pred             CCCCcccc------CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          134 NEDHIKAV------APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       134 ~~~~~~~~------~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      +   .+..      .++||+|++...++.......++.+.++|+|||.+++..
T Consensus       275 d---lpf~~~l~~~d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~D  324 (419)
T 3sso_A          275 D---AEFLDRIARRYGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIED  324 (419)
T ss_dssp             C---HHHHHHHHHHHCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             c---cchhhhhhcccCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEe
Confidence            4   2222      478999998655444567788999999999999999974

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.95  E-value=9.8e-09  Score=83.69  Aligned_cols=78  Identities=18%  Similarity=0.237  Sum_probs=60.1

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++ +|||+|||+|.++..+++.+++|+++|+ +++++.+++++..               .++++...|..+... +.
T Consensus        45 ~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~---------------~~v~vi~~D~l~~~~-~~  107 (271)
T 3fut_A           45 PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG---------------LPVRLVFQDALLYPW-EE  107 (271)
T ss_dssp             CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT---------------SSEEEEESCGGGSCG-GG
T ss_pred             CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC---------------CCEEEEECChhhCCh-hh
Confidence            3457 9999999999999999999999999999 6699999887641               367888866544321 11


Q ss_pred             cCCCccEEEEecCCCCC
Q 027659          141 VAPPFDYIIGTDVYAEH  157 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~  157 (220)
                       ...+|.|++|.+|+..
T Consensus       108 -~~~~~~iv~NlPy~is  123 (271)
T 3fut_A          108 -VPQGSLLVANLPYHIA  123 (271)
T ss_dssp             -SCTTEEEEEEECSSCC
T ss_pred             -ccCccEEEecCccccc
Confidence             1368999999886654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.94  E-value=1.5e-09  Score=82.33  Aligned_cols=110  Identities=12%  Similarity=0.052  Sum_probs=77.7

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ...|.+|||||||.             | .+|. ++|++.++++...                ++++...|..+......
T Consensus        10 ~~~g~~vL~~~~g~-------------v-~vD~s~~ml~~a~~~~~~----------------~~~~~~~d~~~~~~~~~   59 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-------------S-PVEALKGLVDKLQALTGN----------------EGRVSVENIKQLLQSAH   59 (176)
T ss_dssp             CCTTSEEEEEECTT-------------S-CHHHHHHHHHHHHHHTTT----------------TSEEEEEEGGGGGGGCC
T ss_pred             CCCCCEEEEecCCc-------------e-eeeCCHHHHHHHHHhccc----------------CcEEEEechhcCccccC
Confidence            34688999999996             2 3898 5699988876421                36777777654321111


Q ss_pred             cCCCccEEEEecC-CCC-CChHHHHHHHHHhhCCCcEEEEEEEecCc-------hHHHHHHHHHh-cCCeEE
Q 027659          141 VAPPFDYIIGTDV-YAE-HLLEPLLQTIFALSGPKTTILLGYEIRST-------SVHEQMLQMWK-SNFNVK  202 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~-~~~~~l~~~l~~~l~~~g~~~i~~~~r~~-------~~~~~f~~~~~-~~f~v~  202 (220)
                      .+++||+|+++.+ ++. .....+++.+.++|+|||.+++..+....       .....+.+.++ .+| ++
T Consensus        60 ~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf-i~  130 (176)
T 2ld4_A           60 KESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL-VE  130 (176)
T ss_dssp             CSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC-EE
T ss_pred             CCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC-cE
Confidence            4678999999988 655 77899999999999999999997664221       11355666665 478 54

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.93  E-value=1.2e-08  Score=81.82  Aligned_cols=90  Identities=13%  Similarity=0.071  Sum_probs=63.4

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      ...+++.+.+..       ....+.+|||+|||+|.++..++..+.+|+++|+ +++++.+++|+..             
T Consensus        15 d~~~~~~i~~~~-------~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-------------   74 (244)
T 1qam_A           15 SKHNIDKIMTNI-------RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD-------------   74 (244)
T ss_dssp             CHHHHHHHHTTC-------CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT-------------
T ss_pred             CHHHHHHHHHhC-------CCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhcc-------------
Confidence            344555555442       2346789999999999999999999999999999 6699999888652             


Q ss_pred             CCCceEEEEeeeCCCCCcccc-CCCccEEEEecCCCC
Q 027659          121 LLGSIQAVELDWGNEDHIKAV-APPFDYIIGTDVYAE  156 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~-~~~fD~V~~~d~y~~  156 (220)
                       ..++++...|..+..   .. ...| .|+++.+|+.
T Consensus        75 -~~~v~~~~~D~~~~~---~~~~~~~-~vv~nlPy~~  106 (244)
T 1qam_A           75 -HDNFQVLNKDILQFK---FPKNQSY-KIFGNIPYNI  106 (244)
T ss_dssp             -CCSEEEECCCGGGCC---CCSSCCC-EEEEECCGGG
T ss_pred             -CCCeEEEEChHHhCC---cccCCCe-EEEEeCCccc
Confidence             136888886665432   11 1234 5777766653

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.90  E-value=4.5e-09  Score=85.54  Aligned_cols=107  Identities=12%  Similarity=0.080  Sum_probs=74.9

Q ss_pred             CcEEEeCCcc---cHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc-
Q 027659           66 KRVIELGAGC---GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  138 (220)
Q Consensus        66 ~~vLELGcG~---G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~-  138 (220)
                      .+|||||||+   |.....+.+.  +++|+++|. +.|+..++.++..+.            ..++++...|..+.... 
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~------------~~~~~~v~aD~~~~~~~l  147 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP------------EGRTAYVEADMLDPASIL  147 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS------------SSEEEEEECCTTCHHHHH
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC------------CCcEEEEEecccChhhhh
Confidence            5799999997   3444333333  578999999 679999988765332            24688998777664211 


Q ss_pred             --cccCCCcc-----EEEEecC-CCCCC---hHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          139 --KAVAPPFD-----YIIGTDV-YAEHL---LEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       139 --~~~~~~fD-----~V~~~d~-y~~~~---~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                        +.....||     .|+++.+ ++...   ...+++.+.+.|+|||.+++++....
T Consensus       148 ~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d  204 (277)
T 3giw_A          148 DAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE  204 (277)
T ss_dssp             TCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred             cccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence              00023344     5778888 55444   56899999999999999999987654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.88  E-value=7.3e-11  Score=94.83  Aligned_cols=77  Identities=16%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..+.+|||+|||+|.++..+++.+.+|+++|+ +++++.+++|+..              ..++++...|+.+..   ..
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~--------------~~~v~~~~~D~~~~~---~~   90 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--------------NTRVTLIHQDILQFQ---FP   90 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--------------CSEEEECCSCCTTTT---CC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc--------------CCceEEEECChhhcC---cc
Confidence            36779999999999999999999989999999 5688888776541              246788776665432   12


Q ss_pred             -CCCccEEEEecCCCCC
Q 027659          142 -APPFDYIIGTDVYAEH  157 (220)
Q Consensus       142 -~~~fD~V~~~d~y~~~  157 (220)
                       .++| .|+++.+|+..
T Consensus        91 ~~~~f-~vv~n~Py~~~  106 (245)
T 1yub_A           91 NKQRY-KIVGNIPYHLS  106 (245)
T ss_dssp             CSSEE-EEEEECCSSSC
T ss_pred             cCCCc-EEEEeCCcccc
Confidence             2568 78888776543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.86  E-value=3.4e-09  Score=95.47  Aligned_cols=101  Identities=12%  Similarity=0.016  Sum_probs=75.7

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh---CC---eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL---GC---NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~---g~---~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ..+++.|||+|||+|.++..+++.   ++   +|++++.+.+...+++.+..|+.           ..+|++...|..+.
T Consensus       355 ~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~~a~~~v~~N~~-----------~dkVtVI~gd~eev  423 (637)
T 4gqb_A          355 DTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAVVTLENWQFEEW-----------GSQVTVVSSDMREW  423 (637)
T ss_dssp             TTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHHHHHHHHHHHTT-----------GGGEEEEESCTTTC
T ss_pred             cCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHHHHhccC-----------CCeEEEEeCcceec
Confidence            445678999999999995555443   32   58999987777788888999987           57899999555443


Q ss_pred             CCccccCCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEE
Q 027659          136 DHIKAVAPPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       136 ~~~~~~~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      .    .++++|+||+--+ |.  .+....++....++|+|||.++
T Consensus       424 ~----LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          424 V----APEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             C----CSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             c----CCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            2    3579999999777 54  2335577788888999988654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.85  E-value=1.6e-08  Score=90.16  Aligned_cols=109  Identities=12%  Similarity=-0.069  Sum_probs=76.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--------------------CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--------------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLL  122 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--------------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~  122 (220)
                      .+.+|||.+||+|.+.+.+++.                    ...++++|+ +.+++.++.|+..++....       ..
T Consensus       169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~-------~~  241 (541)
T 2ar0_A          169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGN-------LD  241 (541)
T ss_dssp             TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCB-------GG
T ss_pred             CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCcc-------cc
Confidence            5779999999999998888753                    136999999 6699999999988765100       00


Q ss_pred             CceEEEEeeeCCCCCcc-ccCCCccEEEEecCCCCCC---------------hHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          123 GSIQAVELDWGNEDHIK-AVAPPFDYIIGTDVYAEHL---------------LEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       123 ~~v~~~~ldw~~~~~~~-~~~~~fD~V~~~d~y~~~~---------------~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      .++.+..   ++....+ ....+||+|++|++|....               ...++..+.++|+|||++.+..+.
T Consensus       242 ~~~~I~~---gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~  314 (541)
T 2ar0_A          242 HGGAIRL---GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPD  314 (541)
T ss_dssp             GTBSEEE---SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             ccCCeEe---CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecC
Confidence            0144544   3322211 1246899999999943221               236888888899999999888774

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.83  E-value=1.6e-08  Score=83.10  Aligned_cols=108  Identities=17%  Similarity=0.113  Sum_probs=70.8

Q ss_pred             CCCCCcEEEeCC------cccHHHHHHHH-hC--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEE-EEee
Q 027659           62 KLKGKRVIELGA------GCGVAGFGMAL-LG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-VELD  131 (220)
Q Consensus        62 ~~~~~~vLELGc------G~G~~~l~la~-~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~-~~ld  131 (220)
                      ..++.+||||||      |+|.  ..+++ .+  ++|+++|+++.            .            .++++ ...|
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~------------v------------~~v~~~i~gD  114 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF------------V------------SDADSTLIGD  114 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC------------B------------CSSSEEEESC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC------------C------------CCCEEEEECc
Confidence            346789999999      4466  43443 33  68999999543            1            14566 7766


Q ss_pred             eCCCCCccccCCCccEEEEecC-CC-----------CCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-C
Q 027659          132 WGNEDHIKAVAPPFDYIIGTDV-YA-----------EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-N  198 (220)
Q Consensus       132 w~~~~~~~~~~~~fD~V~~~d~-y~-----------~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~  198 (220)
                      +.+..    ..++||+|+++.. ..           ...++.+++.+.++|+|||.+++.......  ...+.+.+++ +
T Consensus       115 ~~~~~----~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~--~~~l~~~l~~~G  188 (290)
T 2xyq_A          115 CATVH----TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW--NADLYKLMGHFS  188 (290)
T ss_dssp             GGGCC----CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC--CHHHHHHHTTEE
T ss_pred             cccCC----ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCC--HHHHHHHHHHcC
Confidence            65432    2368999998643 11           122457889999999999999986543332  2466666665 4


Q ss_pred             CeE
Q 027659          199 FNV  201 (220)
Q Consensus       199 f~v  201 (220)
                      |..
T Consensus       189 F~~  191 (290)
T 2xyq_A          189 WWT  191 (290)
T ss_dssp             EEE
T ss_pred             CcE
Confidence            754

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.81  E-value=8.6e-08  Score=85.31  Aligned_cols=129  Identities=9%  Similarity=0.029  Sum_probs=87.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-----CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..+.+|+|.+||+|.+.+.+++.     ...++++|+ +.++..++.|+..++..          ..++.+...|.-...
T Consensus       220 ~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~----------~~~~~I~~gDtL~~d  289 (542)
T 3lkd_A          220 KQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP----------IENQFLHNADTLDED  289 (542)
T ss_dssp             CTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEESCTTTSC
T ss_pred             CCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC----------cCccceEecceeccc
Confidence            36779999999999888888765     357999999 66999999999887751          134556654432221


Q ss_pred             Ccc-ccCCCccEEEEecCCCCCC-----------h-------------HHHHHHHHHhhC-CCcEEEEEEEecC---chH
Q 027659          137 HIK-AVAPPFDYIIGTDVYAEHL-----------L-------------EPLLQTIFALSG-PKTTILLGYEIRS---TSV  187 (220)
Q Consensus       137 ~~~-~~~~~fD~V~~~d~y~~~~-----------~-------------~~l~~~l~~~l~-~~g~~~i~~~~r~---~~~  187 (220)
                       .+ ....+||+|++||||....           +             -.++..+.++|+ ++|++.+..+...   ...
T Consensus       290 -~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~  368 (542)
T 3lkd_A          290 -WPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNA  368 (542)
T ss_dssp             -SCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTH
T ss_pred             -ccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCch
Confidence             01 2356899999999943210           0             137888888999 9999988877532   122


Q ss_pred             HHHHHHHHhcCCeEE
Q 027659          188 HEQMLQMWKSNFNVK  202 (220)
Q Consensus       188 ~~~f~~~~~~~f~v~  202 (220)
                      ...+.+.+-+.+.++
T Consensus       369 ~~~iRk~Lle~~~l~  383 (542)
T 3lkd_A          369 EGTIRKALLEEGAID  383 (542)
T ss_dssp             HHHHHHHHHHTTCEE
T ss_pred             hHHHHHHHHhCCcee
Confidence            455666655544443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.80  E-value=7.1e-08  Score=88.47  Aligned_cols=131  Identities=12%  Similarity=0.043  Sum_probs=85.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC-----CeEEEecc-hhhHHHH--HHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG-----CNVITTDQ-IEVLPLL--KRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g-----~~v~~~D~-~~~l~~~--~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      .+.+|||.|||+|.+.+.++...     .+++++|+ +.+++.+  +.|+..|.....        .....+...++...
T Consensus       321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG--------i~~~~I~~dD~L~~  392 (878)
T 3s1s_A          321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS--------NNAPTITGEDVCSL  392 (878)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT--------TBCCEEECCCGGGC
T ss_pred             CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC--------CCcceEEecchhcc
Confidence            57799999999999999998753     35999999 6699998  777766544210        11123333222221


Q ss_pred             CCccccCCCccEEEEecCCCC-C-----------------------------ChHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          136 DHIKAVAPPFDYIIGTDVYAE-H-----------------------------LLEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       136 ~~~~~~~~~fD~V~~~d~y~~-~-----------------------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      .  .....+||+|++|++|.. .                             ....++..+.++|++||.+.+..+..--
T Consensus       393 ~--~~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~L  470 (878)
T 3s1s_A          393 N--PEDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYL  470 (878)
T ss_dssp             C--GGGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHH
T ss_pred             c--ccccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHh
Confidence            1  113468999999999632 1                             0234677778889999999988875322


Q ss_pred             ----hHHHHHHHHHhcCCeEEEe
Q 027659          186 ----SVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       186 ----~~~~~f~~~~~~~f~v~~v  204 (220)
                          .....+.+.+-+.+.+..|
T Consensus       471 f~sg~~~kkLRk~LLe~~~I~aI  493 (878)
T 3s1s_A          471 TAQGNESKAFREFLVGNFGLEHI  493 (878)
T ss_dssp             HCCSHHHHHHHHHHTTTTCEEEE
T ss_pred             ccCChHHHHHHHHHHhCCCeEEE
Confidence                1245666666666665544

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.79  E-value=5.4e-09  Score=84.59  Aligned_cols=86  Identities=17%  Similarity=0.230  Sum_probs=57.4

Q ss_pred             CcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~  144 (220)
                      .+|||+|||+|..++.+|..|++|+++|. +.+...+++|++..........   ....++++...|..+.  +......
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~---~l~~~i~~~~~D~~~~--L~~~~~~  164 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGG---WLQERLQLIHASSLTA--LTDITPR  164 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHH---HHHHHEEEEESCHHHH--STTCSSC
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhh---hhhcCEEEEECCHHHH--HHhCccc
Confidence            79999999999999999999999999998 6687777777654321000000   0013678877544321  1112347


Q ss_pred             ccEEEEecCCCC
Q 027659          145 FDYIIGTDVYAE  156 (220)
Q Consensus       145 fD~V~~~d~y~~  156 (220)
                      ||+|+..++|..
T Consensus       165 fDvV~lDP~y~~  176 (258)
T 2oyr_A          165 PQVVYLDPMFPH  176 (258)
T ss_dssp             CSEEEECCCCCC
T ss_pred             CCEEEEcCCCCC
Confidence            999999877543

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.75  E-value=4.1e-08  Score=87.47  Aligned_cols=123  Identities=11%  Similarity=0.004  Sum_probs=81.0

Q ss_pred             cEEEeCCcccHHHHHHHHh-----------------CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEE
Q 027659           67 RVIELGAGCGVAGFGMALL-----------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV  128 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la~~-----------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~  128 (220)
                      +|||.+||+|.+.+.+++.                 ...++++|+ +.++..++.|+..++.           ..++.+.
T Consensus       247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi-----------~~~i~i~  315 (544)
T 3khk_A          247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI-----------DFNFGKK  315 (544)
T ss_dssp             EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC-----------CCBCCSS
T ss_pred             eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC-----------Cccccee
Confidence            8999999999887777532                 346999999 6699999999998875           1223223


Q ss_pred             EeeeCCCCCccccCCCccEEEEecCCCCCC------------------------------hHHHHHHHHHhhCCCcEEEE
Q 027659          129 ELDWGNEDHIKAVAPPFDYIIGTDVYAEHL------------------------------LEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       129 ~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~------------------------------~~~l~~~l~~~l~~~g~~~i  178 (220)
                      ..|.-...  .....+||+|++|++|....                              --.++..+.++|+|||++.+
T Consensus       316 ~gDtL~~~--~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~ai  393 (544)
T 3khk_A          316 NADSFLDD--QHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMAL  393 (544)
T ss_dssp             SCCTTTSC--SCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEE
T ss_pred             ccchhcCc--ccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEE
Confidence            32221111  11246899999999954310                              01578888899999999888


Q ss_pred             EEEec----CchHHHHHHHHHhcCCeEE
Q 027659          179 GYEIR----STSVHEQMLQMWKSNFNVK  202 (220)
Q Consensus       179 ~~~~r----~~~~~~~f~~~~~~~f~v~  202 (220)
                      ..+..    .......+.+.+-+.+.++
T Consensus       394 VlP~g~L~~~~~~~~~iRk~Lle~~~l~  421 (544)
T 3khk_A          394 LLANGSMSSNTNNEGEIRKTLVEQDLVE  421 (544)
T ss_dssp             EEETHHHHCCGGGHHHHHHHHHHTTCEE
T ss_pred             EecchhhhcCcchHHHHHHHHHhCCcHh
Confidence            87642    2123456666555544443

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.72  E-value=5.3e-08  Score=78.41  Aligned_cols=78  Identities=15%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++.+|||+|||+|.++..+++.+ .+|+++|+ +++++.++++   .             ..++++...|..+.. .+
T Consensus        29 ~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~---~-------------~~~v~~i~~D~~~~~-~~   91 (249)
T 3ftd_A           29 IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI---G-------------DERLEVINEDASKFP-FC   91 (249)
T ss_dssp             CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS---C-------------CTTEEEECSCTTTCC-GG
T ss_pred             CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc---c-------------CCCeEEEEcchhhCC-hh
Confidence            3467899999999999999999986 78999999 5699988876   1             246788886654432 11


Q ss_pred             ccCCCccEEEEecCCCCC
Q 027659          140 AVAPPFDYIIGTDVYAEH  157 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~  157 (220)
                      .....| .|++|.+|+..
T Consensus        92 ~~~~~~-~vv~NlPy~i~  108 (249)
T 3ftd_A           92 SLGKEL-KVVGNLPYNVA  108 (249)
T ss_dssp             GSCSSE-EEEEECCTTTH
T ss_pred             HccCCc-EEEEECchhcc
Confidence            111223 67777667643

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.67  E-value=3.3e-08  Score=89.36  Aligned_cols=101  Identities=17%  Similarity=0.098  Sum_probs=70.3

Q ss_pred             CCCcEEEeCCcccHHHHHH---HH-hC---------C--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEE
Q 027659           64 KGKRVIELGAGCGVAGFGM---AL-LG---------C--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA  127 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~l---a~-~g---------~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~  127 (220)
                      +++.|||+|||+|.++..+   ++ .+         .  +|+++|. +.++..+++... |+.           ..+|++
T Consensus       409 ~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~-----------~d~VtV  476 (745)
T 3ua3_A          409 KTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTW-----------KRRVTI  476 (745)
T ss_dssp             SEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTT-----------TTCSEE
T ss_pred             CCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCC-----------CCeEEE
Confidence            3568999999999997543   32 23         2  7999998 446655555444 766           467999


Q ss_pred             EEeeeCCCCCcc---ccCCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEE
Q 027659          128 VELDWGNEDHIK---AVAPPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       128 ~~ldw~~~~~~~---~~~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      ...+..+.. ++   ...++.|+||+--+ |+  .+..+..+..+.++|+|+|.++
T Consensus       477 I~gd~eev~-lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          477 IESDMRSLP-GIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             EESCGGGHH-HHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             EeCchhhcc-cccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence            985443322 10   11579999999888 65  3556788888899999998655

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.65  E-value=6.8e-08  Score=79.06  Aligned_cols=79  Identities=18%  Similarity=0.140  Sum_probs=57.4

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCe----EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCN----VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~----v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+.+|||||||+|.++..+++.+.+    |+++|+ +++++.++++.   .             .++++...|..+..
T Consensus        40 ~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~---~-------------~~v~~i~~D~~~~~  103 (279)
T 3uzu_A           40 PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF---G-------------ELLELHAGDALTFD  103 (279)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH---G-------------GGEEEEESCGGGCC
T ss_pred             CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc---C-------------CCcEEEECChhcCC
Confidence            346789999999999999999998877    999999 66999999883   1             26788886665443


Q ss_pred             CccccC-C--CccEEEEecCCCC
Q 027659          137 HIKAVA-P--PFDYIIGTDVYAE  156 (220)
Q Consensus       137 ~~~~~~-~--~fD~V~~~d~y~~  156 (220)
                      ...... .  ..+.|++|.+|+.
T Consensus       104 ~~~~~~~~~~~~~~vv~NlPY~i  126 (279)
T 3uzu_A          104 FGSIARPGDEPSLRIIGNLPYNI  126 (279)
T ss_dssp             GGGGSCSSSSCCEEEEEECCHHH
T ss_pred             hhHhcccccCCceEEEEccCccc
Confidence            111111 1  3457888877543

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.64  E-value=2.6e-08  Score=82.37  Aligned_cols=78  Identities=18%  Similarity=0.228  Sum_probs=58.9

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~  138 (220)
                      ..+.+|||+|||+|..++.+++.  +.+|+++|. +++++.+++|++.++             .++++...|+.+... +
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-------------~~v~~v~~d~~~l~~~l   91 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------------DRVSLFKVSYREADFLL   91 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------------TTEEEEECCGGGHHHHH
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEECCHHHHHHHH
Confidence            36789999999999999999987  468999999 679999999987764             378888866544321 1


Q ss_pred             cc-cCCCccEEEEecC
Q 027659          139 KA-VAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~~-~~~~fD~V~~~d~  153 (220)
                      .. ...+||.|++...
T Consensus        92 ~~~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           92 KTLGIEKVDGILMDLG  107 (301)
T ss_dssp             HHTTCSCEEEEEEECS
T ss_pred             HhcCCCCCCEEEEcCc
Confidence            11 1157999987653

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.62  E-value=2.6e-08  Score=80.36  Aligned_cols=79  Identities=11%  Similarity=0.021  Sum_probs=54.9

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCe--EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCN--VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~--v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..+.+|||+|||+|.++. +++ +.+  |+++|+ +++++.+++++..+              .++++...|........
T Consensus        20 ~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~--------------~~v~~i~~D~~~~~~~~   83 (252)
T 1qyr_A           20 QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG--------------PKLTIYQQDAMTFNFGE   83 (252)
T ss_dssp             CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG--------------GGEEEECSCGGGCCHHH
T ss_pred             CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC--------------CceEEEECchhhCCHHH
Confidence            467799999999999999 654 677  999999 66999998776432              26788876654432110


Q ss_pred             cc--CCCccEEEEecCCCCC
Q 027659          140 AV--APPFDYIIGTDVYAEH  157 (220)
Q Consensus       140 ~~--~~~fD~V~~~d~y~~~  157 (220)
                      ..  ....+.|++|.+|+..
T Consensus        84 ~~~~~~~~~~vvsNlPY~i~  103 (252)
T 1qyr_A           84 LAEKMGQPLRVFGNLPYNIS  103 (252)
T ss_dssp             HHHHHTSCEEEEEECCTTTH
T ss_pred             hhcccCCceEEEECCCCCcc
Confidence            00  1245788888776643

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.48  E-value=1.3e-06  Score=68.02  Aligned_cols=101  Identities=15%  Similarity=0.075  Sum_probs=67.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC------
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE------  135 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~------  135 (220)
                      +.++|||+|||  .-++.+|+. +.+|+.+|. ++..+.+++|++.++..         ...+|++...+.++.      
T Consensus        30 ~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~---------~~~~I~~~~gda~~~~~wg~p   98 (202)
T 3cvo_A           30 EAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA---------EGTEVNIVWTDIGPTGDWGHP   98 (202)
T ss_dssp             HCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC---------TTCEEEEEECCCSSBCGGGCB
T ss_pred             CCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC---------CCCceEEEEeCchhhhccccc
Confidence            34699999985  677888876 678999998 66899999999987640         024677777553321      


Q ss_pred             C------Ccc-------cc--CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          136 D------HIK-------AV--APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       136 ~------~~~-------~~--~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      .      .++       ..  .++||+|+.-.-+.    ...+..+..+|+|||++++-
T Consensus        99 ~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k~----~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A           99 VSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRFR----VGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             SSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSSH----HHHHHHHHHHCSSCEEEEET
T ss_pred             ccchhhhhHHHHhhhhhccccCCCCCEEEEeCCCc----hhHHHHHHHhcCCCeEEEEe
Confidence            1      011       11  26899999654321    24444455889999998653

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.46  E-value=7.5e-08  Score=78.32  Aligned_cols=120  Identities=8%  Similarity=-0.003  Sum_probs=92.2

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-CCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-DHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~-~~~~~  140 (220)
                      +.+..+||+=+|+|.+|+.+.+.+.+++++|. ++.++.+++|++.              ..++++...|-... .....
T Consensus        90 ~n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~--------------~~~~~V~~~D~~~~L~~l~~  155 (283)
T 2oo3_A           90 INLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF--------------NKKVYVNHTDGVSKLNALLP  155 (283)
T ss_dssp             HSSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT--------------TSCEEEECSCHHHHHHHHCS
T ss_pred             hcCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc--------------CCcEEEEeCcHHHHHHHhcC
Confidence            35668999999999999999987777999998 7799999988864              13677777552111 11112


Q ss_pred             cCCCccEEEEecCCC-CCChHHHHHHHHHh--hCCCcEEEEEEEecCchHHHHHHHHHh
Q 027659          141 VAPPFDYIIGTDVYA-EHLLEPLLQTIFAL--SGPKTTILLGYEIRSTSVHEQMLQMWK  196 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~-~~~~~~l~~~l~~~--l~~~g~~~i~~~~r~~~~~~~f~~~~~  196 (220)
                      ...+||+|+.-++|. ...+..+++.+.+.  +.++|++++=++.......+.|.+.++
T Consensus       156 ~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~  214 (283)
T 2oo3_A          156 PPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMR  214 (283)
T ss_dssp             CTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHH
Confidence            245799999888887 56788888888775  679999999999888777788888875

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.37  E-value=6.7e-07  Score=72.29  Aligned_cols=145  Identities=15%  Similarity=0.048  Sum_probs=86.6

Q ss_pred             cccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CC-eEEEecch-hhHHHHHHHHHHhh
Q 027659           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQI-EVLPLLKRNVEWNT  109 (220)
Q Consensus        33 ~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~-~v~~~D~~-~~l~~~~~n~~~n~  109 (220)
                      .+|..+=+++.-|.+...+.        ....+.+|||||||+|-.+.+++.. ++ +|++.|+. ++ . .+  .. ..
T Consensus        51 ~~~~YrSRaA~KL~ei~ek~--------~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl-~-~~--pi-~~  117 (277)
T 3evf_A           51 DTGVAVSRGTAKLRWFHERG--------YVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDG-H-EK--PM-NV  117 (277)
T ss_dssp             SSCBCSSTHHHHHHHHHHTT--------SSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT-C-CC--CC-CC
T ss_pred             cCCCccccHHHHHHHHHHhC--------CCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccC-c-cc--cc-cc
Confidence            34666777899998888764        2335678999999999999998865 55 47777763 21 0 00  00 00


Q ss_pred             hhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC-----h--HHHHHHHHHhhCCC-cEEEEEEE
Q 027659          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL-----L--EPLLQTIFALSGPK-TTILLGYE  181 (220)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~-----~--~~l~~~l~~~l~~~-g~~~i~~~  181 (220)
                      .         ....++.....+.   +.......+||+|++.-..+...     .  -.|++.+.++|+|| |.+++  +
T Consensus       118 ~---------~~g~~ii~~~~~~---dv~~l~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~--K  183 (277)
T 3evf_A          118 Q---------SLGWNIITFKDKT---DIHRLEPVKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV--K  183 (277)
T ss_dssp             C---------BTTGGGEEEECSC---CTTTSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE--E
T ss_pred             C---------cCCCCeEEEeccc---eehhcCCCCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE--E
Confidence            0         0011223322111   11222457899999843344221     1  13567778889999 99887  4


Q ss_pred             ecC--chHHHHHHHHHhcCCeEEEe
Q 027659          182 IRS--TSVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       182 ~r~--~~~~~~f~~~~~~~f~v~~v  204 (220)
                      .-.  ...+..|++.++..|.-..+
T Consensus       184 Vf~pyg~~~~~l~~~lk~~F~~V~~  208 (277)
T 3evf_A          184 VLAPYMPDVLEKLELLQRRFGGTVI  208 (277)
T ss_dssp             ESCTTSHHHHHHHHHHHHHHCCEEE
T ss_pred             ecCCCCccHHHHHHHHHHhcCCEEE
Confidence            433  34467788888877754333

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.23  E-value=1.1e-06  Score=64.33  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=42.5

Q ss_pred             cccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCccc-HHHHHHHH-hCCeEEEecc-hhhHH
Q 027659           33 HLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCG-VAGFGMAL-LGCNVITTDQ-IEVLP   99 (220)
Q Consensus        33 ~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G-~~~l~la~-~g~~v~~~D~-~~~l~   99 (220)
                      ..+.+.|   ..|++||.++.         ..+.+|||+|||.| -.+..++. .|..|++||+ +.+++
T Consensus        16 ~~~~~m~---e~LaeYI~~~~---------~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~   73 (153)
T 2k4m_A           16 PRGSHMW---NDLAVYIIRCS---------GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG   73 (153)
T ss_dssp             CCCCHHH---HHHHHHHHHHS---------CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT
T ss_pred             cchhhHH---HHHHHHHHhcC---------CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc
Confidence            3455664   35899998763         23569999999999 59999997 8999999998 55554

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.21  E-value=5.1e-06  Score=67.03  Aligned_cols=135  Identities=11%  Similarity=0.002  Sum_probs=73.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-------C-------CeEEEecc-h---hhHH-----------HHHHHHHHhhhhhcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-------G-------CNVITTDQ-I---EVLP-----------LLKRNVEWNTSRISQ  114 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-------g-------~~v~~~D~-~---~~l~-----------~~~~n~~~n~~~~~~  114 (220)
                      ++.+|||+|+|+|+..+.+++.       +       .+++++|. +   +.+.           .++.+++.-...+..
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4568999999999999887653       2       26899995 5   2333           333333320000000


Q ss_pred             --CCCCCCCCCceEEEEeeeCCCCCccccC----CCccEEEEec--C-CCCCC-hHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          115 --MNPGSDLLGSIQAVELDWGNEDHIKAVA----PPFDYIIGTD--V-YAEHL-LEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       115 --~~~~~~~~~~v~~~~ldw~~~~~~~~~~----~~fD~V~~~d--~-y~~~~-~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                        .........++++...|..+.  ++...    ..||+|+.-.  + -+++. .+.+++.+.++|+|||++.. +.. .
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~--l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t-ysa-a  215 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINEL--ISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT-FTS-A  215 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHH--GGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE-SCC-B
T ss_pred             hhheeccCCceEEEEEECcHHHH--HhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE-EeC-C
Confidence              000000112344444333221  22222    3799999843  2 23332 46799999999999999773 221 1


Q ss_pred             chHHHHHHHHH-hcCCeEEEeeC
Q 027659          185 TSVHEQMLQMW-KSNFNVKLVPK  206 (220)
Q Consensus       185 ~~~~~~f~~~~-~~~f~v~~v~~  206 (220)
                          ..+.+.+ ..+|++++++.
T Consensus       216 ----~~vrr~L~~aGF~v~~~~g  234 (257)
T 2qy6_A          216 ----GFVRRGLQEAGFTMQKRKG  234 (257)
T ss_dssp             ----HHHHHHHHHHTEEEEEECC
T ss_pred             ----HHHHHHHHHCCCEEEeCCC
Confidence                2333444 35899988754

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.08  E-value=1.4e-05  Score=67.75  Aligned_cols=120  Identities=13%  Similarity=-0.045  Sum_probs=71.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh------------C-----CeEEEecchh-hHHHHHHHHHHhhhhhc--cCCCCCCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALL------------G-----CNVITTDQIE-VLPLLKRNVEWNTSRIS--QMNPGSDLLG  123 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~------------g-----~~v~~~D~~~-~l~~~~~n~~~n~~~~~--~~~~~~~~~~  123 (220)
                      +..+|+|||||+|..++.++..            |     .+|...|+|. -...+=+++........  ....  ....
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~--~~~~  129 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLA--ADGN  129 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC-----CCC
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhcc--ccCC
Confidence            4578999999999999988321            1     2588889854 33333222222110000  0000  0001


Q ss_pred             ceEEEEeeeCCCCCccccCCCccEEEEecC-CCCC--------------------------------------ChHHHHH
Q 027659          124 SIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEH--------------------------------------LLEPLLQ  164 (220)
Q Consensus       124 ~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~--------------------------------------~~~~l~~  164 (220)
                      +-.+....=+.+.....+.++||+|+++-+ ++-+                                      ++..+++
T Consensus       130 ~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~  209 (374)
T 3b5i_A          130 RSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLR  209 (374)
T ss_dssp             BCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            112333333554444456789999999999 6644                                      2334677


Q ss_pred             HHHHhhCCCcEEEEEEEecCc
Q 027659          165 TIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       165 ~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      ...+.|+|||.+++....|..
T Consensus       210 ~ra~eL~pGG~mvl~~~gr~~  230 (374)
T 3b5i_A          210 ARAAEVKRGGAMFLVCLGRTS  230 (374)
T ss_dssp             HHHHHEEEEEEEEEEEEECCC
T ss_pred             HHHHHhCCCCEEEEEEecCCC
Confidence            888899999999999888754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.06  E-value=6.5e-06  Score=67.72  Aligned_cols=46  Identities=20%  Similarity=0.201  Sum_probs=41.8

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (220)
                      .+|..|||++||+|..+++++++|.+++++|+ +++++.+++|+...
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            36789999999999999999999999999999 66999999998764

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.03  E-value=1.1e-05  Score=68.08  Aligned_cols=72  Identities=15%  Similarity=0.107  Sum_probs=50.6

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..+|.+||||||.+|-.+..+++.|++|+++|..++-..+.    .              .++|.+...|-..   ....
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~----~--------------~~~V~~~~~d~~~---~~~~  267 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLM----D--------------TGQVTWLREDGFK---FRPT  267 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHH----T--------------TTCEEEECSCTTT---CCCC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhc----c--------------CCCeEEEeCcccc---ccCC
Confidence            34789999999999999999999999999999744323221    1              2467777754332   2223


Q ss_pred             CCCccEEEEecCC
Q 027659          142 APPFDYIIGTDVY  154 (220)
Q Consensus       142 ~~~fD~V~~~d~y  154 (220)
                      ..+||+|+|--..
T Consensus       268 ~~~~D~vvsDm~~  280 (375)
T 4auk_A          268 RSNISWMVCDMVE  280 (375)
T ss_dssp             SSCEEEEEECCSS
T ss_pred             CCCcCEEEEcCCC
Confidence            4679999874443

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.01  E-value=4.5e-05  Score=64.87  Aligned_cols=112  Identities=13%  Similarity=0.057  Sum_probs=70.1

Q ss_pred             CCcEEEeCCcccHHHHHHHHh--------------C---C--eEEEecch--hh------HHHHHHHHHHhhhhhccCCC
Q 027659           65 GKRVIELGAGCGVAGFGMALL--------------G---C--NVITTDQI--EV------LPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~--------------g---~--~v~~~D~~--~~------l~~~~~n~~~n~~~~~~~~~  117 (220)
                      ..+|+||||++|..++.+...              +   .  .|+..|+|  +.      |+...+.+.....       
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g-------  125 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG-------  125 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC-------
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc-------
Confidence            568999999999999988755              1   2  48889985  22      1222222211100       


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChH------------------------------------
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLE------------------------------------  160 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~------------------------------------  160 (220)
                         ...+.-+....=+.+.....+.+++|+|+++-+ +|-+..+                                    
T Consensus       126 ---~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~  202 (384)
T 2efj_A          126 ---RKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTK  202 (384)
T ss_dssp             ---CCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHH
T ss_pred             ---CCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHH
Confidence               001224444444554444456789999999999 6643321                                    


Q ss_pred             ---HHHHHHHHhhCCCcEEEEEEEecCch
Q 027659          161 ---PLLQTIFALSGPKTTILLGYEIRSTS  186 (220)
Q Consensus       161 ---~l~~~l~~~l~~~g~~~i~~~~r~~~  186 (220)
                         .+++...+.|+|||++++....|...
T Consensus       203 D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~  231 (384)
T 2efj_A          203 DFTTFLRIHSEELISRGRMLLTFICKEDE  231 (384)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEECCCTT
T ss_pred             HHHHHHHHHHHHhccCCeEEEEEecCCCc
Confidence               12566678899999999998877653

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.00  E-value=0.00016  Score=64.23  Aligned_cols=125  Identities=13%  Similarity=0.036  Sum_probs=78.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh---------------CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceE
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQ  126 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~---------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~  126 (220)
                      ..+.+|+|-.||+|..-+.+...               ...+++.|. +.+..+++-|+..++..            ...
T Consensus       216 ~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~------------~~~  283 (530)
T 3ufb_A          216 QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE------------YPR  283 (530)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS------------CCE
T ss_pred             CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc------------ccc
Confidence            35679999999999877766542               235999998 66999999999887751            112


Q ss_pred             EEEeeeCCCCCcc----ccCCCccEEEEecCCCCCC-----------------hHHHHHHHHHhhC-------CCcEEEE
Q 027659          127 AVELDWGNEDHIK----AVAPPFDYIIGTDVYAEHL-----------------LEPLLQTIFALSG-------PKTTILL  178 (220)
Q Consensus       127 ~~~ldw~~~~~~~----~~~~~fD~V~~~d~y~~~~-----------------~~~l~~~l~~~l~-------~~g~~~i  178 (220)
                      +.   +++....+    ....+||+|++||||....                 --.++..+.+.|+       +||++.+
T Consensus       284 I~---~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~av  360 (530)
T 3ufb_A          284 ID---PENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAV  360 (530)
T ss_dssp             EE---CSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEE
T ss_pred             cc---ccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEE
Confidence            22   23322111    1235799999999964221                 1235566666665       7999888


Q ss_pred             EEEec---CchHHHHHHHHHhcCCeEE
Q 027659          179 GYEIR---STSVHEQMLQMWKSNFNVK  202 (220)
Q Consensus       179 ~~~~r---~~~~~~~f~~~~~~~f~v~  202 (220)
                      ..+.-   +......+.+.+-+.+.++
T Consensus       361 VlP~g~Lf~~~~~~~iRk~Lle~~~l~  387 (530)
T 3ufb_A          361 VVPNGTLFSDGISARIKEELLKNFNLH  387 (530)
T ss_dssp             EEEHHHHHCCTHHHHHHHHHHHHSEEE
T ss_pred             EecchhhhccchHHHHHHHHhhcCEEE
Confidence            87742   1223345555554445444

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.97  E-value=0.00011  Score=60.29  Aligned_cols=128  Identities=13%  Similarity=0.054  Sum_probs=85.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHH-hhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..++||=||-|.|...-.+++. + .+|+++|+ +++++.+++-... |...        -...++++...|....-  .
T Consensus        83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~--------~~dpRv~v~~~Dg~~~l--~  152 (294)
T 3o4f_A           83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGS--------YDDPRFKLVIDDGVNFV--N  152 (294)
T ss_dssp             CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTG--------GGCTTEEEEESCTTTTT--S
T ss_pred             CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccc--------cCCCcEEEEechHHHHH--h
Confidence            4579999999999999888875 3 46999999 6699999876532 2211        01457888886654442  2


Q ss_pred             ccCCCccEEEEecC--CC-CC--ChHHHHHHHHHhhCCCcEEEEEEEe--cCchHHHHHHHHHhcCCeE
Q 027659          140 AVAPPFDYIIGTDV--YA-EH--LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       140 ~~~~~fD~V~~~d~--y~-~~--~~~~l~~~l~~~l~~~g~~~i~~~~--r~~~~~~~f~~~~~~~f~v  201 (220)
                      ...++||+|+.--.  .. ..  .-..+.+.+++.|+|+|++..-...  -.........+.+++.|..
T Consensus       153 ~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~sp~~~~~~~~~~~~~l~~~F~~  221 (294)
T 3o4f_A          153 QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSD  221 (294)
T ss_dssp             CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEEESSSCCHHHHHHHHHHHHHCSE
T ss_pred             hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEecCCcccChHHHHHHHHHHHhhCCc
Confidence            34678999986432  11 11  2367899999999999998864332  2223344555666666644

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.93  E-value=7.1e-05  Score=63.16  Aligned_cols=138  Identities=16%  Similarity=0.132  Sum_probs=90.1

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (220)
                      .+|++.+..|.           ...|.+|||+.||.|-=++.+|..+.  .|++.|. +.-+..+++|++..+....   
T Consensus       135 ~aS~l~~~~L~-----------~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~---  200 (359)
T 4fzv_A          135 AASLLPVLALG-----------LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEI---  200 (359)
T ss_dssp             GGGHHHHHHHC-----------CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTT---
T ss_pred             HHHHHHHHHhC-----------CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhh---
Confidence            56776666553           33688999999999998888888765  5999998 5588899999987764211   


Q ss_pred             CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CC---------CC---------------ChHHHHHHHHHhhC
Q 027659          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YA---------EH---------------LLEPLLQTIFALSG  171 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~---------~~---------------~~~~l~~~l~~~l~  171 (220)
                         ....++.+...|.....  ....+.||.|+.-.+ -.         +.               ....++....++|+
T Consensus       201 ---~~~~~v~v~~~D~~~~~--~~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk  275 (359)
T 4fzv_A          201 ---RDGNQVRVTSWDGRKWG--ELEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATK  275 (359)
T ss_dssp             ---TTSSSEEEECCCGGGHH--HHSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEE
T ss_pred             ---ccCCceEEEeCchhhcc--hhccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence               01246777665433221  113568999987443 11         11               01346666777889


Q ss_pred             CCcEEEEEEEecCc----hHHHHHHHHHh
Q 027659          172 PKTTILLGYEIRST----SVHEQMLQMWK  196 (220)
Q Consensus       172 ~~g~~~i~~~~r~~----~~~~~f~~~~~  196 (220)
                      |||+++.+...-.+    .+.+.|++...
T Consensus       276 pGG~LVYsTCSl~~~ENE~vV~~~L~~~~  304 (359)
T 4fzv_A          276 PGGHVVYSTCSLSHLQNEYVVQGAIELLA  304 (359)
T ss_dssp             EEEEEEEEESCCCTTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCchhhCHHHHHHHHHhCC
Confidence            99988776544332    34667776553

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.90  E-value=7.2e-06  Score=66.39  Aligned_cols=142  Identities=14%  Similarity=0.004  Sum_probs=83.4

Q ss_pred             cccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHH-hCC-eEEEecch-hhHHHHHHHHHHhhhh
Q 027659           35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQI-EVLPLLKRNVEWNTSR  111 (220)
Q Consensus        35 g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~-~g~-~v~~~D~~-~~l~~~~~n~~~n~~~  111 (220)
                      |..+=+++.-|.+...+.        ....+.+|||||||+|-.+.+++. .++ .|+++|+. ++...... ..     
T Consensus        69 g~YrSRAAfKL~ei~eK~--------~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-~~-----  134 (282)
T 3gcz_A           69 GIAVSRGSAKLRWMEERG--------YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-RT-----  134 (282)
T ss_dssp             SBCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CC-----
T ss_pred             CCEecHHHHHHHHHHHhc--------CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-cc-----
Confidence            555667888888877654        234667999999999999999885 455 48899873 21100000 00     


Q ss_pred             hccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC-----h--HHHHHHHHHhhCCC--cEEEEEEEe
Q 027659          112 ISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL-----L--EPLLQTIFALSGPK--TTILLGYEI  182 (220)
Q Consensus       112 ~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~-----~--~~l~~~l~~~l~~~--g~~~i~~~~  182 (220)
                              ....++....   ...+.......++|+|+|.-..+...     .  -.|++....+|+||  |.+++  +.
T Consensus       135 --------~~g~~ii~~~---~~~dv~~l~~~~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~--Kv  201 (282)
T 3gcz_A          135 --------TLGWNLIRFK---DKTDVFNMEVIPGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCI--KV  201 (282)
T ss_dssp             --------BTTGGGEEEE---CSCCGGGSCCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE--EE
T ss_pred             --------cCCCceEEee---CCcchhhcCCCCcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEE--EE
Confidence                    0011222211   11111122457899999843344221     1  13566777889999  98776  43


Q ss_pred             cC--chHHHHHHHHHhcCCeEEE
Q 027659          183 RS--TSVHEQMLQMWKSNFNVKL  203 (220)
Q Consensus       183 r~--~~~~~~f~~~~~~~f~v~~  203 (220)
                      -.  ...+..|++.++..|.-..
T Consensus       202 F~pyg~~~~~l~~~lk~~F~~V~  224 (282)
T 3gcz_A          202 LCPYTPLIMEELSRLQLKHGGGL  224 (282)
T ss_dssp             SCCCSHHHHHHHHHHHHHHCCEE
T ss_pred             ecCCCccHHHHHHHHHHhcCCEE
Confidence            33  3346677888887775433

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.89  E-value=2.1e-05  Score=66.31  Aligned_cols=111  Identities=11%  Similarity=0.019  Sum_probs=73.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh------------C------CeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL------------G------CNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~------------g------~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (220)
                      +..+|+||||++|..++.+...            +      ..|+..|+|. ....+-+++.....           ..+
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~-----------~~~  119 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEND-----------VDG  119 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCS-----------CTT
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcc-----------cCC
Confidence            3467999999999888876644            2      2488999854 55544444332110           002


Q ss_pred             eEEEEeeeCCCCCccccCCCccEEEEecC-CCCCC---------------------------------hHHHHHHHHHhh
Q 027659          125 IQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHL---------------------------------LEPLLQTIFALS  170 (220)
Q Consensus       125 v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~---------------------------------~~~l~~~l~~~l  170 (220)
                      ..+....-+.+.....+.+++|+|+++-. ++-+.                                 +..+++...+.|
T Consensus       120 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL  199 (359)
T 1m6e_X          120 VCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEV  199 (359)
T ss_dssp             CEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHB
T ss_pred             CEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            24444444555544556789999999998 65332                                 223578888889


Q ss_pred             CCCcEEEEEEEecCc
Q 027659          171 GPKTTILLGYEIRST  185 (220)
Q Consensus       171 ~~~g~~~i~~~~r~~  185 (220)
                      +|||++++....|..
T Consensus       200 ~pGG~mvl~~~gr~~  214 (359)
T 1m6e_X          200 VPGGRMVLTILGRRS  214 (359)
T ss_dssp             CTTCEEEEEEEECSS
T ss_pred             cCCceEEEEEecCCC
Confidence            999999999887765

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.80  E-value=8.4e-05  Score=60.57  Aligned_cols=143  Identities=14%  Similarity=0.084  Sum_probs=85.8

Q ss_pred             ccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CC-eEEEecchh-hHHHHHHHHHHhhh
Q 027659           34 LGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQIE-VLPLLKRNVEWNTS  110 (220)
Q Consensus        34 ~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~-~v~~~D~~~-~l~~~~~n~~~n~~  110 (220)
                      +|...=+++.-|.+...++        -..++++||||||++|-.+.++++. ++ .|+++|+.. +..        ...
T Consensus        59 ~g~yrSRaa~KL~ei~ek~--------l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~--------~P~  122 (300)
T 3eld_A           59 VGISVSRGAAKIRWLHERG--------YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHE--------KPI  122 (300)
T ss_dssp             SCCCSSTTHHHHHHHHHHT--------SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSC--------CCC
T ss_pred             CCCccchHHHHHHHHHHhC--------CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccc--------ccc
Confidence            4566667888888888763        2347889999999999999999974 55 488998732 100        000


Q ss_pred             hhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCCh-------HHHHHHHHHhhCCC-cEEEEEEE
Q 027659          111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLL-------EPLLQTIFALSGPK-TTILLGYE  181 (220)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~-------~~l~~~l~~~l~~~-g~~~i~~~  181 (220)
                      .+.      ....++....   ...........++|+|++ |+ -+....       ..|++....+|+|| |.|++  +
T Consensus       123 ~~~------~~~~~iv~~~---~~~di~~l~~~~~DlVls-D~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~--K  190 (300)
T 3eld_A          123 HMQ------TLGWNIVKFK---DKSNVFTMPTEPSDTLLC-DIGESSSNPLVERDRTMKVLENFERWKHVNTENFCV--K  190 (300)
T ss_dssp             CCC------BTTGGGEEEE---CSCCTTTSCCCCCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEE--E
T ss_pred             ccc------ccCCceEEee---cCceeeecCCCCcCEEee-cCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEE--E
Confidence            000      0011222111   111111123568999998 55 442221       24677778889999 98777  3


Q ss_pred             ecC--chHHHHHHHHHhcCCeEEEe
Q 027659          182 IRS--TSVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       182 ~r~--~~~~~~f~~~~~~~f~v~~v  204 (220)
                      .-.  ......|++.++..|.-..+
T Consensus       191 vF~~yG~~~~~ll~~lk~~F~~V~~  215 (300)
T 3eld_A          191 VLAPYHPDVIEKLERLQLRFGGGIV  215 (300)
T ss_dssp             ESSTTSHHHHHHHHHHHHHHCCEEE
T ss_pred             eccccCccHHHHHHHHHHhCCcEEE
Confidence            333  44467778888777654333

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.76  E-value=4.5e-05  Score=61.45  Aligned_cols=48  Identities=19%  Similarity=0.101  Sum_probs=41.5

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhh
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTS  110 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~  110 (220)
                      .+|..|||..||+|..+++++++|.+++++|+ +++++.+++|++.++.
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            36789999999999999999999999999999 6699999999987653

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.74  E-value=8.7e-05  Score=60.56  Aligned_cols=104  Identities=11%  Similarity=-0.006  Sum_probs=70.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-------CCeEEEecc-h--------------------------hhHHHHHHHHHHhh
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-------GCNVITTDQ-I--------------------------EVLPLLKRNVEWNT  109 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-------g~~v~~~D~-~--------------------------~~l~~~~~n~~~n~  109 (220)
                      ..++|||+|+..|.-++.+|..       +.+|+++|. .                          ..++.+++|++..+
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            3458999999999999888743       457999883 1                          14667888888776


Q ss_pred             hhhccCCCCCCCCCceEEEEeeeCCCCCccc-cCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKA-VAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ..          ..+|++...+..+.  ++. ...+||+|+.--- |  ......+..+..+|+|||.+++-..
T Consensus       186 l~----------~~~I~li~Gda~et--L~~~~~~~~d~vfIDaD~y--~~~~~~Le~~~p~L~pGGiIv~DD~  245 (282)
T 2wk1_A          186 LL----------DEQVRFLPGWFKDT--LPTAPIDTLAVLRMDGDLY--ESTWDTLTNLYPKVSVGGYVIVDDY  245 (282)
T ss_dssp             CC----------STTEEEEESCHHHH--STTCCCCCEEEEEECCCSH--HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred             CC----------cCceEEEEeCHHHH--HhhCCCCCEEEEEEcCCcc--ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence            51          25788888554321  221 2468999885321 2  1234667778888999998887543

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.47  E-value=0.00067  Score=54.20  Aligned_cols=140  Identities=14%  Similarity=0.049  Sum_probs=75.6

Q ss_pred             ccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh--CCe----EEEecchhhHHHHHHHHHH
Q 027659           34 LGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL--GCN----VITTDQIEVLPLLKRNVEW  107 (220)
Q Consensus        34 ~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~--g~~----v~~~D~~~~l~~~~~n~~~  107 (220)
                      +|...=+++.-|.+.-.+.        -..+|.+||||||+.|-.+.++++.  ...    |+++|.+. .+..-  +. 
T Consensus        51 ~g~yRSRAayKL~EIdeK~--------likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~-~P~~~--~~-  118 (269)
T 2px2_A           51 GGHPVSRGTAKLRWLVERR--------FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHE-EPMLM--QS-  118 (269)
T ss_dssp             CSCCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSC-CCCCC--CS-
T ss_pred             CCCcccHHHHHHHHHHHcC--------CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccccc-CCCcc--cC-
Confidence            4555556677776544432        2336889999999999999999986  223    44455210 00000  00 


Q ss_pred             hhhhhccCCCCCCCCCceEEEEe-eeCCCCCccccCCCccEEEEecCCCCCC----hH---HHHHHHHHhhCCCc-EEEE
Q 027659          108 NTSRISQMNPGSDLLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVYAEHL----LE---PLLQTIFALSGPKT-TILL  178 (220)
Q Consensus       108 n~~~~~~~~~~~~~~~~v~~~~l-dw~~~~~~~~~~~~fD~V~~~d~y~~~~----~~---~l~~~l~~~l~~~g-~~~i  178 (220)
                      .+            -.-+.+... |..+.     ...++|+|+|--.-+...    ..   ..++...+.|+||| .+++
T Consensus       119 ~G------------v~~i~~~~G~Df~~~-----~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~Fvv  181 (269)
T 2px2_A          119 YG------------WNIVTMKSGVDVFYK-----PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCI  181 (269)
T ss_dssp             TT------------GGGEEEECSCCGGGS-----CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CC------------ceEEEeeccCCccCC-----CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence            00            011233333 44332     245899999643232221    11   14555667899999 6665


Q ss_pred             EEEecCc--hHHHHHHHHHhcCCeEEEe
Q 027659          179 GYEIRST--SVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       179 ~~~~r~~--~~~~~f~~~~~~~f~v~~v  204 (220)
                        +.-.+  ..+.++++.++..|....+
T Consensus       182 --KVFqg~~~~~~~~l~~lk~~F~~vkv  207 (269)
T 2px2_A          182 --KILCPYMPKVIEKLESLQRRFGGGLV  207 (269)
T ss_dssp             --EESCTTSHHHHHHHHHHHHHHCCEEE
T ss_pred             --EECCCCchHHHHHHHHHHHHcCCEEE
Confidence              44333  3355666677776655443

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.43  E-value=0.0021  Score=52.28  Aligned_cols=138  Identities=12%  Similarity=0.037  Sum_probs=77.7

Q ss_pred             ccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHH-hCCe-EEEecc-hh-h-HHHHHHHHH
Q 027659           32 KHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ-IE-V-LPLLKRNVE  106 (220)
Q Consensus        32 ~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~-~g~~-v~~~D~-~~-~-l~~~~~n~~  106 (220)
                      ..+|..+=+++.-|.+...+.        ....+.+||||||++|-.+.+++. .|++ |+++|+ .. - -+.+.+...
T Consensus        70 ~~~g~y~SR~~~KL~ei~~~~--------~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~  141 (321)
T 3lkz_A           70 VTGGHPVSRGTAKLRWLVERR--------FLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYG  141 (321)
T ss_dssp             CSSCCCSSTHHHHHHHHHHTT--------SCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTT
T ss_pred             CcCCCccchHHHHHHHHHHhc--------CCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcC
Confidence            345666777788887776653        234667999999999999997774 5765 999996 22 1 000000000


Q ss_pred             HhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCCh-------HHHHHHHHHhhCCC-cEEE
Q 027659          107 WNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLL-------EPLLQTIFALSGPK-TTIL  177 (220)
Q Consensus       107 ~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~-------~~l~~~l~~~l~~~-g~~~  177 (220)
                                     -.-|.+...  .+...+  .+.++|+|+| |+ -.....       -..+..+.+.|+++ |.++
T Consensus       142 ---------------w~lV~~~~~--~Dv~~l--~~~~~D~ivc-DigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~  201 (321)
T 3lkz_A          142 ---------------WNIVTMKSG--VDVFYR--PSECCDTLLC-DIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFC  201 (321)
T ss_dssp             ---------------GGGEEEECS--CCTTSS--CCCCCSEEEE-CCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             ---------------CcceEEEec--cCHhhC--CCCCCCEEEE-ECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEE
Confidence                           012344331  011122  2367998886 44 322221       12455556678887 6555


Q ss_pred             EEEEecCc--hHHHHHHHHHhcCC
Q 027659          178 LGYEIRST--SVHEQMLQMWKSNF  199 (220)
Q Consensus       178 i~~~~r~~--~~~~~f~~~~~~~f  199 (220)
                      +  +.-.+  .....+++.++..|
T Consensus       202 ~--KVl~pY~~~v~e~l~~lq~~f  223 (321)
T 3lkz_A          202 V--KVLCPYMPKVIEKMELLQRRY  223 (321)
T ss_dssp             E--EESCTTSHHHHHHHHHHHHHH
T ss_pred             E--EEcCCCChHHHHHHHHHHHHh
Confidence            5  55554  33446667666544

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.40  E-value=0.00072  Score=56.62  Aligned_cols=71  Identities=20%  Similarity=0.107  Sum_probs=48.8

Q ss_pred             CcEEEeCCcccHHHHHHHHhC--Ce-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           66 KRVIELGAGCGVAGFGMALLG--CN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g--~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+||||.||+|.+++.+.+.|  ++ |.++|. +.+++..+.|...                 ..+...|..+.......
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----------------~~~~~~Di~~~~~~~~~   65 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----------------TQLLAKTIEGITLEEFD   65 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----------------SCEECSCGGGCCHHHHH
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----------------cccccCCHHHccHhHcC
Confidence            479999999999999999998  55 889998 5688888887531                 22333333332110001


Q ss_pred             CCCccEEEEecC
Q 027659          142 APPFDYIIGTDV  153 (220)
Q Consensus       142 ~~~fD~V~~~d~  153 (220)
                      ...+|+|+++++
T Consensus        66 ~~~~D~l~~gpP   77 (343)
T 1g55_A           66 RLSFDMILMSPP   77 (343)
T ss_dssp             HHCCSEEEECCC
T ss_pred             cCCcCEEEEcCC
Confidence            126999999887

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=97.37  E-value=0.0015  Score=55.41  Aligned_cols=137  Identities=15%  Similarity=0.113  Sum_probs=87.5

Q ss_pred             EEEEEeCCC-CccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecchhhHHH
Q 027659           22 QLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQIEVLPL  100 (220)
Q Consensus        22 ~~~i~~~~~-~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~~~l~~  100 (220)
                      .++++..|. ........|+++--+   |..+..      ....+.+||-|+.+.|.+++.++..+. ...+|---+...
T Consensus         4 ~~~l~r~p~~~~~~~l~a~da~d~~---ll~~~~------~~~~~~~~~~~~d~~gal~~~~~~~~~-~~~~ds~~~~~~   73 (375)
T 4dcm_A            4 SLTLQRFPATDDVNPLQAWEAADEY---LLQQLD------DTEIRGPVLILNDAFGALSCALAEHKP-YSIGDSYISELA   73 (375)
T ss_dssp             TCCCCCSSCCCSSCSCCSCCHHHHH---HHHTTT------TCCCCSCEEEECCSSSHHHHHTGGGCC-EEEESCHHHHHH
T ss_pred             ceeEEECCCCCCCCCCCccchHHHH---HHHhhh------hccCCCCEEEECCCCCHHHHhhccCCc-eEEEhHHHHHHH
Confidence            455566665 556778999998743   444321      112456899999999999999886543 334674224577


Q ss_pred             HHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          101 LKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       101 ~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ++.|++.|++.          ...+.+..  ..+     .....||+|+.--+-........+..+...|++++.++++.
T Consensus        74 ~~~n~~~~~~~----------~~~~~~~~--~~~-----~~~~~~~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~g  136 (375)
T 4dcm_A           74 TRENLRLNGID----------ESSVKFLD--STA-----DYPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGA  136 (375)
T ss_dssp             HHHHHHHTTCC----------GGGSEEEE--TTS-----CCCSSCSEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred             HHHHHHHcCCC----------ccceEecc--ccc-----ccccCCCEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence            88999999862          12355432  111     13568999886444223334555666666688999998888


Q ss_pred             EecCc
Q 027659          181 EIRST  185 (220)
Q Consensus       181 ~~r~~  185 (220)
                      ..+..
T Consensus       137 ~~~~~  141 (375)
T 4dcm_A          137 KARDI  141 (375)
T ss_dssp             EGGGC
T ss_pred             cccch
Confidence            76654

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=97.31  E-value=0.00017  Score=58.54  Aligned_cols=41  Identities=24%  Similarity=0.184  Sum_probs=36.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHH
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKR  103 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~  103 (220)
                      ..+..+||.+||.|--+..+++.+.+|+++|. +++++.+++
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~   62 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG   62 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            36779999999999999999988889999998 679998876

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.26  E-value=0.0042  Score=49.06  Aligned_cols=134  Identities=14%  Similarity=0.062  Sum_probs=75.8

Q ss_pred             cccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHH-hCCe-EEEecc-hh-h-HHHHHHHHHHhh
Q 027659           35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCN-VITTDQ-IE-V-LPLLKRNVEWNT  109 (220)
Q Consensus        35 g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~-~g~~-v~~~D~-~~-~-l~~~~~n~~~n~  109 (220)
                      |..+=+++.-|.+...+.        ....+.+||||||++|-.+.+++. .|++ |+++|. .. - -+.+.+      
T Consensus        57 g~yrSRa~~KL~ei~ek~--------~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~------  122 (267)
T 3p8z_A           57 HHAVSRGSAKLQWFVERN--------MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMS------  122 (267)
T ss_dssp             SCCSSTHHHHHHHHHHTT--------SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCC------
T ss_pred             CCccchHHHHHHHHHHhc--------CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhh------
Confidence            555556777777666544        234677999999999999997775 5665 999997 32 1 000000      


Q ss_pred             hhhccCCCCCCCCCceEEEEe-eeCCCCCccccCCCccEEEEecCCCCCC-h-H-----HHHHHHHHhhCCCcEEEEEEE
Q 027659          110 SRISQMNPGSDLLGSIQAVEL-DWGNEDHIKAVAPPFDYIIGTDVYAEHL-L-E-----PLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~l-dw~~~~~~~~~~~~fD~V~~~d~y~~~~-~-~-----~l~~~l~~~l~~~g~~~i~~~  181 (220)
                               +-.-..|++... |.   ...  ...++|+|+|----.... . +     ..+..+.+.|++ +.+++  +
T Consensus       123 ---------s~gwn~v~fk~gvDv---~~~--~~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~--K  185 (267)
T 3p8z_A          123 ---------TYGWNIVKLMSGKDV---FYL--PPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCI--K  185 (267)
T ss_dssp             ---------CTTTTSEEEECSCCG---GGC--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE--E
T ss_pred             ---------hcCcCceEEEeccce---eec--CCccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEE--E
Confidence                     011235677663 32   112  246799998643332221 1 1     144444566788 55544  4


Q ss_pred             ecCchH--HHHHHHHHhcCC
Q 027659          182 IRSTSV--HEQMLQMWKSNF  199 (220)
Q Consensus       182 ~r~~~~--~~~f~~~~~~~f  199 (220)
                      .-.+..  ..++++.++..|
T Consensus       186 Vl~py~p~v~e~l~~lq~~f  205 (267)
T 3p8z_A          186 VLNPYMPTVIEHLERLQRKH  205 (267)
T ss_dssp             ESCCCSHHHHHHHHHHHHHH
T ss_pred             EccCCChhHHHHHHHHHHHh
Confidence            444332  446666666544

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.22  E-value=0.0007  Score=57.29  Aligned_cols=132  Identities=15%  Similarity=0.048  Sum_probs=78.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHH-hhhhhccCCCCCCCCCceEEEEeeeCCCCC-cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEW-NTSRISQMNPGSDLLGSIQAVELDWGNEDH-IK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~-n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~  139 (220)
                      ..++||=||.|.|...-.+.+... +|+++|+ +++++.+++-... ++..     -+.....++++...|....-. ..
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~-----~d~pr~~rv~vii~Da~~fl~~~~  279 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDV-----LDNLKGDCYQVLIEDCIPVLKRYA  279 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----C-----CSSSEETTEEEEESCHHHHHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhh-----hccccccceeeehHHHHHHHHhhh
Confidence            457999999999999888887654 5999999 6689988875421 1100     000112356666643322110 11


Q ss_pred             ccCCCccEEEEecC-C--CC-----C---ChHHHHHHHHHhhCCCcEEEEEEE-ecCchHHHHHHHHHhcCCe
Q 027659          140 AVAPPFDYIIGTDV-Y--AE-----H---LLEPLLQTIFALSGPKTTILLGYE-IRSTSVHEQMLQMWKSNFN  200 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y--~~-----~---~~~~l~~~l~~~l~~~g~~~i~~~-~r~~~~~~~f~~~~~~~f~  200 (220)
                      ...++||+|+.--. .  ..     .   ....+.+.+++.|+|+|+++.-.. ....+....+.+.+++.|.
T Consensus       280 ~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~~~~~~~i~~tl~~vF~  352 (381)
T 3c6k_A          280 KEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNLTEALSLYEEQLGRLYC  352 (381)
T ss_dssp             HHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTCHHHHHHHHHHHTTSSS
T ss_pred             hccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcchhHHHHHHHHHHHhCC
Confidence            23468999997521 1  11     0   125678888999999999775322 2223334566677776553

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.18  E-value=0.00094  Score=56.68  Aligned_cols=71  Identities=23%  Similarity=0.181  Sum_probs=50.9

Q ss_pred             CcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc---
Q 027659           66 KRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA---  140 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~---  140 (220)
                      .++|||-||+|.+++.+.+.|.+ |.++|+ +.+++..+.|..                 +..+...|..+......   
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~-----------------~~~~~~~DI~~~~~~~~~~~   65 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP-----------------RSLHVQEDVSLLNAEIIKGF   65 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT-----------------TSEEECCCGGGCCHHHHHHH
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC-----------------CCceEecChhhcCHHHHHhh
Confidence            47999999999999999999998 668998 568887777732                 23444544443321100   


Q ss_pred             --cCCCccEEEEecC
Q 027659          141 --VAPPFDYIIGTDV  153 (220)
Q Consensus       141 --~~~~fD~V~~~d~  153 (220)
                        ....+|+|+++++
T Consensus        66 ~~~~~~~D~i~ggpP   80 (376)
T 3g7u_A           66 FKNDMPIDGIIGGPP   80 (376)
T ss_dssp             HCSCCCCCEEEECCC
T ss_pred             cccCCCeeEEEecCC
Confidence              2457999999887

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.06  E-value=0.0071  Score=49.30  Aligned_cols=126  Identities=17%  Similarity=0.116  Sum_probs=71.5

Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCcEEEeCCc----ccHHHHHHHHh---CCeEEEecchhhHHHHHHHHHHhhhhhccC
Q 027659           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAG----CGVAGFGMALL---GCNVITTDQIEVLPLLKRNVEWNTSRISQM  115 (220)
Q Consensus        43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG----~G~~~l~la~~---g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~  115 (220)
                      .-|.+||.+..      -.-..|.+|||||||    +.--+.++.+.   |+.|+++|+.++..                
T Consensus        94 tqlcqyl~~~~------~~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s----------------  151 (344)
T 3r24_A           94 TQLCQYLNTLT------LAVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS----------------  151 (344)
T ss_dssp             HHHHHHHTTSC------CCCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC----------------
T ss_pred             HHHHHHhcccc------EeecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc----------------
Confidence            35777885421      133468999999983    22223455554   34799999855221                


Q ss_pred             CCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC----CC--------CCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          116 NPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV----YA--------EHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       116 ~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~----y~--------~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                            ... .+...|.   ... ....+||+|++--.    -+        ....+..+..+.+.|+|||.+++=.-.-
T Consensus       152 ------da~-~~IqGD~---~~~-~~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQG  220 (344)
T 3r24_A          152 ------DAD-STLIGDC---ATV-HTANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH  220 (344)
T ss_dssp             ------SSS-EEEESCG---GGE-EESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred             ------CCC-eEEEccc---ccc-ccCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecC
Confidence                  012 2244332   211 12578999997432    11        1125666777788899999988754433


Q ss_pred             CchHHHHHHHHHhcCCeEEEe
Q 027659          184 STSVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       184 ~~~~~~~f~~~~~~~f~v~~v  204 (220)
                      ..   ..++..+++.|+...+
T Consensus       221 sg---~~~L~~lrk~F~~VK~  238 (344)
T 3r24_A          221 SW---NADLYKLMGHFSWWTA  238 (344)
T ss_dssp             SC---CHHHHHHHTTEEEEEE
T ss_pred             CC---HHHHHHHHhhCCeEEE
Confidence            33   2445555568865444

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.41  E-value=0.023  Score=47.16  Aligned_cols=121  Identities=12%  Similarity=0.052  Sum_probs=70.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC--e-E-EEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC--N-V-ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~--~-v-~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      +..+++||-||.|-+++.+.+.|.  + | .++|+ +.+++..+.|....                  +...|..+....
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------------------~~~~DI~~~~~~   70 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------------------VQVKNLDSISIK   70 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------------------CBCCCTTTCCHH
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------------------cccCChhhcCHH
Confidence            345899999999999999999884  6 5 68999 55888887774311                  122222222111


Q ss_pred             cccCCCccEEEEecC---C--C-------CCC-hHHHHHHHHH-hhCC---CcEEEEEEEecC---chHHHHHHHHHhc-
Q 027659          139 KAVAPPFDYIIGTDV---Y--A-------EHL-LEPLLQTIFA-LSGP---KTTILLGYEIRS---TSVHEQMLQMWKS-  197 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~---y--~-------~~~-~~~l~~~l~~-~l~~---~g~~~i~~~~r~---~~~~~~f~~~~~~-  197 (220)
                      ......+|+++++++   |  .       ..+ -..|+..+.+ +++.   ...+++......   ...++.+.+.+++ 
T Consensus        71 ~i~~~~~Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~  150 (327)
T 3qv2_A           71 QIESLNCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKN  150 (327)
T ss_dssp             HHHHTCCCEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHT
T ss_pred             HhccCCCCEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhC
Confidence            111236999999887   6  1       112 2245555555 5431   245555554433   2345666666654 


Q ss_pred             CCeEE
Q 027659          198 NFNVK  202 (220)
Q Consensus       198 ~f~v~  202 (220)
                      ++.+.
T Consensus       151 GY~v~  155 (327)
T 3qv2_A          151 QYYIK  155 (327)
T ss_dssp             TCEEE
T ss_pred             CCEEE
Confidence            66653

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.27  E-value=0.0097  Score=49.41  Aligned_cols=45  Identities=24%  Similarity=0.304  Sum_probs=38.3

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHH
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~  105 (220)
                      ....+.++|||.||+|.+++.+.+.|.+ |.++|. +.+++..+.|.
T Consensus         7 ~~~~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~   53 (327)
T 2c7p_A            7 KQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             CTTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred             cccCCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc
Confidence            3446789999999999999999999998 778998 56888888875

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=96.25  E-value=0.0062  Score=50.72  Aligned_cols=117  Identities=15%  Similarity=0.143  Sum_probs=67.9

Q ss_pred             CcEEEeCCcccHHHHHHHHhCC--e-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           66 KRVIELGAGCGVAGFGMALLGC--N-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~--~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .+++||-||.|-+++.+.+.|.  + |.++|. +.+.+..+.|..                 ...+...|+.+.......
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----------------~~~~~~~DI~~~~~~~~~   66 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----------------ETNLLNRNIQQLTPQVIK   66 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----------------TSCEECCCGGGCCHHHHH
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----------------CCceeccccccCCHHHhc
Confidence            3799999999999999998886  6 778998 557777777642                 222334444433211111


Q ss_pred             CCCccEEEEecC---CCC------------CChHHHHHHHHHhhCCCcEEEEEEEecCc---hHHHHHHHHHhc-CCeE
Q 027659          142 APPFDYIIGTDV---YAE------------HLLEPLLQTIFALSGPKTTILLGYEIRST---SVHEQMLQMWKS-NFNV  201 (220)
Q Consensus       142 ~~~fD~V~~~d~---y~~------------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~---~~~~~f~~~~~~-~f~v  201 (220)
                      ...+|+++++++   |..            ..+..+++.+..+-+|  .+++......-   ...+.+.+.+++ ++.+
T Consensus        67 ~~~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P--~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v  143 (333)
T 4h0n_A           67 KWNVDTILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNV--DYILMENVKGFENSTVRNLFIDKLKECNFIY  143 (333)
T ss_dssp             HTTCCEEEECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTC--CEEEEEECTTGGGSHHHHHHHHHHHHTTEEE
T ss_pred             cCCCCEEEecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCC--CEEEEecchhhhhhhHHHHHHHHHHhCCCeE
Confidence            236999999877   421            1233333333222124  45555544332   235666666654 6655

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.21  E-value=0.015  Score=49.70  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=39.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHH-HhC---CeEEEecc-hhhHHHHHHHHHH
Q 027659           63 LKGKRVIELGAGCGVAGFGMA-LLG---CNVITTDQ-IEVLPLLKRNVEW  107 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la-~~g---~~v~~~D~-~~~l~~~~~n~~~  107 (220)
                      .++..++|+||+.|..++.++ +.+   .+|++.+- ++..+.+++|++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            467899999999999999888 443   57999997 7899999999998

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.05  E-value=0.0015  Score=67.51  Aligned_cols=99  Identities=17%  Similarity=0.072  Sum_probs=45.1

Q ss_pred             CCcEEEeCCcccHHHHHHH-HhC------CeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           65 GKRVIELGAGCGVAGFGMA-LLG------CNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la-~~g------~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..+|||+|+|+|.....+. .++      .+++.||.+ ...+.+++..+.  +             ++....+|..+. 
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~--~-------------di~~~~~d~~~~- 1304 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ--L-------------HVTQGQWDPANP- 1304 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH--H-------------TEEEECCCSSCC-
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh--c-------------cccccccccccc-
Confidence            4589999999986544332 222      268999984 455555555432  1             122222221111 


Q ss_pred             CccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 HIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                       .+.....||+|+++.+ +........++.+.++|+|||.+++..
T Consensus      1305 -~~~~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1305 -APGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             -CC-----CCEEEEECC--------------------CCEEEEEE
T ss_pred             -ccCCCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence             0112457999999999 877778888999999999999987754

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=95.97  E-value=0.057  Score=44.90  Aligned_cols=118  Identities=13%  Similarity=0.079  Sum_probs=72.1

Q ss_pred             CCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhc-----cCCCCC----CCCCceEEEEeeeC
Q 027659           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRIS-----QMNPGS----DLLGSIQAVELDWG  133 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~-----~~~~~~----~~~~~v~~~~ldw~  133 (220)
                      .+.|+.||||......-+...  +..++=+|+|++++.=++.+..+.....     ...+..    -...+...+..|..
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL~  177 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN  177 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCCC
Confidence            468999999999888888764  3457777888888776666665532100     000000    01256777777665


Q ss_pred             CCCC----ccc--cCCCccEEEEecC--CCC-CChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          134 NEDH----IKA--VAPPFDYIIGTDV--YAE-HLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       134 ~~~~----~~~--~~~~fD~V~~~d~--y~~-~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      +..-    +..  ......++++-.+  |.. +....+++.+.... |+|.+++.....
T Consensus       178 d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~  235 (334)
T 1rjd_A          178 DITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIG  235 (334)
T ss_dssp             CHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECC
T ss_pred             CcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccC
Confidence            5321    111  2345677787777  654 45778888888876 677765544433

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.88  E-value=0.013  Score=49.08  Aligned_cols=42  Identities=12%  Similarity=0.133  Sum_probs=35.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHH
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNV  105 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~  105 (220)
                      .+..|||+|.|.|.++..++..  +.+|++++. +..++.++...
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~  102 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF  102 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc
Confidence            3578999999999999999975  558999998 56888887654

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.64  E-value=0.024  Score=46.38  Aligned_cols=74  Identities=20%  Similarity=0.154  Sum_probs=49.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeE---EEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNV---ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v---~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ....+++||-||.|-+++.+.+.|.++   .++|. +.+++..+.|..                 ...+...|..+....
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----------------~~~~~~~DI~~i~~~   76 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----------------GKIMYVGDVRSVTQK   76 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----------------TCEEEECCGGGCCHH
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----------------CCceeCCChHHccHH
Confidence            355689999999999999999999764   78898 557777766631                 223444444433211


Q ss_pred             cc-cCCCccEEEEecC
Q 027659          139 KA-VAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~~-~~~~fD~V~~~d~  153 (220)
                      .. ....+|+|+++++
T Consensus        77 ~i~~~~~~Dll~ggpP   92 (295)
T 2qrv_A           77 HIQEWGPFDLVIGGSP   92 (295)
T ss_dssp             HHHHTCCCSEEEECCC
T ss_pred             HhcccCCcCEEEecCC
Confidence            10 1247999999886

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.63  E-value=0.034  Score=45.80  Aligned_cols=68  Identities=19%  Similarity=0.225  Sum_probs=47.9

Q ss_pred             CcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           66 KRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      ++||||-||.|-+++.+-+.|.+ |.++|+ +.+++..+.|..                 . .+...|..+....  .-.
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-----------------~-~~~~~DI~~i~~~--~~~   60 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-----------------A-KLIKGDISKISSD--EFP   60 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-----------------S-EEEESCGGGCCGG--GSC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-----------------C-CcccCChhhCCHh--hCC
Confidence            37999999999999999999998 668898 568888877631                 1 2334343332211  124


Q ss_pred             CccEEEEecC
Q 027659          144 PFDYIIGTDV  153 (220)
Q Consensus       144 ~fD~V~~~d~  153 (220)
                      ..|+++++++
T Consensus        61 ~~D~l~ggpP   70 (331)
T 3ubt_Y           61 KCDGIIGGPP   70 (331)
T ss_dssp             CCSEEECCCC
T ss_pred             cccEEEecCC
Confidence            6899999886

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.35  E-value=0.019  Score=47.51  Aligned_cols=45  Identities=11%  Similarity=-0.008  Sum_probs=39.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHH
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW  107 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~  107 (220)
                      .+|..|||--||+|..++++.++|.+.+++|+ +..++.++.++..
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            36779999999999999999999999999999 5588888777654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.30  E-value=0.028  Score=46.45  Aligned_cols=59  Identities=22%  Similarity=0.178  Sum_probs=44.3

Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-h---hhHHHHHHHHHHhh
Q 027659           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-I---EVLPLLKRNVEWNT  109 (220)
Q Consensus        43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~---~~l~~~~~n~~~n~  109 (220)
                      ..|.+++....        ..+|..|||--||+|..++++.++|.+.+++|+ +   +.++.+++++...+
T Consensus       229 ~~l~~~~i~~~--------~~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          229 AAVIERLVRAL--------SHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHH--------SCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHh--------CCCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            45555555431        236779999999999999999999999999998 6   78888887776543

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=95.23  E-value=0.11  Score=42.51  Aligned_cols=126  Identities=14%  Similarity=0.090  Sum_probs=67.9

Q ss_pred             CcEEEeCCcccHHHHHHHH----hC--Ce--EEEecc---------hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEE
Q 027659           66 KRVIELGAGCGVAGFGMAL----LG--CN--VITTDQ---------IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV  128 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~----~g--~~--v~~~D~---------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~  128 (220)
                      -+|||+|=|||+..++...    .+  .+  .+.+|.         ++....+.+.+.......        ...++.. 
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~--------~~~~v~L-  168 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEY--------EGERLSL-  168 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEE--------ECSSEEE-
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccc--------cCCcEEE-
Confidence            4799999999998765542    23  33  444552         111222222221111000        0123333 


Q ss_pred             EeeeCCCCC-cccc-CCCccEEEEecC---CCCCCh-HHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeE
Q 027659          129 ELDWGNEDH-IKAV-APPFDYIIGTDV---YAEHLL-EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNV  201 (220)
Q Consensus       129 ~ldw~~~~~-~~~~-~~~fD~V~~~d~---y~~~~~-~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v  201 (220)
                      .+-|++... ++.. ...||+|+.-.-   -+++.+ +.+++.+.++++|||++. ++...     ....+.+ ..+|+|
T Consensus       169 ~l~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~la-TYtaa-----g~VRR~L~~aGF~V  242 (308)
T 3vyw_A          169 KVLLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWV-SYSSS-----LSVRKSLLTLGFKV  242 (308)
T ss_dssp             EEEESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEE-ESCCC-----HHHHHHHHHTTCEE
T ss_pred             EEEechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEE-EEeCc-----HHHHHHHHHCCCEE
Confidence            234555432 2222 347999987442   344444 689999999999999865 33321     1223334 459999


Q ss_pred             EEeeC
Q 027659          202 KLVPK  206 (220)
Q Consensus       202 ~~v~~  206 (220)
                      ++++-
T Consensus       243 ~k~~G  247 (308)
T 3vyw_A          243 GSSRE  247 (308)
T ss_dssp             EEEEC
T ss_pred             EecCC
Confidence            98864

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=94.54  E-value=0.077  Score=43.78  Aligned_cols=94  Identities=20%  Similarity=0.203  Sum_probs=58.0

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ....|.+||-.|||. |+..+.+|+ .|++|+++|. ++-++.+++    .+.             .. +  ++..+...
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa-------------~~-~--i~~~~~~~  222 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGA-------------EV-A--VNARDTDP  222 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC-------------SE-E--EETTTSCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCC-------------CE-E--EeCCCcCH
Confidence            345788999999986 888888886 5899999997 455555432    221             11 1  12222110


Q ss_pred             ---ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          138 ---IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       138 ---~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                         .....+.+|+|+-+-.     ....+....++|+++|++++.
T Consensus       223 ~~~~~~~~g~~d~vid~~g-----~~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          223 AAWLQKEIGGAHGVLVTAV-----SPKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             HHHHHHHHSSEEEEEESSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHhCCCCCEEEEeCC-----CHHHHHHHHHHhccCCEEEEe
Confidence               0011236888874422     345667777889999988765

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=93.91  E-value=0.12  Score=42.97  Aligned_cols=97  Identities=14%  Similarity=0.028  Sum_probs=58.8

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ...|.+||=+|+|. |+.++.+|+ .|++ |+++|. ++-++.+++.    ..            .-+.+.. +-.....
T Consensus       177 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----~~------------~~~~~~~-~~~~~~~  239 (363)
T 3m6i_A          177 VRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI----CP------------EVVTHKV-ERLSAEE  239 (363)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH----CT------------TCEEEEC-CSCCHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----ch------------hcccccc-cccchHH
Confidence            44788999999986 888888886 5887 999997 5566666543    11            1112211 0000000


Q ss_pred             ----cc--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          138 ----IK--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       138 ----~~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                          ..  .....+|+|+-+--     -+..+....++++++|++++..
T Consensus       240 ~~~~v~~~t~g~g~Dvvid~~g-----~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          240 SAKKIVESFGGIEPAVALECTG-----VESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             HHHHHHHHTSSCCCSEEEECSC-----CHHHHHHHHHHSCTTCEEEECC
T ss_pred             HHHHHHHHhCCCCCCEEEECCC-----ChHHHHHHHHHhcCCCEEEEEc
Confidence                00  11457999985422     2345677778899999988753

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=93.79  E-value=0.62  Score=38.46  Aligned_cols=94  Identities=19%  Similarity=0.161  Sum_probs=57.1

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC-CCC
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-EDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~-~~~  137 (220)
                      ...|.+||-+|+|. |+..+.+|+ .|++|+++|. ++-++.+++    .+.             . .+  .+..+ ...
T Consensus       166 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa-------------~-~~--~~~~~~~~~  225 (352)
T 1e3j_A          166 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGA-------------D-VT--LVVDPAKEE  225 (352)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC-------------S-EE--EECCTTTSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC-------------C-EE--EcCcccccH
Confidence            44688999999976 777777775 5889999997 455555432    221             1 11  12221 111


Q ss_pred             ---ccc-c----CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          138 ---IKA-V----APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       138 ---~~~-~----~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                         ... .    ...+|+|+-+--     ....+....++++++|++++..
T Consensus       226 ~~~i~~~~~~~~g~g~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          226 ESSIIERIRSAIGDLPNVTIDCSG-----NEKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             HHHHHHHHHHHSSSCCSEEEECSC-----CHHHHHHHHHHSCTTCEEEECS
T ss_pred             HHHHHHHhccccCCCCCEEEECCC-----CHHHHHHHHHHHhcCCEEEEEe
Confidence               110 1    257999985432     2345667777899999887653

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=93.50  E-value=0.38  Score=38.10  Aligned_cols=81  Identities=19%  Similarity=0.236  Sum_probs=51.4

Q ss_pred             CCCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc--hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC
Q 027659           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~  134 (220)
                      +..++|+++|=-|++.|+   ++..+++.|++|+++|.  .+.++.+...+...             ..++.+...|..+
T Consensus        13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~   79 (270)
T 3is3_A           13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL-------------GSDAIAIKADIRQ   79 (270)
T ss_dssp             TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TCCEEEEECCTTS
T ss_pred             CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCC
Confidence            456789999999987665   33344566999998875  33455554444433             2467888887776


Q ss_pred             CCCcc-------ccCCCccEEEEecC
Q 027659          135 EDHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       135 ~~~~~-------~~~~~fD~V~~~d~  153 (220)
                      .+...       ..-++.|+++.+.-
T Consensus        80 ~~~v~~~~~~~~~~~g~id~lvnnAg  105 (270)
T 3is3_A           80 VPEIVKLFDQAVAHFGHLDIAVSNSG  105 (270)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            54321       11247899987755

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=93.21  E-value=0.52  Score=37.33  Aligned_cols=80  Identities=20%  Similarity=0.330  Sum_probs=52.6

Q ss_pred             CCCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      |.+++||.+|==|++.|+   .+..+++.|++|+++|.... +.+.+.++..             ..++.+...|..+..
T Consensus         4 ~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~-~~~~~~~~~~-------------g~~~~~~~~Dv~d~~   69 (247)
T 4hp8_A            4 PFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP-DETLDIIAKD-------------GGNASALLIDFADPL   69 (247)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC-HHHHHHHHHT-------------TCCEEEEECCTTSTT
T ss_pred             CcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH-HHHHHHHHHh-------------CCcEEEEEccCCCHH
Confidence            467799999999998875   44556677999999997321 2222233333             246778888887765


Q ss_pred             Cccc--cCCCccEEEEecC
Q 027659          137 HIKA--VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~--~~~~fD~V~~~d~  153 (220)
                      ....  ...+.|+++.|--
T Consensus        70 ~v~~~~~~g~iDiLVNNAG   88 (247)
T 4hp8_A           70 AAKDSFTDAGFDILVNNAG   88 (247)
T ss_dssp             TTTTSSTTTCCCEEEECCC
T ss_pred             HHHHHHHhCCCCEEEECCC
Confidence            4321  2357899988764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=93.11  E-value=0.17  Score=40.36  Aligned_cols=79  Identities=20%  Similarity=0.244  Sum_probs=55.5

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      +++||.+|==|++.|+   .+..+|+.|++|+++|. ++.++.+.+.++..+             .++.+...|..+.+.
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g-------------~~~~~~~~Dvt~~~~   70 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG-------------KEVLGVKADVSKKKD   70 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHH
Confidence            4689999999998876   34455667999999998 556666666665443             467888888877654


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.|--
T Consensus        71 v~~~~~~~~~~~G~iDiLVNNAG   93 (254)
T 4fn4_A           71 VEEFVRRTFETYSRIDVLCNNAG   93 (254)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCc
Confidence            21       11257899998753

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=93.05  E-value=0.18  Score=40.15  Aligned_cols=79  Identities=24%  Similarity=0.268  Sum_probs=54.0

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      +++||.+|==|++.|+   .+..+++.|++|+++|. ++.++.+.+.+...+             .++.+...|..+.+.
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g-------------~~~~~~~~Dv~~~~~   72 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG-------------YDAHGVAFDVTDELA   72 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------CCEEECCCCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHH
Confidence            5689999999988765   34455677999999998 555555555554433             367777777776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.|--
T Consensus        73 v~~~~~~~~~~~G~iDiLVNNAG   95 (255)
T 4g81_D           73 IEAAFSKLDAEGIHVDILINNAG   95 (255)
T ss_dssp             HHHHHHHHHHTTCCCCEEEECCC
T ss_pred             HHHHHHHHHHHCCCCcEEEECCC
Confidence            21       22457899998764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=92.33  E-value=0.53  Score=38.26  Aligned_cols=88  Identities=16%  Similarity=0.137  Sum_probs=53.1

Q ss_pred             cEEEeCC-cc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           67 RVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        67 ~vLELGc-G~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      +||=.|+ |. |+..+.+|+ .|++|+++|. ++-++.+++    .+.             ...+...+.......  ..
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~----lGa-------------~~vi~~~~~~~~~~~--~~  209 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKS----LGA-------------NRILSRDEFAESRPL--EK  209 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHH----HTC-------------SEEEEGGGSSCCCSS--CC
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCC-------------CEEEecCCHHHHHhh--cC
Confidence            4999998 54 888888886 5899999997 556666653    221             111111111111111  23


Q ss_pred             CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          143 PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       143 ~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ..+|+|+-+--      .+.+....++++++|++++.
T Consensus       210 ~~~d~v~d~~g------~~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          210 QLWAGAIDTVG------DKVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             CCEEEEEESSC------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CCccEEEECCC------cHHHHHHHHHHhcCCEEEEE
Confidence            57898874311      23677777889999988765

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.29  E-value=0.19  Score=41.93  Aligned_cols=91  Identities=18%  Similarity=0.176  Sum_probs=57.2

Q ss_pred             CCCcEEEeC-Ccc-cHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC--
Q 027659           64 KGKRVIELG-AGC-GVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--  136 (220)
Q Consensus        64 ~~~~vLELG-cG~-G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~--  136 (220)
                      .|.+||=.| +|. |+.++.+|+.  |++|+++|. ++-++.+++    .+.             . .+  .+..+..  
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGa-------------d-~v--i~~~~~~~~  230 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGA-------------H-HV--IDHSKPLAA  230 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTC-------------S-EE--ECTTSCHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCC-------------C-EE--EeCCCCHHH
Confidence            577899999 776 9999999974  778999998 555555543    221             1 11  1111110  


Q ss_pred             Ccc-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          137 HIK-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       137 ~~~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ... ...+.+|+|+-+--     -...+....++++++|++++.
T Consensus       231 ~v~~~~~~g~Dvvid~~g-----~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          231 EVAALGLGAPAFVFSTTH-----TDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             HHHTTCSCCEEEEEECSC-----HHHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHhcCCCceEEEECCC-----chhhHHHHHHHhcCCCEEEEE
Confidence            000 12357898885422     345677778889999998865

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=92.26  E-value=0.87  Score=36.13  Aligned_cols=79  Identities=22%  Similarity=0.240  Sum_probs=49.7

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-h-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. + +.++.+...+...             ..++.+...|..+.+
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d~~   94 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA-------------GGRAVAIRADNRDAE   94 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHH
Confidence            4688999999987664   33344566999998865 3 3444444444332             246778887776654


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       ..++.|+++.+.-
T Consensus        95 ~v~~~~~~~~~~~g~iD~lvnnAg  118 (271)
T 3v2g_A           95 AIEQAIRETVEALGGLDILVNSAG  118 (271)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCcEEEECCC
Confidence            3211       1247899998765

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=92.13  E-value=0.73  Score=37.72  Aligned_cols=108  Identities=16%  Similarity=0.161  Sum_probs=68.6

Q ss_pred             CcEEEeCCcccHHHHHHHH-hCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc---c-
Q 027659           66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK---A-  140 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~-~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~---~-  140 (220)
                      ..|++||||.=.-..-+.. .+.+|+=+|.|+++..-++-+...+.         ....+..++..|..+ .-..   . 
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~---------~~~~~~~~v~~Dl~d-~~~~~l~~~  173 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGV---------TPTADRREVPIDLRQ-DWPPALRSA  173 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTC---------CCSSEEEEEECCTTS-CHHHHHHHT
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCC---------CCCCCeEEEecchHh-hHHHHHHhc
Confidence            4699999996544444432 24578888989988887777765432         113566777776655 2110   0 


Q ss_pred             --cCCCccEEEEecC--CCC-CChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          141 --VAPPFDYIIGTDV--YAE-HLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       141 --~~~~fD~V~~~d~--y~~-~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                        .....-++++-.+  |.. +....+++.+...+.||+.+++.+...
T Consensus       174 g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~  221 (310)
T 2uyo_A          174 GFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPL  221 (310)
T ss_dssp             TCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCT
T ss_pred             cCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCC
Confidence              1123446666666  543 456788888888888888888776543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=91.52  E-value=0.32  Score=38.61  Aligned_cols=39  Identities=3%  Similarity=0.007  Sum_probs=31.0

Q ss_pred             CCCccEEEEecCCCCC---------------ChHHHHHHHHHhhCCCcEEEEEE
Q 027659          142 APPFDYIIGTDVYAEH---------------LLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~---------------~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .++||+|+..++|...               ....++..+.++|+|+|.+++..
T Consensus        21 ~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~   74 (260)
T 1g60_A           21 NKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN   74 (260)
T ss_dssp             TTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence            4689999999986544               34567777788999999999875

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.44  E-value=0.89  Score=36.47  Aligned_cols=79  Identities=24%  Similarity=0.237  Sum_probs=48.8

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecch-h-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~-~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|.. + ..+.+.+-++..             ..++.+...|..+.+
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~~  110 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKE-------------GVKCVLLPGDLSDEQ  110 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT-------------TCCEEEEESCTTSHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-------------CCcEEEEECCCCCHH
Confidence            4578999999987654   233444569999999863 3 333333333322             246788887777654


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ..-++.|+++.+--
T Consensus       111 ~v~~~~~~~~~~~g~iD~lvnnAg  134 (291)
T 3ijr_A          111 HCKDIVQETVRQLGSLNILVNNVA  134 (291)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            321       11247899998744

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=91.29  E-value=0.17  Score=41.02  Aligned_cols=58  Identities=12%  Similarity=0.087  Sum_probs=37.6

Q ss_pred             CceEEEEeeeCCCCCccccCCCccEEEEecCCCCC-C--------------------hHHHHHHHHHhhCCCcEEEEEEE
Q 027659          123 GSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEH-L--------------------LEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       123 ~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~-~--------------------~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      .++.+.+.|+.+... ...+++||+|+++++|+.. .                    +..+++.+.++|+|+|.+++...
T Consensus        20 ~~~~i~~gD~~~~l~-~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~   98 (297)
T 2zig_A           20 GVHRLHVGDAREVLA-SFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVG   98 (297)
T ss_dssp             -CEEEEESCHHHHHT-TSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCEEEECcHHHHHh-hCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence            355677766544211 0134689999999996422 1                    23466777888999999988754

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=91.21  E-value=0.4  Score=37.81  Aligned_cols=79  Identities=13%  Similarity=0.117  Sum_probs=52.4

Q ss_pred             CCCCCcEEEeCC----cccH-HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           62 KLKGKRVIELGA----GCGV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        62 ~~~~~~vLELGc----G~G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      .++||++|=-|+    |.|. ++..+++.|++|+++|. ++.++.+.+-++..+            ..++.+...|..+.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~   70 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN------------QPEAHLYQIDVQSD   70 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT------------CSSCEEEECCTTCH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------------CCcEEEEEccCCCH
Confidence            468999999995    3343 45566778999999998 456666655544322            24677888887765


Q ss_pred             CCcc-------ccCCCccEEEEec
Q 027659          136 DHIK-------AVAPPFDYIIGTD  152 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d  152 (220)
                      +...       ..-++.|+++.+-
T Consensus        71 ~~v~~~~~~~~~~~G~iD~lvnnA   94 (256)
T 4fs3_A           71 EEVINGFEQIGKDVGNIDGVYHSI   94 (256)
T ss_dssp             HHHHHHHHHHHHHHCCCSEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEecc
Confidence            4321       1235789988764

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=90.99  E-value=0.13  Score=42.34  Aligned_cols=42  Identities=5%  Similarity=0.150  Sum_probs=33.9

Q ss_pred             CCCccEEEEecCCCCC---------------ChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          142 APPFDYIIGTDVYAEH---------------LLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~---------------~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      .++||+|++.++|+..               .+..++..+.++|+|+|.+++....+
T Consensus        31 ~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           31 EESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            5689999999887544               35677888899999999999987654

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=90.97  E-value=0.38  Score=37.84  Aligned_cols=80  Identities=20%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|. .+.++.+...+...             ..++.+...|..+..
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~~   74 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA-------------GGKAIGLECNVTDEQ   74 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHH
Confidence            45688999999987654   23344566999999997 44555555444433             246788887777654


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       .-++.|+++.+.-
T Consensus        75 ~v~~~~~~~~~~~g~id~lv~nAg   98 (256)
T 3gaf_A           75 HREAVIKAALDQFGKITVLVNNAG   98 (256)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            3211       1247899998765

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=90.75  E-value=1.8  Score=34.23  Aligned_cols=79  Identities=18%  Similarity=0.223  Sum_probs=47.7

Q ss_pred             CCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+++++|=.|++.| +|..+    ++.|++|++++. ++.++.+...+...+.           ..++.+...|..+.+.
T Consensus        30 l~~k~vlVTGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~Dl~~~~~   97 (279)
T 1xg5_A           30 WRDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-----------PGTLIPYRCDLSNEED   97 (279)
T ss_dssp             GTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------SSEEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCC-----------CceEEEEEecCCCHHH
Confidence            57888999987654 44444    345899999987 4444444444433221           2356777777766543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       ..+.+|+|+.+.-
T Consensus        98 v~~~~~~~~~~~g~iD~vi~~Ag  120 (279)
T 1xg5_A           98 ILSMFSAIRSQHSGVDICINNAG  120 (279)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCC
T ss_pred             HHHHHHHHHHhCCCCCEEEECCC
Confidence            211       1136899988754

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=90.73  E-value=0.9  Score=41.22  Aligned_cols=58  Identities=16%  Similarity=0.183  Sum_probs=37.8

Q ss_pred             CCCccEEEEecC---CCCCCh-HHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEEEee
Q 027659          142 APPFDYIIGTDV---YAEHLL-EPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVKLVP  205 (220)
Q Consensus       142 ~~~fD~V~~~d~---y~~~~~-~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~~v~  205 (220)
                      ...+|.++.-..   ++++.+ ..++..+.+++++|+.+.- +.. .    ....+.+ +.+|.+..++
T Consensus       169 ~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t-~~~-~----~~vr~~l~~aGf~~~~~~  231 (689)
T 3pvc_A          169 NNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST-FTA-A----GFVRRGLQQAGFNVTKVK  231 (689)
T ss_dssp             TTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE-SCC-C----HHHHHHHHHTTCEEEEEE
T ss_pred             CCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe-ccC-c----HHHHHHHHhCCeEEEecc
Confidence            468999998543   555554 6788999999999987553 211 1    1222333 5689988876

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=90.52  E-value=0.52  Score=37.18  Aligned_cols=79  Identities=18%  Similarity=0.184  Sum_probs=52.6

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.+...             ..++.+...|..+.+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~   74 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT-------------GRRALSVGTDITDDAQ   74 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHHH
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHH
Confidence            4578999999997765   33445566999999997 45555555544433             2467888888777543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ...++.|+++.+--
T Consensus        75 v~~~~~~~~~~~g~id~lv~nAg   97 (264)
T 3ucx_A           75 VAHLVDETMKAYGRVDVVINNAF   97 (264)
T ss_dssp             HHHHHHHHHHHTSCCSEEEECCC
T ss_pred             HHHHHHHHHHHcCCCcEEEECCC
Confidence            21       11357899998763

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=90.16  E-value=0.63  Score=36.98  Aligned_cols=82  Identities=16%  Similarity=0.210  Sum_probs=50.7

Q ss_pred             CCCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      +..++|+++|=-|++.|+   ++..+++.|++|+++|. .+.++.+...+....            ..++.+...|..+.
T Consensus        22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~~~   89 (277)
T 4fc7_A           22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGAT------------GRRCLPLSMDVRAP   89 (277)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCH
T ss_pred             ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCcEEEEEcCCCCH
Confidence            456789999999987654   23334456899999997 444433333332211            24678888887765


Q ss_pred             CCcc-------ccCCCccEEEEecC
Q 027659          136 DHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d~  153 (220)
                      ....       ..-++.|+++.+.-
T Consensus        90 ~~v~~~~~~~~~~~g~id~lv~nAg  114 (277)
T 4fc7_A           90 PAVMAAVDQALKEFGRIDILINCAA  114 (277)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCc
Confidence            4321       11247899998764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=90.15  E-value=0.4  Score=38.24  Aligned_cols=79  Identities=19%  Similarity=0.285  Sum_probs=51.4

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...             ..++.+...|..+.+.
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~d~~~   95 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV-------------GGKALPIRCDVTQPDQ   95 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT-------------TCCCEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeEEEEEcCCCCHHH
Confidence            4578999999987654   23344456999999997 45555555554433             2367788877776543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-++.|+++.+--
T Consensus        96 v~~~~~~~~~~~g~iD~lvnnAg  118 (276)
T 3r1i_A           96 VRGMLDQMTGELGGIDIAVCNAG  118 (276)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1247899998765

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=90.09  E-value=0.45  Score=37.08  Aligned_cols=79  Identities=22%  Similarity=0.318  Sum_probs=50.4

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...             ..++.+...|..+...
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~   72 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD-------------GGTAISVAVDVSDPES   72 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCEEEEEECCTTSHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence            4578899999986654   23334456999999997 45555555544432             2467788877776543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       ..++.|+++.+.-
T Consensus        73 ~~~~~~~~~~~~g~id~li~~Ag   95 (253)
T 3qiv_A           73 AKAMADRTLAEFGGIDYLVNNAA   95 (253)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1247899998754

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=90.08  E-value=0.45  Score=37.44  Aligned_cols=80  Identities=26%  Similarity=0.312  Sum_probs=51.9

Q ss_pred             CCCCCcEEEeCC-cccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGA-GCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGc-G~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .++++++|=.|+ |.|+   ++..+++.|++|+++|. .+.++.+...+....            ..++.+...|..+.+
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~~   86 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG------------LGRVEAVVCDVTSTE   86 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC------------SSCEEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC------------CCceEEEEeCCCCHH
Confidence            457889999998 6655   33445567999999997 445554444443221            247888888887654


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       ..++.|+++.+.-
T Consensus        87 ~v~~~~~~~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           87 AVDALITQTVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCcEEEECCC
Confidence            3211       1247899998765

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=90.01  E-value=0.55  Score=36.63  Aligned_cols=80  Identities=23%  Similarity=0.323  Sum_probs=49.2

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ....++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...             ..++.+...|..+.+
T Consensus         3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~~~~   69 (247)
T 2jah_A            3 SALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA-------------GAKVHVLELDVADRQ   69 (247)
T ss_dssp             CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHH
Confidence            34578899999987553   22334456999999997 44555444444322             236777787776654


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       .-+..|+++.+--
T Consensus        70 ~~~~~~~~~~~~~g~id~lv~nAg   93 (247)
T 2jah_A           70 GVDAAVASTVEALGGLDILVNNAG   93 (247)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            3211       1247899988754

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=89.95  E-value=0.49  Score=38.21  Aligned_cols=79  Identities=14%  Similarity=0.169  Sum_probs=51.3

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++|+++|=.|++.|+   ++..+++.|++|+++|. .+.++.+...+...+             .++.+...|..+.+.
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~   94 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG-------------FDAHGVVCDVRHLDE   94 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEEccCCCHHH
Confidence            3578899999987654   23334456999999997 455555555444332             467888887776543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       ..+..|+++.+.-
T Consensus        95 v~~~~~~~~~~~g~id~lvnnAg  117 (301)
T 3tjr_A           95 MVRLADEAFRLLGGVDVVFSNAG  117 (301)
T ss_dssp             HHHHHHHHHHHHSSCSEEEECCC
T ss_pred             HHHHHHHHHHhCCCCCEEEECCC
Confidence            211       1247899998765

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=89.88  E-value=2.6  Score=32.93  Aligned_cols=80  Identities=13%  Similarity=0.079  Sum_probs=49.9

Q ss_pred             CCCCCcEEEeCCc--ccH---HHHHHHHhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           62 KLKGKRVIELGAG--CGV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        62 ~~~~~~vLELGcG--~G~---~~l~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      .++++++|=.|++  .|+   ++..+++.|++|++++.. ...+.+++-....+            ..++.+...|..+.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~   71 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD------------RNDSIILPCDVTND   71 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS------------SCCCEEEECCCSSS
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC------------CCCceEEeCCCCCH
Confidence            4578899999976  444   344555679999999863 34444433333221            23678888888776


Q ss_pred             CCccc-------cCCCccEEEEecC
Q 027659          136 DHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~~-------~~~~fD~V~~~d~  153 (220)
                      +....       ..++.|+++.+.-
T Consensus        72 ~~v~~~~~~~~~~~g~id~li~~Ag   96 (266)
T 3oig_A           72 AEIETCFASIKEQVGVIHGIAHCIA   96 (266)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCeeEEEEccc
Confidence            53221       1247899888754

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=89.64  E-value=0.91  Score=35.81  Aligned_cols=80  Identities=19%  Similarity=0.285  Sum_probs=51.7

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+....            ..++.+...|..+.+.
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~~~   84 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQF------------GTDVHTVAIDLAEPDA   84 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTSTTH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCcEEEEEecCCCHHH
Confidence            3578899999987654   33344456999999997 445555544444321            2468888888877654


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       ..++.|+++.+.-
T Consensus        85 v~~~~~~~~~~~g~id~lv~nAg  107 (266)
T 4egf_A           85 PAELARRAAEAFGGLDVLVNNAG  107 (266)
T ss_dssp             HHHHHHHHHHHHTSCSEEEEECC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            221       1247899988765

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=89.51  E-value=0.42  Score=37.53  Aligned_cols=77  Identities=29%  Similarity=0.258  Sum_probs=51.6

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+..
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~v   71 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG-------------GRIVARSLDARNEDEV   71 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT-------------CEEEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CeEEEEECcCCCHHHH
Confidence            478899999988764   23344456999999997 555555555554432             4678888887765432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       .. ++.|+++.+.-
T Consensus        72 ~~~~~~~~~~-g~id~lv~nAg   92 (252)
T 3h7a_A           72 TAFLNAADAH-APLEVTIFNVG   92 (252)
T ss_dssp             HHHHHHHHHH-SCEEEEEECCC
T ss_pred             HHHHHHHHhh-CCceEEEECCC
Confidence            1       12 57899988765

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=89.44  E-value=3.3  Score=33.09  Aligned_cols=78  Identities=19%  Similarity=0.151  Sum_probs=48.5

Q ss_pred             CCCCCcEEEeCCcc--cH---HHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           62 KLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        62 ~~~~~~vLELGcG~--G~---~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      .++++++|=-|++.  |+   ++..+++.|++|++++..+ ..+.+++-....              .++.+...|..+.
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~d~   93 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL--------------GAFVAGHCDVADA   93 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH--------------TCEEEEECCTTCH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc--------------CCceEEECCCCCH
Confidence            46889999999763  33   4445567799999998743 333333322222              2567777777765


Q ss_pred             CCcc-------ccCCCccEEEEecC
Q 027659          136 DHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d~  153 (220)
                      +...       ..-++.|+++.+--
T Consensus        94 ~~v~~~~~~~~~~~g~iD~lVnnAG  118 (293)
T 3grk_A           94 ASIDAVFETLEKKWGKLDFLVHAIG  118 (293)
T ss_dssp             HHHHHHHHHHHHHTSCCSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCc
Confidence            4321       11257899998765

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=89.39  E-value=0.32  Score=38.25  Aligned_cols=79  Identities=29%  Similarity=0.326  Sum_probs=49.6

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...             ..++.+...|..+.+.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~   69 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF-------------PGQILTVQMDVRNTDD   69 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS-------------TTCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHH
Confidence            4578899999987654   23344456999999997 44555444333221             2467888888776543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       ..++.|+++.+.-
T Consensus        70 v~~~~~~~~~~~g~id~lv~nAg   92 (257)
T 3imf_A           70 IQKMIEQIDEKFGRIDILINNAA   92 (257)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1247899988764

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=89.32  E-value=0.61  Score=37.13  Aligned_cols=79  Identities=18%  Similarity=0.237  Sum_probs=50.9

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...             ..++.+...|..+...
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~   96 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS-------------GGTAQELAGDLSEAGA   96 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT-------------TCCEEEEECCTTSTTH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc-------------CCeEEEEEecCCCHHH
Confidence            3578899999987654   23344456999999997 44555554444433             2467888888776653


Q ss_pred             ccc------cCCCccEEEEecC
Q 027659          138 IKA------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~------~~~~fD~V~~~d~  153 (220)
                      ...      ..++.|+++.+.-
T Consensus        97 ~~~~~~~~~~~g~iD~lvnnAg  118 (275)
T 4imr_A           97 GTDLIERAEAIAPVDILVINAS  118 (275)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCC
Confidence            211      0157899998765

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=89.11  E-value=0.59  Score=37.13  Aligned_cols=79  Identities=15%  Similarity=0.110  Sum_probs=50.3

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+...
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~~~   91 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG-------------LEGRGAVLNVNDATA   91 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT-------------CCCEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CcEEEEEEeCCCHHH
Confidence            4578889988876654   33344566999999997 445555555554433             356777777766543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-++.|+++.+.-
T Consensus        92 v~~~~~~~~~~~g~iD~lvnnAg  114 (270)
T 3ftp_A           92 VDALVESTLKEFGALNVLVNNAG  114 (270)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1247899998764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=88.99  E-value=0.58  Score=37.23  Aligned_cols=80  Identities=20%  Similarity=0.288  Sum_probs=49.9

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|..+.++.+...+...             ..++.+...|..+.+.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~~~   93 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADG-------------GGSAEAVVADLADLEG   93 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTT-------------TCEEEEEECCTTCHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHH
Confidence            45688999999987654   3334456699999998644333333333222             2467888877776543


Q ss_pred             ccc------cCCCccEEEEecC
Q 027659          138 IKA------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~------~~~~fD~V~~~d~  153 (220)
                      ...      ..++.|+++.+.-
T Consensus        94 v~~~~~~~~~~g~iD~lv~nAg  115 (273)
T 3uf0_A           94 AANVAEELAATRRVDVLVNNAG  115 (273)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHhcCCCcEEEECCC
Confidence            211      1147899998765

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=88.85  E-value=0.51  Score=39.17  Aligned_cols=40  Identities=15%  Similarity=0.091  Sum_probs=33.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHH
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLK  102 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~  102 (220)
                      .+|..++|..||.|--+..+++. +  .+|++.|. +++++.++
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~   99 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK   99 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH
Confidence            46789999999999999999865 4  47999998 67888874

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=88.79  E-value=2.2  Score=33.84  Aligned_cols=77  Identities=23%  Similarity=0.305  Sum_probs=46.3

Q ss_pred             CCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ++++++|=.|++.|+ |..+    ++.|++|++++. ++ ..+.+.+.+...             ..++.+...|..+.+
T Consensus        27 ~~~k~vlVTGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~   92 (283)
T 1g0o_A           27 LEGKVALVTGAGRGI-GREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN-------------GSDAACVKANVGVVE   92 (283)
T ss_dssp             CTTCEEEETTTTSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHH
T ss_pred             CCCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh-------------CCCeEEEEcCCCCHH
Confidence            467889988886553 4443    355999999886 33 344443333332             236777777766544


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       .-+..|+++.+--
T Consensus        93 ~~~~~~~~~~~~~g~iD~lv~~Ag  116 (283)
T 1g0o_A           93 DIVRMFEEAVKIFGKLDIVCSNSG  116 (283)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            2211       1247899988765

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=88.59  E-value=0.64  Score=36.75  Aligned_cols=80  Identities=20%  Similarity=0.256  Sum_probs=50.8

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ..+++++||=.|++.|+   ++..+++.|++|++++. ++ ..+.+...++..+             .++.+...|..+.
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~   91 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKG-------------YKAAVIKFDAASE   91 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC-------------CceEEEECCCCCH
Confidence            45688999999987654   23344456999999886 33 4455544444332             4678888777665


Q ss_pred             CCcc-------ccCCCccEEEEecC
Q 027659          136 DHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d~  153 (220)
                      ....       ...++.|+++.+.-
T Consensus        92 ~~v~~~~~~~~~~~g~id~li~nAg  116 (271)
T 4iin_A           92 SDFIEAIQTIVQSDGGLSYLVNNAG  116 (271)
T ss_dssp             HHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCC
Confidence            4321       11247899998765

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=88.58  E-value=0.57  Score=39.43  Aligned_cols=97  Identities=26%  Similarity=0.252  Sum_probs=58.1

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ...|.+||-+|||. |+.++.+|+ .|+ +|+++|. ++-++.+++    .+.               .  ..+..+...
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa---------------~--~i~~~~~~~  241 (398)
T 2dph_A          183 VKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AGF---------------E--TIDLRNSAP  241 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TTC---------------E--EEETTSSSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---------------c--EEcCCCcch
Confidence            44788999999987 888888886 588 8999997 455554432    111               2  123322211


Q ss_pred             ----cc--ccCCCccEEEEecCCCC---------CChHHHHHHHHHhhCCCcEEEEE
Q 027659          138 ----IK--AVAPPFDYIIGTDVYAE---------HLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       138 ----~~--~~~~~fD~V~~~d~y~~---------~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                          ..  .....+|+|+-+--...         ......+....++|+++|++++.
T Consensus       242 ~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          242 LRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             HHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence                10  01236999985533110         01223567777888999987654

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=88.56  E-value=0.5  Score=41.22  Aligned_cols=41  Identities=29%  Similarity=0.316  Sum_probs=34.4

Q ss_pred             CCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHH
Q 027659           65 GKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~  105 (220)
                      ..+++||-||.|-+++.+.+.|.+ |.++|. +.+++..+.|.
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~  130 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANH  130 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHS
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhc
Confidence            458999999999999999988988 778998 55777777764

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=88.55  E-value=0.91  Score=35.57  Aligned_cols=79  Identities=15%  Similarity=0.108  Sum_probs=48.1

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...             ..++.+...|..+.+.
T Consensus         6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~   72 (260)
T 2ae2_A            6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK-------------GFKVEASVCDLSSRSE   72 (260)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCEEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHH
Confidence            3578899999986554   22233456999999997 44444443333322             2357777877766543


Q ss_pred             ccc-------cC-CCccEEEEecC
Q 027659          138 IKA-------VA-PPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~-~~fD~V~~~d~  153 (220)
                      ...       .- +..|+++.+--
T Consensus        73 ~~~~~~~~~~~~~g~id~lv~~Ag   96 (260)
T 2ae2_A           73 RQELMNTVANHFHGKLNILVNNAG   96 (260)
T ss_dssp             HHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCCEEEECCC
Confidence            211       11 57899998765

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=88.45  E-value=1.4  Score=34.02  Aligned_cols=78  Identities=17%  Similarity=0.214  Sum_probs=49.5

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++++|=.|++.|+   ++..+++.|++|++++. ++.++.+...+...+             .++.+...|..+.+..
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~~   69 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG-------------FKARGLVLNISDIESI   69 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------------CceEEEEecCCCHHHH
Confidence            367889988876554   23344456999999997 445555544444332             3678888777665432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ...++.|+++.+.-
T Consensus        70 ~~~~~~~~~~~~~id~li~~Ag   91 (247)
T 3lyl_A           70 QNFFAEIKAENLAIDILVNNAG   91 (247)
T ss_dssp             HHHHHHHHHTTCCCSEEEECCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            1       12357899998765

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=88.45  E-value=1.2  Score=35.44  Aligned_cols=79  Identities=13%  Similarity=0.074  Sum_probs=50.7

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc--hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...++++|=-|++.|+   ++..+++.|++|+++|.  ++.++.+...+...             ..++.+...|..+.+
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~~   92 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL-------------GARVIFLRADLADLS   92 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT-------------TCCEEEEECCTTSGG
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHH
Confidence            4578889999987654   33344566999999985  34444444444433             246888888887765


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       .-++.|+++.+.-
T Consensus        93 ~v~~~~~~~~~~~g~iD~lvnnAg  116 (280)
T 4da9_A           93 SHQATVDAVVAEFGRIDCLVNNAG  116 (280)
T ss_dssp             GHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            4321       1247899988754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=88.41  E-value=4.2  Score=30.96  Aligned_cols=76  Identities=16%  Similarity=0.123  Sum_probs=44.2

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCce-EEEEeeeCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSI-QAVELDWGN  134 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v-~~~~ldw~~  134 (220)
                      ..+++++||=.|+. |.+|..++    +.|.+|++++. ++.++.+..                   ..+ .+...|.. 
T Consensus        17 ~~l~~~~ilVtGat-G~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-------------------~~~~~~~~~Dl~-   75 (236)
T 3e8x_A           17 LYFQGMRVLVVGAN-GKVARYLLSELKNKGHEPVAMVRNEEQGPELRE-------------------RGASDIVVANLE-   75 (236)
T ss_dssp             ----CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-------------------TTCSEEEECCTT-
T ss_pred             cCcCCCeEEEECCC-ChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh-------------------CCCceEEEcccH-
Confidence            45688999999864 44555444    45889999997 443332211                   145 67777766 


Q ss_pred             CCCccccCCCccEEEEecC-CCCCC
Q 027659          135 EDHIKAVAPPFDYIIGTDV-YAEHL  158 (220)
Q Consensus       135 ~~~~~~~~~~fD~V~~~d~-y~~~~  158 (220)
                       +.+...-...|+|+.+-. .....
T Consensus        76 -~~~~~~~~~~D~vi~~ag~~~~~~   99 (236)
T 3e8x_A           76 -EDFSHAFASIDAVVFAAGSGPHTG   99 (236)
T ss_dssp             -SCCGGGGTTCSEEEECCCCCTTSC
T ss_pred             -HHHHHHHcCCCEEEECCCCCCCCC
Confidence             323223357899998766 44333

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=88.37  E-value=2.5  Score=31.09  Aligned_cols=39  Identities=18%  Similarity=0.100  Sum_probs=25.3

Q ss_pred             CCCCCcEEEeCCcc-cHH-HHHHHHh-CCeEEEecc-hhhHHH
Q 027659           62 KLKGKRVIELGAGC-GVA-GFGMALL-GCNVITTDQ-IEVLPL  100 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~-~l~la~~-g~~v~~~D~-~~~l~~  100 (220)
                      ...+.+|+=+|+|. |.. +..+... |.+|+++|. ++.++.
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~   78 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQ   78 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHH
Confidence            34567899999875 432 2333456 889999997 444443

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=88.29  E-value=0.88  Score=35.95  Aligned_cols=79  Identities=19%  Similarity=0.164  Sum_probs=49.7

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ..+.++++|=.|++.| +|..++    +.|++|+++|. ++.++.+...+...             ..++.+...|..+.
T Consensus        27 ~~l~~k~vlITGasgg-IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dl~~~   92 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL-------------GAKVHTFVVDCSNR   92 (272)
T ss_dssp             CCCTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCH
T ss_pred             cccCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc-------------CCeEEEEEeeCCCH
Confidence            4467889999997654 444444    45899999997 44444444444332             23678888777765


Q ss_pred             CCcc-------ccCCCccEEEEecC
Q 027659          136 DHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d~  153 (220)
                      +...       ...+.+|+|+.+.-
T Consensus        93 ~~v~~~~~~~~~~~g~iD~li~~Ag  117 (272)
T 1yb1_A           93 EDIYSSAKKVKAEIGDVSILVNNAG  117 (272)
T ss_dssp             HHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred             HHHHHHHHHHHHHCCCCcEEEECCC
Confidence            4321       11247899998765

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=88.25  E-value=1  Score=35.59  Aligned_cols=79  Identities=15%  Similarity=0.085  Sum_probs=48.3

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...             ..++.+...|..+.+.
T Consensus        18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~   84 (273)
T 1ae1_A           18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK-------------GLNVEGSVCDLLSRTE   84 (273)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEECCCCCHHH
Confidence            3578899999986554   22233456999999997 44444443333322             2367777877766543


Q ss_pred             ccc--------cCCCccEEEEecC
Q 027659          138 IKA--------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~--------~~~~fD~V~~~d~  153 (220)
                      ...        ..+..|+++.+--
T Consensus        85 ~~~~~~~~~~~~~g~id~lv~nAg  108 (273)
T 1ae1_A           85 RDKLMQTVAHVFDGKLNILVNNAG  108 (273)
T ss_dssp             HHHHHHHHHHHTTSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCcEEEECCC
Confidence            211        1167899998764

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=88.18  E-value=1  Score=37.93  Aligned_cols=105  Identities=13%  Similarity=0.145  Sum_probs=65.0

Q ss_pred             CCcEEEeCCcccHHHHHHHHhCCeEEEe-cchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           65 GKRVIELGAGCGVAGFGMALLGCNVITT-DQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g~~v~~~-D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      +.+||.++-+-|.+++.++. +.+|+.+ |.--....    ++.|+.             .+.. ...|.      ..+.
T Consensus        46 ~~~~l~~n~~~g~~~~~~~~-~~~~~~~~~~~~~~~~----l~~~~~-------------~~~~-~~~~~------~~~~  100 (381)
T 3dmg_A           46 GERALDLNPGVGWGSLPLEG-RMAVERLETSRAAFRC----LTASGL-------------QARL-ALPWE------AAAG  100 (381)
T ss_dssp             SSEEEESSCTTSTTTGGGBT-TBEEEEEECBHHHHHH----HHHTTC-------------CCEE-CCGGG------SCTT
T ss_pred             CCcEEEecCCCCccccccCC-CCceEEEeCcHHHHHH----HHHcCC-------------Cccc-cCCcc------CCcC
Confidence            35899999999987776642 3566554 54111122    556665             1211 11121      2356


Q ss_pred             CccEEEEecC-CC-CCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh
Q 027659          144 PFDYIIGTDV-YA-EHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  196 (220)
Q Consensus       144 ~fD~V~~~d~-y~-~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~  196 (220)
                      .||+|+.--+ .. ....+..+..+...|++||.++++..++..  .+.+.+.++
T Consensus       101 ~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~g--~~~~~~~~~  153 (381)
T 3dmg_A          101 AYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAGDKNKG--FERYFKEAR  153 (381)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEEEGGGT--HHHHHHHHH
T ss_pred             CCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEEccHHH--HHHHHHHHH
Confidence            8999986555 21 123567777788889999999999887653  455555554

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=88.15  E-value=0.48  Score=37.69  Aligned_cols=79  Identities=16%  Similarity=0.225  Sum_probs=50.2

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...             ..++.+...|..+.+.
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d~~~   89 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNV-------------GHDAEAVAFDVTSESE   89 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT-------------TCCEEECCCCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHHH
Confidence            4578899999976654   33344456999999997 44555444444332             2367777777766543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ...++.|+++.+.-
T Consensus        90 v~~~~~~~~~~~g~iD~lv~nAg  112 (271)
T 4ibo_A           90 IIEAFARLDEQGIDVDILVNNAG  112 (271)
T ss_dssp             HHHHHHHHHHHTCCCCEEEECCC
T ss_pred             HHHHHHHHHHHCCCCCEEEECCC
Confidence            21       12347899998765

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=88.13  E-value=1.4  Score=36.16  Aligned_cols=89  Identities=18%  Similarity=0.120  Sum_probs=53.9

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ....|.+||=+|+|. |+..+.+|+ .|++|+++|. ++-++.+++    .+.            ..+ +     .+.+.
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa------------~~v-~-----~~~~~  230 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGV------------KHF-Y-----TDPKQ  230 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTC------------SEE-E-----SSGGG
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCC------------Cee-c-----CCHHH
Confidence            345788999999986 888887775 5899999997 555555543    221            111 1     12111


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      .   ...+|+|+-+-- ...    .+....++++++|++++.
T Consensus       231 ~---~~~~D~vid~~g-~~~----~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          231 C---KEELDFIISTIP-THY----DLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             C---CSCEEEEEECCC-SCC----CHHHHHTTEEEEEEEEEC
T ss_pred             H---hcCCCEEEECCC-cHH----HHHHHHHHHhcCCEEEEE
Confidence            1   227888874322 111    234555677888887765

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=88.11  E-value=0.64  Score=36.89  Aligned_cols=77  Identities=14%  Similarity=0.208  Sum_probs=49.1

Q ss_pred             CCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+..+|..+.+...
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dv~d~~~v~   69 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG-------------GTALAQVLDVTDRHSVA   69 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEcCCCCHHHHH
Confidence            56788988887654   23344456999999997 455555555444332             36777787777654321


Q ss_pred             c-------cCCCccEEEEecC
Q 027659          140 A-------VAPPFDYIIGTDV  153 (220)
Q Consensus       140 ~-------~~~~fD~V~~~d~  153 (220)
                      .       .-++.|+++.+.-
T Consensus        70 ~~~~~~~~~~g~iD~lVnnAG   90 (264)
T 3tfo_A           70 AFAQAAVDTWGRIDVLVNNAG   90 (264)
T ss_dssp             HHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHcCCCCEEEECCC
Confidence            1       1247899998765

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=88.10  E-value=0.61  Score=36.76  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=50.2

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+            ..++.+...|..+.+.
T Consensus         7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~~~   74 (262)
T 3pk0_A            7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG------------SGKVIGVQTDVSDRAQ   74 (262)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS------------SSCEEEEECCTTSHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC------------CCcEEEEEcCCCCHHH
Confidence            4578899999987654   23334456999999997 445554444443221            2467888888776543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-++.|+++.+--
T Consensus        75 v~~~~~~~~~~~g~id~lvnnAg   97 (262)
T 3pk0_A           75 CDALAGRAVEEFGGIDVVCANAG   97 (262)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCC
Confidence            211       1247899998764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=88.05  E-value=1.3  Score=34.65  Aligned_cols=76  Identities=16%  Similarity=0.223  Sum_probs=47.6

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+   +             .++.+...|..+...
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~~~~   68 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G-------------PRVHALRSDIADLNE   68 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G-------------GGEEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------------CcceEEEccCCCHHH
Confidence            4578999999987654   23344556999999997 44444333322   1             256777777766543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ...++.|+++.+.-
T Consensus        69 v~~~~~~~~~~~g~id~lv~nAg   91 (255)
T 4eso_A           69 IAVLGAAAGQTLGAIDLLHINAG   91 (255)
T ss_dssp             HHHHHHHHHHHHSSEEEEEECCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCC
Confidence            21       11247899988754

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=88.03  E-value=1.8  Score=33.18  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=46.7

Q ss_pred             CCcEEEeCCcccHHHHH----HHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           65 GKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++++|=.|++.| +|..    +++.|++|++++. .+-++.+...+....            ..++.+...|..+.+...
T Consensus         2 ~k~vlITGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~v~   68 (235)
T 3l77_A            2 MKVAVITGASRG-IGEAIARALARDGYALALGARSVDRLEKIAHELMQEQ------------GVEVFYHHLDVSKAESVE   68 (235)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHHHHH
T ss_pred             CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCeEEEEEeccCCHHHHH
Confidence            567888887654 3443    3456999999997 445554444443221            246788888877654322


Q ss_pred             c-------cCCCccEEEEecC
Q 027659          140 A-------VAPPFDYIIGTDV  153 (220)
Q Consensus       140 ~-------~~~~fD~V~~~d~  153 (220)
                      .       ..++.|+++.+.-
T Consensus        69 ~~~~~~~~~~g~id~li~~Ag   89 (235)
T 3l77_A           69 EFSKKVLERFGDVDVVVANAG   89 (235)
T ss_dssp             HHCC-HHHHHSSCSEEEECCC
T ss_pred             HHHHHHHHhcCCCCEEEECCc
Confidence            1       1137899988765

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=88.02  E-value=0.89  Score=37.06  Aligned_cols=92  Identities=16%  Similarity=0.149  Sum_probs=52.1

Q ss_pred             CCC-cEEEeCC-cc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGK-RVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~-~vLELGc-G~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .|. +||=.|+ |. |+..+.+|+ .|++|++++. ++-++.+++    .+.            ..+ +..-+.. ....
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa------------~~v-~~~~~~~-~~~~  210 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGA------------SEV-ISREDVY-DGTL  210 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTC------------SEE-EEHHHHC-SSCC
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC------------cEE-EECCCch-HHHH
Confidence            453 7999997 54 888877775 5899999987 455555543    221            111 1110110 0101


Q ss_pred             c-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          139 K-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       139 ~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      . .....+|+|+-+--     - +.+....++++++|++++.
T Consensus       211 ~~~~~~~~d~vid~~g-----~-~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          211 KALSKQQWQGAVDPVG-----G-KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             CSSCCCCEEEEEESCC-----T-HHHHHHHTTEEEEEEEEEC
T ss_pred             HHhhcCCccEEEECCc-----H-HHHHHHHHhhcCCCEEEEE
Confidence            0 11346898874422     1 2456666778899987764

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=88.01  E-value=1.1  Score=35.32  Aligned_cols=82  Identities=11%  Similarity=-0.002  Sum_probs=51.7

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+.....           ..++.+...|..+..
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dv~~~~   72 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFP-----------GARLFASVCDVLDAL   72 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHST-----------TCCEEEEECCTTCHH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-----------CceEEEEeCCCCCHH
Confidence            45688999999987764   23344556999999997 4555555544443111           235788887777654


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ..-++.|+++.+.-
T Consensus        73 ~v~~~~~~~~~~~g~id~lvnnAg   96 (265)
T 3lf2_A           73 QVRAFAEACERTLGCASILVNNAG   96 (265)
T ss_dssp             HHHHHHHHHHHHHCSCSEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            321       11247899988765

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=88.01  E-value=1.3  Score=36.12  Aligned_cols=81  Identities=20%  Similarity=0.232  Sum_probs=52.0

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+.+++||=-|++.|+   +...+++.|++|++++. ++.++.+...+...+.           ..++.+..+|..+...
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dl~~~~~   73 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGS-----------GPEVMGVQLDVASREG   73 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEECCTTCHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CCeEEEEECCCCCHHH
Confidence            4578899999987665   23334456999999997 4555555555544321           2367888888776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ...+..|+++.+.-
T Consensus        74 v~~~~~~~~~~~g~id~lv~nAg   96 (319)
T 3ioy_A           74 FKMAADEVEARFGPVSILCNNAG   96 (319)
T ss_dssp             HHHHHHHHHHHTCCEEEEEECCC
T ss_pred             HHHHHHHHHHhCCCCCEEEECCC
Confidence            21       11257899988765

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=87.99  E-value=1.4  Score=34.90  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=48.1

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc--hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+++++|=-|++.|+   ++..+++.|++|++++.  .+.++.+...+...             ..++.+...|..+.+.
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~~~~   91 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA-------------GGKALTAQADVSDPAA   91 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT-------------TCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCeEEEEEcCCCCHHH
Confidence            367889999987764   33345567999988754  33555554444433             2467888888776543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-++.|+++.+.-
T Consensus        92 v~~~~~~~~~~~g~iD~lvnnAG  114 (267)
T 3u5t_A           92 VRRLFATAEEAFGGVDVLVNNAG  114 (267)
T ss_dssp             HHHHHHHHHHHHSCEEEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1247899988765

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=87.81  E-value=1.1  Score=35.05  Aligned_cols=81  Identities=21%  Similarity=0.216  Sum_probs=49.8

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee--CC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW--GN  134 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw--~~  134 (220)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+....            ..++.+...|.  .+
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~   75 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEET------------GRQPQWFILDLLTCT   75 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SCCCEEEECCTTTCC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc------------CCCceEEEEecccCC
Confidence            45688999999987654   23334456999999997 445555544444332            13567777776  43


Q ss_pred             CCCcc-------ccCCCccEEEEecC
Q 027659          135 EDHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       135 ~~~~~-------~~~~~fD~V~~~d~  153 (220)
                      .+...       ...++.|+++.+.-
T Consensus        76 ~~~~~~~~~~~~~~~g~id~lv~nAg  101 (252)
T 3f1l_A           76 SENCQQLAQRIAVNYPRLDGVLHNAG  101 (252)
T ss_dssp             HHHHHHHHHHHHHHCSCCSEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            32211       12347899998754

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=87.68  E-value=2.4  Score=33.39  Aligned_cols=80  Identities=24%  Similarity=0.228  Sum_probs=49.7

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecch-------------hhHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (220)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|..             +.++.+...+...             ..+
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~   75 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI-------------GSR   75 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH-------------TCC
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc-------------CCe
Confidence            45688999999987654   333445669999999853             2333333333322             247


Q ss_pred             eEEEEeeeCCCCCccc-------cCCCccEEEEecC
Q 027659          125 IQAVELDWGNEDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       125 v~~~~ldw~~~~~~~~-------~~~~fD~V~~~d~  153 (220)
                      +.+...|..+.+....       .-++.|+++.+--
T Consensus        76 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg  111 (278)
T 3sx2_A           76 IVARQADVRDRESLSAALQAGLDELGRLDIVVANAG  111 (278)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            8888888776543221       1247899998765

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=87.57  E-value=1  Score=35.39  Aligned_cols=81  Identities=19%  Similarity=0.190  Sum_probs=49.0

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+.++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+.....           ..++.+...|..+.+.
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----------~~~~~~~~~D~~~~~~   78 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP-----------DAEVLTTVADVSDEAQ   78 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT-----------TCCEEEEECCTTSHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-----------CceEEEEEccCCCHHH
Confidence            3578899999986554   22334456999999997 4444444444433210           2367777777766543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-++.|+++.+--
T Consensus        79 v~~~~~~~~~~~g~id~lv~nAg  101 (267)
T 1iy8_A           79 VEAYVTATTERFGRIDGFFNNAG  101 (267)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1246899998754

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=87.56  E-value=2.4  Score=33.94  Aligned_cols=79  Identities=18%  Similarity=0.148  Sum_probs=48.3

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecch-h--hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E--VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~-~--~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|.. +  ..+.+...++..             ..++.+...|..+.
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~  112 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC-------------GRKAVLLPGDLSDE  112 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT-------------TCCEEECCCCTTSH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc-------------CCcEEEEEecCCCH
Confidence            4578999999987654   233444569999999863 2  333343333332             24677777777665


Q ss_pred             CCcc-------ccCCCccEEEEecC
Q 027659          136 DHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d~  153 (220)
                      +...       ...++.|+++.+.-
T Consensus       113 ~~v~~~~~~~~~~~g~iD~lv~nAg  137 (294)
T 3r3s_A          113 SFARSLVHKAREALGGLDILALVAG  137 (294)
T ss_dssp             HHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCC
Confidence            4321       11247899988765

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=87.55  E-value=0.92  Score=37.23  Aligned_cols=34  Identities=26%  Similarity=0.385  Sum_probs=23.7

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCC-eEEEecch
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGC-NVITTDQI   95 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~-~v~~~D~~   95 (220)
                      ...+++++|=+|+| |.   +...++..|+ +|+.++..
T Consensus       150 ~~l~gk~~lVlGaG-G~g~aia~~L~~~Ga~~V~i~nR~  187 (315)
T 3tnl_A          150 HDIIGKKMTICGAG-GAATAICIQAALDGVKEISIFNRK  187 (315)
T ss_dssp             CCCTTSEEEEECCS-HHHHHHHHHHHHTTCSEEEEEECS
T ss_pred             CCccCCEEEEECCC-hHHHHHHHHHHHCCCCEEEEEECC
Confidence            34688999999998 43   2334456788 78888763

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=87.54  E-value=6.2  Score=33.77  Aligned_cols=40  Identities=23%  Similarity=0.433  Sum_probs=27.9

Q ss_pred             CCCcEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHHH
Q 027659           64 KGKRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKR  103 (220)
Q Consensus        64 ~~~~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~~  103 (220)
                      .|.+.-=+|+|. |+ .+..+|+.|.+|++.|. ++.++.+++
T Consensus        10 ~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~   52 (431)
T 3ojo_A           10 HGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQN   52 (431)
T ss_dssp             --CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHT
T ss_pred             cCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHC
Confidence            466777888887 65 45566778999999998 556665543

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=87.49  E-value=1.1  Score=35.70  Aligned_cols=80  Identities=11%  Similarity=0.071  Sum_probs=48.3

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-C
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~-~  136 (220)
                      ..++++||=-|++.|+   ++..+++.|++|++++. .+.++.+...+....            ..++.+..+|..+. .
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~~~   76 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN------------HENVVFHQLDVTDPIA   76 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------------CCSEEEEECCTTSCHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------------CCceEEEEccCCCcHH
Confidence            3467889988987653   23334456999999997 444444433333221            24788888888776 3


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ...++.|++|.+--
T Consensus        77 ~v~~~~~~~~~~~g~iD~lv~nAg  100 (311)
T 3o26_A           77 TMSSLADFIKTHFGKLDILVNNAG  100 (311)
T ss_dssp             HHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEECCc
Confidence            211       11247999998765

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=87.34  E-value=1.6  Score=34.29  Aligned_cols=79  Identities=22%  Similarity=0.170  Sum_probs=48.3

Q ss_pred             CCCCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-h---hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee
Q 027659           61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-I---EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW  132 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~---~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw  132 (220)
                      ..++++++|=-|++.|+ |..+    ++.|++|++++. .   +.++.+...+...             ..++.+...|.
T Consensus         7 ~~l~~k~vlVTGas~GI-G~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv   72 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNL-GALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ-------------GAKVALYQSDL   72 (262)
T ss_dssp             SCCTTCEEEEETCSSHH-HHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT-------------TCEEEEEECCC
T ss_pred             cCCCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc-------------CCcEEEEECCC
Confidence            35688999999987664 4433    345889998764 2   2333333333322             24678888887


Q ss_pred             CCCCCccc-------cCCCccEEEEecC
Q 027659          133 GNEDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       133 ~~~~~~~~-------~~~~fD~V~~~d~  153 (220)
                      .+.+....       .-++.|+++.+.-
T Consensus        73 ~d~~~v~~~~~~~~~~~g~iD~lvnnAg  100 (262)
T 3ksu_A           73 SNEEEVAKLFDFAEKEFGKVDIAINTVG  100 (262)
T ss_dssp             CSHHHHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            76543211       1247899988765

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=87.29  E-value=1  Score=34.81  Aligned_cols=82  Identities=17%  Similarity=0.232  Sum_probs=49.3

Q ss_pred             CCCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee--C
Q 027659           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW--G  133 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw--~  133 (220)
                      +..++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...+            ..++.+...|.  .
T Consensus         9 ~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~d~d~~   76 (247)
T 3i1j_A            9 PELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAG------------QPQPLIIALNLENA   76 (247)
T ss_dssp             TTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------------SCCCEEEECCTTTC
T ss_pred             CccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC------------CCCceEEEeccccC
Confidence            456789999999987554   22334456999999997 445555555554432            23556666655  3


Q ss_pred             CCCCcc-------ccCCCccEEEEecC
Q 027659          134 NEDHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       134 ~~~~~~-------~~~~~fD~V~~~d~  153 (220)
                      +.....       ...++.|+++.+.-
T Consensus        77 ~~~~~~~~~~~~~~~~g~id~lv~nAg  103 (247)
T 3i1j_A           77 TAQQYRELAARVEHEFGRLDGLLHNAS  103 (247)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            222111       11247899998765

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=87.29  E-value=0.93  Score=36.00  Aligned_cols=77  Identities=16%  Similarity=0.145  Sum_probs=48.0

Q ss_pred             CCCCcEEEeCCcccHHHHH----HHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ++++++|=.|++.|+ |..    +++.|++|+++|. ++.++.+...+...             ..++.+...|..+.+.
T Consensus        20 l~~k~vlVTGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~~~~~   85 (277)
T 2rhc_B           20 QDSEVALVTGATSGI-GLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA-------------GVEADGRTCDVRSVPE   85 (277)
T ss_dssp             TTSCEEEEETCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHHH
T ss_pred             CCCCEEEEECCCCHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEECCCCCHHH
Confidence            577899999987554 333    3456999999997 44444444444322             2357777877766543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-+..|+++.+--
T Consensus        86 v~~~~~~~~~~~g~iD~lv~~Ag  108 (277)
T 2rhc_B           86 IEALVAAVVERYGPVDVLVNNAG  108 (277)
T ss_dssp             HHHHHHHHHHHTCSCSEEEECCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCC
Confidence            21       11247899988764

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=87.04  E-value=0.48  Score=37.90  Aligned_cols=79  Identities=27%  Similarity=0.275  Sum_probs=49.5

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...             ..++.+...|..+...
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~   71 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG-------------GGEAAALAGDVGDEAL   71 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT-------------TCCEEECCCCTTCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHHH
Confidence            3578899999987654   33344566999999997 44554444433221             3467777777766543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-++.|+++.+.-
T Consensus        72 v~~~~~~~~~~~g~iD~lvnnAg   94 (280)
T 3tox_A           72 HEALVELAVRRFGGLDTAFNNAG   94 (280)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1247899998765

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=87.02  E-value=1  Score=35.30  Aligned_cols=79  Identities=14%  Similarity=0.188  Sum_probs=47.6

Q ss_pred             CCCCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ....++++|=.|++.|+ |..+    ++.|++|+++|. ++.++.+...+...             ..++.+...|..+.
T Consensus        10 ~~l~~k~vlVTGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~   75 (260)
T 2zat_A           10 KPLENKVALVTASTDGI-GLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE-------------GLSVTGTVCHVGKA   75 (260)
T ss_dssp             CTTTTCEEEESSCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCH
T ss_pred             cCCCCCEEEEECCCcHH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEccCCCH
Confidence            34578889988876543 4443    456999999997 44444443333322             23577777777665


Q ss_pred             CCccc-------cCCCccEEEEecC
Q 027659          136 DHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~~-------~~~~fD~V~~~d~  153 (220)
                      +....       ..+..|+++.+--
T Consensus        76 ~~~~~~~~~~~~~~g~iD~lv~~Ag  100 (260)
T 2zat_A           76 EDRERLVAMAVNLHGGVDILVSNAA  100 (260)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCC
Confidence            43211       1247899987754

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=87.00  E-value=1  Score=35.40  Aligned_cols=79  Identities=19%  Similarity=0.199  Sum_probs=48.1

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...             ..++.+...|..+.+.
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~   70 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK-------------GVEARSYVCDVTSEEA   70 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-------------TSCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHH
Confidence            3578899999987654   22233456999999997 44444444433322             2367777877766543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-+..|+++.+--
T Consensus        71 ~~~~~~~~~~~~g~id~lv~nAg   93 (262)
T 1zem_A           71 VIGTVDSVVRDFGKIDFLFNNAG   93 (262)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCC
Confidence            21       11247899998754

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=86.92  E-value=0.92  Score=35.78  Aligned_cols=81  Identities=22%  Similarity=0.287  Sum_probs=49.1

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+.....           ...+.+...|..+...
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~D~~~~~~   75 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYP-----------DAILQPVVADLGTEQG   75 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCT-----------TCEEEEEECCTTSHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-----------CceEEEEecCCCCHHH
Confidence            4578899999987654   23334456999999997 4455444444443321           2356667767665432


Q ss_pred             cc---ccCCCccEEEEecC
Q 027659          138 IK---AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~---~~~~~fD~V~~~d~  153 (220)
                      ..   ..-++.|+++.+--
T Consensus        76 ~~~~~~~~g~id~lv~nAg   94 (267)
T 3t4x_A           76 CQDVIEKYPKVDILINNLG   94 (267)
T ss_dssp             HHHHHHHCCCCSEEEECCC
T ss_pred             HHHHHHhcCCCCEEEECCC
Confidence            21   11347899988765

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=86.73  E-value=1.2  Score=34.85  Aligned_cols=78  Identities=24%  Similarity=0.350  Sum_probs=49.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..+++++|=.|++.| +|..+    ++.|++|+++|. .+.++.+...+...             ..++.+...|..+.+
T Consensus        26 ~l~~k~vlITGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~   91 (262)
T 3rkr_A           26 SLSGQVAVVTGASRG-IGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA-------------GGEAESHACDLSHSD   91 (262)
T ss_dssp             TTTTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCEEEEEECCTTCHH
T ss_pred             ccCCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh-------------CCceeEEEecCCCHH
Confidence            457889999997654 34443    456999999997 44555555544433             246788887776654


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ...++.|+++.+.-
T Consensus        92 ~v~~~~~~~~~~~g~id~lv~~Ag  115 (262)
T 3rkr_A           92 AIAAFATGVLAAHGRCDVLVNNAG  115 (262)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCC
Confidence            321       11246899987754

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=86.72  E-value=0.61  Score=38.24  Aligned_cols=95  Identities=23%  Similarity=0.254  Sum_probs=55.3

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ....|.+||=.|+|. |..++.+|+ .|++ ++++|. ++-++.+++    .+.             . .+  .+..+..
T Consensus       157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa-------------~-~~--i~~~~~~  216 (346)
T 4a2c_A          157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGA-------------M-QT--FNSSEMS  216 (346)
T ss_dssp             TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC-------------S-EE--EETTTSC
T ss_pred             ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCC-------------e-EE--EeCCCCC
Confidence            345788999999986 777777775 5775 678887 444454432    221             1 11  1112211


Q ss_pred             C---c--cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 H---I--KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 ~---~--~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .   .  ......+|+|+-+--     ....++...++++++|.+.+..
T Consensus       217 ~~~~~~~~~~~~g~d~v~d~~G-----~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          217 APQMQSVLRELRFNQLILETAG-----VPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             HHHHHHHHGGGCSSEEEEECSC-----SHHHHHHHHHHCCTTCEEEECC
T ss_pred             HHHHHHhhcccCCccccccccc-----ccchhhhhhheecCCeEEEEEe
Confidence            0   0  012346787764321     3455677778899999887654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=86.68  E-value=1.3  Score=29.61  Aligned_cols=69  Identities=20%  Similarity=0.259  Sum_probs=40.8

Q ss_pred             CCCcEEEeCCcccHHHHHHH----HhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMA----LLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la----~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+++|+=+|+|  ..|..++    ..| .+|+++|. ++.++.+.    .               ..+.+...|..+...
T Consensus         4 ~~~~v~I~G~G--~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~---------------~~~~~~~~d~~~~~~   62 (118)
T 3ic5_A            4 MRWNICVVGAG--KIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R---------------MGVATKQVDAKDEAG   62 (118)
T ss_dssp             TCEEEEEECCS--HHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T---------------TTCEEEECCTTCHHH
T ss_pred             CcCeEEEECCC--HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h---------------CCCcEEEecCCCHHH
Confidence            35689999994  4555444    447 67999997 44333332    1               134556655554333


Q ss_pred             ccccCCCccEEEEecC
Q 027659          138 IKAVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~  153 (220)
                      ....-..+|+|+.+-.
T Consensus        63 ~~~~~~~~d~vi~~~~   78 (118)
T 3ic5_A           63 LAKALGGFDAVISAAP   78 (118)
T ss_dssp             HHHHTTTCSEEEECSC
T ss_pred             HHHHHcCCCEEEECCC
Confidence            2222357899998765

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=86.64  E-value=1.1  Score=37.29  Aligned_cols=94  Identities=18%  Similarity=0.193  Sum_probs=56.8

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-  136 (220)
                      ...|.+||-+|||. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+.             . .+  ++..+.. 
T Consensus       188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-------------~-~v--i~~~~~~~  247 (371)
T 1f8f_A          188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGA-------------T-HV--INSKTQDP  247 (371)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTC-------------S-EE--EETTTSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC-------------C-EE--ecCCccCH
Confidence            44788999999987 888888876 588 6999997 455555543    221             1 11  1111111 


Q ss_pred             --Ccc-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 --HIK-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 --~~~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                        ... ...+.+|+|+-+--     ....+....++|+++|++++..
T Consensus       248 ~~~~~~~~~gg~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          248 VAAIKEITDGGVNFALESTG-----SPEILKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             HHHHHHHTTSCEEEEEECSC-----CHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHhcCCCCcEEEECCC-----CHHHHHHHHHHHhcCCEEEEeC
Confidence              010 11236898884422     2355677778889998877653

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=86.63  E-value=0.36  Score=39.70  Aligned_cols=43  Identities=14%  Similarity=0.077  Sum_probs=32.9

Q ss_pred             CCCccEEEEecCCCCC------------ChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          142 APPFDYIIGTDVYAEH------------LLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~------------~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      .++||+|+..++|+..            .....+..+.++|+|+|.+++....+.
T Consensus        56 ~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~~  110 (319)
T 1eg2_A           56 DDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQY  110 (319)
T ss_dssp             TTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCC
T ss_pred             cCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCccc
Confidence            4689999999996543            245666777889999999999876553

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=86.63  E-value=0.83  Score=36.36  Aligned_cols=78  Identities=24%  Similarity=0.255  Sum_probs=47.5

Q ss_pred             CCCCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ...++++||=.|++.| +|..+    ++.|++|+++|. ++.++.+...+...+            ..++.+...|..+.
T Consensus        24 ~~~~~k~vlITGasgg-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dl~d~   90 (286)
T 1xu9_A           24 EMLQGKKVIVTGASKG-IGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG------------AASAHYIAGTMEDM   90 (286)
T ss_dssp             GGGTTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------------CSEEEEEECCTTCH
T ss_pred             hhcCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC------------CCceEEEeCCCCCH
Confidence            3457889999987654 44443    455899999997 445554444333322            13577778777664


Q ss_pred             CCccc-------cCCCccEEEEe
Q 027659          136 DHIKA-------VAPPFDYIIGT  151 (220)
Q Consensus       136 ~~~~~-------~~~~fD~V~~~  151 (220)
                      +....       ..+..|+++.+
T Consensus        91 ~~v~~~~~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           91 TFAEQFVAQAGKLMGGLDMLILN  113 (286)
T ss_dssp             HHHHHHHHHHHHHHTSCSEEEEC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEC
Confidence            32211       12478999977

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=86.59  E-value=1.1  Score=34.78  Aligned_cols=77  Identities=23%  Similarity=0.266  Sum_probs=46.9

Q ss_pred             CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+++++|=.|++ |.+|..++    +.|++|+++|. ++.++.+...+...             ..++.+...|..+.+.
T Consensus         9 ~~~~~vlVtGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~   74 (255)
T 1fmc_A            9 LDGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-------------GGQAFACRCDITSEQE   74 (255)
T ss_dssp             CTTCEEEETTTT-SHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHHH
T ss_pred             CCCCEEEEECCc-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh-------------CCceEEEEcCCCCHHH
Confidence            577889988865 44555544    45889999997 44444444444322             2367777777766443


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       ..+.+|+|+.+.-
T Consensus        75 ~~~~~~~~~~~~~~~d~vi~~Ag   97 (255)
T 1fmc_A           75 LSALADFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCC
Confidence            211       1137899988765

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=86.58  E-value=1.2  Score=35.17  Aligned_cols=81  Identities=19%  Similarity=0.261  Sum_probs=48.5

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..++++++|=.|++.|+   ++..+++.|++|++++. ++.++.+...+....            ..++.+...|..+.+
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~~   84 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY------------GVETMAFRCDVSNYE   84 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCeEEEEEcCCCCHH
Confidence            45678899999986554   22334456999999987 444444443331111            235677777776654


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       .-+..|+++.+--
T Consensus        85 ~v~~~~~~~~~~~g~iD~lvnnAg  108 (267)
T 1vl8_A           85 EVKKLLEAVKEKFGKLDTVVNAAG  108 (267)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            3211       1247899988754

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=86.49  E-value=0.82  Score=36.39  Aligned_cols=79  Identities=10%  Similarity=0.119  Sum_probs=47.7

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...             ..++.+...|..+.+.
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d~~~   87 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA-------------GHDVDGSSCDVTSTDE   87 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT-------------TCCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHHH
Confidence            4467889999987654   23344566999999997 44454444444332             2467888877776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+.-
T Consensus        88 v~~~~~~~~~~~g~id~lv~nAg  110 (279)
T 3sju_A           88 VHAAVAAAVERFGPIGILVNSAG  110 (279)
T ss_dssp             HHHHHHHHHHHHCSCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCcEEEECCC
Confidence            21       11247899998765

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=86.47  E-value=1.1  Score=36.94  Aligned_cols=94  Identities=20%  Similarity=0.194  Sum_probs=56.5

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC--C
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--E  135 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~--~  135 (220)
                      ...|.+||-+|+|. |+.++.+|+ .|+ +|+++|. ++-++.+++    .+.             . .+  ++...  .
T Consensus       169 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-------------~-~v--i~~~~~~~  228 (356)
T 1pl8_A          169 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGA-------------D-LV--LQISKESP  228 (356)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC-------------S-EE--EECSSCCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC-------------C-EE--EcCccccc
Confidence            44688999999986 888887776 588 7999997 444555432    221             1 11  12110  0


Q ss_pred             CC----cc-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          136 DH----IK-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       136 ~~----~~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ..    .. .....+|+|+-+--     ....+....++|+++|++++..
T Consensus       229 ~~~~~~i~~~~~~g~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          229 QEIARKVEGQLGCKPEVTIECTG-----AEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             HHHHHHHHHHHTSCCSEEEECSC-----CHHHHHHHHHHSCTTCEEEECS
T ss_pred             chHHHHHHHHhCCCCCEEEECCC-----ChHHHHHHHHHhcCCCEEEEEe
Confidence            00    00 01256999985422     2345666777899999887653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=86.42  E-value=1.2  Score=35.29  Aligned_cols=79  Identities=18%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecch-------------hhHHHHHHHHHHhhhhhccCCCCCCCCCce
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGSI  125 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v  125 (220)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|..             +.++.+...+...             ..++
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~   73 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT-------------GRKA   73 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT-------------TSCE
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc-------------CCce
Confidence            4678999999987654   233445669999999853             2233333333222             2467


Q ss_pred             EEEEeeeCCCCCccc-------cCCCccEEEEecC
Q 027659          126 QAVELDWGNEDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       126 ~~~~ldw~~~~~~~~-------~~~~fD~V~~~d~  153 (220)
                      .+...|..+......       .-++.|+++.+--
T Consensus        74 ~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (287)
T 3pxx_A           74 YTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAG  108 (287)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888888776543211       1247899998765

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=86.27  E-value=1.2  Score=34.98  Aligned_cols=78  Identities=17%  Similarity=0.270  Sum_probs=47.4

Q ss_pred             CCCCcEEEeCCcccHHHHH----HHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ++++++|=.|++.|+ |..    +++.|++|+++|. ++.++.+...+....            ..++.+...|..+.+.
T Consensus         5 l~~k~vlVTGas~gI-G~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~D~~~~~~   71 (263)
T 3ai3_A            5 ISGKVAVITGSSSGI-GLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKF------------GVRVLEVAVDVATPEG   71 (263)
T ss_dssp             CTTCEEEEESCSSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTSHHH
T ss_pred             CCCCEEEEECCCchH-HHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhc------------CCceEEEEcCCCCHHH
Confidence            467889999986553 333    3456999999997 444444443333220            1357777877776543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-+..|+++.+--
T Consensus        72 ~~~~~~~~~~~~g~id~lv~~Ag   94 (263)
T 3ai3_A           72 VDAVVESVRSSFGGADILVNNAG   94 (263)
T ss_dssp             HHHHHHHHHHHHSSCSEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1137899988764

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=86.26  E-value=1.1  Score=37.37  Aligned_cols=41  Identities=27%  Similarity=0.324  Sum_probs=31.6

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHH
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK  102 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~  102 (220)
                      ...|.+||-+|+|. |+..+.+|+ .|++|+++|. ++-++.++
T Consensus       192 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~  235 (369)
T 1uuf_A          192 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK  235 (369)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            34688999999986 777777775 5889999997 55666654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=86.06  E-value=1  Score=37.75  Aligned_cols=97  Identities=23%  Similarity=0.217  Sum_probs=58.2

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ...|.+||-+|||. |+.++.+|+ .|+ +|+++|. ++-++.+++    .+.               ..  .+..+...
T Consensus       183 ~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa---------------~~--i~~~~~~~  241 (398)
T 1kol_A          183 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF---------------EI--ADLSLDTP  241 (398)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---------------EE--EETTSSSC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC---------------cE--EccCCcch
Confidence            44788999999987 888888886 588 6999997 455555532    221               21  22222111


Q ss_pred             ----ccc--cCCCccEEEEecCCC----------CCChHHHHHHHHHhhCCCcEEEEE
Q 027659          138 ----IKA--VAPPFDYIIGTDVYA----------EHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       138 ----~~~--~~~~fD~V~~~d~y~----------~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                          ...  ....+|+|+-+--..          .......+....++++++|++++.
T Consensus       242 ~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          242 LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             HHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence                110  124699998543311          111234567777888999988764

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=86.04  E-value=1.3  Score=34.41  Aligned_cols=77  Identities=16%  Similarity=0.211  Sum_probs=47.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++||=.|++.| +|..++    +.|++|+++|. ++.++.+.+.+...             ..++.+...|..+...
T Consensus        11 l~~k~vlItGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~D~~~~~~   76 (260)
T 3awd_A           11 LDNRVAIVTGGAQN-IGLACVTALAEAGARVIIADLDEAMATKAVEDLRME-------------GHDVSSVVMDVTNTES   76 (260)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHHH
T ss_pred             CCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCceEEEEecCCCHHH
Confidence            46788999987644 444443    45899999997 44444343333322             2367888877766543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       ..++.|+|+.+.-
T Consensus        77 ~~~~~~~~~~~~~~id~vi~~Ag   99 (260)
T 3awd_A           77 VQNAVRSVHEQEGRVDILVACAG   99 (260)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1146899988754

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=86.01  E-value=3.4  Score=32.79  Aligned_cols=80  Identities=11%  Similarity=0.122  Sum_probs=47.2

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-h-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC--
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN--  134 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~--  134 (220)
                      .++++++|=.|++.|+   ++..+++.|++|+++|. + +.++.+...+....            ..++.+...|..+  
T Consensus        20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~~~~   87 (288)
T 2x9g_A           20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER------------SNTAVVCQADLTNSN   87 (288)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS------------TTCEEEEECCCSCST
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc------------CCceEEEEeecCCcc
Confidence            3578889998887654   22334456999999986 4 54444443332111            2467888888877  


Q ss_pred             --CCCcc-------ccCCCccEEEEecC
Q 027659          135 --EDHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       135 --~~~~~-------~~~~~fD~V~~~d~  153 (220)
                        .....       ...++.|++|.+--
T Consensus        88 ~~~~~v~~~~~~~~~~~g~iD~lvnnAG  115 (288)
T 2x9g_A           88 VLPASCEEIINSCFRAFGRCDVLVNNAS  115 (288)
T ss_dssp             THHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence              32211       01247899998764

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=85.97  E-value=1.9  Score=33.71  Aligned_cols=76  Identities=20%  Similarity=0.336  Sum_probs=46.8

Q ss_pred             CCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+++++|=-|++.| +|..+    ++.|++|+++|. ++.++.+...+...             ..++.+...|..+...
T Consensus         3 l~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~   68 (260)
T 2qq5_A            3 MNGQVCVVTGASRG-IGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL-------------GGQCVPVVCDSSQESE   68 (260)
T ss_dssp             TTTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH-------------SSEEEEEECCTTSHHH
T ss_pred             CCCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc-------------CCceEEEECCCCCHHH
Confidence            36788888887654 34443    456999999987 44444444433322             2357777877776543


Q ss_pred             cc----c----cCCCccEEEEec
Q 027659          138 IK----A----VAPPFDYIIGTD  152 (220)
Q Consensus       138 ~~----~----~~~~fD~V~~~d  152 (220)
                      ..    .    ..++.|+++.+-
T Consensus        69 v~~~~~~~~~~~~g~id~lvnnA   91 (260)
T 2qq5_A           69 VRSLFEQVDREQQGRLDVLVNNA   91 (260)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEECC
T ss_pred             HHHHHHHHHHhcCCCceEEEECC
Confidence            21    0    135789999876

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=85.66  E-value=6.8  Score=31.66  Aligned_cols=101  Identities=16%  Similarity=0.097  Sum_probs=55.6

Q ss_pred             CcEEEeCCcc--cHHHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           66 KRVIELGAGC--GVAGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      ++|+=+|+|.  +.++..+++.|.+|++.+.++ .+    .+..+++.+...     ......+.......  .......
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~----~i~~~Gl~~~~~-----~~g~~~~~~~~~~~--~~~~~~~   70 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-YE----TVKAKGIRIRSA-----TLGDYTFRPAAVVR--SAAELET   70 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-HH----HHHHHCEEEEET-----TTCCEEECCSCEES--CGGGCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-HH----HHHhCCcEEeec-----CCCcEEEeeeeeEC--CHHHcCC
Confidence            4788899996  556666777788999999754 23    233333311100     01122211110001  1111234


Q ss_pred             CccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          144 PFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       144 ~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      .+|+|+.+-. +...   .+++.+..+++++..++....
T Consensus        71 ~~DlVilavK~~~~~---~~l~~l~~~l~~~t~Iv~~~n  106 (320)
T 3i83_A           71 KPDCTLLCIKVVEGA---DRVGLLRDAVAPDTGIVLISN  106 (320)
T ss_dssp             CCSEEEECCCCCTTC---CHHHHHTTSCCTTCEEEEECS
T ss_pred             CCCEEEEecCCCChH---HHHHHHHhhcCCCCEEEEeCC
Confidence            7999998877 6533   566777777888776655443

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=85.57  E-value=1.3  Score=35.18  Aligned_cols=80  Identities=21%  Similarity=0.208  Sum_probs=49.7

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc--------------hhhHHHHHHHHHHhhhhhccCCCCCCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--------------IEVLPLLKRNVEWNTSRISQMNPGSDLLG  123 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~--------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~  123 (220)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|.              .+.++.+.+.+...             ..
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~   77 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ-------------GR   77 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT-------------TC
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-------------CC
Confidence            45688999999987764   33344566999999885              22333333333322             34


Q ss_pred             ceEEEEeeeCCCCCccc-------cCCCccEEEEecC
Q 027659          124 SIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       124 ~v~~~~ldw~~~~~~~~-------~~~~fD~V~~~d~  153 (220)
                      ++.+...|..+.+....       .-++.|+++.+.-
T Consensus        78 ~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  114 (280)
T 3pgx_A           78 KALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAG  114 (280)
T ss_dssp             CEEEEECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             eEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            67888878776543211       1247899998765

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=85.52  E-value=1.3  Score=34.63  Aligned_cols=81  Identities=15%  Similarity=0.156  Sum_probs=51.1

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+.....          ...++.+...|..+.+..
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v   74 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNK----------HVQEPIVLPLDITDCTKA   74 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCT----------TSCCCEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcc----------ccCcceEEeccCCCHHHH
Confidence            467889999987654   33344566999999997 4555555555443311          024677888777765432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ...++.|+++.+.-
T Consensus        75 ~~~~~~~~~~~g~iD~lvnnAg   96 (250)
T 3nyw_A           75 DTEIKDIHQKYGAVDILVNAAA   96 (250)
T ss_dssp             HHHHHHHHHHHCCEEEEEECCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCC
Confidence            1       11247899988765

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=85.45  E-value=1.3  Score=35.10  Aligned_cols=80  Identities=25%  Similarity=0.269  Sum_probs=49.2

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecch-----------------hhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-----------------EVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~-----------------~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|..                 +.++.+...+...            
T Consensus         7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------   74 (286)
T 3uve_A            7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH------------   74 (286)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT------------
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc------------
Confidence            34678999999998764   334445669999998853                 2222222222211            


Q ss_pred             CCCceEEEEeeeCCCCCccc-------cCCCccEEEEecC
Q 027659          121 LLGSIQAVELDWGNEDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~-------~~~~fD~V~~~d~  153 (220)
                       ..++.+...|..+.+....       .-++.|+++.+.-
T Consensus        75 -~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  113 (286)
T 3uve_A           75 -NRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAG  113 (286)
T ss_dssp             -TCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             -CCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCc
Confidence             3467888888776543211       1247899998765

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=85.37  E-value=1.5  Score=36.33  Aligned_cols=93  Identities=12%  Similarity=0.078  Sum_probs=56.6

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-C
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~-~  136 (220)
                      ...|.+||=+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+.             . .+  .+..+. .
T Consensus       189 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-------------~-~v--i~~~~~~~  248 (373)
T 1p0f_A          189 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGA-------------T-EC--LNPKDYDK  248 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTC-------------S-EE--ECGGGCSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC-------------c-EE--Eecccccc
Confidence            44788999999986 888887775 588 7999997 555565542    221             1 11  111110 1


Q ss_pred             Cc----c-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCC-cEEEEE
Q 027659          137 HI----K-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPK-TTILLG  179 (220)
Q Consensus       137 ~~----~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~-g~~~i~  179 (220)
                      ..    . ...+.+|+|+-+--     ....+....++++++ |++++.
T Consensus       249 ~~~~~i~~~t~gg~Dvvid~~g-----~~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          249 PIYEVICEKTNGGVDYAVECAG-----RIETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             hHHHHHHHHhCCCCCEEEECCC-----CHHHHHHHHHHHhcCCCEEEEE
Confidence            10    0 11237999984321     245567777889999 987754

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=85.37  E-value=2.7  Score=34.73  Aligned_cols=93  Identities=20%  Similarity=0.151  Sum_probs=56.1

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ....|.+||=+|+|. |+.++.+|+ .|++|+++|. ++-++.+++    .+.             . .+  ++ .+...
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa-------------~-~v--i~-~~~~~  244 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFA----LGA-------------D-HG--IN-RLEED  244 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----HTC-------------S-EE--EE-TTTSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHH----cCC-------------C-EE--Ec-CCccc
Confidence            345788999999886 888887775 5899999997 455554432    221             1 11  12 12111


Q ss_pred             c----c--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          138 I----K--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       138 ~----~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .    .  .....+|+|+-+--  ..    .+....++++++|++++..
T Consensus       245 ~~~~v~~~~~g~g~D~vid~~g--~~----~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          245 WVERVYALTGDRGADHILEIAG--GA----GLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             HHHHHHHHHTTCCEEEEEEETT--SS----CHHHHHHHEEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCCceEEEECCC--hH----HHHHHHHHhhcCCEEEEEe
Confidence            1    0  11347999986533  22    2455566788999887653

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=85.36  E-value=0.96  Score=36.14  Aligned_cols=78  Identities=17%  Similarity=0.182  Sum_probs=48.3

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++++|=-|++.|+   ++..+++.|++|+++|. .+.++.+...+...             ..++.+...|..+....
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~-------------~~~~~~~~~Dv~d~~~v   92 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA-------------GGQAIALEADVSDELQM   92 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT-------------TCCEEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHH
Confidence            467889999987654   23344456999999997 44444444433221             34678888777765432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ..-++.|+++.+.-
T Consensus        93 ~~~~~~~~~~~g~iD~lVnnAg  114 (283)
T 3v8b_A           93 RNAVRDLVLKFGHLDIVVANAG  114 (283)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCC
Confidence            1       11247899988754

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=85.29  E-value=1.5  Score=35.13  Aligned_cols=80  Identities=25%  Similarity=0.272  Sum_probs=49.4

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecch-------------hhHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (220)
                      ..++|+++|=-|++.|+   ++..+++.|++|+++|..             +.++.+...+...             ..+
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~   90 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL-------------GRR   90 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT-------------TCC
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc-------------CCc
Confidence            34678999999987764   333445669999998853             2233333333222             347


Q ss_pred             eEEEEeeeCCCCCccc-------cCCCccEEEEecC
Q 027659          125 IQAVELDWGNEDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       125 v~~~~ldw~~~~~~~~-------~~~~fD~V~~~d~  153 (220)
                      +.+...|..+......       .-+..|+++.+.-
T Consensus        91 ~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg  126 (299)
T 3t7c_A           91 IIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAA  126 (299)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             eEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            8888888776543211       1247899988764

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=85.25  E-value=1.5  Score=34.67  Aligned_cols=79  Identities=16%  Similarity=0.189  Sum_probs=48.2

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecch-------------hhHHHHHHHHHHhhhhhccCCCCCCCCCce
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGSI  125 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v  125 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|..             +.++.+...+...             ..++
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~   73 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT-------------GRRC   73 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT-------------TCCE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc-------------CCeE
Confidence            4678999999987654   233444569999999863             2222222222222             3467


Q ss_pred             EEEEeeeCCCCCccc-------cCCCccEEEEecC
Q 027659          126 QAVELDWGNEDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       126 ~~~~ldw~~~~~~~~-------~~~~fD~V~~~d~  153 (220)
                      .+...|..+.+....       .-++.|+++.+--
T Consensus        74 ~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (281)
T 3s55_A           74 ISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAG  108 (281)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            888888776543211       1247899988765

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=85.24  E-value=2.4  Score=34.92  Aligned_cols=42  Identities=19%  Similarity=0.168  Sum_probs=32.1

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHH
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKR  103 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~  103 (220)
                      ...|.+||-+|+|. |+..+.+|+ .|++|+++|. ++-++.+++
T Consensus       177 ~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          177 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            44788999999976 777777775 6999999997 555666543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=85.17  E-value=1.2  Score=35.61  Aligned_cols=80  Identities=23%  Similarity=0.309  Sum_probs=47.6

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+            ...+.+...|..+.+.
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~d~~~   97 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRT------------GNIVRAVVCDVGDPDQ   97 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------------CCeEEEEEcCCCCHHH
Confidence            4578899999987654   23334456999999997 455555554444332            1245778877776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+.-
T Consensus        98 v~~~~~~~~~~~g~iD~lvnnAG  120 (281)
T 4dry_A           98 VAALFAAVRAEFARLDLLVNNAG  120 (281)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11247899998765

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=85.03  E-value=2.4  Score=34.82  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=31.7

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHH
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK  102 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~  102 (220)
                      ....|.+||=+|+|. |+.++.+|+ .|+ +|+++|. ++-++.++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~  208 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIAL  208 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence            345788999999987 888888886 488 6999997 44555554

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=84.88  E-value=3.6  Score=32.76  Aligned_cols=104  Identities=22%  Similarity=0.256  Sum_probs=53.0

Q ss_pred             CcEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCC-CCCC-----CCCceEEEEeeeCCCC
Q 027659           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN-PGSD-----LLGSIQAVELDWGNED  136 (220)
Q Consensus        66 ~~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~-~~~~-----~~~~v~~~~ldw~~~~  136 (220)
                      ++|.=||+|+ | .++..++..|.+|++.|. ++.++.++..+..+........ ....     ...++....    +  
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~----~--   78 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSD----D--   78 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEES----C--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeC----C--
Confidence            4677788886 3 344555667999999998 5677666655433211000000 0000     000122211    1  


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEE
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTI  176 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~  176 (220)
                       ....-...|+|+-+-+-..+....+++.+...++++..+
T Consensus        79 -~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il  117 (283)
T 4e12_A           79 -LAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIF  117 (283)
T ss_dssp             -HHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred             -HHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEE
Confidence             111124578888765532234556667777777766543

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=84.64  E-value=1.5  Score=35.69  Aligned_cols=79  Identities=24%  Similarity=0.207  Sum_probs=48.1

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecch-------------hhHHHHHHHHHHhhhhhccCCCCCCCCCce
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-------------EVLPLLKRNVEWNTSRISQMNPGSDLLGSI  125 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~-------------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v  125 (220)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|..             +.++.+...+...             ..++
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  109 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ-------------GRRI  109 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT-------------TCCE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc-------------CCeE
Confidence            4578899999987664   333445669999998752             2222222222222             3467


Q ss_pred             EEEEeeeCCCCCccc-------cCCCccEEEEecC
Q 027659          126 QAVELDWGNEDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       126 ~~~~ldw~~~~~~~~-------~~~~fD~V~~~d~  153 (220)
                      .+...|..+.+....       .-++.|++|.+--
T Consensus       110 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg  144 (317)
T 3oec_A          110 IARQADVRDLASLQAVVDEALAEFGHIDILVSNVG  144 (317)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            888888776543211       1247899998765

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=84.58  E-value=2  Score=34.29  Aligned_cols=60  Identities=17%  Similarity=0.078  Sum_probs=38.2

Q ss_pred             CCCCcEEEeCCcccHHHHH----HHHhCCeEEEec-c-hhhHHHHHHHHH-HhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTD-Q-IEVLPLLKRNVE-WNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D-~-~~~l~~~~~n~~-~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      .+++++|=.|++.|+ |..    +++.|++|+++| . ++.++.+...+. ..             ..++.+...|..+.
T Consensus         7 l~~k~~lVTGas~GI-G~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~~Dl~~~   72 (291)
T 1e7w_A            7 PTVPVALVTGAAKRL-GRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-------------PNSAITVQADLSNV   72 (291)
T ss_dssp             -CCCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-------------TTCEEEEECCCSSS
T ss_pred             CCCCEEEEECCCchH-HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhc-------------CCeeEEEEeecCCc
Confidence            467889988887654 443    345699999999 6 444544444443 21             23678888888776


Q ss_pred             C
Q 027659          136 D  136 (220)
Q Consensus       136 ~  136 (220)
                      .
T Consensus        73 ~   73 (291)
T 1e7w_A           73 A   73 (291)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=84.52  E-value=2.4  Score=34.33  Aligned_cols=75  Identities=20%  Similarity=0.149  Sum_probs=46.2

Q ss_pred             EeeeCCCCCccccCCCccEEEEecC--CCCCC------hHH----HHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh
Q 027659          129 ELDWGNEDHIKAVAPPFDYIIGTDV--YAEHL------LEP----LLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  196 (220)
Q Consensus       129 ~ldw~~~~~~~~~~~~fD~V~~~d~--y~~~~------~~~----l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~  196 (220)
                      .+|.+.+..    .+++|+|++.-.  |....      +..    +++....+|+|||.+++-.-.-.+...+.+...++
T Consensus       195 ~lDfg~p~~----~~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~La  270 (320)
T 2hwk_A          195 RLDLGIPGD----VPKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIA  270 (320)
T ss_dssp             CGGGCSCTT----SCCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHH
T ss_pred             ccccCCccc----cCcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHH
Confidence            455554432    367999998765  33222      222    33334455899999887554433335688889999


Q ss_pred             cCCeEEEeeCC
Q 027659          197 SNFNVKLVPKA  207 (220)
Q Consensus       197 ~~f~v~~v~~~  207 (220)
                      +.|+..++-+-
T Consensus       271 R~F~~Vr~vKP  281 (320)
T 2hwk_A          271 RQFKFSRVCKP  281 (320)
T ss_dssp             TTEEEEEEECC
T ss_pred             HhcceeeeeCC
Confidence            99977665433

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=84.43  E-value=1.8  Score=35.95  Aligned_cols=93  Identities=17%  Similarity=0.181  Sum_probs=56.2

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-C
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~-~  136 (220)
                      ...|.+||=+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+.             . .+  ++..+. .
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-------------~-~v--i~~~~~~~  252 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGA-------------T-DC--LNPRELDK  252 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC-------------S-EE--ECGGGCSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC-------------c-EE--Eccccccc
Confidence            44688999999986 888777775 588 7999997 555555532    221             1 11  121210 1


Q ss_pred             Cc----c-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCC-cEEEEE
Q 027659          137 HI----K-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPK-TTILLG  179 (220)
Q Consensus       137 ~~----~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~-g~~~i~  179 (220)
                      ..    . ...+.+|+|+-+--     ....+....++++++ |++++.
T Consensus       253 ~~~~~v~~~~~~g~Dvvid~~G-----~~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          253 PVQDVITELTAGGVDYSLDCAG-----TAQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             CHHHHHHHHHTSCBSEEEESSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             hHHHHHHHHhCCCccEEEECCC-----CHHHHHHHHHHhhcCCCEEEEE
Confidence            10    0 01237999984321     245667777889999 987754

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=84.36  E-value=1.9  Score=33.59  Aligned_cols=77  Identities=17%  Similarity=0.075  Sum_probs=46.1

Q ss_pred             CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++||=.|++.| +|..++    +.|++|++++. ++.++.+...+...             ..++.+...|..+...
T Consensus        12 l~~k~vlITGasgg-iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~   77 (266)
T 1xq1_A           12 LKAKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK-------------GFQVTGSVCDASLRPE   77 (266)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTSHHH
T ss_pred             CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCeeEEEECCCCCHHH
Confidence            57788998887554 444443    45899999987 44444443333322             2357777777665432


Q ss_pred             ccc--------cCCCccEEEEecC
Q 027659          138 IKA--------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~--------~~~~fD~V~~~d~  153 (220)
                      ...        ..++.|+|+.+--
T Consensus        78 ~~~~~~~~~~~~~~~id~li~~Ag  101 (266)
T 1xq1_A           78 REKLMQTVSSMFGGKLDILINNLG  101 (266)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             HHHHHHHHHHHhCCCCcEEEECCC
Confidence            211        0157899987754

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=84.22  E-value=1.5  Score=35.93  Aligned_cols=90  Identities=13%  Similarity=0.043  Sum_probs=54.8

Q ss_pred             CCCcEEEeCCcc-cHHHHHHHH-h--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC-C--
Q 027659           64 KGKRVIELGAGC-GVAGFGMAL-L--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-E--  135 (220)
Q Consensus        64 ~~~~vLELGcG~-G~~~l~la~-~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~-~--  135 (220)
                      .|.+||-+|+|. |+..+.+|+ .  |++|+++|. ++-++.+++    .+.             . .+  ++..+ .  
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa-------------~-~v--i~~~~~~~~  229 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGA-------------D-YV--SEMKDAESL  229 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTC-------------S-EE--ECHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCC-------------C-EE--eccccchHH
Confidence            788999999986 887777775 6  899999997 455555543    121             0 11  11111 0  


Q ss_pred             -CCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          136 -DHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       136 -~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                       .... ....+|+|+-+--     ....+....++++++|++++.
T Consensus       230 ~~~~~-~g~g~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          230 INKLT-DGLGASIAIDLVG-----TEETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             HHHHH-TTCCEEEEEESSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHhh-cCCCccEEEECCC-----ChHHHHHHHHHhhcCCEEEEe
Confidence             0111 1236899885422     234566677788888887654

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=84.15  E-value=1.9  Score=35.81  Aligned_cols=93  Identities=13%  Similarity=0.102  Sum_probs=56.7

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-C
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~-~  136 (220)
                      ...|.+||-+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+.             . .+  ++..+. .
T Consensus       190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa-------------~-~v--i~~~~~~~  249 (374)
T 1cdo_A          190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGA-------------T-DF--VNPNDHSE  249 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC-------------C-EE--ECGGGCSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCC-------------c-eE--Eeccccch
Confidence            44688999999876 877777775 588 7999997 555665542    221             1 11  122210 1


Q ss_pred             Cc----c-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCC-cEEEEE
Q 027659          137 HI----K-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPK-TTILLG  179 (220)
Q Consensus       137 ~~----~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~-g~~~i~  179 (220)
                      ..    . ...+.+|+|+-+--     ....+....++++++ |++++.
T Consensus       250 ~~~~~~~~~~~~g~D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          250 PISQVLSKMTNGGVDFSLECVG-----NVGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             CHHHHHHHHHTSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             hHHHHHHHHhCCCCCEEEECCC-----CHHHHHHHHHHhhcCCcEEEEE
Confidence            11    0 11237999984422     245667777889999 987754

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=83.97  E-value=1.6  Score=34.07  Aligned_cols=75  Identities=24%  Similarity=0.264  Sum_probs=45.0

Q ss_pred             CCcEEEeCCcccHHHHH----HHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           65 GKRVIELGAGCGVAGFG----MALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~----la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++++|=.|++.| +|..    +++.|++|+++|. ++.++.+.+.+...             ..++.+...|..+.+...
T Consensus         2 ~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~v~   67 (256)
T 1geg_A            2 KKVALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA-------------GGHAVAVKVDVSDRDQVF   67 (256)
T ss_dssp             CCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTSHHHHH
T ss_pred             CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------------CCcEEEEEecCCCHHHHH
Confidence            467888887654 3444    3456999999997 44444443333322             235777787777654321


Q ss_pred             c-------cCCCccEEEEecC
Q 027659          140 A-------VAPPFDYIIGTDV  153 (220)
Q Consensus       140 ~-------~~~~fD~V~~~d~  153 (220)
                      .       .-+..|+++.+--
T Consensus        68 ~~~~~~~~~~g~id~lv~nAg   88 (256)
T 1geg_A           68 AAVEQARKTLGGFDVIVNNAG   88 (256)
T ss_dssp             HHHHHHHHHTTCCCEEEECCC
T ss_pred             HHHHHHHHHhCCCCEEEECCC
Confidence            1       1247899998764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=83.96  E-value=2.7  Score=33.53  Aligned_cols=77  Identities=12%  Similarity=0.166  Sum_probs=43.8

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++++|=+|+..|+   +...+++.|++|++++. ++-.+.+.+.+....              .+.+...|+.+.+..
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~--------------~~~~~~~D~~~~~~~  182 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--------------KVNVTAAETADDASR  182 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--------------TCCCEEEECCSHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcC--------------CcEEEEecCCCHHHH
Confidence            578899999943332   23344566899999987 343333333332211              234556676654333


Q ss_pred             cccCCCccEEEEecC
Q 027659          139 KAVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~  153 (220)
                      ...-..+|+|+.+-.
T Consensus       183 ~~~~~~~DvlVn~ag  197 (287)
T 1lu9_A          183 AEAVKGAHFVFTAGA  197 (287)
T ss_dssp             HHHTTTCSEEEECCC
T ss_pred             HHHHHhCCEEEECCC
Confidence            222345899988765

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=83.92  E-value=4.3  Score=32.36  Aligned_cols=80  Identities=20%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             CCCCcEEEeCCcccHH---HHHHHHhCC---eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           63 LKGKRVIELGAGCGVA---GFGMALLGC---NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~---~l~la~~g~---~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ++++++|=-|++.|+-   +..+++.|+   +|++++. .+.++.+...+.....           ..++.+...|..+.
T Consensus        31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dv~d~   99 (287)
T 3rku_A           31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP-----------NAKVHVAQLDITQA   99 (287)
T ss_dssp             HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCT-----------TCEEEEEECCTTCG
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCC-----------CCeEEEEECCCCCH
Confidence            3678999999876542   223344576   8999987 4556655555543311           24678888888776


Q ss_pred             CCcc-------ccCCCccEEEEecC
Q 027659          136 DHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d~  153 (220)
                      +...       ..-++.|+++.+.-
T Consensus       100 ~~v~~~~~~~~~~~g~iD~lVnnAG  124 (287)
T 3rku_A          100 EKIKPFIENLPQEFKDIDILVNNAG  124 (287)
T ss_dssp             GGHHHHHHTSCGGGCSCCEEEECCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEECCC
Confidence            5421       11247899998765

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=83.92  E-value=1.5  Score=34.15  Aligned_cols=76  Identities=16%  Similarity=0.136  Sum_probs=45.0

Q ss_pred             CCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhh--HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEV--LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        65 ~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~--l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++++|=.|++.|+   ++..+++.|++|+++|. ++.  ++.+.+.+...             ..++.+...|..+.+..
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~~v   68 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA-------------DQKAVFVGLDVTDKANF   68 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT-------------TCCEEEEECCTTCHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHH
Confidence            4678888876543   22334456999999987 333  44433333321             23677888777765432


Q ss_pred             cc-------cCCCccEEEEecC
Q 027659          139 KA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~~-------~~~~fD~V~~~d~  153 (220)
                      ..       .-++.|+++.+--
T Consensus        69 ~~~~~~~~~~~g~iD~lv~nAg   90 (258)
T 3a28_C           69 DSAIDEAAEKLGGFDVLVNNAG   90 (258)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCC
Confidence            11       1247899988765

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=83.86  E-value=2.4  Score=33.93  Aligned_cols=79  Identities=14%  Similarity=0.151  Sum_probs=49.4

Q ss_pred             CCCCCCcEEEeCCcc--cH---HHHHHHHhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC
Q 027659           61 SKLKGKRVIELGAGC--GV---AGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (220)
Q Consensus        61 ~~~~~~~vLELGcG~--G~---~~l~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~  134 (220)
                      ..++++++|=.|++.  |+   ++..+++.|++|+++|.. +..+.++......              ..+.+...|..+
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~d   91 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL--------------GVKLTVPCDVSD   91 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH--------------TCCEEEECCTTC
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc--------------CCeEEEEcCCCC
Confidence            345789999999853  43   455566779999999974 3444444333322              235677777766


Q ss_pred             CCCccc-------cCCCccEEEEecC
Q 027659          135 EDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       135 ~~~~~~-------~~~~fD~V~~~d~  153 (220)
                      .+....       .-++.|+++.+--
T Consensus        92 ~~~v~~~~~~~~~~~g~iD~lVnnAG  117 (296)
T 3k31_A           92 AESVDNMFKVLAEEWGSLDFVVHAVA  117 (296)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            543211       1247899998765

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=83.81  E-value=1.5  Score=34.60  Aligned_cols=79  Identities=16%  Similarity=0.175  Sum_probs=49.9

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-h-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .++++++|=-|++.|+   ++..+++.|++|++++. + +.++.+...+...             ..++.+...|..+.+
T Consensus        25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~d~~   91 (269)
T 4dmm_A           25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA-------------GGEAFAVKADVSQES   91 (269)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TCCEEEEECCTTSHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc-------------CCcEEEEECCCCCHH
Confidence            4578899999987654   33344566999999886 3 3455444444432             246788887777654


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ...++.|+++.+.-
T Consensus        92 ~v~~~~~~~~~~~g~id~lv~nAg  115 (269)
T 4dmm_A           92 EVEALFAAVIERWGRLDVLVNNAG  115 (269)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            321       11247899998765

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=83.78  E-value=1.4  Score=34.41  Aligned_cols=77  Identities=14%  Similarity=0.241  Sum_probs=46.3

Q ss_pred             CCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhh-HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEV-LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~-l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      +++++|=.|++.| +|..+    ++.|++|+++|. ++. ++.+...+....            ..++.+...|..+.+.
T Consensus         3 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~   69 (260)
T 1x1t_A            3 KGKVAVVTGSTSG-IGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH------------GVKVLYDGADLSKGEA   69 (260)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH------------TSCEEEECCCTTSHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhcc------------CCcEEEEECCCCCHHH
Confidence            5778888887655 34433    456999999997 343 554444443220            1356777777766543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-++.|+++.+--
T Consensus        70 v~~~~~~~~~~~g~iD~lv~~Ag   92 (260)
T 1x1t_A           70 VRGLVDNAVRQMGRIDILVNNAG   92 (260)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCC
Confidence            211       1147899998764

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=83.77  E-value=2.3  Score=35.10  Aligned_cols=31  Identities=29%  Similarity=0.329  Sum_probs=23.9

Q ss_pred             CCCCCcEEEeCC-cc-cHHHHHHHH-hCCeEEEe
Q 027659           62 KLKGKRVIELGA-GC-GVAGFGMAL-LGCNVITT   92 (220)
Q Consensus        62 ~~~~~~vLELGc-G~-G~~~l~la~-~g~~v~~~   92 (220)
                      ...|.+||=+|+ |. |+.++.+|+ .|++++++
T Consensus       165 ~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~  198 (357)
T 1zsy_A          165 LQPGDSVIQNASNSGVGQAVIQIAAALGLRTINV  198 (357)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred             cCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEE
Confidence            447889999997 54 888888886 58986655

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=83.71  E-value=1.8  Score=34.64  Aligned_cols=76  Identities=22%  Similarity=0.219  Sum_probs=49.1

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++||.+|==|++.|+   .+..+++.|++|+++|. .+.++.+.   +..+             .++.....|..+...
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~---~~~g-------------~~~~~~~~Dv~~~~~   89 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAI---AEIG-------------GGAVGIQADSANLAE   89 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH---HHHC-------------TTCEEEECCTTCHHH
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH---HHcC-------------CCeEEEEecCCCHHH
Confidence            4689999999998875   34455667999999998 45444332   2221             355667777766543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.|--
T Consensus        90 v~~~~~~~~~~~G~iDiLVNNAG  112 (273)
T 4fgs_A           90 LDRLYEKVKAEAGRIDVLFVNAG  112 (273)
T ss_dssp             HHHHHHHHHHHHSCEEEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11257899887754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=83.53  E-value=2.1  Score=35.49  Aligned_cols=93  Identities=13%  Similarity=0.070  Sum_probs=56.7

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-C
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~-~  136 (220)
                      ...|.+||=+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+.             . .+  ++..+. .
T Consensus       188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa-------------~-~v--i~~~~~~~  247 (373)
T 2fzw_A          188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGA-------------T-EC--INPQDFSK  247 (373)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTC-------------S-EE--ECGGGCSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCC-------------c-eE--eccccccc
Confidence            44688999999976 777777775 588 7999997 556666542    221             1 11  122210 1


Q ss_pred             Cc----c-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCC-cEEEEE
Q 027659          137 HI----K-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPK-TTILLG  179 (220)
Q Consensus       137 ~~----~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~-g~~~i~  179 (220)
                      ..    . ...+.+|+|+-+--     ....+....++++++ |++++.
T Consensus       248 ~~~~~v~~~~~~g~D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          248 PIQEVLIEMTDGGVDYSFECIG-----NVKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             cHHHHHHHHhCCCCCEEEECCC-----cHHHHHHHHHhhccCCcEEEEE
Confidence            10    0 11237999984422     235567777889999 987754

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=83.48  E-value=1.6  Score=34.59  Aligned_cols=82  Identities=18%  Similarity=0.221  Sum_probs=50.2

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+.++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+.          ...++.+...|..+.+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----------~~~~~~~~~~Dv~~~~~   77 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA----------NGGAIRYEPTDITNEDE   77 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCC----------SSCEEEEEECCTTSHHH
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----------CCceEEEEeCCCCCHHH
Confidence            4578899999987654   23344556999999997 4455554444443221          12367888877766543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ...++.|+++.+.-
T Consensus        78 v~~~~~~~~~~~g~id~lv~nAg  100 (281)
T 3svt_A           78 TARAVDAVTAWHGRLHGVVHCAG  100 (281)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11247899987654

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=83.42  E-value=4.3  Score=32.89  Aligned_cols=100  Identities=14%  Similarity=0.067  Sum_probs=56.6

Q ss_pred             CCCCcEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      +..++|.=+|+|.  +.++..+++.|.+|++. . ++.++.+++    ++....  .+    ...... .......  ..
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~----~g~~~~--~~----~~~~~~-~~~~~~~--~~   82 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEA----TGLRLE--TQ----SFDEQV-KVSASSD--PS   82 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHH----HCEEEE--CS----SCEEEE-CCEEESC--GG
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHh----CCeEEE--cC----CCcEEE-eeeeeCC--HH
Confidence            4567899999997  45666777788899888 6 455554443    232111  00    001000 0000111  11


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                       ....+|+|+.+-. +   ....+++.+...++++..++...
T Consensus        83 -~~~~~D~vilavk~~---~~~~~l~~l~~~l~~~~~iv~~~  120 (318)
T 3hwr_A           83 -AVQGADLVLFCVKST---DTQSAALAMKPALAKSALVLSLQ  120 (318)
T ss_dssp             -GGTTCSEEEECCCGG---GHHHHHHHHTTTSCTTCEEEEEC
T ss_pred             -HcCCCCEEEEEcccc---cHHHHHHHHHHhcCCCCEEEEeC
Confidence             1257899998866 5   46788888888888887665543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=83.32  E-value=1.5  Score=34.34  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=48.7

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEe-cc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++ +. .+..+.+...+...             ..++.+...|..+.+
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~~~~   71 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL-------------GRSALAIKADLTNAA   71 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT-------------TSCCEEEECCTTCHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc-------------CCceEEEEcCCCCHH
Confidence            4578899999987764   333445669999888 44 33444444444322             246778887777654


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       .-++.|+++.+.-
T Consensus        72 ~v~~~~~~~~~~~g~id~lv~nAg   95 (259)
T 3edm_A           72 EVEAAISAAADKFGEIHGLVHVAG   95 (259)
T ss_dssp             HHHHHHHHHHHHHCSEEEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEECCC
Confidence            3211       1247899988763

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=83.29  E-value=11  Score=32.39  Aligned_cols=97  Identities=19%  Similarity=0.168  Sum_probs=53.9

Q ss_pred             CcEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHHHH------------HHHhhhhhccCCCCCCCCCceEEEEe
Q 027659           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRN------------VEWNTSRISQMNPGSDLLGSIQAVEL  130 (220)
Q Consensus        66 ~~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n------------~~~n~~~~~~~~~~~~~~~~v~~~~l  130 (220)
                      ++|.=+|+|. |. ++..+++.|.+|++.|. ++.++.+++.            +..+..           ..++.+.. 
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~-----------~~~l~~t~-   70 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVK-----------AGRLRFGT-   70 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHH-----------TTSEEEES-
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcc-----------cCcEEEEC-
Confidence            4677788875 33 44455567899999998 5555555431            000000           12333321 


Q ss_pred             eeCCCCCccccCCCccEEEEecC-C-CC------CChHHHHHHHHHhhCCCcEEEEEE
Q 027659          131 DWGNEDHIKAVAPPFDYIIGTDV-Y-AE------HLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       131 dw~~~~~~~~~~~~fD~V~~~d~-y-~~------~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                         +..+   .-...|+|+.+-+ . ..      ..+..+++.+...++++..++...
T Consensus        71 ---d~~e---a~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S  122 (450)
T 3gg2_A           71 ---EIEQ---AVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS  122 (450)
T ss_dssp             ---CHHH---HGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             ---CHHH---HHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence               1111   1235788887654 2 11      146677778888888877665544

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=83.26  E-value=1.4  Score=34.21  Aligned_cols=76  Identities=22%  Similarity=0.320  Sum_probs=47.1

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+   +             .++.+...|..+.+.
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~~~~   66 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI---G-------------KKARAIAADISDPGS   66 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C-------------TTEEECCCCTTCHHH
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------------CceEEEEcCCCCHHH
Confidence            4578999999987654   33344566999999997 44333332221   1             356777777766543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       ..++.|+++.+--
T Consensus        67 v~~~~~~~~~~~g~id~lv~nAg   89 (247)
T 3rwb_A           67 VKALFAEIQALTGGIDILVNNAS   89 (247)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHCCCCCEEEECCC
Confidence            211       1247899998765

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=83.10  E-value=9.1  Score=30.35  Aligned_cols=100  Identities=22%  Similarity=0.235  Sum_probs=52.1

Q ss_pred             CcEEEeCCcc-c-HHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGC-G-VAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~-G-~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++|.=+|+|. | .++..+++.|.+|++.|. ++.++.+++.    +..... .      ..............+....-
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~----g~~~~~-~------~~~~~~~~~~~~~~~~~~~~   72 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN----GLIADF-N------GEEVVANLPIFSPEEIDHQN   72 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----CEEEEE-T------TEEEEECCCEECGGGCCTTS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC----CEEEEe-C------CCeeEecceeecchhhcccC
Confidence            4788899885 3 344455566889999998 5555444322    221000 0      00000001111111110011


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ..+|+|+.+-. +   ....+++.+...++++..++..
T Consensus        73 ~~~d~vi~~v~~~---~~~~v~~~l~~~l~~~~~iv~~  107 (316)
T 2ew2_A           73 EQVDLIIALTKAQ---QLDAMFKAIQPMITEKTYVLCL  107 (316)
T ss_dssp             CCCSEEEECSCHH---HHHHHHHHHGGGCCTTCEEEEC
T ss_pred             CCCCEEEEEeccc---cHHHHHHHHHHhcCCCCEEEEe
Confidence            27899998766 4   3577777777778777655443

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=83.03  E-value=2.1  Score=35.17  Aligned_cols=43  Identities=21%  Similarity=0.130  Sum_probs=33.2

Q ss_pred             CcEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (220)
Q Consensus        66 ~~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (220)
                      .+|-=||||+ |. .+..+|..|.+|++.|. ++.++.+..+++.+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~   52 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKE   52 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHH
Confidence            4788999997 43 55666778999999998 66887777777654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=83.02  E-value=1.6  Score=36.35  Aligned_cols=94  Identities=16%  Similarity=0.115  Sum_probs=56.9

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC-C
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN-E  135 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~-~  135 (220)
                      ....|.+||=+|+|. |+.++.+|+ .|+ +|+++|. ++-++.+++    .+.             . .+  .+..+ .
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa-------------~-~v--i~~~~~~  249 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGV-------------N-EF--VNPKDHD  249 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTC-------------C-EE--ECGGGCS
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCC-------------c-EE--EccccCc
Confidence            344788999999986 888888875 588 7999996 555555432    221             1 11  12111 1


Q ss_pred             CCc-----cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCC-cEEEEE
Q 027659          136 DHI-----KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPK-TTILLG  179 (220)
Q Consensus       136 ~~~-----~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~-g~~~i~  179 (220)
                      ...     ....+.+|+|+-+--     ....+....++++++ |++++.
T Consensus       250 ~~~~~~i~~~~~gg~D~vid~~g-----~~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          250 KPIQEVIVDLTDGGVDYSFECIG-----NVSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             SCHHHHHHHHTTSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEEC
T ss_pred             hhHHHHHHHhcCCCCCEEEECCC-----CHHHHHHHHHHhhccCCEEEEE
Confidence            110     011337999984422     245667777889996 887764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=83.02  E-value=3.3  Score=33.35  Aligned_cols=43  Identities=19%  Similarity=0.064  Sum_probs=32.2

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecchhhHHHHHH
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQIEVLPLLKR  103 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~~~~l~~~~~  103 (220)
                      ....|.+||=+|+|. |+..+.+|+ .|++|+++|.++-++.+++
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~  183 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAK  183 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEChhhHHHHHH
Confidence            345788999999976 888888875 5999999994345555543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=82.80  E-value=2.3  Score=35.26  Aligned_cols=93  Identities=12%  Similarity=0.082  Sum_probs=56.0

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-C
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-D  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~-~  136 (220)
                      ...|.+||=+|+|. |+..+.+|+ .|+ +|+++|. ++-++.+++    .+.             . .+  ++..+. .
T Consensus       189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa-------------~-~v--i~~~~~~~  248 (374)
T 2jhf_A          189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGA-------------T-EC--VNPQDYKK  248 (374)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC-------------S-EE--ECGGGCSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC-------------c-eE--ecccccch
Confidence            44688999999876 777777775 588 7999997 555665542    221             1 11  122210 1


Q ss_pred             Cc----c-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCC-cEEEEE
Q 027659          137 HI----K-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPK-TTILLG  179 (220)
Q Consensus       137 ~~----~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~-g~~~i~  179 (220)
                      ..    . ...+.+|+|+-+--     ....+....++++++ |++++.
T Consensus       249 ~~~~~~~~~~~~g~D~vid~~g-----~~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          249 PIQEVLTEMSNGGVDFSFEVIG-----RLDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSC-----CHHHHHHHHHHBCTTTCEEEEC
T ss_pred             hHHHHHHHHhCCCCcEEEECCC-----CHHHHHHHHHHhhcCCcEEEEe
Confidence            10    0 11237999984422     234566777788998 887754

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=82.76  E-value=1.7  Score=34.39  Aligned_cols=81  Identities=21%  Similarity=0.181  Sum_probs=47.9

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+...+...+.          ...++.+...|..+.+..
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v   73 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV----------SEKQVNSVVADVTTEDGQ   73 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC----------CCcceEEEEecCCCHHHH
Confidence            467889988876553   22333456999999997 4444444443332110          012678888887765432


Q ss_pred             cc-------cCCCccEEEEecC
Q 027659          139 KA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~~-------~~~~fD~V~~~d~  153 (220)
                      ..       .-+..|+++.+--
T Consensus        74 ~~~~~~~~~~~g~iD~lv~nAg   95 (280)
T 1xkq_A           74 DQIINSTLKQFGKIDVLVNNAG   95 (280)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCC
Confidence            11       1246899998765

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=82.68  E-value=6.6  Score=27.44  Aligned_cols=37  Identities=14%  Similarity=0.200  Sum_probs=23.9

Q ss_pred             CcEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHH
Q 027659           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLK  102 (220)
Q Consensus        66 ~~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~  102 (220)
                      .+|+=+|||. |. ++..+...|.+|+++|. ++.++.++
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~   47 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELR   47 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence            4788999875 32 22333345889999998 55555443

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=82.66  E-value=3.4  Score=33.09  Aligned_cols=66  Identities=12%  Similarity=0.171  Sum_probs=44.7

Q ss_pred             CCCccEEEEecC--CCCCChHHHHH------HH----HHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEeeCC
Q 027659          142 APPFDYIIGTDV--YAEHLLEPLLQ------TI----FALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLVPKA  207 (220)
Q Consensus       142 ~~~fD~V~~~d~--y~~~~~~~l~~------~l----~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v~~~  207 (220)
                      -++||+|+.+--  |....++...+      ++    ..+|+|||.+++-...-.+...+.....+.+.|.-.++.+-
T Consensus       209 ~grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYGyADR~SE~vV~alARkF~~~rv~~P  286 (324)
T 3trk_A          209 LGRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSSRALKP  286 (324)
T ss_dssp             GCCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEECC
T ss_pred             CCceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeecccccchHHHHHHHHhhheeeeeecC
Confidence            379999999876  76555443322      22    33478999998766554444567778888889887776554

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=82.54  E-value=2.1  Score=33.85  Aligned_cols=78  Identities=13%  Similarity=0.137  Sum_probs=50.6

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++||.+|=-|++.|+   .+..+++.|++|+++|. .+..+.++. +...             ..++.+...|..+...
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~-~~~~-------------~~~~~~~~~Dv~~~~~   69 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDA-LAQR-------------QPRATYLPVELQDDAQ   69 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHH-HHHH-------------CTTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHH-HHhc-------------CCCEEEEEeecCCHHH
Confidence            4689999999998876   34556677999999986 333333322 2222             2467788878776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.|--
T Consensus        70 v~~~v~~~~~~~G~iDiLVNnAG   92 (258)
T 4gkb_A           70 CRDAVAQTIATFGRLDGLVNNAG   92 (258)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCC
Confidence            21       11257899988764

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=82.51  E-value=2.6  Score=34.34  Aligned_cols=61  Identities=16%  Similarity=0.065  Sum_probs=37.9

Q ss_pred             CCCCcEEEeCCcccHHHHH----HHHhCCeEEEec-c-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFG----MALLGCNVITTD-Q-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~----la~~g~~v~~~D-~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .+++++|=.|++.|+ |..    +++.|++|+++| . ++.++.+...+....            ..++.+..+|..+..
T Consensus        44 l~~k~~lVTGas~GI-G~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~d~~  110 (328)
T 2qhx_A           44 PTVPVALVTGAAKRL-GRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR------------PNSAITVQADLSNVA  110 (328)
T ss_dssp             -CCCEEEETTCSSHH-HHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS------------TTCEEEEECCCSSSC
T ss_pred             cCCCEEEEECCCCHH-HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc------------CCeEEEEEeeCCCch
Confidence            467889988876554 333    345699999998 6 444444444433111            236788888887765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=82.28  E-value=2.7  Score=29.31  Aligned_cols=69  Identities=23%  Similarity=0.293  Sum_probs=39.6

Q ss_pred             CCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..++|+=+|||.  .|..++    ..|.+|+++|. ++.++.++.    .               .+.+...|..+...+
T Consensus         5 ~~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~----~---------------~~~~~~gd~~~~~~l   63 (141)
T 3llv_A            5 GRYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED----E---------------GFDAVIADPTDESFY   63 (141)
T ss_dssp             -CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T---------------TCEEEECCTTCHHHH
T ss_pred             CCCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----C---------------CCcEEECCCCCHHHH
Confidence            346899999965  444444    45889999997 454444432    1               234555444433222


Q ss_pred             cc-cCCCccEEEEecC
Q 027659          139 KA-VAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~~-~~~~fD~V~~~d~  153 (220)
                      .. ....+|+|+.+-.
T Consensus        64 ~~~~~~~~d~vi~~~~   79 (141)
T 3llv_A           64 RSLDLEGVSAVLITGS   79 (141)
T ss_dssp             HHSCCTTCSEEEECCS
T ss_pred             HhCCcccCCEEEEecC
Confidence            11 2357899987654

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=82.20  E-value=1.4  Score=34.81  Aligned_cols=81  Identities=16%  Similarity=0.133  Sum_probs=46.9

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+.....          ...++.+...|..+.+..
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~~   73 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV----------SEQNVNSVVADVTTDAGQ   73 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccc----------CCCceeEEecccCCHHHH
Confidence            467888888876543   22233456999999997 4444444433321110          023577778777665432


Q ss_pred             cc-------cCCCccEEEEecC
Q 027659          139 KA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~~-------~~~~fD~V~~~d~  153 (220)
                      ..       .-+..|+++.+--
T Consensus        74 ~~~~~~~~~~~g~id~lv~~Ag   95 (278)
T 1spx_A           74 DEILSTTLGKFGKLDILVNNAG   95 (278)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            11       1137899988754

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=82.20  E-value=1.9  Score=33.33  Aligned_cols=76  Identities=22%  Similarity=0.231  Sum_probs=45.3

Q ss_pred             CCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-h-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      +++++|=.|++.| +|..+    ++.|++|++++. + +.++.+.+.+...             ..++.+...|..+.+.
T Consensus         3 ~~k~vlVTGas~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~~   68 (246)
T 2uvd_A            3 KGKVALVTGASRG-IGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL-------------GSDAIAVRADVANAED   68 (246)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc-------------CCcEEEEEcCCCCHHH
Confidence            5778888887654 34443    456999999876 4 3444443333322             2357777777766543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-+..|+++.+--
T Consensus        69 ~~~~~~~~~~~~g~id~lv~nAg   91 (246)
T 2uvd_A           69 VTNMVKQTVDVFGQVDILVNNAG   91 (246)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1147899998755

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=82.18  E-value=1.2  Score=35.84  Aligned_cols=80  Identities=18%  Similarity=0.194  Sum_probs=49.9

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+            ..++.+...|..+.+.
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dv~d~~~  105 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG------------AGNVIGVRLDVSDPGS  105 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS------------SSCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC------------CCcEEEEEEeCCCHHH
Confidence            4578899999987654   33344556999999997 444444443333221            2467888888776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+.-
T Consensus       106 v~~~~~~~~~~~g~iD~lvnnAg  128 (293)
T 3rih_A          106 CADAARTVVDAFGALDVVCANAG  128 (293)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11247899988765

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=82.04  E-value=2  Score=34.16  Aligned_cols=80  Identities=14%  Similarity=0.163  Sum_probs=49.7

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-h-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...++++|=-|++.|+   ++..+++.|++|+++|. . +.++.+...+....            ..++.+...|..+.+
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~------------~~~~~~~~~Dv~d~~   89 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS------------SGTVLHHPADMTKPS   89 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC------------SSCEEEECCCTTCHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc------------CCcEEEEeCCCCCHH
Confidence            4578899999987654   23344456999999986 3 34444444333221            246788887777654


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ..-++.|+++.+.-
T Consensus        90 ~v~~~~~~~~~~~g~iD~lv~nAg  113 (281)
T 3v2h_A           90 EIADMMAMVADRFGGADILVNNAG  113 (281)
T ss_dssp             HHHHHHHHHHHHTSSCSEEEECCC
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCC
Confidence            321       11247899998765

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=82.03  E-value=6.4  Score=33.79  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=61.3

Q ss_pred             CcEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC-------CCCceEEEEeeeCCC
Q 027659           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD-------LLGSIQAVELDWGNE  135 (220)
Q Consensus        66 ~~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~-------~~~~v~~~~ldw~~~  135 (220)
                      -+|-=+|+|. |+ ++..+|+.|.+|++.|. ++.++.+++.  .+..    ..|...       ...++.+..    +.
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g--~~~~----~epgl~~~~~~~~~~g~l~~tt----d~   78 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQN--VMPI----YEPGLDALVASNVKAGRLSFTT----DL   78 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTT--CCSS----CCTTHHHHHHHHHHTTCEEEES----CH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcC--CCCc----cCCCHHHHHHhhcccCCEEEEC----CH
Confidence            4677788886 54 34556677999999998 5566655431  0000    000000       012333321    11


Q ss_pred             CCccccCCCccEEEEecC--CCC-------CChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh
Q 027659          136 DHIKAVAPPFDYIIGTDV--YAE-------HLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  196 (220)
Q Consensus       136 ~~~~~~~~~fD~V~~~d~--y~~-------~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~  196 (220)
                      .   ..-...|+|+.+=+  ...       ..+...++.+...++++..++.... -.+.+.+...+.+.
T Consensus        79 ~---ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~ST-v~pgtt~~l~~~l~  144 (446)
T 4a7p_A           79 A---EGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKST-VPVGTGDEVERIIA  144 (446)
T ss_dssp             H---HHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSC-CCTTHHHHHHHHHH
T ss_pred             H---HHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCC-CCchHHHHHHHHHH
Confidence            1   11245788887733  211       1367777888888888877665442 33344444444443

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=82.03  E-value=2.4  Score=35.16  Aligned_cols=68  Identities=28%  Similarity=0.320  Sum_probs=39.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHH---hCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGVAGFGMAL---LGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~---~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      +.++||=||||  ..|-.+++   ...+|+..|.. +.++.++                    ..+....+|..+.+.+.
T Consensus        15 ~~mkilvlGaG--~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~--------------------~~~~~~~~d~~d~~~l~   72 (365)
T 3abi_A           15 RHMKVLILGAG--NIGRAIAWDLKDEFDVYIGDVNNENLEKVK--------------------EFATPLKVDASNFDKLV   72 (365)
T ss_dssp             -CCEEEEECCS--HHHHHHHHHHTTTSEEEEEESCHHHHHHHT--------------------TTSEEEECCTTCHHHHH
T ss_pred             CccEEEEECCC--HHHHHHHHHHhcCCCeEEEEcCHHHHHHHh--------------------ccCCcEEEecCCHHHHH
Confidence            44579999995  44444443   34679888873 3333221                    13344555655544333


Q ss_pred             ccCCCccEEEEecC
Q 027659          140 AVAPPFDYIIGTDV  153 (220)
Q Consensus       140 ~~~~~fD~V~~~d~  153 (220)
                      ..-...|+|+++-+
T Consensus        73 ~~~~~~DvVi~~~p   86 (365)
T 3abi_A           73 EVMKEFELVIGALP   86 (365)
T ss_dssp             HHHTTCSEEEECCC
T ss_pred             HHHhCCCEEEEecC
Confidence            33357899998766

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=82.02  E-value=8.7  Score=26.19  Aligned_cols=33  Identities=21%  Similarity=0.432  Sum_probs=21.4

Q ss_pred             CCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHH
Q 027659           65 GKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLP   99 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~   99 (220)
                      +++|+=+|+|.  .|..+    ++.|.+|+++|. ++.++
T Consensus         4 ~m~i~IiG~G~--iG~~~a~~L~~~g~~v~~~d~~~~~~~   41 (140)
T 1lss_A            4 GMYIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICK   41 (140)
T ss_dssp             -CEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             CCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence            46788888864  44444    345888999997 44443

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=81.97  E-value=2.3  Score=33.73  Aligned_cols=77  Identities=16%  Similarity=0.149  Sum_probs=47.6

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...   .             ..++.+...|..+.+
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~---~-------------~~~~~~~~~Dv~d~~   86 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---I-------------GSKAFGVRVDVSSAK   86 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---H-------------CTTEEEEECCTTCHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---h-------------CCceEEEEecCCCHH
Confidence            35678899999987654   23344556999999997 4433322221   1             236777787776654


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       .-++.|+++.+--
T Consensus        87 ~v~~~~~~~~~~~g~iD~lv~nAg  110 (277)
T 4dqx_A           87 DAESMVEKTTAKWGRVDVLVNNAG  110 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            3211       1247899988765

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=81.90  E-value=6.9  Score=32.38  Aligned_cols=95  Identities=20%  Similarity=0.206  Sum_probs=57.4

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ....|.+||=+|+|. |+.++.+|+ .|+ +|+++|. ++-++.+++    .+.             . .+  .+..+..
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa-------------~-~v--i~~~~~~  238 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----VGA-------------T-AT--VDPSAGD  238 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----HTC-------------S-EE--ECTTSSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCC-------------C-EE--ECCCCcC
Confidence            344788999999986 888887775 588 7999997 445555443    221             1 11  1111111


Q ss_pred             ---Ccc----ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 ---HIK----AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 ---~~~----~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                         ...    ...+.+|+|+-+--     ....+....++++++|++++..
T Consensus       239 ~~~~i~~~~~~~~gg~Dvvid~~G-----~~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          239 VVEAIAGPVGLVPGGVDVVIECAG-----VAETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             HHHHHHSTTSSSTTCEEEEEECSC-----CHHHHHHHHHHEEEEEEEEECS
T ss_pred             HHHHHHhhhhccCCCCCEEEECCC-----CHHHHHHHHHHhccCCEEEEEe
Confidence               000    11347999884321     2456677778899999887653

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=81.73  E-value=2.1  Score=34.36  Aligned_cols=80  Identities=23%  Similarity=0.184  Sum_probs=48.0

Q ss_pred             CCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+++++|=.|++.| +|..+    ++.|++|+++|. ++.++.+...+...+.          ...++.+...|..+.+.
T Consensus        24 l~~k~vlVTGas~g-IG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----------~~~~~~~~~~Dv~d~~~   92 (297)
T 1xhl_A           24 FSGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV----------PAEKINAVVADVTEASG   92 (297)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----------CCceEEEEecCCCCHHH
Confidence            46788998887655 34433    456999999997 4444444444432210          01157788878776543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-++.|+++.+--
T Consensus        93 v~~~~~~~~~~~g~iD~lvnnAG  115 (297)
T 1xhl_A           93 QDDIINTTLAKFGKIDILVNNAG  115 (297)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCC
Confidence            211       1247899998764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=81.53  E-value=1.7  Score=34.55  Aligned_cols=79  Identities=19%  Similarity=0.221  Sum_probs=49.3

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hh-------hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-------VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL  130 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~-------~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~l  130 (220)
                      ..+++++|=-|++.|+   ++..+++.|++|+++|. .+       .++.+...+...+             .++.+...
T Consensus         6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~   72 (285)
T 3sc4_A            6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAG-------------GQALPIVG   72 (285)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHT-------------SEEEEEEC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcC-------------CcEEEEEC
Confidence            3578899999987664   23334456899999986 32       2444444444332             46788887


Q ss_pred             eeCCCCCcc-------ccCCCccEEEEecC
Q 027659          131 DWGNEDHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       131 dw~~~~~~~-------~~~~~fD~V~~~d~  153 (220)
                      |..+.+...       ...++.|+++.+.-
T Consensus        73 Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  102 (285)
T 3sc4_A           73 DIRDGDAVAAAVAKTVEQFGGIDICVNNAS  102 (285)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            877654321       11247899988765

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=81.48  E-value=2.2  Score=33.29  Aligned_cols=76  Identities=22%  Similarity=0.279  Sum_probs=46.5

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+++++|=.|++.|+   ++..+++.|++|+++|. .+.++.+...+                ..++.+...|..+.+.
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~D~~~~~~   68 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI----------------GPAAYAVQMDVTRQDS   68 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------------CTTEEEEECCTTCHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------------CCCceEEEeeCCCHHH
Confidence            3578899999976554   23344456999999997 34333322211                1356777777766543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+.-
T Consensus        69 v~~~~~~~~~~~g~id~lv~~Ag   91 (259)
T 4e6p_A           69 IDAAIAATVEHAGGLDILVNNAA   91 (259)
T ss_dssp             HHHHHHHHHHHSSSCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11247899998765

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=81.45  E-value=2.8  Score=32.16  Aligned_cols=78  Identities=21%  Similarity=0.211  Sum_probs=47.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .+++++|=.|++. .+|..++    +.|++|++++. ++.++.+...+....            ..++.+...|..+...
T Consensus         5 ~~~~~vlVtGasg-giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~~~~~   71 (248)
T 2pnf_A            5 LQGKVSLVTGSTR-GIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKY------------GVKAHGVEMNLLSEES   71 (248)
T ss_dssp             CTTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhc------------CCceEEEEccCCCHHH
Confidence            4678889888754 4444444    45899999987 444544444443211            2357777777665443


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       ..+.+|+|+.+.-
T Consensus        72 ~~~~~~~~~~~~~~~d~vi~~Ag   94 (248)
T 2pnf_A           72 INKAFEEIYNLVDGIDILVNNAG   94 (248)
T ss_dssp             HHHHHHHHHHHSSCCSEEEECCC
T ss_pred             HHHHHHHHHHhcCCCCEEEECCC
Confidence            211       1247899988765

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=81.42  E-value=1.8  Score=33.48  Aligned_cols=78  Identities=19%  Similarity=0.223  Sum_probs=47.2

Q ss_pred             CCCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      +...++++||=.|++.|+   ++..+++.|++|+++|. .+.++.+...+                ..++.+...|..+.
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------------~~~~~~~~~D~~~~   72 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL----------------KDNYTIEVCNLANK   72 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------------CSSEEEEECCTTSH
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----------------ccCccEEEcCCCCH
Confidence            356688999999987654   23344456999999997 44444332221                13567777666554


Q ss_pred             CCcc---ccCCCccEEEEecC
Q 027659          136 DHIK---AVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~---~~~~~fD~V~~~d~  153 (220)
                      ....   ....+.|+++.+.-
T Consensus        73 ~~~~~~~~~~~~id~li~~Ag   93 (249)
T 3f9i_A           73 EECSNLISKTSNLDILVCNAG   93 (249)
T ss_dssp             HHHHHHHHTCSCCSEEEECCC
T ss_pred             HHHHHHHHhcCCCCEEEECCC
Confidence            3221   11246899988764

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=81.40  E-value=1.9  Score=34.47  Aligned_cols=85  Identities=18%  Similarity=0.303  Sum_probs=50.5

Q ss_pred             CCCCCCCcEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC
Q 027659           60 PSKLKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~  134 (220)
                      +...++++||=.|++. .+|..++    +.|++|+++|. ++.++.+...+......        ....++.+...|..+
T Consensus        13 ~~~l~~k~vlVTGasg-gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~D~~~   83 (303)
T 1yxm_A           13 PGLLQGQVAIVTGGAT-GIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP--------TKQARVIPIQCNIRN   83 (303)
T ss_dssp             TTTTTTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT--------TCCCCEEEEECCTTC
T ss_pred             cCCCCCCEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccc--------cCCccEEEEecCCCC
Confidence            3456788999999754 4444444    45899999987 44454444444331100        013467888887776


Q ss_pred             CCCccc-------cCCCccEEEEecC
Q 027659          135 EDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       135 ~~~~~~-------~~~~fD~V~~~d~  153 (220)
                      ......       ..+++|+|+.+.-
T Consensus        84 ~~~v~~~~~~~~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           84 EEEVNNLVKSTLDTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            543211       1136899998764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=81.30  E-value=2.5  Score=34.51  Aligned_cols=93  Identities=24%  Similarity=0.209  Sum_probs=54.5

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-  137 (220)
                      ...|.+||-+|+|. |+..+.+|+ .|++|+++|. ++-++.+++    .+.             . .  ..|..+... 
T Consensus       162 ~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa-------------~-~--~~d~~~~~~~  221 (339)
T 1rjw_A          162 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGA-------------D-L--VVNPLKEDAA  221 (339)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC-------------S-E--EECTTTSCHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCC-------------C-E--EecCCCccHH
Confidence            34688999999975 777777775 5899999997 455554432    221             1 1  122222110 


Q ss_pred             --ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          138 --IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       138 --~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                        .......+|+|+-+--     ....+....++++++|++++.
T Consensus       222 ~~~~~~~~~~d~vid~~g-----~~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          222 KFMKEKVGGVHAAVVTAV-----SKPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             HHHHHHHSSEEEEEESSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHhCCCCEEEECCC-----CHHHHHHHHHHhhcCCEEEEe
Confidence              0000146888875422     234566667778888877654

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=81.26  E-value=2.6  Score=33.50  Aligned_cols=80  Identities=24%  Similarity=0.404  Sum_probs=49.2

Q ss_pred             CCCCCCcEEEeCCcccHHHHHH----HHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGM----ALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ...+++++|=.|++.| +|..+    ++.|++|+++|. ++.++.+...+....            ..++.+...|..+.
T Consensus        22 ~~l~~k~vlITGasgg-iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~------------~~~~~~~~~Dl~~~   88 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT------------GNKVHAIQCDVRDP   88 (302)
T ss_dssp             TTTTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCH
T ss_pred             ccCCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------------CCceEEEEeCCCCH
Confidence            4467889999997654 34444    455899999997 444444444333221            13678888777765


Q ss_pred             CCcc-------ccCCCccEEEEecC
Q 027659          136 DHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d~  153 (220)
                      +...       ...+++|+|+.+.-
T Consensus        89 ~~~~~~~~~~~~~~g~id~li~~Ag  113 (302)
T 1w6u_A           89 DMVQNTVSELIKVAGHPNIVINNAA  113 (302)
T ss_dssp             HHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCC
Confidence            4321       11346899998765

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=81.17  E-value=1.4  Score=40.66  Aligned_cols=40  Identities=25%  Similarity=0.275  Sum_probs=33.2

Q ss_pred             CcEEEeCCcccHHHHHHHHhC------Ce-EEEecc-hhhHHHHHHHH
Q 027659           66 KRVIELGAGCGVAGFGMALLG------CN-VITTDQ-IEVLPLLKRNV  105 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g------~~-v~~~D~-~~~l~~~~~n~  105 (220)
                      .+||||-||+|-+++.+.+.|      .+ +.++|. +.|++..+.|.
T Consensus       213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            479999999999999888776      45 678998 56888888884

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=81.09  E-value=2.1  Score=40.62  Aligned_cols=42  Identities=17%  Similarity=0.256  Sum_probs=34.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-e-EEEecc-hhhHHHHHHHH
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-N-VITTDQ-IEVLPLLKRNV  105 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~-v~~~D~-~~~l~~~~~n~  105 (220)
                      ...+++||-||.|-+++.+.+.|. + |.++|+ +.+.+..+.|.
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~  583 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN  583 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC
Confidence            345899999999999999999997 5 778999 55777777663

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=81.06  E-value=2.7  Score=35.35  Aligned_cols=41  Identities=29%  Similarity=0.368  Sum_probs=31.1

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHH
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK  102 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~  102 (220)
                      ...|.+||=+|+|. |+.++.+|+ .|+ +|+++|. ++-++.++
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~  255 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK  255 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            44788999999986 878777775 588 7999997 55555554

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=81.05  E-value=6.8  Score=33.90  Aligned_cols=97  Identities=15%  Similarity=0.109  Sum_probs=56.2

Q ss_pred             CCCcEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHHHHH------------HHhhhhhccCCCCCCCCCceEEE
Q 027659           64 KGKRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNV------------EWNTSRISQMNPGSDLLGSIQAV  128 (220)
Q Consensus        64 ~~~~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n~------------~~n~~~~~~~~~~~~~~~~v~~~  128 (220)
                      ..++|.=+|+|. |+ ++..+++.|.+|++.|. ++.++.+++..            ..+..           ..++.+.
T Consensus         7 ~~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~-----------~~~l~~t   75 (478)
T 2y0c_A            7 GSMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRS-----------AGRLRFS   75 (478)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHH-----------TTCEEEE
T ss_pred             CCceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcc-----------cCCEEEE
Confidence            346888899996 54 56667778999999998 55666554421            00000           1123332


Q ss_pred             EeeeCCCCCccccCCCccEEEEecC--C------CCCChHHHHHHHHHhhCCCcEEEE
Q 027659          129 ELDWGNEDHIKAVAPPFDYIIGTDV--Y------AEHLLEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       129 ~ldw~~~~~~~~~~~~fD~V~~~d~--y------~~~~~~~l~~~l~~~l~~~g~~~i  178 (220)
                      .    +...   .-...|+|+.+-+  .      +.......++.+...++++..++.
T Consensus        76 t----d~~~---a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~  126 (478)
T 2y0c_A           76 T----DIEA---AVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVD  126 (478)
T ss_dssp             C----CHHH---HHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             C----CHHH---HhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEE
Confidence            1    1100   1135788887643  1      113466777778888888776544

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=81.04  E-value=2.2  Score=33.74  Aligned_cols=79  Identities=22%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecch-h-------hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEe
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-E-------VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVEL  130 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~-~-------~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~l  130 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.. +       .++.+...+...             ..++.+...
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~   69 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA-------------GGQGLALKC   69 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH-------------TSEEEEEEC
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc-------------CCeEEEEeC
Confidence            3578899999998764   233445669999999862 2       134444333333             246788888


Q ss_pred             eeCCCCCcc-------ccCCCccEEEEecC
Q 027659          131 DWGNEDHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       131 dw~~~~~~~-------~~~~~fD~V~~~d~  153 (220)
                      |..+.....       ...++.|+++.+.-
T Consensus        70 Dv~~~~~v~~~~~~~~~~~g~iD~lvnnAG   99 (274)
T 3e03_A           70 DIREEDQVRAAVAATVDTFGGIDILVNNAS   99 (274)
T ss_dssp             CTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            877654321       11247899988765

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=80.74  E-value=3.8  Score=32.26  Aligned_cols=79  Identities=27%  Similarity=0.270  Sum_probs=48.5

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc--------------hhhHHHHHHHHHHhhhhhccCCCCCCCCCc
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--------------IEVLPLLKRNVEWNTSRISQMNPGSDLLGS  124 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~--------------~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~  124 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|.              .+.++.+.+.+...             ..+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~   74 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA-------------NRR   74 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT-------------TCC
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc-------------CCe
Confidence            4678999999987664   33344566999999875              12333333222222             246


Q ss_pred             eEEEEeeeCCCCCccc-------cCCCccEEEEecC
Q 027659          125 IQAVELDWGNEDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       125 v~~~~ldw~~~~~~~~-------~~~~fD~V~~~d~  153 (220)
                      +.+...|..+.+....       .-++.|+++.+--
T Consensus        75 ~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lvnnAg  110 (277)
T 3tsc_A           75 IVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAG  110 (277)
T ss_dssp             EEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7888877776543211       1247899998765

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=80.50  E-value=2.2  Score=34.95  Aligned_cols=91  Identities=22%  Similarity=0.205  Sum_probs=53.5

Q ss_pred             CCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC---
Q 027659           64 KGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED---  136 (220)
Q Consensus        64 ~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~---  136 (220)
                      .|.+||-+|+|. |...+.+|+ .|+ +|+++|. ++-++.+++    .+.             . .+  .+..+..   
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~----~Ga-------------~-~~--~~~~~~~~~~  226 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK----VGA-------------D-YV--INPFEEDVVK  226 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH----HTC-------------S-EE--ECTTTSCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCC-------------C-EE--ECCCCcCHHH
Confidence            788999999975 777777775 588 8999997 445554432    121             0 11  1211111   


Q ss_pred             Cccc--cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          137 HIKA--VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       137 ~~~~--~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ....  ....+|+|+-+-.     ....+....++++++|++++.
T Consensus       227 ~v~~~~~g~g~D~vid~~g-----~~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          227 EVMDITDGNGVDVFLEFSG-----APKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             HHHHHTTTSCEEEEEECSC-----CHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHcCCCCCCEEEECCC-----CHHHHHHHHHHHhcCCEEEEE
Confidence            0100  1236898885422     234566667778888877654

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=80.37  E-value=2  Score=33.83  Aligned_cols=76  Identities=22%  Similarity=0.184  Sum_probs=47.8

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++++++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+   +             .++.+...|..+.+.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~~~~   71 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV---G-------------RGAVHHVVDLTNEVS   71 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH---C-------------TTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---C-------------CCeEEEECCCCCHHH
Confidence            4578899999987654   33344566999999997 44444333322   1             256777777766543


Q ss_pred             ccc-------cCCCccEEEEecC
Q 027659          138 IKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~~-------~~~~fD~V~~~d~  153 (220)
                      ...       .-++.|+++.+.-
T Consensus        72 v~~~~~~~~~~~g~id~lv~nAg   94 (271)
T 3tzq_B           72 VRALIDFTIDTFGRLDIVDNNAA   94 (271)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            211       1247899998765

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=80.36  E-value=2.4  Score=32.56  Aligned_cols=77  Identities=18%  Similarity=0.235  Sum_probs=45.2

Q ss_pred             CCCCcEEEeCCcccHHHHHH----HHhCCeEEEe-cc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGM----ALLGCNVITT-DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~l----a~~g~~v~~~-D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .+++++|=.|++.| +|..+    ++.|++|+++ +. ++.++.+.+.+...             ..++.+...|..+.+
T Consensus         3 l~~~~vlItGasgg-iG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~   68 (247)
T 2hq1_A            3 LKGKTAIVTGSSRG-LGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA-------------GINVVVAKGDVKNPE   68 (247)
T ss_dssp             TTTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT-------------TCCEEEEESCTTSHH
T ss_pred             CCCcEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc-------------CCcEEEEECCCCCHH
Confidence            35778888887644 44444    4558999988 44 34444444444332             236778887776654


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       ..+..|+|+.+.-
T Consensus        69 ~~~~~~~~~~~~~~~~d~vi~~Ag   92 (247)
T 2hq1_A           69 DVENMVKTAMDAFGRIDILVNNAG   92 (247)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECC-
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCC
Confidence            3211       1137899988754

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=80.31  E-value=2.5  Score=32.73  Aligned_cols=77  Identities=18%  Similarity=0.183  Sum_probs=46.5

Q ss_pred             CCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-h-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-I-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .++++|=-|++.|+   ++..+++.|++|+++|. + +..+.+.+.+...             ..++.+...|..+.+..
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Dv~d~~~v   69 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK-------------GVDSFAIQANVADADEV   69 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------TSCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc-------------CCcEEEEEccCCCHHHH
Confidence            46778888876554   22334456999988875 3 4444444444433             23677778777665432


Q ss_pred             cc-------cCCCccEEEEecC
Q 027659          139 KA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~~-------~~~~fD~V~~~d~  153 (220)
                      ..       ..++.|+++.+.-
T Consensus        70 ~~~~~~~~~~~g~id~lv~nAg   91 (246)
T 3osu_A           70 KAMIKEVVSQFGSLDVLVNNAG   91 (246)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            11       1247899988765

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=80.21  E-value=2.1  Score=33.39  Aligned_cols=75  Identities=23%  Similarity=0.204  Sum_probs=44.4

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++++++|=.|++.|+   ++..+++.|++|+++|. ++.++.+.+.+   +             .++.+...|..+.+..
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~D~~~~~~~   66 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---G-------------DAARYQHLDVTIEEDW   66 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---G-------------GGEEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------------CceeEEEecCCCHHHH
Confidence            467889999986554   22334456999999997 44333222111   1             2567777777665432


Q ss_pred             cc-------cCCCccEEEEecC
Q 027659          139 KA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~~-------~~~~fD~V~~~d~  153 (220)
                      ..       .-++.|+++.+--
T Consensus        67 ~~~~~~~~~~~g~iD~lv~nAg   88 (254)
T 1hdc_A           67 QRVVAYAREEFGSVDGLVNNAG   88 (254)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCC
Confidence            11       1137899988764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=80.17  E-value=4.8  Score=32.77  Aligned_cols=43  Identities=14%  Similarity=0.098  Sum_probs=32.1

Q ss_pred             CCCCCCcEEEeCCc--ccHHHHHHHH-hCCeEEEecc-hhhHHHHHH
Q 027659           61 SKLKGKRVIELGAG--CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKR  103 (220)
Q Consensus        61 ~~~~~~~vLELGcG--~G~~~l~la~-~g~~v~~~D~-~~~l~~~~~  103 (220)
                      ....|.+||=.|+|  .|...+.+|+ .|++|+++|. ++-++.+++
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  187 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR  187 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            34578899999997  4777777775 6999999997 555666553

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=80.15  E-value=1.7  Score=35.36  Aligned_cols=79  Identities=19%  Similarity=0.213  Sum_probs=48.3

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecch-----------hhHHHHHHHHHHhhhhhccCCCCCCCCCceEE
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI-----------EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA  127 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~-----------~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~  127 (220)
                      .++|+++|=-|++.|+   ++..+++.|++|+++|..           +.++.+...+...             ..++.+
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~   90 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA-------------GGEAVA   90 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHT-------------TCEEEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhc-------------CCcEEE
Confidence            4578899999987654   233445569999999853           3444444444333             236777


Q ss_pred             EEeeeCCCCCccc-------cCCCccEEEEecC
Q 027659          128 VELDWGNEDHIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       128 ~~ldw~~~~~~~~-------~~~~fD~V~~~d~  153 (220)
                      ...|..+.+....       .-++.|+++.+--
T Consensus        91 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  123 (322)
T 3qlj_A           91 DGSNVADWDQAAGLIQTAVETFGGLDVLVNNAG  123 (322)
T ss_dssp             ECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            7777666443211       1247899988765

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=80.02  E-value=1.8  Score=33.36  Aligned_cols=77  Identities=19%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             CCCCcEEEeCCcccHHHHHHH----HhCCeEEEecch--hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMA----LLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la----~~g~~v~~~D~~--~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .+++++|=.|++. .+|..++    +.|++|+++|..  +.++.+...+...             ..++.+...|..+.+
T Consensus         5 l~~k~vlVTGasg-giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------------~~~~~~~~~D~~~~~   70 (258)
T 3afn_B            5 LKGKRVLITGSSQ-GIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD-------------GGDAAFFAADLATSE   70 (258)
T ss_dssp             GTTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT-------------TCEEEEEECCTTSHH
T ss_pred             CCCCEEEEeCCCC-hHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc-------------CCceEEEECCCCCHH
Confidence            4678899888654 4454444    458999998863  3444444444322             236778887776654


Q ss_pred             Cccc-------cCCCccEEEEecC
Q 027659          137 HIKA-------VAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~-------~~~~fD~V~~~d~  153 (220)
                      ....       ..+.+|+|+.+.-
T Consensus        71 ~~~~~~~~~~~~~g~id~vi~~Ag   94 (258)
T 3afn_B           71 ACQQLVDEFVAKFGGIDVLINNAG   94 (258)
T ss_dssp             HHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCC
Confidence            3211       1137899987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.84
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.82
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.78
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.78
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.74
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.73
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.71
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.69
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.67
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.67
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.65
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.65
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.64
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.64
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.64
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.63
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.63
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.63
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.62
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.62
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.62
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.61
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.61
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.6
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.6
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.59
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.58
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.57
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.56
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.56
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.56
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.55
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.55
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.55
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.54
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.54
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.53
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.53
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.53
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.52
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.51
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.49
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.47
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.47
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.46
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.45
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.45
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.45
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.43
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.43
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.42
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.41
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.41
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.4
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.4
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.4
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.38
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.37
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.35
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.35
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.31
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.28
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.26
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.2
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.19
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.14
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.1
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.04
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.96
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.94
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.85
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.8
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.75
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.75
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.59
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.56
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.56
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.56
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.48
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.48
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.47
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.42
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.41
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.35
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.25
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.21
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.1
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.09
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.04
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	97.99
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.98
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.93
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.91
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	97.89
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.84
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.72
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.69
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.45
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.43
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.26
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	97.17
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.14
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.92
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.76
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.65
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.27
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.02
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.94
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.94
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.92
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.9
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.87
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	95.73
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.51
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.47
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	95.45
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.37
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.32
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.14
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.82
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.59
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.51
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.47
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.25
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.11
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.98
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.96
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.7
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.67
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.6
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.54
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	93.36
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	93.26
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.14
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	93.04
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	93.02
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.98
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.83
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.8
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.72
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.71
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.7
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.68
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	92.65
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	92.61
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.57
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.56
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.07
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	91.77
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.76
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.51
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	91.47
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	91.44
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.21
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.18
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	91.05
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.0
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.74
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.5
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	90.47
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	90.41
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	90.05
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.01
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	89.98
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.85
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	89.71
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	89.62
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	89.46
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	89.45
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	89.18
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.42
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	88.03
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	87.72
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	87.56
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	86.45
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	86.14
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.92
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	85.92
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	85.89
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	85.88
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	85.71
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	85.36
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	83.5
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	83.41
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	83.31
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	82.14
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	82.03
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	81.77
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	81.56
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	80.7
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	80.21
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	80.09
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	80.07

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.84  E-value=1.7e-20  Score=144.67  Aligned_cols=146  Identities=20%  Similarity=0.244  Sum_probs=115.4

Q ss_pred             eEEEeecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEe
Q 027659           13 VINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITT   92 (220)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~   92 (220)
                      .++..+.|+++++.+.++-+..+ .++.++.+|++++.           ..++++|||+|||+|..++.+|+.+.+|+++
T Consensus        13 ~~~~~~~g~~~~~~t~~gvF~~~-~~d~~t~lLi~~l~-----------~~~~~~VLDiGcG~G~~~~~la~~~~~v~~i   80 (194)
T d1dusa_          13 IVEDILRGKKLKFKTDSGVFSYG-KVDKGTKILVENVV-----------VDKDDDILDLGCGYGVIGIALADEVKSTTMA   80 (194)
T ss_dssp             EEEEEETTEEEEEEEETTSTTTT-SCCHHHHHHHHHCC-----------CCTTCEEEEETCTTSHHHHHHGGGSSEEEEE
T ss_pred             EEEEEECCeeEEEEcCCCccCCC-CcCHHHHHHHHhCC-----------cCCCCeEEEEeecCChhHHHHHhhcccccee
Confidence            35667899999999888655444 45677888877663           3467899999999999999999999999999


Q ss_pred             cc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCC-hHHHHHHHHHh
Q 027659           93 DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHL-LEPLLQTIFAL  169 (220)
Q Consensus        93 D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~-~~~l~~~l~~~  169 (220)
                      |+ +.+++.+++|++.|+..          ..++++...|+.+.  .  .++.||+|+++++ |.... .+.+++.+.++
T Consensus        81 D~s~~~i~~a~~n~~~~~l~----------~~~i~~~~~d~~~~--~--~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~  146 (194)
T d1dusa_          81 DINRRAIKLAKENIKLNNLD----------NYDIRVVHSDLYEN--V--KDRKYNKIITNPPIRAGKEVLHRIIEEGKEL  146 (194)
T ss_dssp             ESCHHHHHHHHHHHHHTTCT----------TSCEEEEECSTTTT--C--TTSCEEEEEECCCSTTCHHHHHHHHHHHHHH
T ss_pred             eeccccchhHHHHHHHhCCc----------cceEEEEEcchhhh--h--ccCCceEEEEcccEEecchhhhhHHHHHHHh
Confidence            99 56999999999998762          24677777665432  1  3578999999999 55443 57899999999


Q ss_pred             hCCCcEEEEEEEecC
Q 027659          170 SGPKTTILLGYEIRS  184 (220)
Q Consensus       170 l~~~g~~~i~~~~r~  184 (220)
                      |+|||.+++......
T Consensus       147 LkpgG~l~i~~~~~~  161 (194)
T d1dusa_         147 LKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             EEEEEEEEEEEESTH
T ss_pred             cCcCcEEEEEEeCcC
Confidence            999999988765443

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=3.8e-20  Score=148.15  Aligned_cols=151  Identities=19%  Similarity=0.237  Sum_probs=113.7

Q ss_pred             EEEEEeCCC-CccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHH
Q 027659           22 QLQFSQDPN-SKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLP   99 (220)
Q Consensus        22 ~~~i~~~~~-~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~   99 (220)
                      .+.|.-+|+ ++++|.+  +++.++.++|.+.         ..+|++|||+|||+|.+++.+++.|++|+++|+ +++++
T Consensus        88 ~~~i~i~pg~aFGTG~H--~TT~l~l~~l~~~---------~~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~  156 (254)
T d2nxca1          88 EIPLVIEPGMAFGTGHH--ETTRLALKALARH---------LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLP  156 (254)
T ss_dssp             SEEEECCCC-----CCS--HHHHHHHHHHHHH---------CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHH
T ss_pred             ceEEEEccccccCcccc--chhhHHHHHHHhh---------cCccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHH
Confidence            466666774 4666655  8899999999875         347889999999999999999999999999999 67999


Q ss_pred             HHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          100 LLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       100 ~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      .+++|++.|+.             ++++...++.+    ....++||+|+++-.  ...+..+++.+.++|+|||.++++
T Consensus       157 ~A~~na~~n~~-------------~~~~~~~d~~~----~~~~~~fD~V~ani~--~~~l~~l~~~~~~~LkpGG~lilS  217 (254)
T d2nxca1         157 QAEANAKRNGV-------------RPRFLEGSLEA----ALPFGPFDLLVANLY--AELHAALAPRYREALVPGGRALLT  217 (254)
T ss_dssp             HHHHHHHHTTC-------------CCEEEESCHHH----HGGGCCEEEEEEECC--HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHcCC-------------ceeEEeccccc----cccccccchhhhccc--cccHHHHHHHHHHhcCCCcEEEEE
Confidence            99999999976             45666644432    123578999998855  233678889999999999999997


Q ss_pred             EEecCchHHHHHHHHHh-cCCeEEEe
Q 027659          180 YEIRSTSVHEQMLQMWK-SNFNVKLV  204 (220)
Q Consensus       180 ~~~r~~~~~~~f~~~~~-~~f~v~~v  204 (220)
                      ......  .+.+.+.++ .+|++...
T Consensus       218 gil~~~--~~~v~~~~~~~Gf~~~~~  241 (254)
T d2nxca1         218 GILKDR--APLVREAMAGAGFRPLEE  241 (254)
T ss_dssp             EEEGGG--HHHHHHHHHHTTCEEEEE
T ss_pred             ecchhh--HHHHHHHHHHCCCEEEEE
Confidence            655443  355566664 47887554

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.78  E-value=1.9e-18  Score=136.50  Aligned_cols=108  Identities=13%  Similarity=0.096  Sum_probs=92.9

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      +...|.+|||||||+|..+..+++.+++|+++|+ +++++.+++++..++.            .++.+.+.|..+   .+
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~------------~~~~~~~~d~~~---~~   77 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV------------ENVRFQQGTAES---LP   77 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC------------CSEEEEECBTTB---CC
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc------------cccccccccccc---cc
Confidence            4557899999999999999999999999999999 5699999999988875            478888866543   44


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ..+++||+|+++.+ ++..+...+++.+.++|+|||.++++...+
T Consensus        78 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~  122 (234)
T d1xxla_          78 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  122 (234)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCC
Confidence            45789999999999 777889999999999999999999876543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.78  E-value=2.5e-18  Score=135.06  Aligned_cols=108  Identities=13%  Similarity=0.090  Sum_probs=92.9

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ...++.+|||||||+|..+..+++.|++|+++|+ +++++.+++++..++.            .++++.+.|+.+.   +
T Consensus        12 ~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~------------~~i~~~~~d~~~l---~   76 (231)
T d1vl5a_          12 ALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH------------QQVEYVQGDAEQM---P   76 (231)
T ss_dssp             TCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCC-CC---C
T ss_pred             CCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccc------------ccccccccccccc---c
Confidence            3456789999999999999999999999999999 6699999999988764            5889998776553   3


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ...++||+|++..+ ++..+...+++.+.++|+|||.+++.....
T Consensus        77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  121 (231)
T d1vl5a_          77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSA  121 (231)
T ss_dssp             SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            45689999999999 888889999999999999999999876544

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=8.7e-18  Score=133.53  Aligned_cols=122  Identities=15%  Similarity=0.035  Sum_probs=101.8

Q ss_pred             cchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCC
Q 027659           39 WDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMN  116 (220)
Q Consensus        39 W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~  116 (220)
                      +|.+.-..+.|....       ....|++|||||||+|..+..+++. |++|+++|. +.+++.++++++.+++      
T Consensus        15 ~p~~~~~~~~l~~~~-------~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl------   81 (245)
T d1nkva_          15 NPFTEEKYATLGRVL-------RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV------   81 (245)
T ss_dssp             SSCCHHHHHHHHHHT-------CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTC------
T ss_pred             CCCCHHHHHHHHHHc-------CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhc------
Confidence            455666666666653       4567899999999999999998875 789999999 5699999999998876      


Q ss_pred             CCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          117 PGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       117 ~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                           ..++++...|+.+..    .+++||+|++..+ ++..+...+++.+.++|+|||.+++..+.
T Consensus        82 -----~~~v~~~~~d~~~~~----~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~  139 (245)
T d1nkva_          82 -----SERVHFIHNDAAGYV----ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY  139 (245)
T ss_dssp             -----TTTEEEEESCCTTCC----CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred             -----cccchhhhhHHhhcc----ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence                 467999997776541    3678999999999 88888999999999999999999998653

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.73  E-value=3e-17  Score=133.05  Aligned_cols=109  Identities=13%  Similarity=0.074  Sum_probs=93.4

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ...++.+|||||||+|..+..+|+. |++|+++|+ +.+++.++++....++           ..++++...|+.+   +
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl-----------~~~v~~~~~d~~~---l  129 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGL-----------ADNITVKYGSFLE---I  129 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTC-----------TTTEEEEECCTTS---C
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccc-----------ccccccccccccc---c
Confidence            4457889999999999999999875 889999999 5699999999988876           4689999977654   3


Q ss_pred             cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      +..+++||+|++..+ ++......+++.+.++|+|||.+++.....
T Consensus       130 ~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~  175 (282)
T d2o57a1         130 PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  175 (282)
T ss_dssp             SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            445689999999999 888889999999999999999999986544

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.71  E-value=4.8e-17  Score=126.78  Aligned_cols=103  Identities=17%  Similarity=0.246  Sum_probs=83.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||||||+|..+..+++.|++|+++|. ++|++.+++++...+.             ++.+...|..   .++...
T Consensus        37 ~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~-------------~~~~~~~d~~---~l~~~~  100 (226)
T d1ve3a1          37 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRES-------------NVEFIVGDAR---KLSFED  100 (226)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEECCTT---SCCSCT
T ss_pred             CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccc-------------cccccccccc---cccccC
Confidence            5579999999999999999999999999999 5699999988776543             4566664443   344456


Q ss_pred             CCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          143 PPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ++||+|++..+ .+.  .....+++.+.++|+|||.+++....
T Consensus       101 ~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         101 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             cCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            89999999999 543  35778999999999999999887654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=1.1e-16  Score=122.24  Aligned_cols=106  Identities=17%  Similarity=0.146  Sum_probs=87.2

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ...+|.+|||+|||+|..++.+|+.+++|+++|. +++++.+++|++.+++           ..++++...|..   ...
T Consensus        30 ~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl-----------~~~v~~~~gda~---~~~   95 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL-----------GDNVTLMEGDAP---EAL   95 (186)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-----------CTTEEEEESCHH---HHH
T ss_pred             CCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCC-----------CcceEEEECchh---hcc
Confidence            3458899999999999999999998889999999 6799999999999987           468998885543   222


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      .....||+|++...  ......+++.+.++|+|+|.+++....
T Consensus        96 ~~~~~~D~v~~~~~--~~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          96 CKIPDIDIAVVGGS--GGELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             TTSCCEEEEEESCC--TTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             cccCCcCEEEEeCc--cccchHHHHHHHHHhCcCCEEEEEeec
Confidence            34578999998877  233678999999999999998876544

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.67  E-value=2.7e-16  Score=120.88  Aligned_cols=104  Identities=19%  Similarity=0.242  Sum_probs=85.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++.+|||||||+|..++.+++.|.+|+++|+ +++++.+++++...+.            .++.+...|.....    .
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~------------~~~~~~~~d~~~~~----~   92 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL------------DNLQTDLVDLNTLT----F   92 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC------------TTEEEEECCTTTCC----C
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc------------cchhhhheeccccc----c
Confidence            35569999999999999999999999999999 5699999999887665            46777776654432    3


Q ss_pred             CCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +++||+|++..+ ++  ......+++.+.++|+|||.+++....
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~  136 (198)
T d2i6ga1          93 DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM  136 (198)
T ss_dssp             CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            578999999999 44  345678999999999999999887543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.67  E-value=1.6e-16  Score=125.95  Aligned_cols=102  Identities=19%  Similarity=0.215  Sum_probs=82.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++++|||||||+|..++.+++.|++|+++|. ++|++.+++++..++.             ++.+.+.|+.+.   + .
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~-------------~i~~~~~d~~~l---~-~  102 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL-------------KIEFLQGDVLEI---A-F  102 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-------------CCEEEESCGGGC---C-C
T ss_pred             CCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc-------------cchheehhhhhc---c-c
Confidence            35678999999999999999999999999999 5699999999887653             688888766554   2 2


Q ss_pred             CCCccEEEEec-C-CCC--CChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          142 APPFDYIIGTD-V-YAE--HLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       142 ~~~fD~V~~~d-~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +++||+|++.. + ++.  +....+++.+.++|+|||.+++...
T Consensus       103 ~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~~  146 (251)
T d1wzna1         103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFP  146 (251)
T ss_dssp             CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence            46899999864 4 332  3466889999999999999988653

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=6e-16  Score=124.52  Aligned_cols=133  Identities=17%  Similarity=0.292  Sum_probs=97.1

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      -+..|.++.....        ..++.+|||||||+|.+++.+|...  ++|+++|+ +++++.+++|+..++.       
T Consensus        93 eTE~lv~~~l~~~--------~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-------  157 (274)
T d2b3ta1          93 DTECLVEQALARL--------PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-------  157 (274)
T ss_dssp             THHHHHHHHHHHS--------CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-------
T ss_pred             chhhhhhhHhhhh--------cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-------
Confidence            3666777666542        2356789999999999999999764  57999999 6699999999999876       


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCC-C-------------------------ChHHHHHHHHHhhC
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAE-H-------------------------LLEPLLQTIFALSG  171 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~-~-------------------------~~~~l~~~l~~~l~  171 (220)
                           .++.+...||.+..    ...+||+|++|++|-+ .                         .+..++....++|+
T Consensus       158 -----~~v~~~~~d~~~~~----~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~  228 (274)
T d2b3ta1         158 -----KNIHILQSDWFSAL----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALV  228 (274)
T ss_dssp             -----CSEEEECCSTTGGG----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEE
T ss_pred             -----ccceeeeccccccc----CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcC
Confidence                 46999998876532    3468999999999432 1                         13457777788899


Q ss_pred             CCcEEEEEEEecCchHHHHHHHHHh-cCCe
Q 027659          172 PKTTILLGYEIRSTSVHEQMLQMWK-SNFN  200 (220)
Q Consensus       172 ~~g~~~i~~~~r~~~~~~~f~~~~~-~~f~  200 (220)
                      |+|.+++-+.....   +...+.++ .+|.
T Consensus       229 ~~G~l~lEig~~q~---~~v~~~l~~~gf~  255 (274)
T d2b3ta1         229 SGGFLLLEHGWQQG---EAVRQAFILAGYH  255 (274)
T ss_dssp             EEEEEEEECCSSCH---HHHHHHHHHTTCT
T ss_pred             CCCEEEEEECchHH---HHHHHHHHHCCCC
Confidence            99999986544333   33334443 3664

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.65  E-value=4.9e-17  Score=120.31  Aligned_cols=109  Identities=15%  Similarity=0.260  Sum_probs=88.7

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..++|++|||||||+|.+|+.++.+|+ +|+++|. +++++.+++|++.++.           ..++++...|+...  +
T Consensus        11 ~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~-----------~~~~~ii~~D~~~~--l   77 (152)
T d2esra1          11 PYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKA-----------ENRFTLLKMEAERA--I   77 (152)
T ss_dssp             SCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTC-----------GGGEEEECSCHHHH--H
T ss_pred             hhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhccc-----------ccchhhhccccccc--c
Confidence            346899999999999999999999998 5999998 6799999999999876           45788888766443  2


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHH--hhCCCcEEEEEEEe
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFA--LSGPKTTILLGYEI  182 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~--~l~~~g~~~i~~~~  182 (220)
                      ....++||+|++.|||........+..+..  +|+|+|.+++.+..
T Consensus        78 ~~~~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          78 DCLTGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             HHBCSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             cccccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            234678999999766887778888888765  48999999886543

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.64  E-value=1.8e-16  Score=124.38  Aligned_cols=103  Identities=14%  Similarity=0.099  Sum_probs=84.2

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++++|||||||+|..+..+++.|.+|+++|. +++++.++.+..                .++.+...++.+..    
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~----------------~~~~~~~~~~~~~~----   77 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK----------------DGITYIHSRFEDAQ----   77 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC----------------SCEEEEESCGGGCC----
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc----------------cccccccccccccc----
Confidence            347789999999999999999999999999999 569988876522                35777775554432    


Q ss_pred             cCCCccEEEEecC-CCCCChHHHHHHHH-HhhCCCcEEEEEEEecC
Q 027659          141 VAPPFDYIIGTDV-YAEHLLEPLLQTIF-ALSGPKTTILLGYEIRS  184 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~~~~l~~~l~-~~l~~~g~~~i~~~~r~  184 (220)
                      .+++||+|++.++ ++.++...+++.+. ++|+|||.+++..+.+.
T Consensus        78 ~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~  123 (225)
T d2p7ia1          78 LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNAN  123 (225)
T ss_dssp             CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred             cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEeCCcc
Confidence            3578999999999 88888899999887 78999999999987543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.3e-16  Score=120.85  Aligned_cols=130  Identities=14%  Similarity=0.014  Sum_probs=98.0

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ...+.+|||||||+|..+..++.. +.+|+++|+ ++|++.+++++..++.            .++++.+.|..+.   +
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~------------~~~~f~~~d~~~~---~  122 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK------------RVRNYFCCGLQDF---T  122 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG------------GEEEEEECCGGGC---C
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc------------ccccccccccccc---c
Confidence            345678999999999999987755 457999999 6699999998877654            4678888665443   3


Q ss_pred             ccCCCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEEEEecCch------------HHHHHHHHHhc-CCeEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLGYEIRSTS------------VHEQMLQMWKS-NFNVKL  203 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~~~~r~~~------------~~~~f~~~~~~-~f~v~~  203 (220)
                      ...++||+|++..+ ++...  ...+++.+.++|+|+|.+++........            ..+.+.+.+++ +|++..
T Consensus       123 ~~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aGf~ii~  202 (222)
T d2ex4a1         123 PEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLA  202 (222)
T ss_dssp             CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEETTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred             cccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccccccCCceeeCCHHHHHHHHHHcCCEEEE
Confidence            34679999999999 55443  4579999999999999999986543321            24567777754 898866


Q ss_pred             eeC
Q 027659          204 VPK  206 (220)
Q Consensus       204 v~~  206 (220)
                      ...
T Consensus       203 ~~~  205 (222)
T d2ex4a1         203 EER  205 (222)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=2e-16  Score=124.73  Aligned_cols=99  Identities=18%  Similarity=0.225  Sum_probs=79.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+.+|||+|||+|..+..+++.|++|+++|. ++|++.++++...                  .+..   ++...++..+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~------------------~~~~---~~~~~l~~~~  100 (246)
T d2avna1          42 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK------------------NVVE---AKAEDLPFPS  100 (246)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS------------------CEEE---CCTTSCCSCT
T ss_pred             CCCEEEEECCCCchhcccccccceEEEEeeccccccccccccccc------------------cccc---cccccccccc
Confidence            6679999999999999999999999999999 5699988765211                  1223   2334455557


Q ss_pred             CCccEEEEe-cC-CCCCChHHHHHHHHHhhCCCcEEEEEEEec
Q 027659          143 PPFDYIIGT-DV-YAEHLLEPLLQTIFALSGPKTTILLGYEIR  183 (220)
Q Consensus       143 ~~fD~V~~~-d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r  183 (220)
                      ++||+|++. ++ ++..+...+++.+.++|+|||.+++..+..
T Consensus       101 ~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         101 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             ccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEECCH
Confidence            899999985 56 667788999999999999999999987653

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.63  E-value=8.1e-16  Score=117.96  Aligned_cols=122  Identities=19%  Similarity=0.256  Sum_probs=74.3

Q ss_pred             CeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhh
Q 027659           20 GHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEV   97 (220)
Q Consensus        20 ~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~   97 (220)
                      ..++.++|+++....+     +..+...++.          .+++|++|||||||+|.+++.++.+|+ +|+++|+ +++
T Consensus        19 ~~~~~leQy~T~~~~a-----~~~~~~~~~~----------~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a   83 (197)
T d1ne2a_          19 NFKNYLEQYPTDASTA-----AYFLIEIYND----------GNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDA   83 (197)
T ss_dssp             --------CCCCHHHH-----HHHHHHHHHH----------TSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHH
T ss_pred             CCCcccccCCCCHHHH-----HHHHHHHHHc----------CCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHH
Confidence            4557788887544432     1122222222          567899999999999999999999987 5999999 669


Q ss_pred             HHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC--h-HHHHHHHHHhhCCCc
Q 027659           98 LPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL--L-EPLLQTIFALSGPKT  174 (220)
Q Consensus        98 l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~--~-~~l~~~l~~~l~~~g  174 (220)
                      ++.+++|+.                 ++.+...|+.+      .+++||+|++|++|....  . ..+++   ..+..+.
T Consensus        84 ~~~ar~N~~-----------------~~~~~~~D~~~------l~~~fD~Vi~NPPfg~~~~~~D~~fl~---~a~~~~~  137 (197)
T d1ne2a_          84 IETAKRNCG-----------------GVNFMVADVSE------ISGKYDTWIMNPPFGSVVKHSDRAFID---KAFETSM  137 (197)
T ss_dssp             HHHHHHHCT-----------------TSEEEECCGGG------CCCCEEEEEECCCC-------CHHHHH---HHHHHEE
T ss_pred             HHHHHHccc-----------------cccEEEEehhh------cCCcceEEEeCcccchhhhhchHHHHH---HHHhcCC
Confidence            999888743                 45777755543      357899999998864221  1 23333   3344456


Q ss_pred             EEEEEEEe
Q 027659          175 TILLGYEI  182 (220)
Q Consensus       175 ~~~i~~~~  182 (220)
                      .+|..+..
T Consensus       138 ~iy~ih~~  145 (197)
T d1ne2a_         138 WIYSIGNA  145 (197)
T ss_dssp             EEEEEEEG
T ss_pred             eEEEehhh
Confidence            66655543

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.63  E-value=2.7e-16  Score=124.66  Aligned_cols=101  Identities=16%  Similarity=0.120  Sum_probs=82.2

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .++++|||||||+|..++.++++|.+|+++|. ++|++.|++++..++.             ++++.+.|+.+..    .
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~-------------~v~~~~~d~~~~~----~   98 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL-------------KPRLACQDISNLN----I   98 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC-------------CCEEECCCGGGCC----C
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc-------------cceeeccchhhhc----c
Confidence            46679999999999999999999999999999 5699999998877653             6888887776543    2


Q ss_pred             CCCccEEEEe-cC--CC--CCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          142 APPFDYIIGT-DV--YA--EHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       142 ~~~fD~V~~~-d~--y~--~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .++||+|++. .+  |.  ......+++.+.++|+|||.+++..
T Consensus        99 ~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~~  142 (246)
T d1y8ca_          99 NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI  142 (246)
T ss_dssp             SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence            5689999985 33  32  3456778999999999999988754

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.63  E-value=2.8e-16  Score=119.73  Aligned_cols=145  Identities=14%  Similarity=-0.033  Sum_probs=97.3

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ...+|.+|||+|||+|..++.+|+.|.+|+++|+ ++|++.+++++...........-.......+.+...|+.+...  
T Consensus        17 ~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~--   94 (201)
T d1pjza_          17 NVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA--   94 (201)
T ss_dssp             CCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH--
T ss_pred             CCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccccc--
Confidence            3458899999999999999999999999999999 5699999888754322110000000012345666655544321  


Q ss_pred             ccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEecCch---------HHHHHHHHHhcCCeEEEeeCC
Q 027659          140 AVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEIRSTS---------VHEQMLQMWKSNFNVKLVPKA  207 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~---------~~~~f~~~~~~~f~v~~v~~~  207 (220)
                      .....||+|+++.+ .+.  +....+++.+.++|+|||.+++....+...         ..+.+.+.+...|+++.+...
T Consensus        95 ~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p~~~~~~~el~~l~~~~~~i~~~~~~  174 (201)
T d1pjza_          95 RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQ  174 (201)
T ss_dssp             HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSCCCCCCHHHHHHTSCSSEEEEEEEES
T ss_pred             ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCccccCCHHHHHHHhCCCcEEEEEEEe
Confidence            22458999999988 433  346789999999999999988876544331         123344445667887766544

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.6e-15  Score=119.16  Aligned_cols=157  Identities=17%  Similarity=0.075  Sum_probs=108.2

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccC-CC-
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQM-NP-  117 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~-~~-  117 (220)
                      ....|.+++.+..       ....+.+|||+|||+|..++.+|+.|.+|+++|+ +++++.++++........... .. 
T Consensus        29 ~~~~l~~~~~~~l-------~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~  101 (229)
T d2bzga1          29 GHQLLKKHLDTFL-------KGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPG  101 (229)
T ss_dssp             CCHHHHHHHHHHH-------TTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTT
T ss_pred             CCHHHHHHHHHhc-------CCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccc
Confidence            3667778876653       3447789999999999999999999999999999 569988877655432110000 00 


Q ss_pred             ---CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-C--CCCChHHHHHHHHHhhCCCcEEEEEEEecCch-----
Q 027659          118 ---GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-Y--AEHLLEPLLQTIFALSGPKTTILLGYEIRSTS-----  186 (220)
Q Consensus       118 ---~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y--~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~-----  186 (220)
                         ......++.+.+.|+.+..  +.....||+|+...+ +  .++..+..++.+.++|+|||.+++....+...     
T Consensus       102 ~~~~~~~~~~v~~~~~d~~~l~--~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gp  179 (229)
T d2bzga1         102 TKVFKSSSGNISLYCCSIFDLP--RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGP  179 (229)
T ss_dssp             CEEEEETTSSEEEEESCGGGGG--GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCS
T ss_pred             cceeeecCCcEEEEEcchhhcc--ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCC
Confidence               0012356777775554332  224578999999888 3  34667899999999999999988877654321     


Q ss_pred             ----HHHHHHHHHhcCCeEEEeeC
Q 027659          187 ----VHEQMLQMWKSNFNVKLVPK  206 (220)
Q Consensus       187 ----~~~~f~~~~~~~f~v~~v~~  206 (220)
                          ....+.+.+...|.++.+..
T Consensus       180 p~~~~~~el~~lf~~~~~i~~le~  203 (229)
T d2bzga1         180 PFYVPHAEIERLFGKICNIRCLEK  203 (229)
T ss_dssp             SCCCCHHHHHHHHTTTEEEEEEEE
T ss_pred             CCCCCHHHHHHHhcCCCEEEEEEE
Confidence                13445566677888876643

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=9.1e-16  Score=126.29  Aligned_cols=102  Identities=20%  Similarity=0.228  Sum_probs=84.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .++|++|||||||+|++++.+|+.|+ +|+++|.+++...++++++.|+.           ..+|.+...+..+   ++.
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~-----------~~~v~~~~~~~~~---~~~   96 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKL-----------DHVVTIIKGKVEE---VEL   96 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTC-----------TTTEEEEESCTTT---CCC
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCC-----------ccccceEeccHHH---ccc
Confidence            45889999999999999999999997 59999997767888888988887           5678888855443   344


Q ss_pred             cCCCccEEEEecC----CCCCChHHHHHHHHHhhCCCcEEE
Q 027659          141 VAPPFDYIIGTDV----YAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       141 ~~~~fD~V~~~d~----y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      ..++||+|++..+    ++...++.++..+.++|+|||.++
T Consensus        97 ~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          97 PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            4678999998766    345678999999999999999876

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.62  E-value=9.9e-16  Score=124.06  Aligned_cols=104  Identities=16%  Similarity=0.135  Sum_probs=86.0

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++.+|||+|||+|..++.++..   +++|+++|. +++++.+++++...+.             ++++...|..+.  
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-------------~~~f~~~d~~~~--   89 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-------------DSEFLEGDATEI--   89 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-------------EEEEEESCTTTC--
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-------------cccccccccccc--
Confidence            446789999999999999999974   568999999 5699999999876543             678887665443  


Q ss_pred             ccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          138 IKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       + .+++||+|+++.+ ++..+...+++.+.++|+|||.+++..+.
T Consensus        90 -~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~  133 (281)
T d2gh1a1          90 -E-LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  133 (281)
T ss_dssp             -C-CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -c-ccCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence             2 2457999999999 88888999999999999999999887653

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.4e-15  Score=125.69  Aligned_cols=102  Identities=23%  Similarity=0.253  Sum_probs=85.1

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..+|++|||||||+|++++.+|+.|+ +|+++|.++++..+++++..|+.           ..++.+...+..   .++.
T Consensus        36 ~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~-----------~~~i~~i~~~~~---~l~~  101 (328)
T d1g6q1_          36 LFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGF-----------SDKITLLRGKLE---DVHL  101 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCTT---TSCC
T ss_pred             cCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCc-----------cccceEEEeehh---hccC
Confidence            45889999999999999999999998 59999998888899999998886           568888885543   3444


Q ss_pred             cCCCccEEEEecC----CCCCChHHHHHHHHHhhCCCcEEE
Q 027659          141 VAPPFDYIIGTDV----YAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       141 ~~~~fD~V~~~d~----y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      +.++||+|++..+    .+....+.++..+.++|+|||.++
T Consensus       102 ~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         102 PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             cccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            5679999999776    345678889999999999999875

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=4.2e-15  Score=122.29  Aligned_cols=175  Identities=12%  Similarity=0.102  Sum_probs=115.1

Q ss_pred             eEEEeecCeEEEEEeCCCCccccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEe
Q 027659           13 VINLEVLGHQLQFSQDPNSKHLGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITT   92 (220)
Q Consensus        13 ~~~~~~~~~~~~i~~~~~~~~~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~   92 (220)
                      .+.+...|.++.+.-.. +..+|..+-.-.   .+.+..          ..+|++|||++||+|..++.+|..+++|+++
T Consensus       108 ~~~v~E~G~~f~v~l~~-~~~tG~flDqr~---~r~~~~----------~~~g~rVLDl~~gtG~~s~~~a~g~~~V~~v  173 (318)
T d1wxxa2         108 RVQVQEGRVRYLVDLRA-GQKTGAYLDQRE---NRLYME----------RFRGERALDVFSYAGGFALHLALGFREVVAV  173 (318)
T ss_dssp             EEEEEETTEEEEEECST-TSCCCCCGGGHH---HHHHGG----------GCCEEEEEEETCTTTHHHHHHHHHEEEEEEE
T ss_pred             eEEEEECCEEEEEechh-ccccccchhhhh---hHHHHH----------HhCCCeeeccCCCCcHHHHHHHhcCCcEEee
Confidence            35556666666654322 455565433211   122222          2378999999999999999998777789999


Q ss_pred             cc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-CccccCCCccEEEEecC-CCCC--C-------hH
Q 027659           93 DQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDV-YAEH--L-------LE  160 (220)
Q Consensus        93 D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~~~~~~fD~V~~~d~-y~~~--~-------~~  160 (220)
                      |. +.+++.+++|++.|++            .++++...|..+.. ......++||+|++.++ +...  .       +.
T Consensus       174 D~s~~al~~a~~n~~~ngl------------~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~  241 (318)
T d1wxxa2         174 DSSAEALRRAEENARLNGL------------GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYK  241 (318)
T ss_dssp             ESCHHHHHHHHHHHHHTTC------------TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCC------------CCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHH
Confidence            99 5699999999999986            46888876654321 12234578999999998 5432  2       34


Q ss_pred             HHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh-----cCCeEEEeeCCCCCcccC
Q 027659          161 PLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK-----SNFNVKLVPKAKESTMWG  214 (220)
Q Consensus       161 ~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~-----~~f~v~~v~~~~~~~~~~  214 (220)
                      .++....++|+|||.++++.....-. .+.|.+.+.     .+-+++.+.....+.+|.
T Consensus       242 ~l~~~a~~lLkpGG~Lv~~scs~~~~-~~~f~~~v~~a~~~a~~~~~~~~~~~~~~DhP  299 (318)
T d1wxxa2         242 EVNLRAIKLLKEGGILATASCSHHMT-EPLFYAMVAEAAQDAHRLLRVVEKRGQPFDHP  299 (318)
T ss_dssp             HHHHHHHHTEEEEEEEEEEECCTTSC-HHHHHHHHHHHHHHTTCCEEEEEEECCCTTSC
T ss_pred             HHHHHHHHHcCCCCEEEEEeCCcccC-HHHHHHHHHHHHHHcCCCEEEEEecCCCCCCC
Confidence            67778888899999988877654432 344544332     244555555544455553

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.60  E-value=3.2e-15  Score=116.93  Aligned_cols=105  Identities=15%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh----CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++.+|||||||+|..+..+++.    +++|+++|. ++|++.++++++....           ..++.+...|..+   .
T Consensus        39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~-----------~~~~~~~~~d~~~---~  104 (225)
T d1im8a_          39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----------EIPVEILCNDIRH---V  104 (225)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCC-----------SSCEEEECSCTTT---C
T ss_pred             CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcc-----------cchhhhccchhhc---c
Confidence            5679999999999999999963    678999999 6699999999886543           3455655533322   2


Q ss_pred             cccCCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          139 KAVAPPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                        ....+|+|+++.+ ++  .+....+++.+.+.|+|||.+++....+.
T Consensus       105 --~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~  151 (225)
T d1im8a_         105 --EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF  151 (225)
T ss_dssp             --CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             --ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccc
Confidence              3568999999988 43  35788999999999999999999876554

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.6e-15  Score=122.29  Aligned_cols=103  Identities=21%  Similarity=0.276  Sum_probs=80.9

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ...+|++|||||||+|++++.+|+.|+ +|+++|.++....+++++..|+.           ..++.+...+.   .++.
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~-----------~~~i~~~~~~~---~~l~   97 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKL-----------EDTITLIKGKI---EEVH   97 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTC-----------TTTEEEEESCT---TTSC
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCC-----------CccceEEEeeH---HHhc
Confidence            456899999999999999999999997 59999996644556777777765           46888888444   4344


Q ss_pred             ccCCCccEEEEecC-C---CCCChHHHHHHHHHhhCCCcEEE
Q 027659          140 AVAPPFDYIIGTDV-Y---AEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y---~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      ...++||+|++..+ +   ....++.++....++|+|||.++
T Consensus        98 ~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          98 LPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             CccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            45679999999766 3   33457788888899999999876

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=8.4e-16  Score=115.69  Aligned_cols=107  Identities=21%  Similarity=0.168  Sum_probs=78.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~~  140 (220)
                      .+|.+|||+|||+|..|+.++..|++|+++|. +++++.+++|++.|+.           ..++  ...+..... ....
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~-----------~~~v--~~~~~d~~~~~~~~  106 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL-----------GARV--VALPVEVFLPEAKA  106 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC-----------CCEE--ECSCHHHHHHHHHH
T ss_pred             cCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhcc-----------ccce--eeeehhcccccccc
Confidence            47889999999999999999999999999998 6799999999999876           2233  332211110 1122


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHH-HhhCCCcEEEEEEEe
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIF-ALSGPKTTILLGYEI  182 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~-~~l~~~g~~~i~~~~  182 (220)
                      ...+||+|++.|||.....+.+...+. .+|+|+|.+++.++.
T Consensus       107 ~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         107 QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             cCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEEecC
Confidence            356899999977787665555554443 368999988876653

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.58  E-value=1.6e-14  Score=116.82  Aligned_cols=116  Identities=14%  Similarity=0.139  Sum_probs=90.4

Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCC
Q 027659           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSD  120 (220)
Q Consensus        43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~  120 (220)
                      ....+.+.+.+       ...+|.+|||||||+|.+++.+++. |++|+++|+ ++.++.+++.++..++          
T Consensus        38 ~~k~~~~~~~l-------~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l----------  100 (280)
T d2fk8a1          38 YAKVDLNLDKL-------DLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDT----------  100 (280)
T ss_dssp             HHHHHHHHTTS-------CCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCC----------
T ss_pred             HHHHHHHHHHc-------CCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhcc----------
Confidence            34445555553       4557899999999999999998865 899999999 5699999998887765          


Q ss_pred             CCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          121 LLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       121 ~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                       ..++.+...|+.+      .+++||.|++..+ .+.  ..++.+++.+.++|+|||.+++-...
T Consensus       101 -~~~~~~~~~d~~~------~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         101 -NRSRQVLLQGWED------FAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             -SSCEEEEESCGGG------CCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             -ccchhhhhhhhhh------hccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence             3466666644432      3578999999999 544  45789999999999999999986543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.57  E-value=1.1e-14  Score=115.97  Aligned_cols=102  Identities=17%  Similarity=0.117  Sum_probs=83.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..++|||||||+|..++.+++..  .+++++|.+++++.+++++...+.           ..++++...|..+.     .
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~-----------~~rv~~~~~D~~~~-----~  143 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGL-----------SDRVDVVEGDFFEP-----L  143 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC-----C
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhc-----------ccchhhccccchhh-----c
Confidence            45789999999999999999874  578899998899999999988765           46899998765432     2


Q ss_pred             CCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          142 APPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +.+||+|+++.+ ++.  +....+++.+.++|+|||.++|...
T Consensus       144 ~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~  186 (253)
T d1tw3a2         144 PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHER  186 (253)
T ss_dssp             SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEec
Confidence            457999999999 543  3346889999999999999999764

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.56  E-value=3.2e-14  Score=110.20  Aligned_cols=150  Identities=17%  Similarity=0.165  Sum_probs=100.9

Q ss_pred             cccccchHH-HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhh
Q 027659           35 GTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTS  110 (220)
Q Consensus        35 g~~~W~~s~-~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~  110 (220)
                      +.+.|+.-. -|+..+.....     -...+|.+|||||||+|..+..+|+..  .+|+++|+ +++++.++++++..  
T Consensus        31 ~~r~w~p~rsklaa~i~~g~~-----l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~--  103 (209)
T d1nt2a_          31 GYREWVPWRSKLAAMILKGHR-----LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--  103 (209)
T ss_dssp             TEEECCGGGCHHHHHHHTSCC-----CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--
T ss_pred             ceeeeCCcchHHHHHHhcccc-----CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--
Confidence            446776432 44555543211     144578999999999999999999753  47999999 67999999887653  


Q ss_pred             hhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCch----
Q 027659          111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS----  186 (220)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~----  186 (220)
                                  .++.+...+.............+|+|+ +++++......+++.+.++|+|||.++++...+..+    
T Consensus       104 ------------~ni~~i~~d~~~~~~~~~~~~~vd~v~-~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~d~~~~  170 (209)
T d1nt2a_         104 ------------NNIIPLLFDASKPWKYSGIVEKVDLIY-QDIAQKNQIEILKANAEFFLKEKGEVVIMVKARSIDSTAE  170 (209)
T ss_dssp             ------------SSEEEECSCTTCGGGTTTTCCCEEEEE-ECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCTTSC
T ss_pred             ------------CCceEEEeeccCccccccccceEEEEE-ecccChhhHHHHHHHHHHHhccCCeEEEEEEccccCCCCC
Confidence                        367777765544333222233455554 345555667889999999999999999988654432    


Q ss_pred             ---HHHHHHHHHhcCCeEEEe
Q 027659          187 ---VHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       187 ---~~~~f~~~~~~~f~v~~v  204 (220)
                         +++...+.++.+|++.+.
T Consensus       171 ~~~~~~~~~~~l~~gf~i~E~  191 (209)
T d1nt2a_         171 PEEVFKSVLKEMEGDFKIVKH  191 (209)
T ss_dssp             HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEEE
Confidence               233334445678988553

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=1.8e-14  Score=111.04  Aligned_cols=123  Identities=19%  Similarity=0.242  Sum_probs=81.3

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      .+++|++|||+|||+|.+++.++..|+ +|+++|+ +++++.+++|++.++.             +..+...|...    
T Consensus        43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-------------~~~~~~~d~~~----  105 (201)
T d1wy7a1          43 GDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-------------KFKVFIGDVSE----  105 (201)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-------------SEEEEESCGGG----
T ss_pred             CCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-------------CceEEECchhh----
Confidence            567899999999999999999999987 6999999 6699999999887754             56666644322    


Q ss_pred             cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH--hcCCeEEEe
Q 027659          139 KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW--KSNFNVKLV  204 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~--~~~f~v~~v  204 (220)
                        ...+||+|+++++|.......-...+...+.+++.++..+.....  ...+++.+  ..++.++..
T Consensus       106 --~~~~fD~Vi~nPP~~~~~~~~d~~~l~~~~~~~~~v~~ih~~~~~--~~~~i~~~~~~~g~~i~~~  169 (201)
T d1wy7a1         106 --FNSRVDIVIMNPPFGSQRKHADRPFLLKAFEISDVVYSIHLAKPE--VRRFIEKFSWEHGFVVTHR  169 (201)
T ss_dssp             --CCCCCSEEEECCCCSSSSTTTTHHHHHHHHHHCSEEEEEEECCHH--HHHHHHHHHHHTTEEEEEE
T ss_pred             --hCCcCcEEEEcCccccccccccHHHHHHHHhhcccchhcccchHH--HHHHHHHHHhhcCceEEEE
Confidence              357899999999854322111112233334455666665543322  23444443  235555443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.56  E-value=4.1e-15  Score=118.37  Aligned_cols=106  Identities=14%  Similarity=0.035  Sum_probs=83.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ++++|||||||+|.....+++.+. +|+|+|. ++|++.|++....++.           ..++.+...|.....  ...
T Consensus        24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~-----------~~~v~f~~~D~~~~~--~~~   90 (252)
T d1ri5a_          24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKR-----------RFKVFFRAQDSYGRH--MDL   90 (252)
T ss_dssp             TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCC-----------SSEEEEEESCTTTSC--CCC
T ss_pred             CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCC-----------CcceEEEEcchhhhc--ccc
Confidence            678999999999999899998876 6999999 5699999988776543           357888886653321  113


Q ss_pred             CCCccEEEEecC-CC-C---CChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YA-E---HLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~-~---~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      .++||+|++..+ ++ .   .....+++.+.++|+|||.+++..+.
T Consensus        91 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~  136 (252)
T d1ri5a_          91 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS  136 (252)
T ss_dssp             SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             cccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecC
Confidence            568999999988 43 2   34568899999999999999987764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=5.9e-14  Score=113.85  Aligned_cols=117  Identities=15%  Similarity=0.114  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHH-HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      -....+++.+..       ...+|.+|||||||.|.+++.+| +.|++|+++++ ++.++.+++.+...++         
T Consensus        46 q~~k~~~~~~~l-------~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l---------  109 (291)
T d1kpia_          46 QYAKRKLALDKL-------NLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDS---------  109 (291)
T ss_dssp             HHHHHHHHHHTT-------CCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCC---------
T ss_pred             HHHHHHHHHHhc-------CCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhcc---------
Confidence            445556666653       56689999999999999999887 46999999999 5688899888887766         


Q ss_pred             CCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCC---------CChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAE---------HLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       120 ~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~---------~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                        ..++.+...|+.      ..+++||.|++-.+ -+.         ..++.+++.+.++|+|||.+++..-.
T Consensus       110 --~~~v~~~~~d~~------~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~  174 (291)
T d1kpia_         110 --PRRKEVRIQGWE------EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  174 (291)
T ss_dssp             --SSCEEEEECCGG------GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEE
T ss_pred             --chhhhhhhhccc------ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence              456777665542      23678999999999 443         23789999999999999999986543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.55  E-value=5.6e-14  Score=114.36  Aligned_cols=149  Identities=17%  Similarity=0.099  Sum_probs=102.3

Q ss_pred             ceEEEeecCeEEEEEeCCCCcccccccc--chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeE
Q 027659           12 SVINLEVLGHQLQFSQDPNSKHLGTTVW--DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNV   89 (220)
Q Consensus        12 ~~~~~~~~~~~~~i~~~~~~~~~g~~~W--~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v   89 (220)
                      ....+...|.++.+.-.. +..+|...-  +.-..+.+++..          ..++++||||+||+|..|+.+|..|++|
T Consensus        89 ~~~~v~e~gl~f~v~~~~-~~~tG~f~dqr~nr~~~~~~~~~----------~~~~~rVLdlf~~tG~~sl~aa~~GA~V  157 (309)
T d2igta1          89 ETWPLSLLGVEFLGRFTA-FRHVGVFPEQIVHWEWLKNAVET----------ADRPLKVLNLFGYTGVASLVAAAAGAEV  157 (309)
T ss_dssp             SEEEEEETTEEEEEECCS-SSCCSCCGGGHHHHHHHHHHHHH----------SSSCCEEEEETCTTCHHHHHHHHTTCEE
T ss_pred             CeEEEEEeEEEEEEeccC-CCccccccchhHHHHHHHHHHhh----------ccCCCeEEEecCCCcHHHHHHHhCCCeE
Confidence            345566667666665433 455664311  112223334432          2368899999999999999999999999


Q ss_pred             EEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-ccccCCCccEEEEecC-CCC----------
Q 027659           90 ITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-IKAVAPPFDYIIGTDV-YAE----------  156 (220)
Q Consensus        90 ~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~~~~~~~fD~V~~~d~-y~~----------  156 (220)
                      +++|. ..+++.+++|++.|+..          ..++++.+.|..+.-. ......+||+||+.++ |..          
T Consensus       158 ~~VD~s~~al~~a~~N~~ln~~~----------~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~  227 (309)
T d2igta1         158 THVDASKKAIGWAKENQVLAGLE----------QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLF  227 (309)
T ss_dssp             EEECSCHHHHHHHHHHHHHHTCT----------TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHH
T ss_pred             EEEeChHHHHHHHHHhhhhhccc----------CCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHH
Confidence            99999 56999999999999872          2368888755432211 1123578999999998 632          


Q ss_pred             CChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          157 HLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       157 ~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      .++..++..+.++|+|+|.++++..
T Consensus       228 ~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         228 DHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             HHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEec
Confidence            1356678888899999987665543

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.55  E-value=5.2e-14  Score=113.89  Aligned_cols=118  Identities=14%  Similarity=0.169  Sum_probs=94.6

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNP  117 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~  117 (220)
                      .+-..+.+++.+.+       ...+|.+|||||||.|.+++.+|+ .|++|+++++ ++.++.+++.+...++       
T Consensus        45 eAQ~~k~~~~~~~l-------~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~-------  110 (285)
T d1kpga_          45 EAQIAKIDLALGKL-------GLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSEN-------  110 (285)
T ss_dssp             HHHHHHHHHHHTTT-------TCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCC-------
T ss_pred             HHHHHHHHHHHHHc-------CCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhh-------
Confidence            34455667777664       556899999999999999998774 6999999998 5689999988887765       


Q ss_pred             CCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          118 GSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       118 ~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                          ..++++...|+.+.      +++||.|++-.+ .+.  .....+++.+.++|+|||.+++..-
T Consensus       111 ----~~~v~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         111 ----LRSKRVLLAGWEQF------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             ----CSCEEEEESCGGGC------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ----hhhhHHHHhhhhcc------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEE
Confidence                46888888776443      568999999998 433  5678999999999999999987554

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=6.5e-15  Score=119.62  Aligned_cols=111  Identities=16%  Similarity=0.171  Sum_probs=81.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .+++|||||||+|..++.+|+.|++|+++|. ++||+.|+++...++....        .....+...+|..........
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  127 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPA--------FDKWVIEEANWLTLDKDVPAG  127 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHH--------HHTCEEEECCGGGHHHHSCCT
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccc--------cceeeeeeccccccccccCCC
Confidence            4679999999999999999999999999999 5699999998877654211        113445555554322111235


Q ss_pred             CCccEEEEec-C--CCC------CChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          143 PPFDYIIGTD-V--YAE------HLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       143 ~~fD~V~~~d-~--y~~------~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      +.||+|++.. +  |..      +....+++.+.++|+|||.+++....
T Consensus       128 ~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  176 (292)
T d1xvaa_         128 DGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN  176 (292)
T ss_dssp             TCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             CCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence            6899999854 3  432      23567999999999999999987643

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.54  E-value=6.9e-15  Score=121.32  Aligned_cols=120  Identities=15%  Similarity=0.122  Sum_probs=91.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~~  140 (220)
                      +|++|||+|||+|..++.+|..|+ +|+++|. +++++.+++|++.|++           ..++++...|..+.. ....
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl-----------~~~~~~~~~d~~~~~~~~~~  213 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV-----------EDRMKFIVGSAFEEMEKLQK  213 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHHHH
T ss_pred             CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCC-----------CccceeeechhhhhhHHHHh
Confidence            588999999999999999999987 5999999 6699999999999987           357788775432211 1222


Q ss_pred             cCCCccEEEEecC-CCCC---------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH
Q 027659          141 VAPPFDYIIGTDV-YAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW  195 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~---------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~  195 (220)
                      ...+||+|++.++ +...         .+..++....++|+|||.++++...+.-+ .+.|.+.+
T Consensus       214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~-~~~f~~~v  277 (324)
T d2as0a2         214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVD-LQMFKDMI  277 (324)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSC-HHHHHHHH
T ss_pred             ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCC-HHHHHHHH
Confidence            3578999999988 5432         24567778888899999999887666543 35665554

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.53  E-value=5.5e-14  Score=115.37  Aligned_cols=121  Identities=17%  Similarity=0.106  Sum_probs=90.5

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Ccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~~  139 (220)
                      .+|++|||++||+|..|+.++..|+ +|+++|. +.+++.+++|++.|++.          ..++++...|..+.- ...
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~----------~~~~~~i~~d~~~~l~~~~  212 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLD----------MANHQLVVMDVFDYFKYAR  212 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC----------CTTEEEEESCHHHHHHHHH
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhccc----------CcceEEEEccHHHHHHHHH
Confidence            3789999999999999999998888 5999999 56999999999999872          346888875442211 112


Q ss_pred             ccCCCccEEEEecC-CCCC---------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHH
Q 027659          140 AVAPPFDYIIGTDV-YAEH---------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQM  194 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~---------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~  194 (220)
                      ...++||+|+..++ +...         .+..|++...++|+|||.++++...+.-. .+.|.+.
T Consensus       213 ~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~~~-~~~f~~~  276 (317)
T d2b78a2         213 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAANMT-VSQFKKQ  276 (317)
T ss_dssp             HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSC-HHHHHHH
T ss_pred             hhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCC-HHHHHHH
Confidence            23568999999999 6432         25678888889999999999988765543 3445443

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.53  E-value=1.7e-14  Score=115.12  Aligned_cols=125  Identities=10%  Similarity=0.035  Sum_probs=90.6

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..+.+|||+|||+|.++..++.. +.+|+++|. +++++.++++...              ..++++.+.+..+   ++.
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--------------~~~~~~~~~d~~~---~~~  154 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--------------MPVGKFILASMET---ATL  154 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--------------SSEEEEEESCGGG---CCC
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--------------cccceeEEccccc---ccc
Confidence            35679999999999999987754 567999998 6699999876542              2356777754433   333


Q ss_pred             cCCCccEEEEecC-CCCCC--hHHHHHHHHHhhCCCcEEEEEEEecCch-------------HHHHHHHHHhc-CCeEEE
Q 027659          141 VAPPFDYIIGTDV-YAEHL--LEPLLQTIFALSGPKTTILLGYEIRSTS-------------VHEQMLQMWKS-NFNVKL  203 (220)
Q Consensus       141 ~~~~fD~V~~~d~-y~~~~--~~~l~~~l~~~l~~~g~~~i~~~~r~~~-------------~~~~f~~~~~~-~f~v~~  203 (220)
                      .+++||+|++..+ ++...  ...+++.+.++|+|||.+++........             ..+.|.+.+++ +|++.+
T Consensus       155 ~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d~~d~~~~rs~~~~~~l~~~aGf~ii~  234 (254)
T d1xtpa_         155 PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVK  234 (254)
T ss_dssp             CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEETTTTEEEBCHHHHHHHHHHHTCCEEE
T ss_pred             CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceecccCCceeCCHHHHHHHHHHcCCEEEE
Confidence            4678999999999 65543  5688999999999999999976533211             13566677754 898754


Q ss_pred             e
Q 027659          204 V  204 (220)
Q Consensus       204 v  204 (220)
                      .
T Consensus       235 ~  235 (254)
T d1xtpa_         235 E  235 (254)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1e-14  Score=110.87  Aligned_cols=107  Identities=14%  Similarity=0.150  Sum_probs=85.8

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..+++||||+||+|.+|+.++.+|++ |+++|. +++++.+++|++.++.            .++.+...|....  +..
T Consensus        42 ~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~------------~~~~ii~~d~~~~--l~~  107 (183)
T d2fpoa1          42 IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA------------GNARVVNSNAMSF--LAQ  107 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC------------CSEEEECSCHHHH--HSS
T ss_pred             cchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc------------cceeeeeeccccc--ccc
Confidence            47889999999999999999999985 999998 6799999999987654            4666666443322  222


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHH--hhCCCcEEEEEEEec
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFA--LSGPKTTILLGYEIR  183 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~--~l~~~g~~~i~~~~r  183 (220)
                      ...+||+|++.|||.....+.++..+.+  +|+++|.+++-+..+
T Consensus       108 ~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE~~~~  152 (183)
T d2fpoa1         108 KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEVE  152 (183)
T ss_dssp             CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             cccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEEecCc
Confidence            4578999999988888888999998876  489999988865543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.52  E-value=9.4e-14  Score=109.04  Aligned_cols=150  Identities=11%  Similarity=0.070  Sum_probs=104.8

Q ss_pred             cccccchHH-HHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhh
Q 027659           35 GTTVWDASV-VFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTS  110 (220)
Q Consensus        35 g~~~W~~s~-~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~  110 (220)
                      ..++|+.-. -|+..|......    -...+|.+|||||||+|..+..+|..+  ..|+++|+ +.+++.++.++..+  
T Consensus        48 e~r~w~p~rsklaA~i~~gl~~----l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--  121 (230)
T d1g8sa_          48 EYRIWNPNKSKLAAAIIKGLKV----MPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--  121 (230)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCC----CCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--
T ss_pred             eeeeECCCccHHHHHHHhhHHh----CCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--
Confidence            456777644 566666543211    134578999999999999999999875  47999999 66999888775543  


Q ss_pred             hhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCch---
Q 027659          111 RISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS---  186 (220)
Q Consensus       111 ~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~---  186 (220)
                                  .++.....+...+...  ....+|++++... ++......++..+.++|+|||.++++.+.+..+   
T Consensus       122 ------------~ni~~i~~d~~~~~~~--~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~  187 (230)
T d1g8sa_         122 ------------ENIIPILGDANKPQEY--ANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVTK  187 (230)
T ss_dssp             ------------TTEEEEECCTTCGGGG--TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSSS
T ss_pred             ------------cccceEEEeeccCccc--ccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCCC
Confidence                        3566666555544332  3456777666555 777788999999999999999999998776542   


Q ss_pred             ----HHHHHHHHHh-cCCeEEEe
Q 027659          187 ----VHEQMLQMWK-SNFNVKLV  204 (220)
Q Consensus       187 ----~~~~f~~~~~-~~f~v~~v  204 (220)
                          .++...+.++ .+|++.+.
T Consensus       188 ~~~~~~~e~~~~L~~aGF~ive~  210 (230)
T d1g8sa_         188 DPKEIFKEQKEILEAGGFKIVDE  210 (230)
T ss_dssp             CHHHHHHHHHHHHHHHTEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCEEEEE
Confidence                2344445554 48987543

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=2.9e-13  Score=108.06  Aligned_cols=123  Identities=16%  Similarity=0.198  Sum_probs=90.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +|.+|||+|||+|..++.+|+.|+ +|+++|. +++++.+++|++.|++           ..++++...|..+..    .
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l-----------~~~v~~~~~D~~~~~----~  171 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKV-----------EDRMSAYNMDNRDFP----G  171 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTC-----------TTTEEEECSCTTTCC----C
T ss_pred             CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCC-----------CceEEEEEcchHHhc----c
Confidence            688999999999999999998885 7999999 6799999999999988           467899887655432    2


Q ss_pred             CCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCc----hHHHHHHHHHh-cCCeEEEee
Q 027659          142 APPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRST----SVHEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~----~~~~~f~~~~~-~~f~v~~v~  205 (220)
                      ...||.|+.+++ +..    .++....+++++||.+.+-......    ...+.+.+..+ .+++++.+.
T Consensus       172 ~~~~D~Ii~~~p~~~~----~~l~~a~~~l~~gG~lh~~~~~~~~~~~~~~~e~~~~~~~~~g~~v~~~~  237 (260)
T d2frna1         172 ENIADRILMGYVVRTH----EFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLN  237 (260)
T ss_dssp             CSCEEEEEECCCSSGG----GGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCCCEEEECCCCchH----HHHHHHHhhcCCCCEEEEEeccccccchhhHHHHHHHHHHHcCCceEEEE
Confidence            467999999888 543    3455666788999987653332222    12334444443 477776544

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.49  E-value=1.7e-14  Score=109.42  Aligned_cols=111  Identities=15%  Similarity=0.233  Sum_probs=87.4

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  137 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-  137 (220)
                      ...+|++||||+||+|.+|+.++.+|++ |+++|. +++++.+++|++.++.           ..++++...|....-. 
T Consensus        38 ~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~-----------~~~~~i~~~D~~~~l~~  106 (182)
T d2fhpa1          38 PYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKE-----------PEKFEVRKMDANRALEQ  106 (182)
T ss_dssp             SCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHHHH
T ss_pred             HhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhc-----------ccccccccccchhhhhh
Confidence            3458999999999999999999999995 999998 6799999999998875           3577888765433211 


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHH--hhCCCcEEEEEEEe
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFA--LSGPKTTILLGYEI  182 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~--~l~~~g~~~i~~~~  182 (220)
                      ......+||+|++.|||.......++..+..  +|+++|.+++-+..
T Consensus       107 ~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         107 FYEEKLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             HHHTTCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             hcccCCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            1123568999998888888888888888865  58999988875543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.47  E-value=4e-13  Score=105.08  Aligned_cols=151  Identities=18%  Similarity=0.176  Sum_probs=102.1

Q ss_pred             cccccchH-HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhh
Q 027659           35 GTTVWDAS-VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNT  109 (220)
Q Consensus        35 g~~~W~~s-~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~  109 (220)
                      ..++|+-- .-|+..|......    -...+|.+|||||||+|..+..+|+. |  .+|+++|+ +.+++.++.+++.. 
T Consensus        47 e~R~w~p~rSKlaa~i~~~l~~----l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~-  121 (227)
T d1g8aa_          47 EYRIWNPNRSKLGAAIMNGLKN----FPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER-  121 (227)
T ss_dssp             EEEECCTTTCHHHHHHHTTCCC----CCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC-
T ss_pred             eEEEECCCccHHHHHHHccccc----cccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc-
Confidence            45667542 2345555543211    13458999999999999999999975 4  47999999 66999998876543 


Q ss_pred             hhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCch---
Q 027659          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTS---  186 (220)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~---  186 (220)
                                   .++.....|-............+|+|+. ++.+......+++.+.++|+|||.++++...++..   
T Consensus       122 -------------~~~~~i~~d~~~~~~~~~~~~~vD~i~~-d~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~  187 (227)
T d1g8aa_         122 -------------RNIVPILGDATKPEEYRALVPKVDVIFE-DVAQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTK  187 (227)
T ss_dssp             -------------TTEEEEECCTTCGGGGTTTCCCEEEEEE-CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTS
T ss_pred             -------------CCceEEEEECCCcccccccccceEEEEE-EccccchHHHHHHHHHHhcccCCeEEEEEECCccCCCC
Confidence                         3556666555444443334567888875 55555667889999999999999999987765431   


Q ss_pred             ----HHHHHHHHHhcCCeEEEe
Q 027659          187 ----VHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       187 ----~~~~f~~~~~~~f~v~~v  204 (220)
                          +++...+..+++|++.+.
T Consensus       188 ~~~~v~~~v~~l~~~gf~iie~  209 (227)
T d1g8aa_         188 EPEQVFREVERELSEYFEVIER  209 (227)
T ss_dssp             CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CHHHHHHHHHHHHHcCCEEEEE
Confidence                223333344568987543

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=1e-13  Score=106.67  Aligned_cols=95  Identities=13%  Similarity=0.177  Sum_probs=74.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++.+|||||||+|..+..+    ++++++|. +++++.++++                   ++.+.+.|.   ..++..+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~----~~~~giD~s~~~~~~a~~~-------------------~~~~~~~d~---~~l~~~~   89 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIARKR-------------------GVFVLKGTA---ENLPLKD   89 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHH----TCCEEEESCHHHHHHHHHT-------------------TCEEEECBT---TBCCSCT
T ss_pred             CCCeEEEECCCCccccccc----ceEEEEeCChhhccccccc-------------------ccccccccc---ccccccc
Confidence            3458999999999876655    35799999 5688877642                   356666443   3344456


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ++||+|+++.+ ++..+...+++.+.++|+|||.+++..+...
T Consensus        90 ~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~~  132 (208)
T d1vlma_          90 ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRE  132 (208)
T ss_dssp             TCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ccccccccccccccccccccchhhhhhcCCCCceEEEEecCCc
Confidence            89999999999 8878899999999999999999999887554

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.46  E-value=1.9e-13  Score=108.33  Aligned_cols=119  Identities=13%  Similarity=0.097  Sum_probs=89.1

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+|.+|||+|||+|.+++.+|+. +  .+|+++|. +++++.+++|++.+..           ..++++...|+.+..
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~-----------~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD-----------IGNVRTSRSDIADFI  150 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC-----------CTTEEEECSCTTTCC
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC-----------CCceEEEEeeeeccc
Confidence            4568899999999999999999975 3  47999999 6699999999988654           468888887665432


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCe
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFN  200 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~  200 (220)
                          .+..||.|+..-+    ....+++.+.++|+|||.+++..+.-  +-.++..+.+++ +|.
T Consensus       151 ----~~~~fD~V~ld~p----~p~~~l~~~~~~LKpGG~lv~~~P~i--~Qv~~~~~~l~~~gf~  205 (250)
T d1yb2a1         151 ----SDQMYDAVIADIP----DPWNHVQKIASMMKPGSVATFYLPNF--DQSEKTVLSLSASGMH  205 (250)
T ss_dssp             ----CSCCEEEEEECCS----CGGGSHHHHHHTEEEEEEEEEEESSH--HHHHHHHHHSGGGTEE
T ss_pred             ----ccceeeeeeecCC----chHHHHHHHHHhcCCCceEEEEeCCc--ChHHHHHHHHHHCCCc
Confidence                3568999987433    33467888999999999988755532  223455566654 674

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=2.7e-13  Score=105.18  Aligned_cols=99  Identities=24%  Similarity=0.239  Sum_probs=75.4

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+|.+|||||||+|..+..+|+. +  .+|+++|. +++++.+++|++..+.            .++.+..   ++..
T Consensus        72 ~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~------------~n~~~~~---~d~~  136 (213)
T d1dl5a1          72 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI------------ENVIFVC---GDGY  136 (213)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEE---SCGG
T ss_pred             hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc------------ccccccc---CchH
Confidence            4558899999999999999999975 4  47999998 6799999999988765            4666665   3333


Q ss_pred             CccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 HIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ......++||+|+++.. .+..      +.+.+.|+|||++++..
T Consensus       137 ~~~~~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         137 YGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             GCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEB
T ss_pred             HccccccchhhhhhhccHHHhH------HHHHHhcCCCcEEEEEE
Confidence            33334568999999887 5432      34566799999988743

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.45  E-value=2.5e-13  Score=108.79  Aligned_cols=120  Identities=16%  Similarity=0.178  Sum_probs=87.0

Q ss_pred             HHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           42 SVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        42 s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      +..|.+++....       ......+++|+|||+|..++.+++. .++|+++|+ +++++.+++|++.|+.         
T Consensus        95 TE~lv~~~~~~~-------~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~---------  158 (271)
T d1nv8a_          95 TEELVELALELI-------RKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGV---------  158 (271)
T ss_dssp             HHHHHHHHHHHH-------HHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTC---------
T ss_pred             hhhhhhhhhhhh-------ccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCC---------
Confidence            566666666542       1113458999999999999999865 457999999 6799999999999987         


Q ss_pred             CCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC---------------------hHHHHHHHHHhhCCCcEEEE
Q 027659          120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL---------------------LEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       120 ~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~---------------------~~~l~~~l~~~l~~~g~~~i  178 (220)
                        ..++.+...+|.+..  ....++||+|++|++|-+..                     +.-+-+.+.++|+|+|.+++
T Consensus       159 --~~~~~i~~~~~~~~~--~~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~  234 (271)
T d1nv8a_         159 --SDRFFVRKGEFLEPF--KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  234 (271)
T ss_dssp             --TTSEEEEESSTTGGG--GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             --CceeEEeeccccccc--ccccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE
Confidence              457788887776542  22346899999999853221                     12233345678999999888


Q ss_pred             EEE
Q 027659          179 GYE  181 (220)
Q Consensus       179 ~~~  181 (220)
                      -+.
T Consensus       235 Eig  237 (271)
T d1nv8a_         235 EIG  237 (271)
T ss_dssp             ECC
T ss_pred             EEC
Confidence            654

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.5e-14  Score=112.61  Aligned_cols=145  Identities=15%  Similarity=0.131  Sum_probs=91.8

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccC---------CCCC--------CC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQM---------NPGS--------DL  121 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~---------~~~~--------~~  121 (220)
                      ...+|++|||||||+|..++.++..+. +|+++|+ +.+++.+++++..+.......         ....        ..
T Consensus        48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  127 (257)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHH
Confidence            456788999999999999988887776 5999999 569999999987554311000         0000        00


Q ss_pred             CCceEEEE-eeeC-CCCCccccCCCccEEEEecC-CC-C---CChHHHHHHHHHhhCCCcEEEEEEEecCc---------
Q 027659          122 LGSIQAVE-LDWG-NEDHIKAVAPPFDYIIGTDV-YA-E---HLLEPLLQTIFALSGPKTTILLGYEIRST---------  185 (220)
Q Consensus       122 ~~~v~~~~-ldw~-~~~~~~~~~~~fD~V~~~d~-y~-~---~~~~~l~~~l~~~l~~~g~~~i~~~~r~~---------  185 (220)
                      ...+.... .+-. +....+...+.||+|++..+ .+ .   +.+..+++.+.++|+|||.++++......         
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~~~~~~  207 (257)
T d2a14a1         128 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREF  207 (257)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEETTEEE
T ss_pred             hhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccceeccccc
Confidence            00111111 0000 00112234678999999988 33 2   35678899999999999999998654321         


Q ss_pred             ----hHHHHHHHHHh-cCCeEEEee
Q 027659          186 ----SVHEQMLQMWK-SNFNVKLVP  205 (220)
Q Consensus       186 ----~~~~~f~~~~~-~~f~v~~v~  205 (220)
                          -..+.+.+.++ .+|++..+.
T Consensus       208 ~~~~~~~~~~~~~l~~aGf~v~~~~  232 (257)
T d2a14a1         208 SCVALEKGEVEQAVLDAGFDIEQLL  232 (257)
T ss_dssp             ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred             cccCCCHHHHHHHHHHCCCEEEEEE
Confidence                12356666665 489887663

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.43  E-value=1.6e-13  Score=104.10  Aligned_cols=112  Identities=16%  Similarity=0.133  Sum_probs=84.2

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..+.+||||.||||.+|+.++.+||+ |+++|. .++++.+++|++..+..          .....+...|..+......
T Consensus        42 ~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~----------~~~~~~~~~d~~~~l~~~~  111 (183)
T d2ifta1          42 IHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS----------SEQAEVINQSSLDFLKQPQ  111 (183)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC----------TTTEEEECSCHHHHTTSCC
T ss_pred             cccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc----------ccccccccccccccccccc
Confidence            37789999999999999999999995 999998 67999999999876541          2234544433222111112


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHH--hhCCCcEEEEEEEecC
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFA--LSGPKTTILLGYEIRS  184 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~--~l~~~g~~~i~~~~r~  184 (220)
                      ...+||+|++.|||.......++..+..  +|+++|.+++-+..+.
T Consensus       112 ~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE~~~~~  157 (183)
T d2ifta1         112 NQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEKDK  157 (183)
T ss_dssp             SSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             cCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEEecCCC
Confidence            3457999998888888888889998876  5899999988766543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.7e-13  Score=109.09  Aligned_cols=105  Identities=19%  Similarity=0.283  Sum_probs=77.6

Q ss_pred             CcEEEeCCcccHHHHHHHHh------C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           66 KRVIELGAGCGVAGFGMALL------G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~------g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .+|||+|||+|..+..++..      +  .+++++|. +.+++.+++++.....           ..++.   .+|....
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~-----------~~~~~---~~~~~~~  107 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISN-----------LENVK---FAWHKET  107 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCS-----------CTTEE---EEEECSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccc-----------ccccc---ccchhhh
Confidence            47999999999998877643      2  35899998 4599999988764321           12333   3333221


Q ss_pred             --------CccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          137 --------HIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       137 --------~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                              ..+...++||+|++..+ |+..++..+++.+.++|+|||.+++......
T Consensus       108 ~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~  164 (280)
T d1jqea_         108 SSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS  164 (280)
T ss_dssp             HHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred             hhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence                    11234679999999999 8888999999999999999999988876544

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.1e-12  Score=102.45  Aligned_cols=80  Identities=18%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC---
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH---  137 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~---  137 (220)
                      ...++||||||+|.+++.+|+.  +.+|+++|+ +++++.+++|++.|++           ..++.+...+|.....   
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l-----------~~~~~~~~~~~~~~~~~~~  129 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNL-----------SDLIKVVKVPQKTLLMDAL  129 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTCSSTTTS
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCC-----------CcceeeeeeccHHhhhhhh
Confidence            4468999999999999999965  678999999 6799999999999987           5678887766654321   


Q ss_pred             ccccCCCccEEEEecCC
Q 027659          138 IKAVAPPFDYIIGTDVY  154 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y  154 (220)
                      .....++||+|+||++|
T Consensus       130 ~~~~~~~fD~ivsNPPY  146 (250)
T d2h00a1         130 KEESEIIYDFCMCNPPF  146 (250)
T ss_dssp             TTCCSCCBSEEEECCCC
T ss_pred             hhcccCceeEEEecCcc
Confidence            11234689999999993

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-13  Score=110.46  Aligned_cols=147  Identities=16%  Similarity=0.164  Sum_probs=90.0

Q ss_pred             CCCCCCCcEEEeCCcccHHHHHHH-HhCCeEEEecc-hhhHHHHHHHHHHhhhhhc---------cCCCCCC--------
Q 027659           60 PSKLKGKRVIELGAGCGVAGFGMA-LLGCNVITTDQ-IEVLPLLKRNVEWNTSRIS---------QMNPGSD--------  120 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~~~l~la-~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~---------~~~~~~~--------  120 (220)
                      +...+|.++||||||+|..++..+ +.+.+|+++|+ +.|++.+++++........         ...+...        
T Consensus        50 ~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  129 (263)
T d2g72a1          50 TGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQ  129 (263)
T ss_dssp             TSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHH
T ss_pred             CCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHH
Confidence            356789999999999998886655 45667999999 5699999887653221000         0000000        


Q ss_pred             CCCce-EEEEeeeCCCCC---ccccCCCccEEEEecC--CCC---CChHHHHHHHHHhhCCCcEEEEEEEecCc------
Q 027659          121 LLGSI-QAVELDWGNEDH---IKAVAPPFDYIIGTDV--YAE---HLLEPLLQTIFALSGPKTTILLGYEIRST------  185 (220)
Q Consensus       121 ~~~~v-~~~~ldw~~~~~---~~~~~~~fD~V~~~d~--y~~---~~~~~l~~~l~~~l~~~g~~~i~~~~r~~------  185 (220)
                      ....+ .+...|......   .....+.||+|++.-+  +-.   +.+..+++.+.++|||||.+++....+..      
T Consensus       130 ~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~~  209 (263)
T d2g72a1         130 LRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAGE  209 (263)
T ss_dssp             HHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEETT
T ss_pred             hhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccCC
Confidence            00001 122222222221   1123457999999988  322   24678889999999999999988664432      


Q ss_pred             -------hHHHHHHHHHh-cCCeEEEeeC
Q 027659          186 -------SVHEQMLQMWK-SNFNVKLVPK  206 (220)
Q Consensus       186 -------~~~~~f~~~~~-~~f~v~~v~~  206 (220)
                             -..+.+.+.++ .+|++..+..
T Consensus       210 ~~~~~~~~t~e~v~~~l~~aGf~v~~~~~  238 (263)
T d2g72a1         210 ARLTVVPVSEEEVREALVRSGYKVRDLRT  238 (263)
T ss_dssp             EEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred             cccccCCCCHHHHHHHHHHCCCeEEEEEE
Confidence                   12355566665 4898876543

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.41  E-value=5.8e-13  Score=106.12  Aligned_cols=102  Identities=14%  Similarity=0.048  Sum_probs=82.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ..++|||||||+|..+..+++.  +.+++++|++++++.++++++..+.           ..++.+...|..+.     .
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~-----------~~ri~~~~~d~~~~-----~  144 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGL-----------ADRVTVAEGDFFKP-----L  144 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTC-----------TTTEEEEECCTTSC-----C
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCC-----------cceeeeeeeecccc-----c
Confidence            4468999999999999999987  4579999999999999999988765           46788888554322     2


Q ss_pred             CCCccEEEEecC-CCC--CChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          142 APPFDYIIGTDV-YAE--HLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~--~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      +..||+|+++.+ ++.  +....+++.+.+.|+|||+++|...
T Consensus       145 p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~  187 (256)
T d1qzza2         145 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  187 (256)
T ss_dssp             SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEe
Confidence            456999999999 543  3456889999999999999998764

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=1.3e-12  Score=104.75  Aligned_cols=95  Identities=12%  Similarity=0.077  Sum_probs=74.3

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .++.+|||+|||+|..+..+++.+  .+|+++|+ +++++.++++                 ..++.+...|   ...++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-----------------~~~~~~~~~d---~~~l~  142 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----------------YPQVTFCVAS---SHRLP  142 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-----------------CTTSEEEECC---TTSCS
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-----------------cccccceeee---hhhcc
Confidence            367799999999999999999874  57999999 5688877654                 1367777744   44455


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ..++.||+|++... .+       ++.+.++|||||.++++.+...
T Consensus       143 ~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~~  181 (268)
T d1p91a_         143 FSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPR  181 (268)
T ss_dssp             BCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCCc
Confidence            56789999998877 43       4668899999999999987643

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.40  E-value=1.3e-12  Score=104.45  Aligned_cols=123  Identities=13%  Similarity=0.044  Sum_probs=89.1

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+|.+|||+|||+|.+++.+|+.   +.+|+++|. +++++.+++|++..+.           ..++.+...|...  
T Consensus       100 ~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~-----------~~~v~~~~~d~~~--  166 (266)
T d1o54a_         100 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGL-----------IERVTIKVRDISE--  166 (266)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTC-----------GGGEEEECCCGGG--
T ss_pred             CCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhcc-----------ccCcEEEeccccc--
Confidence            4568999999999999999999975   358999998 6799999999998875           3456665533211  


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhc-CCeEEEe
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKS-NFNVKLV  204 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~-~f~v~~v  204 (220)
                        ......||.|+..    ......+++.+.++|||||.+++..+.-  +..++..+.+++ +|...++
T Consensus       167 --~~~~~~~D~V~~d----~p~p~~~l~~~~~~LKpGG~lv~~~P~~--~Qv~~~~~~l~~~gF~~i~~  227 (266)
T d1o54a_         167 --GFDEKDVDALFLD----VPDPWNYIDKCWEALKGGGRFATVCPTT--NQVQETLKKLQELPFIRIEV  227 (266)
T ss_dssp             --CCSCCSEEEEEEC----CSCGGGTHHHHHHHEEEEEEEEEEESSH--HHHHHHHHHHHHSSEEEEEE
T ss_pred             --cccccceeeeEec----CCCHHHHHHHHHhhcCCCCEEEEEeCcc--cHHHHHHHHHHHCCceeEEE
Confidence              1234578888753    3456678899999999999988766532  224566666654 6754433

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.7e-14  Score=110.18  Aligned_cols=102  Identities=19%  Similarity=0.186  Sum_probs=75.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      .|++|||||||+|..+..+++.+ .+|+++|+ +++++.++++.+...             .++.....++.... ....
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~-------------~~~~~~~~~~~~~~-~~~~  118 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-------------HKVIPLKGLWEDVA-PTLP  118 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-------------SEEEEEESCHHHHG-GGSC
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc-------------cccccccccccccc-cccc
Confidence            67899999999999999999875 56999999 669999998876543             35566654443221 1224


Q ss_pred             CCCccEEEEec-----C-CCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          142 APPFDYIIGTD-----V-YAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       142 ~~~fD~V~~~d-----~-y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ..+||.|+...     . ++....+.+++.+.++|+|||.+.+.
T Consensus       119 ~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         119 DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             TTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             cccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            57899987432     2 34445678999999999999998764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-12  Score=101.48  Aligned_cols=104  Identities=21%  Similarity=0.247  Sum_probs=75.7

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+|.+|||+|||+|..+..+|+. +  .+|+++|. +++++.+++|++..+.....       ..++.+...   +..
T Consensus        73 ~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~-------~~~~~~~~g---D~~  142 (224)
T d1i1na_          73 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLS-------SGRVQLVVG---DGR  142 (224)
T ss_dssp             TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHH-------TSSEEEEES---CGG
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccc-------ccceEEEEe---ecc
Confidence            3457889999999999999999975 3  47999998 77999999999876542111       245676663   333


Q ss_pred             CccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 HIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ........||.|+++.. .+.  +    ..+.+.|+|||++++..
T Consensus       143 ~~~~~~~~fD~I~~~~~~~~i--p----~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         143 MGYAEEAPYDAIHVGAAAPVV--P----QALIDQLKPGGRLILPV  181 (224)
T ss_dssp             GCCGGGCCEEEEEECSBBSSC--C----HHHHHTEEEEEEEEEEE
T ss_pred             cccchhhhhhhhhhhcchhhc--C----HHHHhhcCCCcEEEEEE
Confidence            22334568999998877 432  2    34667899999998854

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.37  E-value=2.5e-12  Score=102.51  Aligned_cols=118  Identities=17%  Similarity=0.177  Sum_probs=86.9

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+|.+|||+|||+|.+++.+|+. |  .+|+++|. +++++.+++|++.....         ...++.+...|..+  
T Consensus        93 ~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~---------~~~nv~~~~~d~~~--  161 (264)
T d1i9ga_          93 DIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ---------PPDNWRLVVSDLAD--  161 (264)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS---------CCTTEEEECSCGGG--
T ss_pred             CCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC---------CCceEEEEeccccc--
Confidence            4457999999999999999999975 4  47999998 67999999999875321         13578888754433  


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  196 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~  196 (220)
                       .+..++.||.|+.. +   ......+..+.++|+|||.+++..+.-..  .....+.++
T Consensus       162 -~~~~~~~fDaV~ld-l---p~P~~~l~~~~~~LkpGG~lv~~~P~i~Q--v~~~~~~l~  214 (264)
T d1i9ga_         162 -SELPDGSVDRAVLD-M---LAPWEVLDAVSRLLVAGGVLMVYVATVTQ--LSRIVEALR  214 (264)
T ss_dssp             -CCCCTTCEEEEEEE-S---SCGGGGHHHHHHHEEEEEEEEEEESSHHH--HHHHHHHHH
T ss_pred             -ccccCCCcceEEEe-c---CCHHHHHHHHHhccCCCCEEEEEeCccCh--HHHHHHHHH
Confidence             33346789999863 3   33457788899999999998776654332  345556654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.35  E-value=1.8e-12  Score=101.06  Aligned_cols=110  Identities=14%  Similarity=0.149  Sum_probs=78.4

Q ss_pred             hHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCC
Q 027659           41 ASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGS  119 (220)
Q Consensus        41 ~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~  119 (220)
                      +++.+..++.+.+       ...+|.+|||+|||+|..+..+|+++.+|+++|. +++++.+++|...+           
T Consensus        54 ~~p~~~a~ml~~L-------~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~-----------  115 (224)
T d1vbfa_          54 TALNLGIFMLDEL-------DLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY-----------  115 (224)
T ss_dssp             CCHHHHHHHHHHT-------TCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC-----------
T ss_pred             ehhhhHHHHHHHh-------hhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc-----------
Confidence            3444544455543       4558889999999999999999999999999998 67888888875532           


Q ss_pred             CCCCceEEEEeeeCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          120 DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       120 ~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                         .++.+...|-   ........+||.|+++.. .+.  +    ..+.+.|+|||++++..
T Consensus       116 ---~nv~~~~~d~---~~g~~~~~pfD~Iiv~~a~~~i--p----~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         116 ---NNIKLILGDG---TLGYEEEKPYDRVVVWATAPTL--L----CKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             ---SSEEEEESCG---GGCCGGGCCEEEEEESSBBSSC--C----HHHHHTEEEEEEEEEEE
T ss_pred             ---cccccccCch---hhcchhhhhHHHHHhhcchhhh--h----HHHHHhcCCCCEEEEEE
Confidence               4778877442   211122468999998766 322  2    34557899999988753

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.35  E-value=2.9e-11  Score=92.84  Aligned_cols=103  Identities=16%  Similarity=0.069  Sum_probs=80.0

Q ss_pred             CCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +..|||||||+|...+.+|+..  ..++++|. +.++..+.+++..+++            .|+.+...|...... ...
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l------------~Nv~~~~~Da~~l~~-~~~   96 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA------------QNVKLLNIDADTLTD-VFE   96 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC------------SSEEEECCCGGGHHH-HCC
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc------------cCchhcccchhhhhc-ccC
Confidence            4579999999999999999875  56999998 6699999999988875            588988865433211 134


Q ss_pred             CCCccEEEEecC-CCCCC--------hHHHHHHHHHhhCCCcEEEEEE
Q 027659          142 APPFDYIIGTDV-YAEHL--------LEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~~--------~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      +..+|.|+..-+ .+...        .+.+++.+.++|+|||.++++.
T Consensus        97 ~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1          97 PGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             TTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             chhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            678998887766 33322        2689999999999999999864

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.31  E-value=7.3e-12  Score=96.95  Aligned_cols=99  Identities=19%  Similarity=0.226  Sum_probs=76.7

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ...+|.+|||+|||+|..+..+|++ |.+|+++|. +++++.+++|++..+.            .++.+...|....   
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~------------~nv~~~~gd~~~g---  139 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV------------KNVHVILGDGSKG---  139 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEESCGGGC---
T ss_pred             ccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC------------ceeEEEECccccC---
Confidence            5568889999999999999999976 778999998 6799999999998775            5888888554332   


Q ss_pred             cccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          139 KAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .....+||.|+.... ...  +.    .+...|++||++++..
T Consensus       140 ~~~~~pfD~Iiv~~a~~~i--p~----~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         140 FPPKAPYDVIIVTAGAPKI--PE----PLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             CGGGCCEEEEEECSBBSSC--CH----HHHHTEEEEEEEEEEE
T ss_pred             CcccCcceeEEeecccccC--CH----HHHHhcCCCCEEEEEE
Confidence            223678999998766 432  23    3455789999988754

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=7.2e-11  Score=97.92  Aligned_cols=144  Identities=11%  Similarity=0.105  Sum_probs=103.8

Q ss_pred             chHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCC
Q 027659           40 DASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPG  118 (220)
Q Consensus        40 ~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~  118 (220)
                      ..+..|.+++.+..       ...++.+||||-||+|..|+.+|+.+.+|+++|. +++++.+++|++.|+.        
T Consensus       195 ~~~e~l~~~v~~~~-------~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i--------  259 (358)
T d1uwva2         195 GVNQKMVARALEWL-------DVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL--------  259 (358)
T ss_dssp             HHHHHHHHHHHHHH-------TCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC--------
T ss_pred             hhhhHHHHHHHHhh-------ccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhccc--------
Confidence            45667777776653       3346778999999999999999999999999998 6799999999999987        


Q ss_pred             CCCCCceEEEEeeeCCCC-CccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh
Q 027659          119 SDLLGSIQAVELDWGNED-HIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  196 (220)
Q Consensus       119 ~~~~~~v~~~~ldw~~~~-~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~  196 (220)
                          .++.+...+-.+.. ........||+|+..++ -..   ...++.+.+ ++|.-++|++....+.  -+......+
T Consensus       260 ----~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPPR~G~---~~~~~~l~~-~~~~~ivYVSCnp~Tl--aRDl~~l~~  329 (358)
T d1uwva2         260 ----QNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSCNPATL--ARDSEALLK  329 (358)
T ss_dssp             ----CSEEEEECCTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEESCHHHH--HHHHHHHHH
T ss_pred             ----ccceeeecchhhhhhhhhhhhccCceEEeCCCCccH---HHHHHHHHH-cCCCEEEEEeCCHHHH--HHHHHHHHH
Confidence                57888885544332 12223567999999998 442   345666655 4788899998764332  233333447


Q ss_pred             cCCeEEEeeCCC
Q 027659          197 SNFNVKLVPKAK  208 (220)
Q Consensus       197 ~~f~v~~v~~~~  208 (220)
                      .+|+++.+.--+
T Consensus       330 ~gy~l~~i~~~D  341 (358)
T d1uwva2         330 AGYTIARLAMLD  341 (358)
T ss_dssp             TTCEEEEEEEEC
T ss_pred             CCCeEeEEEEEe
Confidence            789998875433

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.26  E-value=4.4e-11  Score=91.82  Aligned_cols=103  Identities=18%  Similarity=0.055  Sum_probs=80.6

Q ss_pred             CCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +..|||||||+|-..+.+|+..  ..++++|+ +.++..+.+++..+++            .|+.+...|...... ...
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l------------~Ni~~~~~da~~l~~-~~~   98 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV------------PNIKLLWVDGSDLTD-YFE   98 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC------------SSEEEEECCSSCGGG-TSC
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc------------ccceeeecCHHHHhh-hcc
Confidence            4579999999999999999875  46999998 5689999888888775            589999877654322 124


Q ss_pred             CCCccEEEEecC-CCCC--------ChHHHHHHHHHhhCCCcEEEEEE
Q 027659          142 APPFDYIIGTDV-YAEH--------LLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~~~--------~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ...+|.|+..-+ .+..        ..+.+++.+.++|+|||.++++.
T Consensus        99 ~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1          99 DGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             TTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            678999988766 3322        13789999999999999999865

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.3e-10  Score=94.99  Aligned_cols=128  Identities=14%  Similarity=0.098  Sum_probs=83.7

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+|.+|||+|||+|.+++.+|+. |  .+|++.|. +++++.+++|++..+....... ......++.+...|..+..
T Consensus        95 ~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~-~~~~~~nv~~~~~di~~~~  173 (324)
T d2b25a1          95 DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH-VEEWPDNVDFIHKDISGAT  173 (324)
T ss_dssp             TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTC-SSCCCCCEEEEESCTTCCC
T ss_pred             CCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhh-hhccccceeEEecchhhcc
Confidence            4558999999999999999999975 4  47999999 6799999999987654211100 0012457888876654432


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHh
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWK  196 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~  196 (220)
                      . ......||.|+. |+   ......+..+.++|+|||.+++..+.-..  .....+.++
T Consensus       174 ~-~~~~~~fD~V~L-D~---p~P~~~l~~~~~~LKpGG~lv~~~P~i~Q--v~~~~~~l~  226 (324)
T d2b25a1         174 E-DIKSLTFDAVAL-DM---LNPHVTLPVFYPHLKHGGVCAVYVVNITQ--VIELLDGIR  226 (324)
T ss_dssp             --------EEEEEE-CS---SSTTTTHHHHGGGEEEEEEEEEEESSHHH--HHHHHHHHH
T ss_pred             c-ccCCCCcceEee-cC---cCHHHHHHHHHHhccCCCEEEEEeCCHHH--HHHHHHHHH
Confidence            1 113467999987 44   12234678889999999998875543221  344555554

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.19  E-value=7.1e-11  Score=91.84  Aligned_cols=105  Identities=14%  Similarity=0.191  Sum_probs=74.3

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh----C----CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEee
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL----G----CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELD  131 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~----g----~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ld  131 (220)
                      ...+|.+|||+|||+|..+..+++.    |    .+|+++|. +++++.+++|+..+......       ..++.+...|
T Consensus        77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~-------~~nv~~~~~d  149 (223)
T d1r18a_          77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLD-------SGQLLIVEGD  149 (223)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHH-------HTSEEEEESC
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcC-------ccEEEEEecc
Confidence            3457889999999999999999875    2    37999998 67999999998765431100       2477887744


Q ss_pred             eCCCCCccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          132 WGNEDHIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       132 w~~~~~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      -   ........+||.|+.... ....      ..+.+.|++||++++...
T Consensus       150 ~---~~~~~~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         150 G---RKGYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG  191 (223)
T ss_dssp             G---GGCCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred             c---ccccccccceeeEEEEeechhch------HHHHHhcCCCcEEEEEEe
Confidence            3   222223568999998776 3322      345678999999987543

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=1.3e-10  Score=97.69  Aligned_cols=116  Identities=17%  Similarity=0.211  Sum_probs=76.1

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEE-EeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAV-ELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~-~ldw~~~~  136 (220)
                      ...+|.++||||||+|-+.+.+|.. |. +|+|+|+ +.+++.++++++..+........   ....+... ..+.....
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~---~~~~~~~~~~~~f~~~~  289 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM---RLNNVEFSLKKSFVDNN  289 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB---CCCCEEEEESSCSTTCH
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcc---ccccceeeeeechhhcc
Confidence            4557889999999999999988864 54 7999999 66999999998876542211100   01122221 11111111


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      .....-..+|+|+.+...+...+...++.+.+.|||||.+++.
T Consensus       290 ~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         290 RVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             HHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence            1111124578998875544566788888999999999998874

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.8e-10  Score=94.62  Aligned_cols=115  Identities=11%  Similarity=0.046  Sum_probs=79.0

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHh-CC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~-g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ...++.+|||||||+|.+.+.+|+. ++ +|+|+|+ +++++.++++++..........   ....++++...|..+.. 
T Consensus       148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g---~~~~~i~~~~gd~~~~~-  223 (328)
T d1nw3a_         148 KMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYG---KKHAEYTLERGDFLSEE-  223 (328)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHT---CCCCCEEEEECCTTSHH-
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhcc---ccCCceEEEECcccccc-
Confidence            3456889999999999999988865 54 6999999 6699999888766432111000   01357888886554321 


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ........|+|+++..++.......+..+.+.|||||.+++.
T Consensus       224 ~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         224 WRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEe
Confidence            111112358888876644455677888888999999998764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=8.8e-10  Score=85.26  Aligned_cols=129  Identities=13%  Similarity=0.109  Sum_probs=92.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~  138 (220)
                      +.++|||||||+|.-++.+|..   +.+|+.+|. ++..+.+++|++..+.           ..++++...+..+... .
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~-----------~~~i~~~~Gda~e~l~~~  127 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEA-----------EHKIDLRLKPALETLDEL  127 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTC-----------TTTEEEEESCHHHHHHHH
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCc-----------cceEEEEEeehhhcchhh
Confidence            6689999999999999999964   568999998 6799999999999887           4678888744322110 1


Q ss_pred             --cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCc------------hHHHHHHHHHhc--CCeEE
Q 027659          139 --KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRST------------SVHEQMLQMWKS--NFNVK  202 (220)
Q Consensus       139 --~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~------------~~~~~f~~~~~~--~f~v~  202 (220)
                        .....+||+|+..  ...+.....+..+.++|+|||.+++-......            ...+.|.+.++.  .|...
T Consensus       128 ~~~~~~~~fD~ifiD--~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d~~~~~ir~~~~~i~~d~r~~~~  205 (219)
T d2avda1         128 LAAGEAGTFDVAVVD--ADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYIS  205 (219)
T ss_dssp             HHTTCTTCEEEEEEC--SCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTCHHHHHHHHHHHHHHHCTTEEEE
T ss_pred             hhhcccCCccEEEEe--CCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence              1125689999964  34566778888888999999999875433221            124566666654  45555


Q ss_pred             Eee
Q 027659          203 LVP  205 (220)
Q Consensus       203 ~v~  205 (220)
                      .+|
T Consensus       206 llP  208 (219)
T d2avda1         206 LLP  208 (219)
T ss_dssp             EEC
T ss_pred             Eee
Confidence            554

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.96  E-value=1.7e-09  Score=83.98  Aligned_cols=103  Identities=15%  Similarity=0.043  Sum_probs=79.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-c
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-I  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-~  138 (220)
                      +.++|||||+++|.-++.+|..   +++|+.+|. ++..+.+++|++..+.           ..++++...+..+.-. +
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~-----------~~~i~~~~g~a~~~L~~l  127 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGV-----------DHKIDFREGPALPVLDEM  127 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTC-----------GGGEEEEESCHHHHHHHH
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhcc-----------ccceeeeehHHHHHHHHH
Confidence            5679999999999999999964   568999998 6799999999999877           4578888854432211 1


Q ss_pred             ---cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          139 ---KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       139 ---~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                         ....++||+|+.-  .+...+...++.+..+|+|||.+++-
T Consensus       128 ~~~~~~~~~fD~iFiD--a~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         128 IKDEKNHGSYDFIFVD--ADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             HHCGGGTTCBSEEEEC--SCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             HhccccCCceeEEEec--cchhhhHHHHHHHHhhcCCCcEEEEc
Confidence               1124689999953  34566788888889999999998875

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=6.8e-10  Score=85.67  Aligned_cols=102  Identities=20%  Similarity=0.223  Sum_probs=72.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-Cc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-HI  138 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-~~  138 (220)
                      +.++|||+|||+|..++.+|+.   +.+|+++|. +++++.+++|++..+.           ..+|++...+..+.- .+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl-----------~~~i~l~~Gd~~e~l~~l  124 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGL-----------QDKVTILNGASQDLIPQL  124 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTC-----------GGGEEEEESCHHHHGGGH
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCC-----------Cccceeeeccccccccch
Confidence            5579999999999999999964   578999998 6799999999998876           467888885543321 11


Q ss_pred             c--ccCCCccEEEEecCCCCCChHH--HHHHHHHhhCCCcEEEE
Q 027659          139 K--AVAPPFDYIIGTDVYAEHLLEP--LLQTIFALSGPKTTILL  178 (220)
Q Consensus       139 ~--~~~~~fD~V~~~d~y~~~~~~~--l~~~l~~~l~~~g~~~i  178 (220)
                      .  .....||+|+..  .+.+....  .+....++|+|||++++
T Consensus       125 ~~~~~~~~~D~ifiD--~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         125 KKKYDVDTLDMVFLD--HWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             HHHSCCCCEEEEEEC--SCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             hhcccccccceeeec--ccccccccHHHHHHHhCccCCCcEEEE
Confidence            1  124679999854  22333333  23344567999997665

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.85  E-value=9e-09  Score=84.03  Aligned_cols=124  Identities=11%  Similarity=0.046  Sum_probs=84.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh----C---CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALL----G---CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~----g---~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      .+.+|||.+||+|...+.+...    +   ..++++|+ +.++..++.|+..++.             .......|+...
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-------------~~~~~~~d~~~~  183 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-------------KMTLLHQDGLAN  183 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-------------CCEEEESCTTSC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-------------hhhhhccccccc
Confidence            5678999999999988887642    1   25999999 5699999999887754             344544333221


Q ss_pred             CCccccCCCccEEEEecCCCCC-------------------ChHHHHHHHHHhhCCCcEEEEEEEecC--chHHHHHHHH
Q 027659          136 DHIKAVAPPFDYIIGTDVYAEH-------------------LLEPLLQTIFALSGPKTTILLGYEIRS--TSVHEQMLQM  194 (220)
Q Consensus       136 ~~~~~~~~~fD~V~~~d~y~~~-------------------~~~~l~~~l~~~l~~~g~~~i~~~~r~--~~~~~~f~~~  194 (220)
                          ....+||+|++++||...                   ....++..+.++|+|+|.+.+..+..-  ......+.+.
T Consensus       184 ----~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~  259 (328)
T d2f8la1         184 ----LLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKF  259 (328)
T ss_dssp             ----CCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHH
T ss_pred             ----cccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHH
Confidence                135689999999995311                   123468888889999999888877532  1224555555


Q ss_pred             HhcCCeEEEe
Q 027659          195 WKSNFNVKLV  204 (220)
Q Consensus       195 ~~~~f~v~~v  204 (220)
                      +.+.+.++.|
T Consensus       260 L~~~~~i~~i  269 (328)
T d2f8la1         260 IKKNGHIEGI  269 (328)
T ss_dssp             HHHHEEEEEE
T ss_pred             HHhCCcEEEE
Confidence            5555555443

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=7.1e-09  Score=79.24  Aligned_cols=118  Identities=18%  Similarity=0.320  Sum_probs=82.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+.+|+|+|||.|++|+.+|-..  .+|+++|- ..-+..++.-+...++            .++++..-...+.   . 
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L------------~nv~v~~~R~E~~---~-  128 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL------------ENIEPVQSRVEEF---P-  128 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC------------SSEEEEECCTTTS---C-
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC------------cceeeeccchhhh---c-
Confidence            45689999999999999999764  47999997 5566777776666554            4788887444332   1 


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEe
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v  204 (220)
                      ...+||+|++-.+   ..+..++.....+++++|.+++ .+....  .++ .+.++.+++++.+
T Consensus       129 ~~~~fD~V~sRA~---~~~~~ll~~~~~~l~~~g~~~~-~KG~~~--~eE-l~~~~~~~~~~~~  185 (207)
T d1jsxa_         129 SEPPFDGVISRAF---ASLNDMVSWCHHLPGEQGRFYA-LKGQMP--EDE-IALLPEEYQVESV  185 (207)
T ss_dssp             CCSCEEEEECSCS---SSHHHHHHHHTTSEEEEEEEEE-EESSCC--HHH-HHTSCTTEEEEEE
T ss_pred             cccccceehhhhh---cCHHHHHHHHHHhcCCCcEEEE-ECCCCH--HHH-HHhhhcCCEEEEE
Confidence            2458999997766   5578899999999999999766 333322  222 2444556665443

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.75  E-value=2.6e-08  Score=78.04  Aligned_cols=95  Identities=18%  Similarity=0.094  Sum_probs=72.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      ...+|||||||+|..++.+++..  .+++..|+|++++.       ..           ...++++...|.-+.      
T Consensus        81 ~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~-------~~-----------~~~ri~~~~gd~~~~------  136 (244)
T d1fp1d2          81 GISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIEN-------AP-----------PLSGIEHVGGDMFAS------  136 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTT-------CC-----------CCTTEEEEECCTTTC------
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhc-------cC-----------CCCCeEEecCCcccc------
Confidence            44689999999999999999874  47899999876431       11           146899998776432      


Q ss_pred             CCCccEEEEecC-CC--CCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          142 APPFDYIIGTDV-YA--EHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       142 ~~~fD~V~~~d~-y~--~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ....|+++.+-+ ++  ++....+++.+.+.|+|||.++|....
T Consensus       137 ~p~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v  180 (244)
T d1fp1d2         137 VPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFI  180 (244)
T ss_dssp             CCCEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cccceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence            124599999999 44  345678999999999999999998754

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.75  E-value=2.5e-08  Score=77.70  Aligned_cols=105  Identities=15%  Similarity=0.158  Sum_probs=73.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      .+.+++|+|+|.|++|+.+|-.  ..+|+.+|- ..=+..++.-+..-++            .++.+......+......
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L------------~n~~i~~~R~E~~~~~~~  137 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL------------ENTTFCHDRAETFGQRKD  137 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC------------SSEEEEESCHHHHTTCTT
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC------------CCcEEEeehhhhcccccc
Confidence            4578999999999999999975  457999996 4455566655555554            356666533222111122


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      ..+.||+|++-.+   ..+..++.....+++++|.+++ ++.+.
T Consensus       138 ~~~~~D~v~sRAv---a~l~~ll~~~~~~l~~~g~~i~-~KG~~  177 (239)
T d1xdza_         138 VRESYDIVTARAV---ARLSVLSELCLPLVKKNGLFVA-LKAAS  177 (239)
T ss_dssp             TTTCEEEEEEECC---SCHHHHHHHHGGGEEEEEEEEE-EECC-
T ss_pred             ccccceEEEEhhh---hCHHHHHHHHhhhcccCCEEEE-ECCCC
Confidence            3568999999876   5688999999999999998765 44443

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.59  E-value=3.2e-08  Score=77.54  Aligned_cols=93  Identities=13%  Similarity=0.073  Sum_probs=71.1

Q ss_pred             CCcEEEeCCcccHHHHHHHHh--CCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           65 GKRVIELGAGCGVAGFGMALL--GCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~--g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ..+|||+|||+|..++.+++.  +.++++.|.+++++.+       .           ...++++...|..+.      .
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~-------~-----------~~~rv~~~~gD~f~~------~  136 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENL-------S-----------GSNNLTYVGGDMFTS------I  136 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTC-------C-----------CBTTEEEEECCTTTC------C
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhC-------c-----------ccCceEEEecCcccC------C
Confidence            367999999999999999987  4579999998765432       1           146899999765432      2


Q ss_pred             CCccEEEEecC-C--CCCChHHHHHHHHHhhCCC---cEEEEEEE
Q 027659          143 PPFDYIIGTDV-Y--AEHLLEPLLQTIFALSGPK---TTILLGYE  181 (220)
Q Consensus       143 ~~fD~V~~~d~-y--~~~~~~~l~~~l~~~l~~~---g~~~i~~~  181 (220)
                      ..+|+++...+ +  .++....+++.+.+.|+||   |+++|...
T Consensus       137 p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~  181 (244)
T d1fp2a2         137 PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM  181 (244)
T ss_dssp             CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEEC
T ss_pred             CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEe
Confidence            36899999999 4  4445678999999999998   67777653

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.56  E-value=1.3e-07  Score=73.50  Aligned_cols=80  Identities=13%  Similarity=0.026  Sum_probs=58.6

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ...++.+|||+|||+|.++..++..+++|+++|+ +.+++.++++...              ..++.+...|..+..   
T Consensus        18 ~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~--------------~~n~~i~~~D~l~~~---   80 (235)
T d1qama_          18 RLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVD--------------HDNFQVLNKDILQFK---   80 (235)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTT--------------CCSEEEECCCGGGCC---
T ss_pred             CCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhc--------------ccchhhhhhhhhhcc---
Confidence            3457889999999999999999999999999999 5588877765432              357888886654432   


Q ss_pred             ccCCCccEEEEecCCCCC
Q 027659          140 AVAPPFDYIIGTDVYAEH  157 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~  157 (220)
                      ........|++|-+|+.+
T Consensus        81 ~~~~~~~~vv~NLPYnIs   98 (235)
T d1qama_          81 FPKNQSYKIFGNIPYNIS   98 (235)
T ss_dssp             CCSSCCCEEEEECCGGGH
T ss_pred             ccccccceeeeeehhhhh
Confidence            122334567777668755

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.56  E-value=5.6e-08  Score=76.06  Aligned_cols=93  Identities=13%  Similarity=0.079  Sum_probs=69.1

Q ss_pred             CCcEEEeCCcccHHHHHHHHhC--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           65 GKRVIELGAGCGVAGFGMALLG--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      .++|||||||+|..++.+++..  .++++.|.+++++.++                  ...++++...|+.+.  .   +
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~------------------~~~r~~~~~~d~~~~--~---P  138 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAP------------------SYPGVEHVGGDMFVS--I---P  138 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCC------------------CCTTEEEEECCTTTC--C---C
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcc------------------cCCceEEeccccccc--C---C
Confidence            4689999999999999999874  5799999987643211                  135789998776543  2   1


Q ss_pred             CCccEEEEecC---CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          143 PPFDYIIGTDV---YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       143 ~~fD~V~~~d~---y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                       ..|+++..-+   |..+....+++.+.+.|+|||.++|...
T Consensus       139 -~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~  179 (243)
T d1kyza2         139 -KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAEC  179 (243)
T ss_dssp             -CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEEC
T ss_pred             -CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence             2456666666   4445577899999999999999998864

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.56  E-value=1.8e-07  Score=75.75  Aligned_cols=128  Identities=16%  Similarity=0.070  Sum_probs=84.2

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++||.||.|.|.....+++..  .+|+++|+ +++++.+++.........       ....++++...|+...  +..
T Consensus        77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~-------~~d~rv~i~~~Da~~~--l~~  147 (312)
T d1uira_          77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGA-------FDDPRAVLVIDDARAY--LER  147 (312)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTG-------GGCTTEEEEESCHHHH--HHH
T ss_pred             CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCc-------cCCCceEEEEchHHHH--hhh
Confidence            45799999999998888887653  47999999 679999998764321100       0145788887665443  222


Q ss_pred             cCCCccEEEEecC--CCCCC------hHHHHHHHHHhhCCCcEEEEEEEe---cCchHHHHHHHHHhcCCe
Q 027659          141 VAPPFDYIIGTDV--YAEHL------LEPLLQTIFALSGPKTTILLGYEI---RSTSVHEQMLQMWKSNFN  200 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~~------~~~l~~~l~~~l~~~g~~~i~~~~---r~~~~~~~f~~~~~~~f~  200 (220)
                      ..++||+|+.-..  +....      -..+.+.+++.|+|+|++++-...   ..........+.+++.|.
T Consensus       148 ~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~~F~  218 (312)
T d1uira_         148 TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVREAFR  218 (312)
T ss_dssp             CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHTTCS
T ss_pred             cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHHhCc
Confidence            4578999995432  22221      257899999999999988763321   222334455566777764

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=9.5e-08  Score=72.05  Aligned_cols=106  Identities=17%  Similarity=0.185  Sum_probs=74.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh--CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL--GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~--g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..++..+||.+||+|-.+..+++.  +.+|+++|. ++|++.++++.....             .++.+...+..+....
T Consensus        21 ~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-------------~r~~~~~~~f~~~~~~   87 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-------------DRVSLFKVSYREADFL   87 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-------------TTEEEEECCGGGHHHH
T ss_pred             CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-------------ccccchhHHHhhHHHH
Confidence            347789999999999999888875  568999998 679999999887653             3678887544332211


Q ss_pred             --cccCCCccEEEEecCCC----------CCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          139 --KAVAPPFDYIIGTDVYA----------EHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       139 --~~~~~~fD~V~~~d~y~----------~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                        ....++||.|+..--+.          .......+.....+|+|||.+.+..
T Consensus        88 ~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          88 LKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             HHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             HHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence              12246899887531121          1234566777778899999877644

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.48  E-value=9.5e-08  Score=72.11  Aligned_cols=116  Identities=21%  Similarity=0.255  Sum_probs=68.1

Q ss_pred             CCCcEEEeCCcccHHH----HHHHHh----C--CeEEEecc-hhhHHHHHHHHHHhhhhhc-------c---CCCCC---
Q 027659           64 KGKRVIELGAGCGVAG----FGMALL----G--CNVITTDQ-IEVLPLLKRNVEWNTSRIS-------Q---MNPGS---  119 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~----l~la~~----g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~-------~---~~~~~---  119 (220)
                      +..+|++.|||+|--.    +.+...    +  .+|++||+ +.+++.+++.+-.......       +   .....   
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~  103 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  103 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence            4468999999999843    333322    1  26999999 5588888754321110000       0   00000   


Q ss_pred             ------CCCCceEEEEeeeCCCCCccccCCCccEEEEecC--CCC-CChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          120 ------DLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDV--YAE-HLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       120 ------~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~--y~~-~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                            .....+.+...+-...  .+...++||+|+|..+  |.. +....+++.+.+.|+|||.+++...
T Consensus       104 ~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         104 LVRVRQELANYVEFSSVNLLEK--QYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS--SCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             eeehHHHHHHHHHHhhhhcccc--ccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence                  0011233333221111  1123578999999999  655 4468899999999999999888643

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=4.7e-07  Score=71.89  Aligned_cols=87  Identities=18%  Similarity=0.226  Sum_probs=65.2

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++..|||+|+|+|.++..+++.+++|++++. +.+++.+++....+..           ..++++...|+....    
T Consensus        19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~-----------~~~~~~i~~D~l~~~----   83 (278)
T d1zq9a1          19 LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPV-----------ASKLQVLVGDVLKTD----   83 (278)
T ss_dssp             CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTT-----------GGGEEEEESCTTTSC----
T ss_pred             CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhcc-----------ccchhhhHHHHhhhh----
Confidence            446779999999999999999999999999999 5588988887765433           357888887775542    


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHH
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTI  166 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l  166 (220)
                       ...++.|++|-+|+..  .+++..+
T Consensus        84 -~~~~~~vV~NLPY~Is--s~il~~~  106 (278)
T d1zq9a1          84 -LPFFDTCVANLPYQIS--SPFVFKL  106 (278)
T ss_dssp             -CCCCSEEEEECCGGGH--HHHHHHH
T ss_pred             -hhhhhhhhcchHHHHH--HHHHHHH
Confidence             2346789999777543  3444433

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.42  E-value=2e-07  Score=77.15  Aligned_cols=113  Identities=18%  Similarity=0.101  Sum_probs=76.6

Q ss_pred             CCCcEEEeCCcccHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCC---CCCCCCceEEEEeeeCCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNP---GSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~---~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ++++|||..||+|+-|+-.|. .|+ +|++.|+ +++++.+++|++.|+........   .......+.+...|+...  
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~--  122 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL--  122 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH--
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhh--
Confidence            567999999999999997665 566 5999999 67999999999999763110000   000112344444333211  


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      .....+.||+|..-+ |.  ...++++...+.++.||.++++.+
T Consensus       123 ~~~~~~~fDvIDiDP-fG--s~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         123 MAERHRYFHFIDLDP-FG--SPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HHHSTTCEEEEEECC-SS--CCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hHhhcCcCCcccCCC-CC--CcHHHHHHHHHHhccCCEEEEEec
Confidence            112356799887553 43  347799999999999999999864

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.41  E-value=5.1e-08  Score=76.34  Aligned_cols=79  Identities=15%  Similarity=0.105  Sum_probs=57.5

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ...+.+|||+|||+|.++..+++.+.+|+++|.+ ++++.++.+...              ..++++...|..+.+   .
T Consensus        27 ~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~--------------~~n~~ii~~D~l~~~---~   89 (245)
T d1yuba_          27 LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL--------------NTRVTLIHQDILQFQ---F   89 (245)
T ss_dssp             CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT--------------CSEEEECCSCCTTTT---C
T ss_pred             CCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhh--------------ccchhhhhhhhhccc---c
Confidence            3467789999999999999999999999999984 566666543321              347888876665432   2


Q ss_pred             cCCCccEEEEecCCCCC
Q 027659          141 VAPPFDYIIGTDVYAEH  157 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~  157 (220)
                      ....++.|++|-+|+.+
T Consensus        90 ~~~~~~~vv~NLPY~Is  106 (245)
T d1yuba_          90 PNKQRYKIVGNIPYHLS  106 (245)
T ss_dssp             CCSSEEEEEEECCSSSC
T ss_pred             ccceeeeEeeeeehhhh
Confidence            34566778888777765

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.35  E-value=6.7e-07  Score=68.11  Aligned_cols=115  Identities=15%  Similarity=0.122  Sum_probs=69.3

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHh---CCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALL---GCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..++.+|||.|||+|.....+...   ..+++++|+.+ ++..+                     ........++.... 
T Consensus        17 ~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------------------~~~~~~~~~~~~~~-   74 (223)
T d2ih2a1          17 APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------------PWAEGILADFLLWE-   74 (223)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------------TTEEEEESCGGGCC-
T ss_pred             CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------------------ccceeeeeehhccc-
Confidence            346789999999999877776643   34699999843 33221                     12344443333221 


Q ss_pred             ccccCCCccEEEEecCCCCC------------------------------ChHHHHHHHHHhhCCCcEEEEEEEecCc--
Q 027659          138 IKAVAPPFDYIIGTDVYAEH------------------------------LLEPLLQTIFALSGPKTTILLGYEIRST--  185 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~------------------------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~--  185 (220)
                         ...+||+|+++++|...                              ....++....++|+++|.+.+..+..--  
T Consensus        75 ---~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~  151 (223)
T d2ih2a1          75 ---PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVL  151 (223)
T ss_dssp             ---CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTC
T ss_pred             ---cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccC
Confidence               34689999999884211                              1234556667788999998887764321  


Q ss_pred             hHHHHHHHHHhcCCeE
Q 027659          186 SVHEQMLQMWKSNFNV  201 (220)
Q Consensus       186 ~~~~~f~~~~~~~f~v  201 (220)
                      ...+.+.+.+.+.+.+
T Consensus       152 ~~~~~lR~~l~~~~~i  167 (223)
T d2ih2a1         152 EDFALLREFLAREGKT  167 (223)
T ss_dssp             GGGHHHHHHHHHHSEE
T ss_pred             cchHHHHHHHHhcCCE
Confidence            1234444444444444

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.25  E-value=2.1e-06  Score=68.07  Aligned_cols=132  Identities=17%  Similarity=0.094  Sum_probs=80.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +.++||-||+|.|.....+.+... +|+++|+ +++++.+++-...+........  ....+++++...|....  + ..
T Consensus        72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~--~~~d~rv~i~~~Da~~~--l-~~  146 (276)
T d1mjfa_          72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAML--NGKHEKAKLTIGDGFEF--I-KN  146 (276)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHH--TTCCSSEEEEESCHHHH--H-HH
T ss_pred             CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhh--ccCCCCceEEEChHHHH--H-hc
Confidence            557999999999988888776654 6999999 6799998865432211000000  01145788887544322  1 12


Q ss_pred             CCCccEEEEecCC--CCC---ChHHHHHHHHHhhCCCcEEEEEEEec--CchHHHHHHHHHhcCCe
Q 027659          142 APPFDYIIGTDVY--AEH---LLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFN  200 (220)
Q Consensus       142 ~~~fD~V~~~d~y--~~~---~~~~l~~~l~~~l~~~g~~~i~~~~r--~~~~~~~f~~~~~~~f~  200 (220)
                      .++||+|+.--.-  ...   .-.++.+.+++.|+|+|++++-...-  .........+.+++.|.
T Consensus       147 ~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~~~~tl~~~F~  212 (276)
T d1mjfa_         147 NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMKKVFD  212 (276)
T ss_dssp             CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHHHHCS
T ss_pred             cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecCCcchhHHHHHHHHHHHHhhCC
Confidence            5789999963331  111   12578999999999999987643322  22234445555665553

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.21  E-value=4.7e-06  Score=69.93  Aligned_cols=127  Identities=13%  Similarity=0.062  Sum_probs=84.5

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---------------CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEE
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---------------GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA  127 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---------------g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~  127 (220)
                      .+.+|+|-.||+|..-+.+.+.               ...+.+.|+ +.+...++-|+..++..          ......
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~----------~~~~~i  231 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG----------TDRSPI  231 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC----------SSCCSE
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc----------ccccee
Confidence            5679999999999888887753               124899998 66999999998887652          122333


Q ss_pred             EEeeeCCCCCccccCCCccEEEEecCCCCC------------------ChHHHHHHHHHhhCCCcEEEEEEEecC---ch
Q 027659          128 VELDWGNEDHIKAVAPPFDYIIGTDVYAEH------------------LLEPLLQTIFALSGPKTTILLGYEIRS---TS  186 (220)
Q Consensus       128 ~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~------------------~~~~l~~~l~~~l~~~g~~~i~~~~r~---~~  186 (220)
                      ...|.-..    ....+||+|+++|||...                  ....++..+.++|++||.+.+..+...   ..
T Consensus       232 ~~~d~l~~----~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~L~~~~  307 (425)
T d2okca1         232 VCEDSLEK----EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNVLFEAG  307 (425)
T ss_dssp             EECCTTTS----CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHHHCST
T ss_pred             ecCchhhh----hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHHhhhhh
Confidence            33222211    135689999999995321                  123588888899999999888887532   22


Q ss_pred             HHHHHHHHHhcCCeEEEe
Q 027659          187 VHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       187 ~~~~f~~~~~~~f~v~~v  204 (220)
                      ....+.+.+-+.+.++.|
T Consensus       308 ~~~~iR~~Ll~~~~i~aI  325 (425)
T d2okca1         308 AGETIRKRLLQDFNLHTI  325 (425)
T ss_dssp             HHHHHHHHHHHHEEEEEE
T ss_pred             hHHHHHHHHHHhcchhHh
Confidence            345566666555555433

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=5.4e-06  Score=66.19  Aligned_cols=127  Identities=13%  Similarity=0.056  Sum_probs=83.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++||-||.|.|...-.+++..  .+|+++|+ +++++.+++-...+....        ..+++++...|....  +..
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~--------~d~rv~v~~~Da~~~--l~~  158 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGF--------DDPRAEIVIANGAEY--VRK  158 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--GGG
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccc--------cCCCcEEEhhhHHHH--Hhc
Confidence            45799999999998888887753  46999999 679999988766554211        135788887554332  223


Q ss_pred             cCCCccEEEEecC--C-CCC---ChHHHHHHHHHhhCCCcEEEEEEEe--cCchHHHHHHHHHhcCCe
Q 027659          141 VAPPFDYIIGTDV--Y-AEH---LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFN  200 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y-~~~---~~~~l~~~l~~~l~~~g~~~i~~~~--r~~~~~~~f~~~~~~~f~  200 (220)
                      ..++||+|+.-..  . ...   .-.++.+.+++.|+|+|++.+-...  ..........+.++..|.
T Consensus       159 ~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~  226 (295)
T d1inla_         159 FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFP  226 (295)
T ss_dssp             CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCS
T ss_pred             CCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcc
Confidence            4678999996433  1 111   2468999999999999998764322  222234455555665553

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.09  E-value=5.8e-06  Score=65.40  Aligned_cols=128  Identities=11%  Similarity=0.002  Sum_probs=87.1

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++||-||-|.|...-.+.+. + .+|+++|+ +++++.+++-...+...        ...+++++...|....  +..
T Consensus        75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~--------~~d~r~~i~~~D~~~~--l~~  144 (274)
T d1iy9a_          75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGK--------LDDPRVDVQVDDGFMH--IAK  144 (274)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTT--------TTSTTEEEEESCSHHH--HHT
T ss_pred             CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhccc--------ccCCCeEEEechHHHH--Hhh
Confidence            4579999999999999988875 3 47999999 67999998876655421        1245788777443221  222


Q ss_pred             cCCCccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEE--ecCchHHHHHHHHHhcCCeE
Q 027659          141 VAPPFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYE--IRSTSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~--~r~~~~~~~f~~~~~~~f~v  201 (220)
                      ..++||+|+.-..  ....   .-..+.+.+++.|+|+|+++.-..  ...........+.+++.|..
T Consensus       145 ~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~  212 (274)
T d1iy9a_         145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPI  212 (274)
T ss_dssp             CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSE
T ss_pred             cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCc
Confidence            4578999997644  2111   246789999999999999876332  22333455666777777743

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.04  E-value=4.3e-06  Score=67.21  Aligned_cols=128  Identities=13%  Similarity=0.025  Sum_probs=80.4

Q ss_pred             CCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++||-||.|.|...-.+.+..  .+|+++|+ +++++.+++-...+....        ..+++++...|....  +..
T Consensus       106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~--------~dprv~i~i~Da~~~--l~~  175 (312)
T d2b2ca1         106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGF--------SHPKLDLFCGDGFEF--LKN  175 (312)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGG--------GCTTEEEECSCHHHH--HHH
T ss_pred             CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhcccc--------CCCCeEEEEchHHHH--HHh
Confidence            45689999999999998888754  47999999 679999987654432211        135777776443322  223


Q ss_pred             cCCCccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEEe--cCchHHHHHHHHHhcCCeE
Q 027659          141 VAPPFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYEI--RSTSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~~--r~~~~~~~f~~~~~~~f~v  201 (220)
                      ..++||+|+.--.  ....   .-..+.+.+++.|+|+|+++.-...  -.........+.+++.|..
T Consensus       176 ~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~  243 (312)
T d2b2ca1         176 HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPA  243 (312)
T ss_dssp             CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSE
T ss_pred             CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccce
Confidence            4678999997433  1111   1357888999999999998764321  1222344555556665543

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=2.2e-06  Score=67.00  Aligned_cols=82  Identities=11%  Similarity=-0.005  Sum_probs=56.0

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc--
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI--  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~--  138 (220)
                      ...+..|||+|||+|.++..+++.+.+|+++|+ +.+++.++.....              ..++.+...|..+....  
T Consensus        19 ~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~--------------~~~~~ii~~D~l~~~~~~~   84 (252)
T d1qyra_          19 PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL--------------GPKLTIYQQDAMTFNFGEL   84 (252)
T ss_dssp             CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT--------------GGGEEEECSCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh--------------ccchhHHhhhhhhhccccc
Confidence            346789999999999999999999999999999 5577877753322              24678877555443211  


Q ss_pred             cccCCCccEEEEecCCCCC
Q 027659          139 KAVAPPFDYIIGTDVYAEH  157 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~y~~~  157 (220)
                      .......-.|++|-+|+..
T Consensus        85 ~~~~~~~~~vvgNlPY~Is  103 (252)
T d1qyra_          85 AEKMGQPLRVFGNLPYNIS  103 (252)
T ss_dssp             HHHHTSCEEEEEECCTTTH
T ss_pred             ccccCCCeEEEecchHHHH
Confidence            1011233467777667754

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.98  E-value=9e-05  Score=59.43  Aligned_cols=107  Identities=17%  Similarity=0.078  Sum_probs=70.9

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..|.+|||+.||.|-=++.++..   ...+++.|. +.-+..++.|+...+.            .++....   .+....
T Consensus       115 ~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~------------~~i~~~~---~d~~~~  179 (313)
T d1ixka_         115 KPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV------------LNVILFH---SSSLHI  179 (313)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC------------CSEEEES---SCGGGG
T ss_pred             CccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh------------hcccccc---cccccc
Confidence            47889999999999877777754   346999998 5578888888887765            3454433   233333


Q ss_pred             cccCCCccEEEEecC--CC------CC---------------ChHHHHHHHHHhhCCCcEEEEEEEecC
Q 027659          139 KAVAPPFDYIIGTDV--YA------EH---------------LLEPLLQTIFALSGPKTTILLGYEIRS  184 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~--y~------~~---------------~~~~l~~~l~~~l~~~g~~~i~~~~r~  184 (220)
                      +.....||.|+.-.+  -.      ++               ....++....++++|||.++.+...-.
T Consensus       180 ~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~  248 (313)
T d1ixka_         180 GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  248 (313)
T ss_dssp             GGGCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             ccccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence            344678999988443  21      10               122456666777899998776654433

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1.8e-05  Score=62.72  Aligned_cols=128  Identities=16%  Similarity=0.096  Sum_probs=83.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      ..++||-||-|.|...-.+.+. + .+|+++|+ +++++.+++-...+....        ...++++...|....  +..
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~--------~d~rv~i~~~Da~~~--l~~  147 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGY--------SSSKLTLHVGDGFEF--MKQ  147 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--------GCTTEEEEESCHHHH--HHT
T ss_pred             CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcccc--------CCCCceEEEccHHHH--Hhc
Confidence            4578999999999998888875 3 46999999 679999988665543211        145788887553322  222


Q ss_pred             cCCCccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEEec--CchHHHHHHHHHhcCCeE
Q 027659          141 VAPPFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNFNV  201 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~~r--~~~~~~~f~~~~~~~f~v  201 (220)
                      ..++||+|+.-..  ....   .-..+.+.+++.|+|+|++++-....  .........+.++..|..
T Consensus       148 ~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~  215 (285)
T d2o07a1         148 NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPV  215 (285)
T ss_dssp             CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSE
T ss_pred             CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCe
Confidence            3568999997533  2111   12367889999999999987754432  222344555556665644

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=0.0001  Score=54.33  Aligned_cols=117  Identities=15%  Similarity=0.154  Sum_probs=74.9

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh-C--CeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc-
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL-G--CNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI-  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~-g--~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~-  138 (220)
                      .++.+||||||++|-.+.++++. +  .+|+++|...+-          .            -..+.+...|..+.... 
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~~----------~------------i~~~~~~~~d~~~~~~~~   78 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----------P------------IVGVDFLQGDFRDELVMK   78 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----------C------------CTTEEEEESCTTSHHHHH
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccccc----------c------------cCCceEeecccccchhhh
Confidence            36789999999999999998864 3  469999973310          0            23567777555443211 


Q ss_pred             ----cccCCCccEEEEecCCCCC------------ChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEE
Q 027659          139 ----KAVAPPFDYIIGTDVYAEH------------LLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK  202 (220)
Q Consensus       139 ----~~~~~~fD~V~~~d~y~~~------------~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~  202 (220)
                          .....++|+|++-...+..            .....+....++|++||.+++=.-. . .....++..++..|+-.
T Consensus        79 ~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~-g-~~~~~l~~~l~~~F~~V  156 (180)
T d1ej0a_          79 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ-G-EGFDEYLREIRSLFTKV  156 (180)
T ss_dssp             HHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES-S-TTHHHHHHHHHHHEEEE
T ss_pred             hhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec-C-ccHHHHHHHHHhhcCEE
Confidence                1135689999986552211            1233445556678999998875432 3 33567888888888543


Q ss_pred             E
Q 027659          203 L  203 (220)
Q Consensus       203 ~  203 (220)
                      .
T Consensus       157 ~  157 (180)
T d1ej0a_         157 K  157 (180)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.00025  Score=56.20  Aligned_cols=79  Identities=16%  Similarity=0.099  Sum_probs=58.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh---CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL---GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~---g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ..|.+|||+.||.|-=++.+|.+   ..+|++.|. +.-++.+++|++..+.            .++.+...|.......
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~------------~~~~~~~~d~~~~~~~  160 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV------------SCCELAEEDFLAVSPS  160 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC------------CSEEEEECCGGGSCTT
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc------------cceeeeehhhhhhccc
Confidence            36889999999999978877754   357999998 5578899999998875            4677777555443322


Q ss_pred             cccCCCccEEEEecC
Q 027659          139 KAVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~  153 (220)
                      ....++||.|+.-.+
T Consensus       161 ~~~~~~fD~VL~DaP  175 (293)
T d2b9ea1         161 DPRYHEVHYILLDPS  175 (293)
T ss_dssp             CGGGTTEEEEEECCC
T ss_pred             ccccceeeEEeecCc
Confidence            222367999998654

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=2.5e-05  Score=67.18  Aligned_cols=131  Identities=10%  Similarity=-0.001  Sum_probs=81.0

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHh----C----------------CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCC
Q 027659           63 LKGKRVIELGAGCGVAGFGMALL----G----------------CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDL  121 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~----g----------------~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~  121 (220)
                      ..+.+|+|-.||+|..-+.+.+.    .                ..+++.|. +.+...++-|+...+..          
T Consensus       163 ~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~----------  232 (524)
T d2ar0a1         163 QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE----------  232 (524)
T ss_dssp             CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC----------
T ss_pred             ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhccc----------
Confidence            35679999999999887776642    1                14899998 66888888888776541          


Q ss_pred             CCceE-EEEeeeCCCCCc-cccCCCccEEEEecCCCCCC---------------hHHHHHHHHHhhCCCcEEEEEEEec-
Q 027659          122 LGSIQ-AVELDWGNEDHI-KAVAPPFDYIIGTDVYAEHL---------------LEPLLQTIFALSGPKTTILLGYEIR-  183 (220)
Q Consensus       122 ~~~v~-~~~ldw~~~~~~-~~~~~~fD~V~~~d~y~~~~---------------~~~l~~~l~~~l~~~g~~~i~~~~r-  183 (220)
                       .++. .....+++.... .....+||+|++||||....               --.++..+.+.|++||++.+..+.. 
T Consensus       233 -~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~  311 (524)
T d2ar0a1         233 -GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNV  311 (524)
T ss_dssp             -CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH
T ss_pred             -ccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHH
Confidence             1110 001111222111 11346899999999953221               2248888889999999988887742 


Q ss_pred             --CchHHHHHHHHHhcCCeEEEe
Q 027659          184 --STSVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       184 --~~~~~~~f~~~~~~~f~v~~v  204 (220)
                        +......+.+.+-+.+.++.|
T Consensus       312 Lf~~~~~~~iR~~Ll~~~~i~aI  334 (524)
T d2ar0a1         312 LFEGGKGTDIRRDLMDKCHLHTI  334 (524)
T ss_dssp             HHCCTHHHHHHHHHHHHEEEEEE
T ss_pred             hhhhhhhHHHHHHHHHcCCceEE
Confidence              122234555555444444433

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=0.0001  Score=58.28  Aligned_cols=109  Identities=14%  Similarity=0.043  Sum_probs=71.5

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ..|.+|||+.||.|-=++.+|..+  .+|++.|. +.=+..++.|++..+.            .++.....+..  ....
T Consensus       101 ~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~------------~~~~~~~~~~~--~~~~  166 (284)
T d1sqga2         101 QNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM------------KATVKQGDGRY--PSQW  166 (284)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC------------CCEEEECCTTC--THHH
T ss_pred             cccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccc------------cceeeeccccc--cchh
Confidence            368899999999999888888765  46999998 5588889999888775            23333332211  1111


Q ss_pred             ccCCCccEEEEecC-CC-------CC--------C-------hHHHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          140 AVAPPFDYIIGTDV-YA-------EH--------L-------LEPLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~-------~~--------~-------~~~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      .....||.|+.-.+ -.       ++        .       -..++....++|+|||.++.+...-.+
T Consensus       167 ~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~  235 (284)
T d1sqga2         167 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLP  235 (284)
T ss_dssp             HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCG
T ss_pred             cccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCch
Confidence            23568999988554 21       11        1       224566666678999987777654443

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.69  E-value=5.1e-05  Score=60.26  Aligned_cols=127  Identities=15%  Similarity=0.068  Sum_probs=82.3

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-C-CeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-G-CNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA  140 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g-~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~  140 (220)
                      +.++||-||-|.|...-.+.+. + .+|+++|+ +++++.+++-...+....        ...++++...|....-. ..
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~--------~~~r~~i~~~Da~~~l~-~~  150 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGY--------EDPRVNLVIGDGVAFLK-NA  150 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGG--------GSTTEEEEESCHHHHHH-TS
T ss_pred             CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccc--------cCCCcEEEEccHHHHHh-hc
Confidence            4468999999999999888875 3 36999999 679999988665443211        14577777744322210 11


Q ss_pred             cCCCccEEEEecC--CCCC---ChHHHHHHHHHhhCCCcEEEEEEEec--CchHHHHHHHHHhcCC
Q 027659          141 VAPPFDYIIGTDV--YAEH---LLEPLLQTIFALSGPKTTILLGYEIR--STSVHEQMLQMWKSNF  199 (220)
Q Consensus       141 ~~~~fD~V~~~d~--y~~~---~~~~l~~~l~~~l~~~g~~~i~~~~r--~~~~~~~f~~~~~~~f  199 (220)
                      ..++||+|+.--.  ....   .-..+.+.+++.|+|+|++++-....  .........+.+++.|
T Consensus       151 ~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF  216 (290)
T d1xj5a_         151 AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIF  216 (290)
T ss_dssp             CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHC
T ss_pred             cccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhc
Confidence            2458999996332  2111   13578999999999999988754332  2233444555555544

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.45  E-value=0.00016  Score=55.90  Aligned_cols=101  Identities=17%  Similarity=0.236  Sum_probs=62.1

Q ss_pred             CcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCCC
Q 027659           66 KRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPP  144 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~  144 (220)
                      .+|||+-||.|.-++.+|..|++|++++. +.+..+++.+++.........   .....++++...|-.+.  +......
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~---~~~~~ri~li~~Ds~~~--L~~~~~~  164 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIG---GWLQERLQLIHASSLTA--LTDITPR  164 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTH---HHHHHHEEEEESCHHHH--STTCSSC
T ss_pred             CEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhH---HHHhhhheeecCcHHHH--HhccCCC
Confidence            48999999999999999999999999998 557777777776543210000   00013567776432111  1223567


Q ss_pred             ccEEEEecCCCCCC----hHHHHHHHHHhhC
Q 027659          145 FDYIIGTDVYAEHL----LEPLLQTIFALSG  171 (220)
Q Consensus       145 fD~V~~~d~y~~~~----~~~l~~~l~~~l~  171 (220)
                      ||+|..-++|....    ...-++.++.+..
T Consensus       165 ~DvIYlDPMFp~~~Ksa~~kk~m~~l~~l~~  195 (250)
T d2oyra1         165 PQVVYLDPMFPHKQKSALVKKEMRVFQSLVG  195 (250)
T ss_dssp             CSEEEECCCCCCCCC-----HHHHHHHHHSC
T ss_pred             CCEEEECCCCccccccccchhHHHHHHhhcc
Confidence            99999855564332    3334444555543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.43  E-value=0.0003  Score=53.84  Aligned_cols=99  Identities=14%  Similarity=0.097  Sum_probs=60.9

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh------CCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           64 KGKRVIELGAGCGVAGFGMALL------GCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~------g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      +.++|||+|++.|.-++.+|..      .++|+++|+. .....     ..+            ...++++...|-.+..
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~-----~~~------------~~~~I~~i~gDs~~~~  142 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI-----PAS------------DMENITLHQGDCSDLT  142 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCC-----CGG------------GCTTEEEEECCSSCSG
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhh-----hhc------------cccceeeeecccccHH
Confidence            6679999999999776666532      3579999973 31111     011            1357888886655544


Q ss_pred             Cccc-cCCCccEEEEecCCCCCC-hHHHHHHHHHhhCCCcEEEEEEE
Q 027659          137 HIKA-VAPPFDYIIGTDVYAEHL-LEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       137 ~~~~-~~~~fD~V~~~d~y~~~~-~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      .... ....+|+|+.-+.+.... ...+  .+..+|++||.+++-..
T Consensus       143 ~~~~l~~~~~dlIfID~~H~~~~v~~~~--~~~~lLk~GG~iIveD~  187 (232)
T d2bm8a1         143 TFEHLREMAHPLIFIDNAHANTFNIMKW--AVDHLLEEGDYFIIEDM  187 (232)
T ss_dssp             GGGGGSSSCSSEEEEESSCSSHHHHHHH--HHHHTCCTTCEEEECSC
T ss_pred             HHHHHHhcCCCEEEEcCCcchHHHHHHH--HHhcccCcCCEEEEEcC
Confidence            3322 234688888654433222 2222  24578999999988654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.26  E-value=0.0002  Score=52.73  Aligned_cols=103  Identities=17%  Similarity=0.144  Sum_probs=68.9

Q ss_pred             CCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc--
Q 027659           62 KLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI--  138 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~--  138 (220)
                      ..+|..++|..+|.|--+..+...+.+|+++|. ++++..++..     .           ..++.+......+....  
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~-----~-----------~~~~~~~~~~f~~~~~~l~   79 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGL-----H-----------LPGLTVVQGNFRHLKRHLA   79 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHT-----C-----------CTTEEEEESCGGGHHHHHH
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhc-----c-----------ccceeEeehHHHHHHHHHH
Confidence            347889999999999999988888889999998 7788777542     1           24677777444333221  


Q ss_pred             cccCCCccEEEEecC-CCCC----------ChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          139 KAVAPPFDYIIGTDV-YAEH----------LLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       139 ~~~~~~fD~V~~~d~-y~~~----------~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ....+.+|.|+. |+ +...          .....+.....+++++|.+.+...
T Consensus        80 ~~~~~~vdgIl~-DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f  132 (182)
T d1wg8a2          80 ALGVERVDGILA-DLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF  132 (182)
T ss_dssp             HTTCSCEEEEEE-ECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HcCCCccCEEEE-EccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence            112367898876 34 3221          133456666777899998776543

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=97.17  E-value=0.0008  Score=51.84  Aligned_cols=107  Identities=11%  Similarity=0.051  Sum_probs=68.3

Q ss_pred             CCcEEEeCCcccHHHHHHHHhCC------------------------------------------eEEEecc-hhhHHHH
Q 027659           65 GKRVIELGAGCGVAGFGMALLGC------------------------------------------NVITTDQ-IEVLPLL  101 (220)
Q Consensus        65 ~~~vLELGcG~G~~~l~la~~g~------------------------------------------~v~~~D~-~~~l~~~  101 (220)
                      +..++|-=||+|.+.+.+|....                                          ++++.|. +++++.+
T Consensus        51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A  130 (249)
T d1o9ga_          51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA  130 (249)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence            44699999999999999886421                                          2345665 4466655


Q ss_pred             H---HHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc--ccCCCccEEEEecCCCCCC----------hHHHHHHH
Q 027659          102 K---RNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK--AVAPPFDYIIGTDVYAEHL----------LEPLLQTI  166 (220)
Q Consensus       102 ~---~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~--~~~~~fD~V~~~d~y~~~~----------~~~l~~~l  166 (220)
                      +   .|+...++           ...|.+...|+.+.....  ..+...++||+|++|.+..          +..+...+
T Consensus       131 ~~~r~n~~~Agl-----------~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l  199 (249)
T d1o9ga_         131 RRLRERLTAEGG-----------ALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL  199 (249)
T ss_dssp             HHHHHHHHHTTS-----------SCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCC-----------CceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHH
Confidence            3   45555554           467888887765443221  1346789999999964321          45666667


Q ss_pred             HHhhCCCcEEEEEEEe
Q 027659          167 FALSGPKTTILLGYEI  182 (220)
Q Consensus       167 ~~~l~~~g~~~i~~~~  182 (220)
                      .+.+.....++++.+.
T Consensus       200 ~~~~p~~s~~~it~~~  215 (249)
T d1o9ga_         200 ASALPAHAVIAVTDRS  215 (249)
T ss_dssp             HHHSCTTCEEEEEESS
T ss_pred             HccCCCCcEEEEeCch
Confidence            7777655555565443

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.14  E-value=0.0025  Score=48.75  Aligned_cols=117  Identities=14%  Similarity=0.053  Sum_probs=65.0

Q ss_pred             cccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhC--CeEEEecc-hh--hHHHHHHHHHHhh
Q 027659           35 GTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLG--CNVITTDQ-IE--VLPLLKRNVEWNT  109 (220)
Q Consensus        35 g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g--~~v~~~D~-~~--~l~~~~~n~~~n~  109 (220)
                      |..+=+++.-|.+...+.        ....+.+|+|||||.|-.+-.++.+.  .+|.++|+ -+  ..+..   ...++
T Consensus        45 ~~~~SR~~~Kl~~~~~~~--------~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~---~~~~~  113 (257)
T d2p41a1          45 HHAVSRGSAKLRWFVERN--------LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIP---MSTYG  113 (257)
T ss_dssp             SCCSSTHHHHHHHHHHTT--------SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCC---CCSTT
T ss_pred             CCCcchHHHHHHHHHHhc--------CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCcc---ccccc
Confidence            334456777776554433        23355689999999999999999764  46777775 22  00100   00000


Q ss_pred             hhhccCCCCCCCCCceEEEEeeeCCCCCccccCCCccEEEEecCCCCCC-------hHHHHHHHHHhhCCCcEEEE
Q 027659          110 SRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAPPFDYIIGTDVYAEHL-------LEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       110 ~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~~fD~V~~~d~y~~~~-------~~~l~~~l~~~l~~~g~~~i  178 (220)
                                  ..-+.+..   +.. -....+...|+|+|--.-+...       .-.++..+...|+|||.+++
T Consensus       114 ------------~ni~~~~~---~~d-v~~l~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         114 ------------WNLVRLQS---GVD-VFFIPPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             ------------GGGEEEEC---SCC-TTTSCCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             ------------cccccchh---hhh-HHhcCCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence                        01122221   111 1112457899998754322221       22566777788999997655

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.92  E-value=0.0014  Score=47.24  Aligned_cols=96  Identities=22%  Similarity=0.290  Sum_probs=63.5

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .+..+|+=||+|. |+.++..|. +|+.|++.|. .+.++.++.-...                +++...   .+.+.+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~----------------~~~~~~---~~~~~l~   90 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS----------------RVELLY---SNSAEIE   90 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG----------------GSEEEE---CCHHHHH
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc----------------cceeeh---hhhhhHH
Confidence            4667999999998 988888874 7999999998 5666665543222                233332   2222222


Q ss_pred             ccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEE
Q 027659          140 AVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       140 ~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      ..-...|+||++-. -......-+-+.+-+.+|||.+++
T Consensus        91 ~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1          91 TAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             HHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             HhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence            22357899999877 554444445566667788887766

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.76  E-value=0.0014  Score=47.17  Aligned_cols=96  Identities=14%  Similarity=0.042  Sum_probs=58.3

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ...+|.+||-+|+|. |+.++.+|+ .|++|+++|. ++-++.+++.    +.             . .+.  +..+...
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga-------------~-~~i--~~~~~~~   83 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GA-------------D-HYI--ATLEEGD   83 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TC-------------S-EEE--EGGGTSC
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CC-------------c-EEe--eccchHH
Confidence            345788999999996 888888875 6999999997 5566665542    21             1 111  1111111


Q ss_pred             -ccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          138 -IKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       138 -~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                       .....+.||+|+-... -....+    ....++++++|++++..
T Consensus        84 ~~~~~~~~~d~vi~~~~~~~~~~~----~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          84 WGEKYFDTFDLIVVCASSLTDIDF----NIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             HHHHSCSCEEEEEECCSCSTTCCT----TTGGGGEEEEEEEEECC
T ss_pred             HHHhhhcccceEEEEecCCccchH----HHHHHHhhccceEEEec
Confidence             1223567999886533 222222    33456788999887753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.65  E-value=0.012  Score=41.78  Aligned_cols=95  Identities=20%  Similarity=0.174  Sum_probs=59.3

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-  137 (220)
                      ...|.+||=+|||. |+..+.+|+ .|++|+++|. ++-++.+++-    +.             ...+.   +..... 
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga-------------~~~~~---~~~~~~~   83 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA-------------DVTLV---VDPAKEE   83 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC-------------SEEEE---CCTTTSC
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC-------------cEEEe---ccccccc
Confidence            44678999999996 888887775 5889999997 4555555442    11             11111   111110 


Q ss_pred             -------c-cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          138 -------I-KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       138 -------~-~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                             . ......+|+|+-+--     .+..+....++++++|++++...
T Consensus        84 ~~~~~~~~~~~~g~g~D~vid~~g-----~~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          84 ESSIIERIRSAIGDLPNVTIDCSG-----NEKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             HHHHHHHHHHHSSSCCSEEEECSC-----CHHHHHHHHHHSCTTCEEEECSC
T ss_pred             cchhhhhhhcccccCCceeeecCC-----ChHHHHHHHHHHhcCCceEEEec
Confidence                   0 012457898874422     34566777788999999887654

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.27  E-value=0.0029  Score=46.20  Aligned_cols=109  Identities=15%  Similarity=0.185  Sum_probs=60.3

Q ss_pred             CCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEE-------EEeee
Q 027659           63 LKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQA-------VELDW  132 (220)
Q Consensus        63 ~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~-------~~ldw  132 (220)
                      .+..+||=||+|. |+.++..|. +|+.|++.|. ++.++.++.....+... ..     ......+.       ..-+|
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~-~~-----~~~~~~~~~~gyA~~~s~~~  100 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITV-DD-----EAMKTAETAGGYAKEMGEEF  100 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC----------------------------
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEE-ec-----cccccccccccchhhcCHHH
Confidence            3567999999998 888888874 7999999998 56777665432211100 00     00000000       00001


Q ss_pred             CCCC--CccccCCCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEE
Q 027659          133 GNED--HIKAVAPPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTIL  177 (220)
Q Consensus       133 ~~~~--~~~~~~~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~  177 (220)
                      ....  .+...-...|+|+++-. -......-+-+.+-+.+|||.+++
T Consensus       101 ~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV  148 (183)
T d1l7da1         101 RKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII  148 (183)
T ss_dssp             -CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred             HHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence            1100  01111246899999877 555544445566667788888766

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.019  Score=40.91  Aligned_cols=117  Identities=18%  Similarity=0.156  Sum_probs=66.6

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+|.+||=+|||+ |+..+.+++ .|+ +|+++|. ++-++.+++    .+.             . .+...+-.+...
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~----~Ga-------------~-~~~~~~~~~~~~   85 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGA-------------D-LVLQISKESPQE   85 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC-------------S-EEEECSSCCHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH----hCC-------------c-cccccccccccc
Confidence            34678999999997 888887775 587 6999997 455554443    222             1 111111011100


Q ss_pred             c-----cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEE
Q 027659          138 I-----KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVK  202 (220)
Q Consensus       138 ~-----~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~  202 (220)
                      .     ......+|+|+-+--     .+..+....++++++|++++......+... .+...+.+..++.
T Consensus        86 ~~~~~~~~~g~g~Dvvid~~G-----~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~-~~~~~~~k~l~i~  149 (171)
T d1pl8a2          86 IARKVEGQLGCKPEVTIECTG-----AEASIQAGIYATRSGGTLVLVGLGSEMTTV-PLLHAAIREVDIK  149 (171)
T ss_dssp             HHHHHHHHHTSCCSEEEECSC-----CHHHHHHHHHHSCTTCEEEECSCCCSCCCC-CHHHHHHTTCEEE
T ss_pred             ccccccccCCCCceEEEeccC-----CchhHHHHHHHhcCCCEEEEEecCCCCCcc-CHHHHHHCCcEEE
Confidence            0     012457899885432     355677788889999988876543322111 2234444455554

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.94  E-value=0.009  Score=47.03  Aligned_cols=45  Identities=24%  Similarity=0.304  Sum_probs=37.5

Q ss_pred             CCCCCCcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHH
Q 027659           61 SKLKGKRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNV  105 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~  105 (220)
                      ....+.+||||-||.|-.++.+-+.|.+ |.++|. +.+++..+.|.
T Consensus         7 ~~~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~   53 (327)
T d2c7pa1           7 KQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNF   53 (327)
T ss_dssp             CTTTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHH
T ss_pred             ccCCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHC
Confidence            3457789999999999999999999998 566898 55888888774

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0037  Score=44.97  Aligned_cols=92  Identities=20%  Similarity=0.199  Sum_probs=57.0

Q ss_pred             CCCCCcEEEeCC-cc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGc-G~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+|.+||=.|+ |. |..++.+|+ .|++|++++. ++-++.+++    .+.            .  .+  .+-.+...
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga------------~--~v--i~~~~~~~   85 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGA------------H--EV--FNHREVNY   85 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC------------S--EE--EETTSTTH
T ss_pred             CCCCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCc------------c--cc--cccccccH
Confidence            447889999996 54 888888886 5899998886 444444432    222            1  11  12222210


Q ss_pred             ---c--cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          138 ---I--KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       138 ---~--~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                         .  ......+|+|+.+-      -.+.+....++++|+|+++..
T Consensus        86 ~~~i~~~t~~~g~d~v~d~~------g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          86 IDKIKKYVGEKGIDIIIEML------ANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHHHHHHHCTTCEEEEEESC------HHHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHhhhhhccCCceEEeecc------cHHHHHHHHhccCCCCEEEEE
Confidence               0  11246799998542      234567777889999998875

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.92  E-value=0.0077  Score=45.53  Aligned_cols=44  Identities=20%  Similarity=0.167  Sum_probs=39.7

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHH
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVE  106 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~  106 (220)
                      .+|..|||--||+|..++++.++|-+.+++|+ ++.++.+++++.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            47789999999999999999999999999999 679999988765

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.90  E-value=0.019  Score=41.79  Aligned_cols=80  Identities=11%  Similarity=0.155  Sum_probs=53.7

Q ss_pred             CCCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ..+++|+++|=.|++.|+   ++..+++.|++|++++. .+.++.+.+.+..+.              ++.+...|..+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--------------~~~~~~~d~~~~   83 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF--------------KVNVTAAETADD   83 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH--------------TCCCEEEECCSH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc--------------chhhhhhhcccH
Confidence            367899999999986654   34455677999999998 566777766666553              234455555554


Q ss_pred             CCccccCCCccEEEEecC
Q 027659          136 DHIKAVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~~~~~~fD~V~~~d~  153 (220)
                      ......-+..|+|+.+..
T Consensus        84 ~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          84 ASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             HHHHHHTTTCSEEEECCC
T ss_pred             HHHHHHhcCcCeeeecCc
Confidence            433333467899988754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.87  E-value=0.0097  Score=45.54  Aligned_cols=57  Identities=21%  Similarity=0.257  Sum_probs=46.2

Q ss_pred             HHHHHHHhhccccCCCCCCCCCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHH
Q 027659           43 VVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW  107 (220)
Q Consensus        43 ~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~  107 (220)
                      ..|.+++...        ...+|..|||--||+|..++++.++|-+.+++|+ ++.++.+++++..
T Consensus       194 ~~L~~~~I~~--------~s~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         194 AAVIERLVRA--------LSHPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HHHHHHHHHH--------HSCTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHH
T ss_pred             hhHHHHHHHh--------hcCCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHH
Confidence            4455555544        2347889999999999999999999999999999 6688999888764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.032  Score=42.55  Aligned_cols=81  Identities=16%  Similarity=0.221  Sum_probs=56.0

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+.           ..++.+...|..+.+.
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-----------~~~~~~~~~Dls~~~~   75 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY-----------PGTLIPYRCDLSNEED   75 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-----------SSEEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----------CceEEEEEccCCCHHH
Confidence            4789999999998876   33344566999999998 5566666665555432           3467888888877653


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-+..|+++.+--
T Consensus        76 v~~~v~~~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          76 ILSMFSAIRSQHSGVDICINNAG   98 (257)
T ss_dssp             HHHHHHHHHHHHCCCSEEEECCC
T ss_pred             HHHHHHHHHHhcCCCCEEEeccc
Confidence            21       12357899988765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.014  Score=41.50  Aligned_cols=95  Identities=25%  Similarity=0.285  Sum_probs=56.7

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ...+|.+||=+|||. |++++.+|+ .|++++++|. ++-++.+++    .+.             . .+  .+..+...
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~----lGa-------------d-~~--i~~~~~~~   86 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGA-------------D-EV--VNSRNADE   86 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTC-------------S-EE--EETTCHHH
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhc----cCC-------------c-EE--EECchhhH
Confidence            345788999999987 888888886 5889888886 554555443    221             1 11  12222211


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .....+.+|+++-+-- ....    +.....+++++|++.+..
T Consensus        87 ~~~~~~~~D~vid~~g-~~~~----~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          87 MAAHLKSFDFILNTVA-APHN----LDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             HHTTTTCEEEEEECCS-SCCC----HHHHHTTEEEEEEEEECC
T ss_pred             HHHhcCCCceeeeeee-cchh----HHHHHHHHhcCCEEEEec
Confidence            1123457998875422 1222    345556889999888754

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.47  E-value=0.031  Score=43.47  Aligned_cols=68  Identities=19%  Similarity=0.216  Sum_probs=47.4

Q ss_pred             CcEEEeCCcccHHHHHHHHhCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           66 KRVIELGAGCGVAGFGMALLGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      ++||||-||.|-.++.+-+.|.+ |.++|+ +.+++..+.|..                  -.....|..+....  .-.
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~------------------~~~~~~Di~~~~~~--~~~   60 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS------------------AKLIKGDISKISSD--EFP   60 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC------------------SEEEESCTTTSCGG--GSC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC------------------CCCccCChhhCCHh--Hcc
Confidence            37999999999999998888998 558898 557777776631                  13334444443221  234


Q ss_pred             CccEEEEecC
Q 027659          144 PFDYIIGTDV  153 (220)
Q Consensus       144 ~fD~V~~~d~  153 (220)
                      ..|+++++++
T Consensus        61 ~~dll~~g~P   70 (324)
T d1dcta_          61 KCDGIIGGPP   70 (324)
T ss_dssp             CCSEEEECCC
T ss_pred             cccEEeeccc
Confidence            6899999876

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.45  E-value=0.0098  Score=47.28  Aligned_cols=41  Identities=12%  Similarity=0.125  Sum_probs=33.7

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh-CC-eEEEecc-hhhHHHHHHH
Q 027659           64 KGKRVIELGAGCGVAGFGMALL-GC-NVITTDQ-IEVLPLLKRN  104 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~-g~-~v~~~D~-~~~l~~~~~n  104 (220)
                      ++..|||+|.|.|.++..+... ++ +|++++. +..++.++..
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~   86 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAK   86 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHh
Confidence            5678999999999999999876 44 6999998 4577777654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.37  E-value=0.043  Score=42.00  Aligned_cols=81  Identities=21%  Similarity=0.316  Sum_probs=56.7

Q ss_pred             CCCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc--hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCC
Q 027659           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGN  134 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~  134 (220)
                      |..++||++|=-|++.|+   ++..+++.|++|+++|.  ++.++.+.+.++.++             .++.+...|..+
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~D~~~   79 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG-------------SDAACVKANVGV   79 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTC
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC-------------CceeeEeCCCCC
Confidence            345789999999998875   45566677999999986  346666666665553             467888888776


Q ss_pred             CCCcc-------ccCCCccEEEEecC
Q 027659          135 EDHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       135 ~~~~~-------~~~~~fD~V~~~d~  153 (220)
                      .+...       ...+..|+++.+.-
T Consensus        80 ~~~v~~~~~~~~~~~g~idilV~nag  105 (272)
T d1g0oa_          80 VEDIVRMFEEAVKIFGKLDIVCSNSG  105 (272)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCCccccccc
Confidence            54321       12357899988765

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.32  E-value=0.0062  Score=47.53  Aligned_cols=45  Identities=11%  Similarity=-0.008  Sum_probs=39.4

Q ss_pred             CCCCcEEEeCCcccHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHH
Q 027659           63 LKGKRVIELGAGCGVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEW  107 (220)
Q Consensus        63 ~~~~~vLELGcG~G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~  107 (220)
                      .+|..|||--||+|..++++..+|-+.+++|+ ++.++.+++.+..
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHh
Confidence            37789999999999999999999999999999 6788888766543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.14  E-value=0.018  Score=40.57  Aligned_cols=94  Identities=23%  Similarity=0.193  Sum_probs=55.3

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC-
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH-  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~-  137 (220)
                      ..+|.+||=.|||+ |+..+.+++ .|++|+++|. ++-++.+++    .+.             . .  ..+..+... 
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga-------------~-~--~~~~~~~~~~   84 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGA-------------D-L--VVNPLKEDAA   84 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC-------------S-E--EECTTTSCHH
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCc-------------c-e--ecccccchhh
Confidence            44788999999998 888887775 5789999997 444554433    332             1 1  111122110 


Q ss_pred             --ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          138 --IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       138 --~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                        .......+|.++-..+     ....+....++++++|.+++..
T Consensus        85 ~~~~~~~~~~~~~v~~~~-----~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          85 KFMKEKVGGVHAAVVTAV-----SKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             HHHHHHHSSEEEEEESSC-----CHHHHHHHHHHEEEEEEEEECC
T ss_pred             hhcccccCCCceEEeecC-----CHHHHHHHHHHhccCCceEecc
Confidence              1111223444442211     3456777888899999988763

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.013  Score=46.21  Aligned_cols=39  Identities=26%  Similarity=0.203  Sum_probs=31.5

Q ss_pred             CcEEEeCCcccHHHHHHHHhCC--e-EEEecc-hhhHHHHHHH
Q 027659           66 KRVIELGAGCGVAGFGMALLGC--N-VITTDQ-IEVLPLLKRN  104 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~~g~--~-v~~~D~-~~~l~~~~~n  104 (220)
                      .+|+||-||.|-.++.+-..|.  + |.++|. +.+++..+.|
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n   45 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN   45 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH
Confidence            5799999999998888877785  5 568898 5687877766

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.82  E-value=0.037  Score=39.44  Aligned_cols=94  Identities=17%  Similarity=0.187  Sum_probs=57.5

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCe-EEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCN-VITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~-v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+|.+||=+|||. |+.++.+|+ .|++ |+++|. ++-++.+++    .+.              ..+..  -.+...
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~Ga--------------~~~i~--~~~~~~   85 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----LGA--------------THVIN--SKTQDP   85 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----HTC--------------SEEEE--TTTSCH
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----cCC--------------eEEEe--CCCcCH
Confidence            44788999999987 777777775 5775 677787 445555543    221              12221  112110


Q ss_pred             ---c-cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          138 ---I-KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       138 ---~-~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                         . ...++.||+|+-+--     ....++...++++|+|++.+..
T Consensus        86 ~~~i~~~t~gg~D~vid~~G-----~~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          86 VAAIKEITDGGVNFALESTG-----SPEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HHHHHHHTTSCEEEEEECSC-----CHHHHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHcCCCCcEEEEcCC-----cHHHHHHHHhcccCceEEEEEe
Confidence               0 112457998884422     4566777788899999988754

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.59  E-value=0.036  Score=42.28  Aligned_cols=80  Identities=18%  Similarity=0.172  Sum_probs=55.8

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+.....           ..++.+...|..+.+..
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~-----------~~~~~~~~~Dvt~~~~v   70 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP-----------DAEVLTTVADVSDEAQV   70 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT-----------TCCEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-----------CCeEEEEeccCCCHHHH
Confidence            478999999998775   45666778999999998 5566666655544432           35778888888776542


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ..-++.|+++.|--
T Consensus        71 ~~~~~~~~~~~G~iDiLVnnAG   92 (258)
T d1iy8a_          71 EAYVTATTERFGRIDGFFNNAG   92 (258)
T ss_dssp             HHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHhCCCCEEEECCc
Confidence            1       11257899988753

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.12  Score=38.98  Aligned_cols=80  Identities=18%  Similarity=0.214  Sum_probs=57.9

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..+.|+.+|=-|++.|+   ++..+++.|++|+++|. .+-++.+...+...             ..++.....|..+.+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~-------------~~~~~~~~~Dvs~~~   69 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL-------------GAKVHTFVVDCSNRE   69 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-------------TCCEEEEECCTTCHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-------------CCcEEEEEeeCCCHH
Confidence            45789999999998876   44555677999999998 56677776666543             247888888887765


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ...+..|+++.+--
T Consensus        70 ~v~~~~~~i~~~~g~idilinnag   93 (244)
T d1yb1a_          70 DIYSSAKKVKAEIGDVSILVNNAG   93 (244)
T ss_dssp             HHHHHHHHHHHHTCCCSEEEECCC
T ss_pred             HHHHHHHHHHHHcCCCceeEeecc
Confidence            321       23457899887765

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.044  Score=41.61  Aligned_cols=87  Identities=17%  Similarity=0.172  Sum_probs=56.1

Q ss_pred             CCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      .||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+.....           ..++.+...|..+.+...
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~-----------~~~~~~~~~Dv~~~~~v~   70 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE-----------PQKTLFIQCDVADQQQLR   70 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC-----------GGGEEEEECCTTSHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC-----------CCcEEEEEeecCCHHHHH
Confidence            68889999987765   23344566999999998 5555555444432211           346788888887754321


Q ss_pred             -------ccCCCccEEEEecC-CCCCChHH
Q 027659          140 -------AVAPPFDYIIGTDV-YAEHLLEP  161 (220)
Q Consensus       140 -------~~~~~fD~V~~~d~-y~~~~~~~  161 (220)
                             ..-++.|+++.+-- .....++.
T Consensus        71 ~~~~~~~~~~G~iDilVnnAg~~~~~~~~~  100 (254)
T d2gdza1          71 DTFRKVVDHFGRLDILVNNAGVNNEKNWEK  100 (254)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCSSSHHH
T ss_pred             HHHHHHHHHcCCcCeecccccccccccchh
Confidence                   11257999998877 66665554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.25  E-value=0.067  Score=38.22  Aligned_cols=93  Identities=23%  Similarity=0.216  Sum_probs=56.5

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-  136 (220)
                      ..+|.+||=+|||. |+..+.+|+ .|+ +|+++|. ++-++.+++.    +.             . .+.  +-.+.. 
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga-------------~-~vi--~~~~~~~   85 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GA-------------D-LTL--NRRETSV   85 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TC-------------S-EEE--ETTTSCH
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cc-------------e-EEE--eccccch
Confidence            44788999999997 888888886 587 6999998 5566655432    21             1 111  111111 


Q ss_pred             -C----cc--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          137 -H----IK--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       137 -~----~~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                       +    ..  .....+|+|+-+- -.    +..++...++++++|++++.
T Consensus        86 ~~~~~~i~~~~~~~g~Dvvid~v-G~----~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          86 EERRKAIMDITHGRGADFILEAT-GD----SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             HHHHHHHHHHTTTSCEEEEEECS-SC----TTHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHHhhCCCCceEEeecC-Cc----hhHHHHHHHHhcCCCEEEEE
Confidence             0    00  1234699988332 22    23456667788999998765

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.11  E-value=0.041  Score=41.98  Aligned_cols=77  Identities=18%  Similarity=0.219  Sum_probs=54.2

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+             .++.+...|..+.+..
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~~~~~v   69 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG-------------VEARSYVCDVTSEEAV   69 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-------------SCEEEEECCTTCHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHHHH
Confidence            589999999988765   44556677999999998 556776666665443             4678888888775432


Q ss_pred             c-------ccCCCccEEEEec
Q 027659          139 K-------AVAPPFDYIIGTD  152 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d  152 (220)
                      .       ..-+..|+++.+-
T Consensus        70 ~~~~~~~~~~~g~iDilVnna   90 (260)
T d1zema1          70 IGTVDSVVRDFGKIDFLFNNA   90 (260)
T ss_dssp             HHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHhCCCCeehhhh
Confidence            1       1125789998764

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.98  E-value=0.054  Score=38.42  Aligned_cols=100  Identities=17%  Similarity=0.034  Sum_probs=54.7

Q ss_pred             CcEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++|-=+|+|.  ..++..+++.|.+|++.|. ++-++.++.+-. +..    ..+    .............  .....-
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~----~~~----~~~~~~~~~~~~~--~~~e~~   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGA-IIA----EGP----GLAGTAHPDLLTS--DIGLAV   70 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTS-EEE----ESS----SCCEEECCSEEES--CHHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC-Cch----hhh----hhhhhhhhhhhhh--hhHhHh
Confidence            5677789987  3355556677999999998 554444432211 000    000    0011111100000  011112


Q ss_pred             CCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEE
Q 027659          143 PPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILL  178 (220)
Q Consensus       143 ~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i  178 (220)
                      ..+|+|+.+-.  ......+++.+..+++++..+++
T Consensus        71 ~~aD~iii~v~--~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          71 KDADVILIVVP--AIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             TTCSEEEECSC--GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             cCCCEEEEEEc--hhHHHHHHHHhhhccCCCCEEEE
Confidence            57899997755  23467888989999998886554

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.96  E-value=0.074  Score=40.44  Aligned_cols=79  Identities=15%  Similarity=0.101  Sum_probs=54.0

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      +++||++|=.|+..|+   ++..+++.|++|+++|. ++-++.+.+.+...+             .++.+...|..+.+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~-------------~~~~~~~~D~s~~~~   69 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG-------------LNVEGSVCDLLSRTE   69 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEEeecCCHHH
Confidence            4689999999998764   34455677999999998 455666655555443             467778888877653


Q ss_pred             cc--------ccCCCccEEEEecC
Q 027659          138 IK--------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~--------~~~~~fD~V~~~d~  153 (220)
                      ..        ......|+++.+.-
T Consensus        70 ~~~~~~~~~~~~~g~idilinnag   93 (258)
T d1ae1a_          70 RDKLMQTVAHVFDGKLNILVNNAG   93 (258)
T ss_dssp             HHHHHHHHHHHTTSCCCEEEECCC
T ss_pred             HHHHHHHHHHHhCCCcEEEecccc
Confidence            21        12356888887654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.70  E-value=0.042  Score=42.16  Aligned_cols=81  Identities=21%  Similarity=0.181  Sum_probs=56.2

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+.          ...++.+...|..+.+..
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~----------~~~~~~~~~~Dvs~~~~v   72 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV----------SEKQVNSVVADVTTEDGQ   72 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----------CCCceEEEEccCCCHHHH
Confidence            689999999988764   34455677999999998 5577777766665432          134688888888775532


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ..-++.|+++.+--
T Consensus        73 ~~~~~~~~~~~g~iDilvnnAG   94 (272)
T d1xkqa_          73 DQIINSTLKQFGKIDVLVNNAG   94 (272)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHhCCceEEEeCCc
Confidence            1       11257899998743

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.67  E-value=0.046  Score=42.01  Aligned_cols=80  Identities=24%  Similarity=0.218  Sum_probs=56.2

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.+...+..          ..++.+...|..+....
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~----------~~~~~~~~~Dv~~~~~v   71 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVP----------AEKINAVVADVTEASGQ   71 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC----------GGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCC----------CcceEEEEeeCCCHHHH
Confidence            478999999998875   34455567999999998 55777777777665431          24688888888776532


Q ss_pred             c-------ccCCCccEEEEec
Q 027659          139 K-------AVAPPFDYIIGTD  152 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d  152 (220)
                      .       ..-++.|+++.+-
T Consensus        72 ~~~~~~~~~~~G~iDilVnnA   92 (274)
T d1xhla_          72 DDIINTTLAKFGKIDILVNNA   92 (274)
T ss_dssp             HHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHcCCceEEEeec
Confidence            1       1125789999874

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.60  E-value=0.084  Score=39.94  Aligned_cols=80  Identities=19%  Similarity=0.278  Sum_probs=52.7

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      +++||++|=-|++.|+   .+..+++.|++|+++|. .+.++.+.+.+....            ..++.+...|..+.+.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~------------g~~~~~~~~Dv~~~~~   69 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY------------GVETMAFRCDVSNYEE   69 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------CCCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh------------CCcEEEEEccCCCHHH
Confidence            4689999999998765   34455677999999997 455544444443222            2467778888776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+--
T Consensus        70 v~~~~~~~~~~~g~iDiLVnnAG   92 (251)
T d1vl8a_          70 VKKLLEAVKEKFGKLDTVVNAAG   92 (251)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCC
Confidence            21       11257899998754

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.54  E-value=0.081  Score=40.24  Aligned_cols=80  Identities=16%  Similarity=0.028  Sum_probs=55.0

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .+++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+...+...+             .++.....|..+.+
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~-------------~~~~~~~~Dv~~~~   70 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG-------------FQVTGSVCDASLRP   70 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CceEEEeccCCCHH
Confidence            45689999999998876   44555677999999998 456665555554432             46788887776654


Q ss_pred             Ccc--------ccCCCccEEEEecC
Q 027659          137 HIK--------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~--------~~~~~fD~V~~~d~  153 (220)
                      ...        ...+..|+++.+.-
T Consensus        71 ~v~~~~~~~~~~~~g~idilvnnAG   95 (259)
T d1xq1a_          71 EREKLMQTVSSMFGGKLDILINNLG   95 (259)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             HHHHHHHHHHHHhCCCccccccccc
Confidence            321        12357899998764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=93.36  E-value=0.097  Score=37.12  Aligned_cols=118  Identities=13%  Similarity=0.064  Sum_probs=63.6

Q ss_pred             CCCcEEEeCC-c-ccHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           64 KGKRVIELGA-G-CGVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        64 ~~~~vLELGc-G-~G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++.+||=-|+ | .|..++-+|+ .|++|++|.- ++-.+.+++.    +.             ...+..-++.......
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Ga-------------d~vi~~~~~~~~~~~~   85 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GA-------------SEVISREDVYDGTLKA   85 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TC-------------SEEEEHHHHCSSCCCS
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----cc-------------cceEeccchhchhhhc
Confidence            4557887775 3 3777777775 5999999987 4445554332    21             1111111211111111


Q ss_pred             ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEe
Q 027659          140 AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       140 ~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v  204 (220)
                      ...+.+|+|+-+      .-.+.+....+.|+++|++++....-.....-.+...+.++.++.-+
T Consensus        86 ~~~~gvd~vid~------vgg~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~  144 (167)
T d1tt7a2          86 LSKQQWQGAVDP------VGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGI  144 (167)
T ss_dssp             SCCCCEEEEEES------CCTHHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEEC
T ss_pred             ccCCCceEEEec------CcHHHHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEE
Confidence            235678988733      23345667778899999988765433222111233344455555443

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=93.26  E-value=0.12  Score=39.27  Aligned_cols=80  Identities=15%  Similarity=0.119  Sum_probs=54.1

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .+++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+...+             .++.+...|..+.+
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g-------------~~~~~~~~Dv~~~~   70 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG-------------FKVEASVCDLSSRS   70 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CEEEEEECCTTCHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CCceEEEeeCCCHH
Confidence            35689999999998765   34455567999999998 456666655554432             46777777776654


Q ss_pred             Ccc--------ccCCCccEEEEecC
Q 027659          137 HIK--------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~--------~~~~~fD~V~~~d~  153 (220)
                      ...        ....+.|+++.+.-
T Consensus        71 ~v~~~~~~~~~~~~~~idilvnnAG   95 (259)
T d2ae2a_          71 ERQELMNTVANHFHGKLNILVNNAG   95 (259)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCceEEEECCc
Confidence            321        12347899998754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.14  E-value=0.15  Score=39.15  Aligned_cols=82  Identities=21%  Similarity=0.357  Sum_probs=53.1

Q ss_pred             CCCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      +..++||++|=-|+..|+   ++..+++.|++|+++|. ++.++.+.+.+....            ..++.+...|..+.
T Consensus        20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~------------g~~~~~~~~D~~~~   87 (294)
T d1w6ua_          20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT------------GNKVHAIQCDVRDP   87 (294)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH------------SSCEEEEECCTTCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc------------CCceEEEEecccCh
Confidence            457899999999987763   33344566999999998 455554444433221            24667777776665


Q ss_pred             CCcc-------ccCCCccEEEEecC
Q 027659          136 DHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d~  153 (220)
                      +...       ......|+++.+.-
T Consensus        88 ~~v~~~~~~~~~~~g~iDilvnnAg  112 (294)
T d1w6ua_          88 DMVQNTVSELIKVAGHPNIVINNAA  112 (294)
T ss_dssp             HHHHHHHHHHHHHTCSCSEEEECCC
T ss_pred             HHHHHHhhhhhhhccccchhhhhhh
Confidence            4321       22467899988765

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.04  E-value=0.21  Score=34.81  Aligned_cols=86  Identities=10%  Similarity=0.078  Sum_probs=51.4

Q ss_pred             cEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccCC
Q 027659           67 RVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVAP  143 (220)
Q Consensus        67 ~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~~  143 (220)
                      +|.=+|+|.  +.++..+.+.|.+|++.|. ++.++.+++    ++.              +....   .+.+    .-.
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~----~~~--------------~~~~~---~~~~----~~~   56 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE----RQL--------------VDEAG---QDLS----LLQ   56 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTS--------------CSEEE---SCGG----GGT
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH----hhc--------------cceee---eecc----ccc
Confidence            566678875  3355566667999999997 455554432    221              11111   1111    235


Q ss_pred             CccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          144 PFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       144 ~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ..|+|+.+-+  ....+.+++.+...++++..+.-+
T Consensus        57 ~~DiIilavp--~~~~~~vl~~l~~~l~~~~iv~~~   90 (165)
T d2f1ka2          57 TAKIIFLCTP--IQLILPTLEKLIPHLSPTAIVTDV   90 (165)
T ss_dssp             TCSEEEECSC--HHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred             ccccccccCc--Hhhhhhhhhhhhhhcccccceeec
Confidence            7899987655  344677888888788888766543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.02  E-value=0.11  Score=39.32  Aligned_cols=79  Identities=15%  Similarity=0.194  Sum_probs=53.2

Q ss_pred             CCCCCcEEEeCCccc---HHHHHHHHhCCeEEEecc--hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCG---VAGFGMALLGCNVITTDQ--IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G---~~~l~la~~g~~v~~~D~--~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      .+.||++|=-|++.|   .++..+++.|++|++++.  .+.++.+...+..++             .++.+...|..+.+
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g-------------~~~~~~~~D~~~~~   69 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG-------------AQGVAIQADISKPS   69 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC-------------CCceEecCCCCCHH
Confidence            458999999997765   344455567999888754  346677777766554             47788888876654


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ...+..|+++.+--
T Consensus        70 ~v~~~~~~~~~~~g~idilinnag   93 (259)
T d1ja9a_          70 EVVALFDKAVSHFGGLDFVMSNSG   93 (259)
T ss_dssp             HHHHHHHHHHHHHSCEEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCcEEEeccc
Confidence            321       12357898888766

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.12  Score=40.04  Aligned_cols=86  Identities=17%  Similarity=0.308  Sum_probs=56.6

Q ss_pred             CCCCCCCcEEEeCCcccHH---HHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           60 PSKLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~~---~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      |..++||.+|=-|++.|+-   +..+++.|++|+++|. .+-++.+.+.+..+...        ....++.+...|..+.
T Consensus         7 ~g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~--------~~~~~~~~~~~Dvs~~   78 (297)
T d1yxma1           7 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP--------TKQARVIPIQCNIRNE   78 (297)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT--------TCCCCEEEEECCTTCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc--------ccCceEEEEeccCCCH
Confidence            5678999999999887652   3344566999999998 45665555555433210        1135788888887776


Q ss_pred             CCcc-------ccCCCccEEEEecC
Q 027659          136 DHIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d~  153 (220)
                      +...       ...++.|+++.+.-
T Consensus        79 ~~v~~~~~~~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          79 EEVNNLVKSTLDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHHhCCeEEEEeecc
Confidence            5321       12357899998765

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.83  E-value=0.096  Score=39.57  Aligned_cols=80  Identities=14%  Similarity=0.057  Sum_probs=54.1

Q ss_pred             CCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..++||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+...++..+             .++.+...|..+.+
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-------------~~~~~~~~Dvt~~~   72 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-------------YESSGYAGDVSKKE   72 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-------------CCEEEEECCTTCHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHH
Confidence            34689999999987763   23334456899999998 456666666665432             46788888887754


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ..-++.|+++.+..
T Consensus        73 ~v~~~~~~~~~~~g~iDilvnnag   96 (251)
T d2c07a1          73 EISEVINKILTEHKNVDILVNNAG   96 (251)
T ss_dssp             HHHHHHHHHHHHCSCCCEEEECCC
T ss_pred             HHHHHHHHHHHhcCCceeeeeccc
Confidence            321       12368999988765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.80  E-value=0.25  Score=34.46  Aligned_cols=107  Identities=11%  Similarity=0.101  Sum_probs=59.6

Q ss_pred             cEEEeCCcc--cHHHHHHHHhCC--eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcccc
Q 027659           67 RVIELGAGC--GVAGFGMALLGC--NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAV  141 (220)
Q Consensus        67 ~vLELGcG~--G~~~l~la~~g~--~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~  141 (220)
                      +|+=+|||.  |.++..+.+.|.  +|++.|. ++.++.++.+    +.              +....   ....  ...
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~--------------~~~~~---~~~~--~~~   59 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI--------------IDEGT---TSIA--KVE   59 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS--------------CSEEE---SCGG--GGG
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc--------------chhhh---hhhh--hhh
Confidence            577788875  334445555564  6999998 5566555432    11              11111   1111  112


Q ss_pred             CCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCC
Q 027659          142 APPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNF  199 (220)
Q Consensus       142 ~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f  199 (220)
                      ....|+|+.+-+  ......++..+...++++..+.-+...... ..+.+.+.+...|
T Consensus        60 ~~~~dlIila~p--~~~~~~vl~~l~~~~~~~~ii~d~~s~k~~-~~~~~~~~~~~~~  114 (171)
T d2g5ca2          60 DFSPDFVMLSSP--VRTFREIAKKLSYILSEDATVTDQGSVKGK-LVYDLENILGKRF  114 (171)
T ss_dssp             GTCCSEEEECSC--HHHHHHHHHHHHHHSCTTCEEEECCSCCTH-HHHHHHHHHGGGE
T ss_pred             ccccccccccCC--chhhhhhhhhhhccccccccccccccccHH-HHHHHHHhhcccc
Confidence            346899987766  344677788888888888766554443332 3344444444443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.72  E-value=0.19  Score=35.06  Aligned_cols=41  Identities=27%  Similarity=0.276  Sum_probs=31.5

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCCeEEEecc-hhhHHHHH
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLK  102 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~  102 (220)
                      ..+|.+||=+|||. |+..+.+++ .|++|+++|. ++-++.++
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~   68 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR   68 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence            44678899899997 888888886 5889999997 45555544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.71  E-value=0.079  Score=40.32  Aligned_cols=80  Identities=16%  Similarity=0.150  Sum_probs=54.7

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++||.+|=-|++.|+   ++..+++.|++|+++|. .+.++.+...+...+.          ...++.+...|..+....
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~----------~~~~~~~~~~Dvt~~~~v   72 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV----------SEQNVNSVVADVTTDAGQ   72 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----------CGGGEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----------CcCceEEEEccCCCHHHH
Confidence            588999999988765   33445567999999998 5577777666665432          134688888888766532


Q ss_pred             c-------ccCCCccEEEEec
Q 027659          139 K-------AVAPPFDYIIGTD  152 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d  152 (220)
                      .       ..-++.|+++.+-
T Consensus        73 ~~~~~~~~~~~g~iDilvnnA   93 (264)
T d1spxa_          73 DEILSTTLGKFGKLDILVNNA   93 (264)
T ss_dssp             HHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHhCCCCEeeccc
Confidence            1       1125789988764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.70  E-value=0.081  Score=40.13  Aligned_cols=79  Identities=22%  Similarity=0.321  Sum_probs=53.4

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.++..+             .++.+...|..+.+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-------------~~~~~~~~Dvs~~~~   74 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------------GQAFACRCDITSEQE   74 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------CcEEEEEccCCCHHH
Confidence            3589999999987765   23344566999999997 556666666665432             467788888776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+.-
T Consensus        75 ~~~~~~~~~~~~g~iDilvnnAG   97 (255)
T d1fmca_          75 LSALADFAISKLGKVDILVNNAG   97 (255)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCCCEeeeCCc
Confidence            21       11257899988754

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.68  E-value=0.096  Score=39.72  Aligned_cols=80  Identities=20%  Similarity=0.143  Sum_probs=52.4

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++-+..+.+.+....            ..++.+...|..+.+.
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~------------g~~~~~~~~Dv~~~~~   73 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEF------------GVKTKAYQCDVSNTDI   73 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHH------------TCCEEEEECCTTCHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHh------------CCceEEEEccCCCHHH
Confidence            5689999999987765   34455667999999997 444444433332221            2467888888777653


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+.-
T Consensus        74 v~~~~~~~~~~~g~iDilVnnAg   96 (260)
T d1h5qa_          74 VTKTIQQIDADLGPISGLIANAG   96 (260)
T ss_dssp             HHHHHHHHHHHSCSEEEEEECCC
T ss_pred             HHHHHHHHHHHhCCCcEeccccc
Confidence            21       12367999888765

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=92.65  E-value=0.086  Score=37.59  Aligned_cols=96  Identities=17%  Similarity=0.153  Sum_probs=59.0

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+|.+||=+|||. |+.++.+++ .|+ +|+++|. ++-++.+++    .+.             . .+.  +....+
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~----~Ga-------------~-~~i--~~~~~~   84 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGA-------------T-DCL--NPRELD   84 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC-------------S-EEE--CGGGCS
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH----hCC-------------C-ccc--CCccch
Confidence            345788999999998 999999987 477 5889998 444444443    221             1 111  111111


Q ss_pred             Cc------cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCC-cEEEEEEE
Q 027659          137 HI------KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPK-TTILLGYE  181 (220)
Q Consensus       137 ~~------~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~-g~~~i~~~  181 (220)
                      ..      ......+|+|+-+     .-.+..+....+.++++ |++++...
T Consensus        85 ~~~~~~~~~~~~~G~d~vie~-----~G~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          85 KPVQDVITELTAGGVDYSLDC-----AGTAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             SCHHHHHHHHHTSCBSEEEES-----SCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             hhhhhhHhhhhcCCCcEEEEe-----cccchHHHHHHHHhhcCCeEEEecCC
Confidence            00      0124678998743     22455677777788885 88877654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=92.61  E-value=0.11  Score=39.45  Aligned_cols=79  Identities=13%  Similarity=0.181  Sum_probs=53.6

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecch--hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQI--EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~--~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ++||.+|=-|++.|+   .+..+++.|++|+++|..  +.++.+...+....            ..++.+...|..+.+.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~------------g~~~~~~~~Dv~~~~~   69 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQH------------GVKVLYDGADLSKGEA   69 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHH------------TSCEEEECCCTTSHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhc------------CCcEEEEECCCCCHHH
Confidence            478899988988765   444566779999999973  35666666554432            2467888888877653


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.|--
T Consensus        70 v~~~~~~~~~~~G~iDiLVnnAG   92 (260)
T d1x1ta1          70 VRGLVDNAVRQMGRIDILVNNAG   92 (260)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCC
T ss_pred             HHHHHHHHHHHhCCCcEEEeecc
Confidence            21       11257899987754

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.57  E-value=0.076  Score=40.51  Aligned_cols=78  Identities=19%  Similarity=0.215  Sum_probs=50.5

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+...+..              ...+.+...|..+.+.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~--------------~~~~~~~~~Dv~~~~~   68 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS--------------PDVISFVHCDVTKDED   68 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--------------TTTEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC--------------CCceEEEEccCCCHHH
Confidence            4689999999998775   23344566999999998 4445444433321              2457777888776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+--
T Consensus        69 v~~~~~~~~~~~g~iD~lVnnAG   91 (268)
T d2bgka1          69 VRNLVDTTIAKHGKLDIMFGNVG   91 (268)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCcceeccccc
Confidence            21       11357899987653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.56  E-value=0.1  Score=37.87  Aligned_cols=99  Identities=21%  Similarity=0.147  Sum_probs=60.0

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+|.+||-+|||. |+.++.+|+ .|+ +|+++|. ++-++.+++.    +.             . .+..  -.+..
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga-------------~-~~~~--~~~~~   81 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GF-------------E-IADL--SLDTP   81 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC-------------E-EEET--TSSSC
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----cc-------------c-EEEe--CCCcC
Confidence            345788999999998 888888885 466 6999997 4556655432    21             1 1110  01100


Q ss_pred             C---cc--ccCCCccEEEEecCC----------CCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          137 H---IK--AVAPPFDYIIGTDVY----------AEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       137 ~---~~--~~~~~fD~V~~~d~y----------~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      .   ..  .....+|+++-+--.          ........++...++++|+|++.+.
T Consensus        82 ~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          82 LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             HHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            0   00  124568988843111          1122456788888999999998876

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.07  E-value=0.3  Score=34.90  Aligned_cols=101  Identities=13%  Similarity=-0.021  Sum_probs=51.7

Q ss_pred             CCCCCcEEEeCCc---ccHHHHHHHH-hCCeEEEec-chhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAG---CGVAGFGMAL-LGCNVITTD-QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG---~G~~~l~la~-~g~~v~~~D-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ..+|.+||=+.+|   .|..++.+|+ .|++|+++- .++-.+...+.++..+..           .-+.....++.+..
T Consensus        26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad-----------~vi~~~~~~~~~~~   94 (189)
T d1gu7a2          26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT-----------QVITEDQNNSREFG   94 (189)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS-----------EEEEHHHHHCGGGH
T ss_pred             CCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc-----------EEEeccccchhHHH
Confidence            4467778877333   3667776775 599987763 333333333334444320           01111111111111


Q ss_pred             C-c----cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          137 H-I----KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       137 ~-~----~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      . .    ......+|+|+  |+    .-.+.+....++|+++|+++..
T Consensus        95 ~~v~~~~~~~g~~vdvv~--D~----vg~~~~~~~~~~l~~~G~~v~~  136 (189)
T d1gu7a2          95 PTIKEWIKQSGGEAKLAL--NC----VGGKSSTGIARKLNNNGLMLTY  136 (189)
T ss_dssp             HHHHHHHHHHTCCEEEEE--ES----SCHHHHHHHHHTSCTTCEEEEC
T ss_pred             HHHHHHHhhccCCceEEE--EC----CCcchhhhhhhhhcCCcEEEEE
Confidence            0 0    01245688888  33    1233456667889999998764

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=91.77  E-value=0.4  Score=38.09  Aligned_cols=41  Identities=22%  Similarity=0.204  Sum_probs=28.0

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh---------CCeEEEecchhhHHHHHHH
Q 027659           64 KGKRVIELGAGCGVAGFGMALL---------GCNVITTDQIEVLPLLKRN  104 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~---------g~~v~~~D~~~~l~~~~~n  104 (220)
                      ...+|+|+|+|.|.++.-+...         ..+++.++.+..+...+++
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~  128 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQT  128 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHH
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHH
Confidence            3457999999999987755432         1257888886655555544

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.76  E-value=0.061  Score=37.90  Aligned_cols=95  Identities=18%  Similarity=0.165  Sum_probs=56.0

Q ss_pred             CCCCCCcEEEeCC-cc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           61 SKLKGKRVIELGA-GC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        61 ~~~~~~~vLELGc-G~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      ...++.+||=+|| |. |++.+.+++ .|. +|+++|. ++-++.+++    .+.             . .+.  +..+.
T Consensus        24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~----~Ga-------------~-~~i--~~~~~   83 (170)
T d1jvba2          24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----AGA-------------D-YVI--NASMQ   83 (170)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----HTC-------------S-EEE--ETTTS
T ss_pred             CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH----cCC-------------c-eee--ccCCc
Confidence            3457789999997 43 777776664 564 6999997 445555543    221             1 111  11211


Q ss_pred             CCcc-----ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          136 DHIK-----AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       136 ~~~~-----~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ....     .....||+|+-+-.     -...++...++++|+|++++..
T Consensus        84 ~~~~~~~~~~~~~~~d~vid~~g-----~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          84 DPLAEIRRITESKGVDAVIDLNN-----SEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CHHHHHHHHTTTSCEEEEEESCC-----CHHHHTTGGGGEEEEEEEEECC
T ss_pred             CHHHHHHHHhhcccchhhhcccc-----cchHHHhhhhhcccCCEEEEec
Confidence            1100     12456998885432     3455566677899999988763

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.51  E-value=0.12  Score=39.35  Aligned_cols=79  Identities=20%  Similarity=0.192  Sum_probs=53.7

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      +++||.+|=-|++.|+   ++..+++.|++|+++|. ++ .++.+.+.++..+             .++.+...|..+.+
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g-------------~~~~~~~~Dvt~~~   70 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG-------------GEAIAVKGDVTVES   70 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT-------------CEEEEEECCTTSHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC-------------CcEEEEEccCCCHH
Confidence            4689999999998774   33455567999999986 33 5666666555443             36777888877654


Q ss_pred             Ccc-------ccCCCccEEEEecC
Q 027659          137 HIK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~  153 (220)
                      ...       ..-++.|+++.+.-
T Consensus        71 ~v~~~~~~~~~~~G~iDiLVnnAG   94 (261)
T d1geea_          71 DVINLVQSAIKEFGKLDVMINNAG   94 (261)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHHhCCCCEeeccce
Confidence            321       11257899988765

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.23  Score=37.64  Aligned_cols=85  Identities=22%  Similarity=0.301  Sum_probs=53.5

Q ss_pred             CCCCCCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeee
Q 027659           57 RFCPSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDW  132 (220)
Q Consensus        57 ~~~~~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw  132 (220)
                      .|.|..++||++|=-|++.|+   ++..+++.|++|++++. .+.++.+...+....            ...+.....|.
T Consensus         6 ~f~~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~------------~~~~~~~~~d~   73 (269)
T d1xu9a_           6 EFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELG------------AASAHYIAGTM   73 (269)
T ss_dssp             CCCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHT------------CSEEEEEECCT
T ss_pred             cCCccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhh------------cccchhhhhhh
Confidence            345667899999999998875   34445567999999998 556666655444332            23455555544


Q ss_pred             CCCCCc-------cccCCCccEEEEecC
Q 027659          133 GNEDHI-------KAVAPPFDYIIGTDV  153 (220)
Q Consensus       133 ~~~~~~-------~~~~~~fD~V~~~d~  153 (220)
                      .+....       ....+..|+++.+..
T Consensus        74 ~~~~~~~~~~~~~~~~~g~~~~li~nag  101 (269)
T d1xu9a_          74 EDMTFAEQFVAQAGKLMGGLDMLILNHI  101 (269)
T ss_dssp             TCHHHHHHHHHHHHHHHTSCSEEEECCC
T ss_pred             hhHHHHHHHHHHHHHHhCCccccccccc
Confidence            333211       112356788887765

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.44  E-value=0.26  Score=35.06  Aligned_cols=120  Identities=11%  Similarity=-0.013  Sum_probs=63.6

Q ss_pred             CCCCCcEEEeCCcc--cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~--G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+|.+||=-|++.  |..++-+|+ .|++|+++-- ++-.+.++.    .+.            ..+-...-+|.+.. 
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~----lGa------------~~vi~~~~~~~~~~-   91 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGA------------KEVLAREDVMAERI-   91 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTC------------SEEEECC--------
T ss_pred             CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh----ccc------------ceeeecchhHHHHH-
Confidence            34678899999643  677777774 6999999986 455555542    221            11111111111111 


Q ss_pred             ccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHHhcCCeEEEe
Q 027659          138 IKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMWKSNFNVKLV  204 (220)
Q Consensus       138 ~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~~~~f~v~~v  204 (220)
                      .....+.+|+|+=+--      ...+....++|+++|+++...........-.+...+.++.++.-+
T Consensus        92 ~~~~~~gvD~vid~vg------g~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv  152 (176)
T d1xa0a2          92 RPLDKQRWAAAVDPVG------GRTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGI  152 (176)
T ss_dssp             --CCSCCEEEEEECST------TTTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEEC
T ss_pred             HHhhccCcCEEEEcCC------chhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEE
Confidence            1113568998884322      223566677899999998776543332222223334444444443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.21  E-value=0.067  Score=38.06  Aligned_cols=92  Identities=21%  Similarity=0.168  Sum_probs=53.6

Q ss_pred             CCCCCcEEEeCC-cc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGc-G~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+|.+||=.|+ |. |..++.+|+ .|++|++++. ++-.+.+++    .+.             . .+  .+..+...
T Consensus        23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga-------------~-~v--i~~~~~~~   82 (183)
T d1pqwa_          23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV-------------E-YV--GDSRSVDF   82 (183)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC-------------S-EE--EETTCSTH
T ss_pred             CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----ccc-------------c-cc--ccCCccCH
Confidence            446788998884 43 777777775 5899888875 444444442    222             1 11  12222211


Q ss_pred             ---cc--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          138 ---IK--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       138 ---~~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                         ..  .....||+|+.+- .     .+.+..+.++|+++|+++..
T Consensus        83 ~~~v~~~t~~~g~d~v~d~~-g-----~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          83 ADEILELTDGYGVDVVLNSL-A-----GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             HHHHHHHTTTCCEEEEEECC-C-----THHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHhCCCCEEEEEecc-c-----chHHHHHHHHhcCCCEEEEE
Confidence               10  1246799999432 2     23445566789999988765

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.18  E-value=0.075  Score=37.96  Aligned_cols=94  Identities=18%  Similarity=0.143  Sum_probs=57.0

Q ss_pred             CCCCCCcEEEeCCcc--cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~--G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+|.+||=.|++.  |..++.+|+ .|++|++++. ++-++.++..    +.             ...+..   .+..
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----Ga-------------~~vi~~---~~~~   85 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----GF-------------DAAFNY---KTVN   85 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----TC-------------SEEEET---TSCS
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----hh-------------hhhccc---cccc
Confidence            345788999888854  666666775 5899999986 4445444432    21             111111   1111


Q ss_pred             Cc-----cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 HI-----KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 ~~-----~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      ..     ......+|+|+-+      .-.+.++...++++++|.+++..
T Consensus        86 ~~~~~~~~~~~~Gvd~v~D~------vG~~~~~~~~~~l~~~G~~v~~G  128 (182)
T d1v3va2          86 SLEEALKKASPDGYDCYFDN------VGGEFLNTVLSQMKDFGKIAICG  128 (182)
T ss_dssp             CHHHHHHHHCTTCEEEEEES------SCHHHHHHHGGGEEEEEEEEECC
T ss_pred             HHHHHHHHhhcCCCceeEEe------cCchhhhhhhhhccCCCeEEeec
Confidence            10     1134579998843      22456778888999999988753

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=91.05  E-value=0.23  Score=39.64  Aligned_cols=25  Identities=16%  Similarity=0.044  Sum_probs=18.2

Q ss_pred             HHHHHHHHhhCCCcEEEEEEEecCc
Q 027659          161 PLLQTIFALSGPKTTILLGYEIRST  185 (220)
Q Consensus       161 ~l~~~l~~~l~~~g~~~i~~~~r~~  185 (220)
                      .+++.-.+=|.|||.+++....|..
T Consensus       190 ~FL~~Ra~ELv~GG~mvl~~~gr~~  214 (359)
T d1m6ex_         190 LFLRCRAQEVVPGGRMVLTILGRRS  214 (359)
T ss_dssp             HHHHHHHHHBCTTCEEEEEEEECSS
T ss_pred             HHHHHHHHHhcCCcEEEEEEeccCC
Confidence            4555555558999999998877653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.00  E-value=0.37  Score=33.97  Aligned_cols=95  Identities=18%  Similarity=0.168  Sum_probs=56.9

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+|.+||=+|||. |+.++.+|+ .|+ +|+++|. ++-++.+++    .+.             . .+  .+..+..
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~----lGa-------------~-~~--i~~~~~~   83 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF----YGA-------------T-DI--LNYKNGH   83 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH----HTC-------------S-EE--ECGGGSC
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh----hCc-------------c-cc--ccccchh
Confidence            344788899999997 888888887 476 5999998 444444432    221             0 11  1112211


Q ss_pred             C---cc--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          137 H---IK--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       137 ~---~~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                      .   ..  .....+|+|+-+-.     ....+....++++|+|.+.+..
T Consensus        84 ~~~~v~~~t~g~G~D~vid~~g-----~~~~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          84 IEDQVMKLTNGKGVDRVIMAGG-----GSETLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             HHHHHHHHTTTSCEEEEEECSS-----CTTHHHHHHHHEEEEEEEEECC
T ss_pred             HHHHHHHHhhccCcceEEEccC-----CHHHHHHHHHHHhcCCEEEEEe
Confidence            0   00  12346999885432     1244566667889999887753

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.74  E-value=0.29  Score=36.83  Aligned_cols=76  Identities=14%  Similarity=0.112  Sum_probs=50.8

Q ss_pred             CCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc-
Q 027659           65 GKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK-  139 (220)
Q Consensus        65 ~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~-  139 (220)
                      ||.+|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+             .++.+...|..+.+... 
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-------------~~~~~~~~Dvs~~~~v~~   68 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-------------VEADGRTCDVRSVPEIEA   68 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTCHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeecCCHHHHHH
Confidence            5666777876655   34455567999999998 556666666665443             46788888887765321 


Q ss_pred             ------ccCCCccEEEEecC
Q 027659          140 ------AVAPPFDYIIGTDV  153 (220)
Q Consensus       140 ------~~~~~fD~V~~~d~  153 (220)
                            ..-++.|+++.|--
T Consensus        69 ~~~~~~~~~g~iDilVnnAG   88 (257)
T d2rhca1          69 LVAAVVERYGPVDVLVNNAG   88 (257)
T ss_dssp             HHHHHHHHTCSCSEEEECCC
T ss_pred             HHHHHHHHhCCCCEEEeccc
Confidence                  12367899987754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.50  E-value=0.23  Score=35.07  Aligned_cols=43  Identities=16%  Similarity=0.227  Sum_probs=33.1

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHH
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKR  103 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~  103 (220)
                      ...+|.+||=+|||. |+.++.+++ .|+ +|+++|. ++-++.+++
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH
Confidence            455788999999997 888887775 576 6999998 556666654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.47  E-value=0.4  Score=35.70  Aligned_cols=75  Identities=23%  Similarity=0.349  Sum_probs=47.4

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.                 ...+.....|..+.+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-----------------~~~~~~~~~Dv~~~~~   64 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE-----------------CPGIEPVCVDLGDWDA   64 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----------------STTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------------cCCCeEEEEeCCCHHH
Confidence            3689999999988764   34455567999999997 4433332221                 1245667777766543


Q ss_pred             cc---ccCCCccEEEEecC
Q 027659          138 IK---AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~---~~~~~fD~V~~~d~  153 (220)
                      ..   ..-++.|+++.+--
T Consensus        65 v~~~~~~~g~iDilVnnAg   83 (242)
T d1cyda_          65 TEKALGGIGPVDLLVNNAA   83 (242)
T ss_dssp             HHHHHTTCCCCSEEEECCC
T ss_pred             HHHHHHHcCCCeEEEECCc
Confidence            21   12357899987754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=90.41  E-value=0.13  Score=38.75  Aligned_cols=78  Identities=22%  Similarity=0.234  Sum_probs=52.2

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+..              ..++.+...|..+.+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~--------------~~~~~~~~~Dv~~~~~   68 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT--------------PDQIQFFQHDSSDEDG   68 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC--------------TTTEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC--------------CCcEEEEEccCCCHHH
Confidence            3689999999987764   34455567999999998 4555555444321              3467888888776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+--
T Consensus        69 v~~~~~~~~~~~G~iDiLVnnAg   91 (251)
T d1zk4a1          69 WTKLFDATEKAFGPVSTLVNNAG   91 (251)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCC
T ss_pred             HHHHHHHHHHHhCCceEEEeccc
Confidence            21       11357899888765

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=90.05  E-value=0.27  Score=37.10  Aligned_cols=76  Identities=21%  Similarity=0.131  Sum_probs=49.7

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      +++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+   ++..             ..++.+...|..+.+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~---~~~~-------------~~~~~~~~~Dv~~~~~   65 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAAT---AREL-------------GDAARYQHLDVTIEED   65 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH---HHTT-------------GGGEEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH---HHHh-------------CCceEEEEcccCCHHH
Confidence            4689999999998874   34555667999999998 4433322   2221             2367888888776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+--
T Consensus        66 v~~~~~~~~~~~g~iDilVnnAg   88 (254)
T d1hdca_          66 WQRVVAYAREEFGSVDGLVNNAG   88 (254)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHcCCccEEEecCc
Confidence            21       11257898887754

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.01  E-value=0.32  Score=34.43  Aligned_cols=43  Identities=16%  Similarity=0.169  Sum_probs=33.2

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHH
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRN  104 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n  104 (220)
                      ..+|.+|+=.|||. |+.++.+++ .|+ +|+++|. ++-++.+++-
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            45788999999997 888888876 464 6999998 6677766543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.98  E-value=0.47  Score=35.35  Aligned_cols=75  Identities=25%  Similarity=0.395  Sum_probs=48.2

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++-++.+.+.   .              ..+.....|..+.+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~---~--------------~~~~~~~~Dv~d~~~   66 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE---C--------------PGIEPVCVDLGDWEA   66 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---S--------------TTCEEEECCTTCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh---c--------------CCCeEEEEeCCCHHH
Confidence            4689999999998764   34455567999999998 4444433221   1              245667777766543


Q ss_pred             cc---ccCCCccEEEEecC
Q 027659          138 IK---AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~---~~~~~fD~V~~~d~  153 (220)
                      ..   ..-++.|+++.+--
T Consensus        67 v~~~~~~~g~iDilVnnAg   85 (244)
T d1pr9a_          67 TERALGSVGPVDLLVNNAA   85 (244)
T ss_dssp             HHHHHTTCCCCCEEEECCC
T ss_pred             HHHHHHHhCCceEEEeccc
Confidence            21   12357899988765

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.85  E-value=0.36  Score=36.25  Aligned_cols=73  Identities=21%  Similarity=0.277  Sum_probs=47.9

Q ss_pred             EEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc----
Q 027659           68 VIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK----  139 (220)
Q Consensus        68 vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~----  139 (220)
                      +|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+...+             .++.+...|..+.+...    
T Consensus         4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g-------------~~~~~~~~Dv~~~~~v~~~~~   70 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-------------GHAVAVKVDVSDRDQVFAAVE   70 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------CCEEEEECCTTSHHHHHHHHH
T ss_pred             EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEeeCCCHHHHHHHHH
Confidence            4666876654   33445567999999998 556666666665443             46788888877755321    


Q ss_pred             ---ccCCCccEEEEecC
Q 027659          140 ---AVAPPFDYIIGTDV  153 (220)
Q Consensus       140 ---~~~~~fD~V~~~d~  153 (220)
                         ..-++.|+++.|--
T Consensus        71 ~~~~~~g~iDilVnnAG   87 (255)
T d1gega_          71 QARKTLGGFDVIVNNAG   87 (255)
T ss_dssp             HHHHHTTCCCEEEECCC
T ss_pred             HHHHHhCCccEEEeccc
Confidence               12367999997753

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.71  E-value=0.33  Score=34.92  Aligned_cols=43  Identities=30%  Similarity=0.394  Sum_probs=32.6

Q ss_pred             CcEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (220)
Q Consensus        66 ~~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (220)
                      ++|-=||+|+ |. .+..+|..|.+|++.|. ++.++.+++.++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~   50 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEES   50 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHH
Confidence            4688899987 32 45566678999999998 66888887777654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=89.62  E-value=0.93  Score=33.53  Aligned_cols=76  Identities=18%  Similarity=0.168  Sum_probs=48.5

Q ss_pred             CCCCCcEEEeCCcccHH---HHHHHHhCCeEEEecch-hhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGVA---GFGMALLGCNVITTDQI-EVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~~---~l~la~~g~~v~~~D~~-~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++||++|=.|++.|+-   +..+++.|++|++++.+ +.++   +.++..             ..++.+...|..+.+.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~---~~~~~~-------------~~~~~~~~~Dls~~~~   65 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLA---EAVAAL-------------EAEAIAVVADVSDPKA   65 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHTC-------------CSSEEEEECCTTSHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHHHc-------------CCceEEEEecCCCHHH
Confidence            35899999999987653   33444569999999974 3332   222221             2467778877776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+-.
T Consensus        66 i~~~~~~i~~~~g~iDiLinnAg   88 (241)
T d2a4ka1          66 VEAVFAEALEEFGRLHGVAHFAG   88 (241)
T ss_dssp             HHHHHHHHHHHHSCCCEEEEGGG
T ss_pred             HHHHHHHHHHHhCCccEeccccc
Confidence            21       11257899998755

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.46  E-value=0.36  Score=36.26  Aligned_cols=75  Identities=21%  Similarity=0.245  Sum_probs=48.8

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.                 ..++.+...|..+.+.
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-----------------~~~~~~~~~Dvs~~~~   65 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE-----------------LPGAVFILCDVTQEDD   65 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----------------CTTEEEEECCTTSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-----------------cCCCeEEEccCCCHHH
Confidence            4689999999998764   34445567999999998 4454443322                 1245677777766543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-++.|+++.+--
T Consensus        66 v~~~~~~~~~~~g~iDilVnnAG   88 (250)
T d1ydea1          66 VKTLVSETIRRFGRLDCVVNNAG   88 (250)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHhcCCCCEEEeccc
Confidence            21       11257899988764

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=89.45  E-value=0.44  Score=36.83  Aligned_cols=108  Identities=15%  Similarity=0.163  Sum_probs=67.0

Q ss_pred             CcEEEeCCcccHHHHHHHH-hCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC--Ccc---
Q 027659           66 KRVIELGAGCGVAGFGMAL-LGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED--HIK---  139 (220)
Q Consensus        66 ~~vLELGcG~G~~~l~la~-~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~--~~~---  139 (220)
                      ..|+.||||.=.-+.-+.. .+.+++=+|.+++++.=++-+..++..         ...+......|..+.-  .+.   
T Consensus        91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~---------~~~~~~~v~~Dl~~~~~~~L~~~g  161 (297)
T d2uyoa1          91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVT---------PTADRREVPIDLRQDWPPALRSAG  161 (297)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCC---------CSSEEEEEECCTTSCHHHHHHHTT
T ss_pred             CeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCC---------CCceEEEecccccchHHHHHHhcC
Confidence            3577799997554444432 244677788899888777777766541         1345566665544310  111   


Q ss_pred             ccCCCccEEEEecC--CC-CCChHHHHHHHHHhhCCCcEEEEEEEe
Q 027659          140 AVAPPFDYIIGTDV--YA-EHLLEPLLQTIFALSGPKTTILLGYEI  182 (220)
Q Consensus       140 ~~~~~fD~V~~~d~--y~-~~~~~~l~~~l~~~l~~~g~~~i~~~~  182 (220)
                      ......-++++-.+  |. .+....+++.+..+..||+.+.+-+..
T Consensus       162 ~d~~~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~~  207 (297)
T d2uyoa1         162 FDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  207 (297)
T ss_dssp             CCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCCCCCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            11233446666666  53 556889999999999999998876543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=89.18  E-value=0.44  Score=35.50  Aligned_cols=75  Identities=19%  Similarity=0.205  Sum_probs=48.6

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+.                .++.....|..+.+..
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~----------------~~~~~~~~Dv~~~~~v   65 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG----------------ANGKGLMLNVTDPASI   65 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG----------------GGEEEEECCTTCHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC----------------CCCcEEEEEecCHHHh
Confidence            588999999988765   33445566999999998 445554443321                2456667777665432


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ..-++.|+++.+--
T Consensus        66 ~~~~~~~~~~~g~iDilVnnAg   87 (243)
T d1q7ba_          66 ESVLEKIRAEFGEVDILVNNAG   87 (243)
T ss_dssp             HHHHHHHHHHTCSCSEEEECCC
T ss_pred             hhhhhhhhcccCCcceehhhhh
Confidence            1       12367999997754

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.42  E-value=0.84  Score=34.11  Aligned_cols=89  Identities=18%  Similarity=0.077  Sum_probs=52.4

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEec-chhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC-
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTD-QIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED-  136 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D-~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~-  136 (220)
                      +++||.||=-|++.|+   ++..+++.|++|++++ ..+-.+.+.+-...+.            ..++.+...|-.... 
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~------------~~~~~~~~~d~~~~~~   69 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINP------------KVNITFHTYDVTVPVA   69 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCT------------TSEEEEEECCTTSCHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCC------------CCCEEEEEeecCCCHH
Confidence            3689999999998876   2334445699877764 4432232222222221            346777777765332 


Q ss_pred             Ccc-------ccCCCccEEEEecC-CCCCChHHH
Q 027659          137 HIK-------AVAPPFDYIIGTDV-YAEHLLEPL  162 (220)
Q Consensus       137 ~~~-------~~~~~fD~V~~~d~-y~~~~~~~l  162 (220)
                      +..       ...++.|+++.+.- ...+.++..
T Consensus        70 ~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~  103 (254)
T d1sbya1          70 ESKKLLKKIFDQLKTVDILINGAGILDDHQIERT  103 (254)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCCCEEEeCCCCCCHHHHHHH
Confidence            111       11357999998877 777766653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=88.03  E-value=0.22  Score=31.73  Aligned_cols=35  Identities=20%  Similarity=0.324  Sum_probs=25.9

Q ss_pred             CCCCCCCcEEEeCC-cccHHH--HHHHHhCCeEEEecc
Q 027659           60 PSKLKGKRVIELGA-GCGVAG--FGMALLGCNVITTDQ   94 (220)
Q Consensus        60 ~~~~~~~~vLELGc-G~G~~~--l~la~~g~~v~~~D~   94 (220)
                      |...+.++|.=+|. |+|.-+  ..+..+|.+|++.|.
T Consensus         3 ~~~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~   40 (96)
T d1p3da1           3 PEMRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDI   40 (96)
T ss_dssp             CCCTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEES
T ss_pred             ccchhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeC
Confidence            45556778888885 456555  556678999999997

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=87.72  E-value=0.47  Score=35.42  Aligned_cols=77  Identities=16%  Similarity=0.213  Sum_probs=49.3

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecchhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCcc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQIEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIK  139 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~  139 (220)
                      ++||.+|=-|++.|+   ++..+++.|++|+++|..+. +.++..++..             ..++.+...|..+.....
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~-~~~~~~~~~~-------------g~~~~~~~~Dvs~~~~v~   68 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA-PEAEAAIRNL-------------GRRVLTVKCDVSQPGDVE   68 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC-HHHHHHHHHT-------------TCCEEEEECCTTCHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch-HHHHHHHHHc-------------CCcEEEEEeeCCCHHHHH
Confidence            588999999987764   34455567999999997321 2222223322             246788888877655321


Q ss_pred             -------ccCCCccEEEEecC
Q 027659          140 -------AVAPPFDYIIGTDV  153 (220)
Q Consensus       140 -------~~~~~fD~V~~~d~  153 (220)
                             ..-++.|+++.|--
T Consensus        69 ~~~~~~~~~~G~iDilVnnAG   89 (247)
T d2ew8a1          69 AFGKQVISTFGRCDILVNNAG   89 (247)
T ss_dssp             HHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHcCCCCEEEECCC
Confidence                   11357899988754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.56  E-value=0.58  Score=34.89  Aligned_cols=76  Identities=18%  Similarity=0.187  Sum_probs=50.0

Q ss_pred             CCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      .++||++|=-|++.|+   ++..+++.|++|+++|. ++.++.+.+.+   +             .++.+...|..+.+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~-------------~~~~~~~~Dv~~~~~   66 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL---A-------------DAARYVHLDVTQPAQ   66 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---G-------------GGEEEEECCTTCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---h-------------CcceEEEeecCCHHH
Confidence            4689999999998774   44455677999999998 44444433322   1             256777777776543


Q ss_pred             cc-------ccCCCccEEEEecC
Q 027659          138 IK-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       138 ~~-------~~~~~fD~V~~~d~  153 (220)
                      ..       ..-+..|+++.+.-
T Consensus        67 v~~~~~~~~~~~g~idilinnAG   89 (244)
T d1nffa_          67 WKAAVDTAVTAFGGLHVLVNNAG   89 (244)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHHhCCCeEEEECCc
Confidence            21       11257899988765

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.45  E-value=0.43  Score=35.82  Aligned_cols=75  Identities=19%  Similarity=0.202  Sum_probs=49.2

Q ss_pred             CCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           63 LKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        63 ~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      ++||++|=-|++.|+   ++..+++.|++|+++|. .+.++.+.+.   .             ..++.+...|..+.+..
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~---~-------------~~~~~~~~~Dvt~~~~v   66 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAE---I-------------GPAACAIALDVTDQASI   66 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHH---H-------------CTTEEEEECCTTCHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---h-------------CCceEEEEeeCCCHHHH
Confidence            578999999988764   34455567999999998 4444433322   1             13577778787765532


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ..-++.|+++.+.-
T Consensus        67 ~~~~~~~~~~~g~iDilVnnAg   88 (256)
T d1k2wa_          67 DRCVAELLDRWGSIDILVNNAA   88 (256)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHHHhCCccEEEeecc
Confidence            1       11257899988765

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=86.14  E-value=1.9  Score=29.10  Aligned_cols=94  Identities=17%  Similarity=0.082  Sum_probs=54.4

Q ss_pred             CcEEEeCCcc--cHHHHHHHHhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccccC
Q 027659           66 KRVIELGAGC--GVAGFGMALLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKAVA  142 (220)
Q Consensus        66 ~~vLELGcG~--G~~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~~~  142 (220)
                      ++|+=+|+|.  ++++..|++.|.+|++++. ++-...      .+..     ..    ..............    ...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~------~~~~-----~~----~~~~~~~~~~~~~~----~~~   61 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCS------VNLV-----ET----DGSIFNESLTANDP----DFL   61 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEE------EEEE-----CT----TSCEEEEEEEESCH----HHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhh------hccc-----cC----Cccccccccccchh----hhh
Confidence            4688899986  4566666778999999986 321100      0000     00    01111111111111    123


Q ss_pred             CCccEEEEecC-CCCCChHHHHHHHHHhhCCCcEEEEEEE
Q 027659          143 PPFDYIIGTDV-YAEHLLEPLLQTIFALSGPKTTILLGYE  181 (220)
Q Consensus       143 ~~fD~V~~~d~-y~~~~~~~l~~~l~~~l~~~g~~~i~~~  181 (220)
                      ..+|+|+.+-. |.   .+..++.+..++.++..++....
T Consensus        62 ~~~D~iii~vka~~---~~~~~~~l~~~~~~~~~Iv~~qN   98 (167)
T d1ks9a2          62 ATSDLLLVTLKAWQ---VSDAVKSLASTLPVTTPILLIHN   98 (167)
T ss_dssp             HTCSEEEECSCGGG---HHHHHHHHHTTSCTTSCEEEECS
T ss_pred             cccceEEEeecccc---hHHHHHhhccccCcccEEeeccC
Confidence            57999997766 53   77888888888888887776543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.92  E-value=0.92  Score=31.59  Aligned_cols=92  Identities=15%  Similarity=0.159  Sum_probs=53.9

Q ss_pred             CCCCCCcEEEeCC-cc-cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGA-GC-GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGc-G~-G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...+|.+||=.|+ |. |..++.+|+ .|++|++++. ++-++.+++    .+.            ..+    .+..+..
T Consensus        24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa------------~~~----i~~~~~~   83 (171)
T d1iz0a2          24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGA------------EEA----ATYAEVP   83 (171)
T ss_dssp             TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTC------------SEE----EEGGGHH
T ss_pred             CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----ccc------------cee----eehhhhh
Confidence            3457889999885 54 778887786 4899999886 554554443    221            111    1222211


Q ss_pred             CccccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          137 HIKAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ........+|+|+-. +-  +.    +....++++++|+++..
T Consensus        84 ~~~~~~~g~D~v~d~-~G--~~----~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          84 ERAKAWGGLDLVLEV-RG--KE----VEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             HHHHHTTSEEEEEEC-SC--TT----HHHHHTTEEEEEEEEEC
T ss_pred             hhhhccccccccccc-cc--hh----HHHHHHHHhcCCcEEEE
Confidence            111124579998852 12  12    34455689999988764

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=85.92  E-value=0.93  Score=36.40  Aligned_cols=47  Identities=17%  Similarity=0.145  Sum_probs=38.8

Q ss_pred             CCCcEEEeCCcccHHHHHHHHh----CCeEEEecc-hhhHHHHHHHHHHhhh
Q 027659           64 KGKRVIELGAGCGVAGFGMALL----GCNVITTDQ-IEVLPLLKRNVEWNTS  110 (220)
Q Consensus        64 ~~~~vLELGcG~G~~~l~la~~----g~~v~~~D~-~~~l~~~~~n~~~n~~  110 (220)
                      ++..++|+||=.|..+..++..    +.+|++.+- +...+.+++|++.|..
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            5678999999999888776643    357999997 7799999999998764

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.89  E-value=0.69  Score=32.20  Aligned_cols=94  Identities=17%  Similarity=0.108  Sum_probs=56.0

Q ss_pred             CCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+|.+||=.|||. |+..+.+++ .|+ .|+++|. ++-++.+++    .+.              ..+.  +..+...
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~----~ga--------------~~~i--~~~~~~~   89 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAER----LGA--------------DHVV--DARRDPV   89 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHH----TTC--------------SEEE--ETTSCHH
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhh----ccc--------------ceee--cCcccHH
Confidence            34678999999997 888777775 576 5888897 444454442    221              1111  1111110


Q ss_pred             ---cc-ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          138 ---IK-AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       138 ---~~-~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                         .. .....+|+|+-+-.     ....+....++++++|++++..
T Consensus        90 ~~~~~~~~~~g~d~vid~~g-----~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          90 KQVMELTRGRGVNVAMDFVG-----SQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             HHHHHHTTTCCEEEEEESSC-----CHHHHHHGGGGEEEEEEEEECC
T ss_pred             HHHHHhhCCCCceEEEEecC-----cchHHHHHHHHHhCCCEEEEEe
Confidence               00 12346888874322     3445677777899999988754

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=85.88  E-value=1.1  Score=31.63  Aligned_cols=82  Identities=15%  Similarity=0.129  Sum_probs=44.0

Q ss_pred             CCCCCCcEEEeCCcccHHHH--HHHHhCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCC
Q 027659           61 SKLKGKRVIELGAGCGVAGF--GMALLGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNED  136 (220)
Q Consensus        61 ~~~~~~~vLELGcG~G~~~l--~la~~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~  136 (220)
                      ...++++||=||||--.-++  .+++.|. +++..+. ++.++.+..-++.-..           .........+|.+..
T Consensus        14 ~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~   82 (182)
T d1vi2a1          14 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE-----------NTDCVVTVTDLADQQ   82 (182)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHH-----------HSSCEEEEEETTCHH
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHh-----------hcCcceEeeeccccc
Confidence            35688999999998522222  2334566 5888886 4444443332221111           112345566666544


Q ss_pred             CccccCCCccEEEEecC
Q 027659          137 HIKAVAPPFDYIIGTDV  153 (220)
Q Consensus       137 ~~~~~~~~fD~V~~~d~  153 (220)
                      ........+|+|+.+.+
T Consensus        83 ~~~~~~~~~diiIN~Tp   99 (182)
T d1vi2a1          83 AFAEALASADILTNGTK   99 (182)
T ss_dssp             HHHHHHHTCSEEEECSS
T ss_pred             chhhhhcccceeccccC
Confidence            33222346788887655

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=85.71  E-value=0.9  Score=30.09  Aligned_cols=87  Identities=14%  Similarity=0.138  Sum_probs=45.6

Q ss_pred             cEEEeCCcccHHHHHHH----HhCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCccc-
Q 027659           67 RVIELGAGCGVAGFGMA----LLGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHIKA-  140 (220)
Q Consensus        67 ~vLELGcG~G~~~l~la----~~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~~~-  140 (220)
                      +|+=+|+|  ..|..++    ..|.+|+++|. ++.++.++..   .               .+.+...|-.+.+.+.. 
T Consensus         2 ~IvI~G~G--~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~---~---------------~~~vi~Gd~~~~~~l~~~   61 (132)
T d1lssa_           2 YIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I---------------DALVINGDCTKIKTLEDA   61 (132)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C---------------SSEEEESCTTSHHHHHHT
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCCCcceecCChhhhhhhhhh---h---------------hhhhccCcccchhhhhhc
Confidence            56666665  5666555    34889999998 6655554322   1               23555544333322221 


Q ss_pred             cCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcE
Q 027659          141 VAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTT  175 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~  175 (220)
                      .-...|.+++.-.  .+....++..+.+.+.+...
T Consensus        62 ~i~~a~~vv~~t~--~d~~N~~~~~~~k~~~~~~i   94 (132)
T d1lssa_          62 GIEDADMYIAVTG--KEEVNLMSSLLAKSYGINKT   94 (132)
T ss_dssp             TTTTCSEEEECCS--CHHHHHHHHHHHHHTTCCCE
T ss_pred             ChhhhhhhcccCC--cHHHHHHHHHHHHHcCCceE
Confidence            2357898887543  11122233333444566643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=85.36  E-value=0.28  Score=30.85  Aligned_cols=28  Identities=18%  Similarity=0.241  Sum_probs=18.0

Q ss_pred             EEEeC-CcccHHH--HHHHHhCCeEEEecch
Q 027659           68 VIELG-AGCGVAG--FGMALLGCNVITTDQI   95 (220)
Q Consensus        68 vLELG-cG~G~~~--l~la~~g~~v~~~D~~   95 (220)
                      |-=+| ||+|.-+  ..+..+|.+|+++|..
T Consensus         4 ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~   34 (89)
T d1j6ua1           4 IHFVGIGGIGMSAVALHEFSNGNDVYGSNIE   34 (89)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEeECHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            33344 3445544  4555789999999973

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=83.50  E-value=2.1  Score=29.59  Aligned_cols=93  Identities=12%  Similarity=0.049  Sum_probs=55.0

Q ss_pred             CCCCCcEEEeCCcc--cHHHHHHHH-hCCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCC
Q 027659           62 KLKGKRVIELGAGC--GVAGFGMAL-LGCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDH  137 (220)
Q Consensus        62 ~~~~~~vLELGcG~--G~~~l~la~-~g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~  137 (220)
                      ..+|.+||=.|+|.  |...+.+|+ .|++|+++|. ++-++.+++    .+.             . .+  .|..+...
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~----lGa-------------~-~v--i~~~~~d~   85 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK----AGA-------------W-QV--INYREEDL   85 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH----HTC-------------S-EE--EETTTSCH
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh----cCC-------------e-EE--EECCCCCH
Confidence            44688999986664  777777775 5999999997 445555543    221             1 11  23233211


Q ss_pred             ---cc--ccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEEE
Q 027659          138 ---IK--AVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLGY  180 (220)
Q Consensus       138 ---~~--~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~~  180 (220)
                         ..  -....+|+|+-+--      .+.+.....+++++|.+++..
T Consensus        86 ~~~v~~~t~g~g~d~v~d~~g------~~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          86 VERLKEITGGKKVRVVYDSVG------RDTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             HHHHHHHTTTCCEEEEEECSC------GGGHHHHHHTEEEEEEEEECC
T ss_pred             HHHHHHHhCCCCeEEEEeCcc------HHHHHHHHHHHhcCCeeeecc
Confidence               11  12457898875432      123456677888998876643

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=83.41  E-value=0.9  Score=32.25  Aligned_cols=43  Identities=21%  Similarity=0.160  Sum_probs=30.2

Q ss_pred             CcEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hhhHHHHHHHHHHh
Q 027659           66 KRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IEVLPLLKRNVEWN  108 (220)
Q Consensus        66 ~~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~~l~~~~~n~~~n  108 (220)
                      ++|-=||+|+ |. .+..++..|.+|++.|. ++.++.+...+..+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~   50 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL   50 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhh
Confidence            3577799987 33 34455667999999998 66777776666544

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=83.31  E-value=1.1  Score=31.04  Aligned_cols=94  Identities=13%  Similarity=0.073  Sum_probs=54.4

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC-
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE-  135 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~-  135 (220)
                      ...+|.+||=.|||. |..++.+++ .|+ .|+++|. ++-++.+++    .+.             . .+.  +..+. 
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----lGa-------------~-~~i--~~~~~~   84 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----FGA-------------T-ECI--NPQDFS   84 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----HTC-------------S-EEE--CGGGCS
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----hCC-------------c-EEE--eCCchh
Confidence            345788999999985 666666664 576 5888897 455565553    221             0 111  11111 


Q ss_pred             CCc-----cccCCCccEEEEecCCCCCChHHHHHHHHHhhCCCcEEEEE
Q 027659          136 DHI-----KAVAPPFDYIIGTDVYAEHLLEPLLQTIFALSGPKTTILLG  179 (220)
Q Consensus       136 ~~~-----~~~~~~fD~V~~~d~y~~~~~~~l~~~l~~~l~~~g~~~i~  179 (220)
                      ...     ......+|+|+-+--     ...+++....++++++.+.+.
T Consensus        85 ~~~~~~~~~~~~~g~D~vid~~G-----~~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          85 KPIQEVLIEMTDGGVDYSFECIG-----NVKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             SCHHHHHHHHTTSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEE
T ss_pred             hHHHHHHHHHcCCCCcEeeecCC-----CHHHHHHHHHhhcCCceeEEE
Confidence            110     012457999885422     346677778888887665543

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=82.14  E-value=0.52  Score=34.78  Aligned_cols=30  Identities=37%  Similarity=0.646  Sum_probs=22.9

Q ss_pred             CCcEEEeCCcc-cHHH-HHHHHhCCeEEEecc
Q 027659           65 GKRVIELGAGC-GVAG-FGMALLGCNVITTDQ   94 (220)
Q Consensus        65 ~~~vLELGcG~-G~~~-l~la~~g~~v~~~D~   94 (220)
                      +|+|+=||+|. |+.+ ..|++.|.+|+..|-
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~   32 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEA   32 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeC
Confidence            57899999997 6543 345567889999985

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.03  E-value=0.94  Score=34.06  Aligned_cols=76  Identities=16%  Similarity=0.147  Sum_probs=47.8

Q ss_pred             CCcE-EEeCCcccH---HHHHHHHh-CCeEEEecc-hhhHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCCCCc
Q 027659           65 GKRV-IELGAGCGV---AGFGMALL-GCNVITTDQ-IEVLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNEDHI  138 (220)
Q Consensus        65 ~~~v-LELGcG~G~---~~l~la~~-g~~v~~~D~-~~~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~~~~  138 (220)
                      |++| |==|+..|+   ++..+++. |++|++++. .+-++.+.+.+...+             .++.+..+|..+.+..
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-------------~~~~~~~~Dvs~~~sv   68 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG-------------LSPRFHQLDIDDLQSI   68 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT-------------CCCEEEECCTTCHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC-------------CcEEEEEEecCCHHHH
Confidence            5676 455665554   23344555 789999997 456666655555432             4678888888776532


Q ss_pred             c-------ccCCCccEEEEecC
Q 027659          139 K-------AVAPPFDYIIGTDV  153 (220)
Q Consensus       139 ~-------~~~~~fD~V~~~d~  153 (220)
                      .       ...++.|++|.|--
T Consensus        69 ~~~~~~~~~~~g~iDiLVnNAG   90 (275)
T d1wmaa1          69 RALRDFLRKEYGGLDVLVNNAG   90 (275)
T ss_dssp             HHHHHHHHHHHSSEEEEEECCC
T ss_pred             HHHHHHHHHhcCCcEEEEEcCC
Confidence            1       12357999998764

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.77  E-value=2.6  Score=32.11  Aligned_cols=35  Identities=31%  Similarity=0.544  Sum_probs=28.1

Q ss_pred             CCCCCCCcEEEeCCcccH---HHHHHHHhCCeEEEecc
Q 027659           60 PSKLKGKRVIELGAGCGV---AGFGMALLGCNVITTDQ   94 (220)
Q Consensus        60 ~~~~~~~~vLELGcG~G~---~~l~la~~g~~v~~~D~   94 (220)
                      |-.++||.+|=-|++.|+   ++..+++.|++|+++|.
T Consensus         2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~   39 (302)
T d1gz6a_           2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDL   39 (302)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            567899999999999875   34555677999999985

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.56  E-value=3.4  Score=26.39  Aligned_cols=63  Identities=17%  Similarity=0.296  Sum_probs=37.5

Q ss_pred             ccccccchHHHHHHHHhhccccCCCCCCCCCCCcEEEeCCcc-cH-HHHHHHHhCCeEEEecc-hh--------hHHHHH
Q 027659           34 LGTTVWDASVVFVKYLEKNCRKGRFCPSKLKGKRVIELGAGC-GV-AGFGMALLGCNVITTDQ-IE--------VLPLLK  102 (220)
Q Consensus        34 ~g~~~W~~s~~l~~~l~~~~~~~~~~~~~~~~~~vLELGcG~-G~-~~l~la~~g~~v~~~D~-~~--------~l~~~~  102 (220)
                      .+.++|.+..+|.              .....++++=+|+|. |+ ++..++.+|.+|+.++. +.        +.+.++
T Consensus         5 ~~~~i~~s~~~l~--------------~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~   70 (117)
T d1ebda2           5 FSNRILDSTGALN--------------LGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIK   70 (117)
T ss_dssp             CCSSEECHHHHHT--------------CSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHH
T ss_pred             CCCCEEChhHhhC--------------hhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHHH
Confidence            3456787765553              112346899999885 43 33344467999999874 32        344455


Q ss_pred             HHHHHhhh
Q 027659          103 RNVEWNTS  110 (220)
Q Consensus       103 ~n~~~n~~  110 (220)
                      +.++.++.
T Consensus        71 ~~l~~~GI   78 (117)
T d1ebda2          71 KRLKKKGV   78 (117)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHhcCC
Confidence            55555544

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=80.70  E-value=2.3  Score=31.38  Aligned_cols=77  Identities=19%  Similarity=0.283  Sum_probs=48.1

Q ss_pred             CCCCCcEEEeCCc----ccH-HHHHHHHhCCeEEEecchh-hHHHHHHHHHHhhhhhccCCCCCCCCCceEEEEeeeCCC
Q 027659           62 KLKGKRVIELGAG----CGV-AGFGMALLGCNVITTDQIE-VLPLLKRNVEWNTSRISQMNPGSDLLGSIQAVELDWGNE  135 (220)
Q Consensus        62 ~~~~~~vLELGcG----~G~-~~l~la~~g~~v~~~D~~~-~l~~~~~n~~~n~~~~~~~~~~~~~~~~v~~~~ldw~~~  135 (220)
                      +++||++|=-|++    .|. .+..+++.|++|+++|.++ ..+.+++.....              .+..+...|..+.
T Consensus         5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~   70 (256)
T d1ulua_           5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL--------------GGALLFRADVTQD   70 (256)
T ss_dssp             CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT--------------TCCEEEECCTTCH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhcc--------------CcccccccccCCH
Confidence            5689999999964    343 5556667899999999854 555444433322              2456667666665


Q ss_pred             CCcc-------ccCCCccEEEEec
Q 027659          136 DHIK-------AVAPPFDYIIGTD  152 (220)
Q Consensus       136 ~~~~-------~~~~~fD~V~~~d  152 (220)
                      +...       ..-++.|+++.+-
T Consensus        71 ~~v~~~~~~~~~~~g~iDilVnna   94 (256)
T d1ulua_          71 EELDALFAGVKEAFGGLDYLVHAI   94 (256)
T ss_dssp             HHHHHHHHHHHHHHSSEEEEEECC
T ss_pred             HHHHHHHHHHHHhcCCceEEEecc
Confidence            4321       1135789888654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=80.21  E-value=1.9  Score=29.69  Aligned_cols=42  Identities=21%  Similarity=0.264  Sum_probs=28.6

Q ss_pred             CCCCCCcEEEeCCcc-cHHHHHHHH-hCC-eEEEecc-hhhHHHHH
Q 027659           61 SKLKGKRVIELGAGC-GVAGFGMAL-LGC-NVITTDQ-IEVLPLLK  102 (220)
Q Consensus        61 ~~~~~~~vLELGcG~-G~~~l~la~-~g~-~v~~~D~-~~~l~~~~  102 (220)
                      ...+|.+||=+|||. |+..+.+++ .++ +|+++|. ++-++.++
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~   70 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK   70 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH
Confidence            345788999999998 555554443 455 6999998 55555544

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=80.09  E-value=2  Score=31.30  Aligned_cols=59  Identities=3%  Similarity=-0.057  Sum_probs=37.2

Q ss_pred             cCCCccEEEEecCCCCC--------C-------hHHHHHHHHHhhCCCcEEEEEEEecCchHHHHHHHHH-hcCCeEE
Q 027659          141 VAPPFDYIIGTDVYAEH--------L-------LEPLLQTIFALSGPKTTILLGYEIRSTSVHEQMLQMW-KSNFNVK  202 (220)
Q Consensus       141 ~~~~fD~V~~~d~y~~~--------~-------~~~l~~~l~~~l~~~g~~~i~~~~r~~~~~~~f~~~~-~~~f~v~  202 (220)
                      +++++|+|+.+++|+..        .       ....++.+.++|+|+|.+++......   ...+...+ ..+|...
T Consensus        20 pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~---~~~~~~~~~~~g~~~~   94 (256)
T d1g60a_          20 ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFN---CAFICQYLVSKGMIFQ   94 (256)
T ss_dssp             CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHH---HHHHHHHHHHTTCEEE
T ss_pred             cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchh---hhhhhhhhhcccceee
Confidence            35789999999886532        1       33466778889999999887554322   22333333 3466653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=80.07  E-value=0.83  Score=28.41  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=24.3

Q ss_pred             CCCCCcEEEeCCcc-cHHHH-HHHHhCCeEEEecc
Q 027659           62 KLKGKRVIELGAGC-GVAGF-GMALLGCNVITTDQ   94 (220)
Q Consensus        62 ~~~~~~vLELGcG~-G~~~l-~la~~g~~v~~~D~   94 (220)
                      +++|++|+=+|-|- |.... .|++.|++|++.|.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~   36 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDT   36 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeC
Confidence            46899999999874 54322 34456999999996