Citrus Sinensis ID: 027668

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Secondary Structure (PSIPRED)
cEEcccEEEEcccccccccccccccccccccHHHHHccccccccEEEEEEcccHHHHHHHHHHHcccEEEEEccccccHHHHHHHccccEEEEcccHHHHHHHHccccEEEEcccccccHHHHHHcHHcccEEEEEccccccccccccccccccEEEEEcccccHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHccccEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEccccccHHHHHHHHcHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHccccEEEEcccccHHHHHHccccEEEEcccccccHHHHHHHHcccccEEEEcccccccccccHHHEcccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHcccEEEEEEEcHHHccccc
Coil and Loop (DISEMBL)
mvadehfvvripegapldatapllcagitvysplrfygldkpgmhvgvvGLGGLGHVAVKFAKAMGVKVTVistspskkseAVERLgadsflvsrDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGklvllgapekplelpafplltgekivggsligglkETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Flexible Loop (DISEMBL)
mvadehfvvripegapldatapLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTvistspskkseaverlgadsflvsRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Low Complexity Region (SEG)
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMhvgvvglgglghvavKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Disordered region (IsUnstruct)
*****HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVI*******************************MGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA*******
Disordered Region (DISOPRED)
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV*NT*****
Disordered Region (DISEMBL)
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Disordered Region (DISPRO)
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q9ZRF1	359	Probable mannitol dehydro	N/A	no	0.986	0.604	0.824	2e-93
P42754	337	Mannitol dehydrogenase (F	N/A	no	0.990	0.646	0.766	1e-88
Q6V4H0	360	8-hydroxygeraniol dehydro	N/A	no	0.990	0.605	0.766	2e-87
P93257	361	Probable mannitol dehydro	N/A	no	0.990	0.603	0.756	4e-85
Q02971	357	Cinnamyl alcohol dehydrog	yes	no	1.0	0.616	0.754	7e-84
Q38707	365	Mannitol dehydrogenase OS	N/A	no	0.990	0.597	0.697	1e-82
Q2KNL6	360	Geraniol dehydrogenase 1	N/A	no	0.986	0.602	0.705	1e-81
Q02972	359	Cinnamyl alcohol dehydrog	no	no	1.0	0.612	0.75	1e-80
P42734	360	Probable cinnamyl alcohol	no	no	0.981	0.6	0.680	4e-77
Q43138	363	Probable mannitol dehydro	N/A	no	0.990	0.600	0.710	3e-76

>sp|Q9ZRF1|MTDH_FRAAN Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1

 Score =  341 bits (875), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 179/217 (82%), Positives = 197/217 (90%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHF+VRIP+  PLD  APLLCAGIT YSPLR++GLDKPGMHVGVVGLGGLGHVAVK
Sbjct: 140 MVADEHFIVRIPDNLPLDGAAPLLCAGITTYSPLRYFGLDKPGMHVGVVGLGGLGHVAVK 199

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMGVKVTVISTSP K+ EA++ LGADSFLVSRDQD+MQAA+GTMDGIIDTVSA HPL
Sbjct: 200 FAKAMGVKVTVISTSPKKEEEALKHLGADSFLVSRDQDQMQAAIGTMDGIIDTVSAQHPL 259

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLIGLL S GKLV++GAPEKPLELP FPLL G K+V GS IGG+KETQEMIDFAA+HNI
Sbjct: 260 LPLIGLLNSHGKLVMVGAPEKPLELPVFPLLMGRKMVAGSGIGGMKETQEMIDFAARHNI 319

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVIP DY+NTAMERL KADVRYRFVID+ NT+K
Sbjct: 320 TADIEVIPIDYLNTAMERLVKADVRYRFVIDIGNTLK 356

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.
Fragaria ananassa (taxid: 3747)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5EC: 5

>sp|P42754|MTDH_PETCR Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1

 Score =  325 bits (834), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 167/218 (76%), Positives = 190/218 (87%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVAD+HFV+R PE  PLD+ APLLCAGIT YSPLR++GLDKPG  VGVVGLGGLGHVAVK
Sbjct: 119 MVADQHFVLRWPENLPLDSGAPLLCAGITTYSPLRYHGLDKPGTKVGVVGLGGLGHVAVK 178

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            AKA G  VTVISTS SKK EA+E+LGAD FLVS D D+MQAA GT+ GIIDTVSA+HP+
Sbjct: 179 MAKAFGAHVTVISTSESKKQEALEKLGADEFLVSSDSDQMQAATGTLHGIIDTVSALHPV 238

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+GLLK  GKLV++GAPEKPLELP FPLL G K++ GS IGGLKETQEM+DFAA+HNI
Sbjct: 239 VPLLGLLKVNGKLVMVGAPEKPLELPVFPLLMGRKVLAGSNIGGLKETQEMLDFAAQHNI 298

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
            AD+EVIP DYVNTAMERL K+DVRYRFVIDVANT+K+
Sbjct: 299 TADVEVIPVDYVNTAMERLVKSDVRYRFVIDVANTIKT 336

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.

Petroselinum crispum (taxid: 4043)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q6V4H0|10HGO_CATRO 8-hydroxygeraniol dehydrogenase OS=Catharanthus roseus GN=10HGO PE=1 SV=1

 Score =  322 bits (824), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 167/218 (76%), Positives = 193/218 (88%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHFV+R PE  P+D  APLLCAGIT YSPLR++GLDKPG HVGVVGLGGLGHVAVK
Sbjct: 142 MVADEHFVIRWPENLPMDIGAPLLCAGITTYSPLRYFGLDKPGTHVGVVGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KVTVISTS SKK EA+E+LGADSFLVSRD ++M+AA  ++DGIIDTVSA+HP+
Sbjct: 202 FAKAFGAKVTVISTSESKKQEALEKLGADSFLVSRDPEQMKAAAASLDGIIDTVSAIHPI 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           MPL+ +LKS GKL+L+GAPEKPLELP+FPL+ G KI+ GS IGGLKETQEMIDFAAKHN+
Sbjct: 262 MPLLSILKSHGKLILVGAPEKPLELPSFPLIAGRKIIAGSAIGGLKETQEMIDFAAKHNV 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
             D+E++  DYVNTAMERL KADV+YRFVIDVANT+KS
Sbjct: 322 LPDVELVSMDYVNTAMERLLKADVKYRFVIDVANTLKS 359

Dehydrogenase involved in the biosynthesis of oxogeranial from hydroxygeraniol, a precursor of the terpenoid indole alkaloids such as vinblastine and vincristine.

Catharanthus roseus (taxid: 4058)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 2

EC: 4

>sp|P93257|MTDH_MESCR Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1

 Score =  314 bits (804), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 165/218 (75%), Positives = 195/218 (89%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV +EHF VRIP+   LDATAPLLCAG+TVYSPL+ + LDKPG+H+GVVGLGGLGH+AVK
Sbjct: 143 MVVEEHFAVRIPDNMALDATAPLLCAGVTVYSPLKHFELDKPGLHIGVVGLGGLGHMAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           F KA G KVTVISTSP+KK EAV RLGADSF+VSR+ ++MQ+AMGT+DGIIDTVSA HPL
Sbjct: 203 FGKAFGAKVTVISTSPNKKDEAVNRLGADSFVVSREPEQMQSAMGTLDGIIDTVSAAHPL 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+GLLKSQGK++++G P+KPLELP FPLL G KI+ GS IGG+KETQEMIDFAAKH+I
Sbjct: 263 LPLLGLLKSQGKMIMVGVPDKPLELPVFPLLQGRKILAGSCIGGMKETQEMIDFAAKHDI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
           ++DIEV+P DYVNTAMERL K DVRYRFVIDVANT+K+
Sbjct: 323 KSDIEVVPMDYVNTAMERLLKGDVRYRFVIDVANTLKA 360

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q02971|CADH7_ARATH Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2

 Score =  310 bits (793), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 166/220 (75%), Positives = 194/220 (88%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV  E F++RIP+  PLD  APLLCAG+TVYSP++++GLDKPGMH+GVVGLGGLGHVAVK
Sbjct: 138 MVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVAVK 197

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMG KVTVISTS  K+ EAV RLGAD+FLVSRD  +M+ AMGTMDGIIDTVSA HPL
Sbjct: 198 FAKAMGTKVTVISTSERKRDEAVTRLGADAFLVSRDPKQMKDAMGTMDGIIDTVSATHPL 257

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+GLLK++GKLV++GAP +PLELP FPL+ G K+V GS++GG+KETQEM+D A KHNI
Sbjct: 258 LPLLGLLKNKGKLVMVGAPAEPLELPVFPLIFGRKMVVGSMVGGIKETQEMVDLAGKHNI 317

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
            ADIE+I ADYVNTAMERLAKADV+YRFVIDVANTMK TP
Sbjct: 318 TADIELISADYVNTAMERLAKADVKYRFVIDVANTMKPTP 357

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|Q38707|MTDH_APIGR Mannitol dehydrogenase OS=Apium graveolens GN=MTD PE=1 SV=1

 Score =  305 bits (781), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 152/218 (69%), Positives = 183/218 (83%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHF++R P+  PLD+ APLLCAGIT YSPL++YGLDKPG  +GVVGLGGLGHVAVK
Sbjct: 142 MVADEHFILRWPKNLPLDSGAPLLCAGITTYSPLKYYGLDKPGTKIGVVGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            AKA G +VTVI  S SK+ EA+E+LGADSFL++ DQ++M+ A  ++DGIIDTV   HPL
Sbjct: 202 MAKAFGAQVTVIDISESKRKEALEKLGADSFLLNSDQEQMKGARSSLDGIIDTVPVNHPL 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
            PL  LLK  GKLV++GAPEKP ELP F LL G K++GG++ GG+KETQEM+DFAAKHNI
Sbjct: 262 APLFDLLKPNGKLVMVGAPEKPFELPVFSLLKGRKLLGGTINGGIKETQEMLDFAAKHNI 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
            AD+EVIP DYVNTAMERL K+DVRYRFVID+ANTM++
Sbjct: 322 TADVEVIPMDYVNTAMERLVKSDVRYRFVIDIANTMRT 359

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.

Apium graveolens (taxid: 4045)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

>sp|Q2KNL6|GEDH1_OCIBA Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1

 Score =  302 bits (773), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 153/217 (70%), Positives = 184/217 (84%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHF++R PE  PLDA APLLCAGIT YSPL+++GLDKPG+ VGV GLGGLGHVAVK
Sbjct: 142 MVADEHFIIRWPENFPLDAGAPLLCAGITTYSPLKYFGLDKPGLRVGVNGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KVTVISTS SKK EA++ LG D F+VS D  +MQAA+GT+DGIIDTVSA HP+
Sbjct: 202 FAKAFGTKVTVISTSLSKKEEAMQHLGVDEFVVSTDPQQMQAAVGTLDGIIDTVSAPHPI 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+ LLK  GKL+++G P+KPL+LP FPL+ G + + GS IGGLKETQEMIDFAAK+NI
Sbjct: 262 VPLLSLLKPHGKLIVVGLPDKPLQLPVFPLIQGRRTIAGSGIGGLKETQEMIDFAAKNNI 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            AD+EVIP DY+NTAM+RL K+DV+YRFVIDV  ++K
Sbjct: 322 VADVEVIPIDYINTAMDRLLKSDVKYRFVIDVEKSLK 358

Involved in the production of citral, a mixture of geranial and neral with a strong lemony scent. Reversibly oxidizes geraniol and nerol in equal efficiency. Also active, although at a lower efficiency, with cinnamyl alcohol.

Ocimum basilicum (taxid: 39350)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

>sp|Q02972|CADH8_ARATH Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1

 Score =  298 bits (764), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 165/220 (75%), Positives = 190/220 (86%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV +E FV+RIP+  PLDA APLLCAGITVYSP++++GLDKPGMH+GVVGLGGLGHV VK
Sbjct: 138 MVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVK 197

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMG KVTVISTS  K+ EA+ RLGAD+FLVSRD  +++ AMGTMDGIIDTVSA H L
Sbjct: 198 FAKAMGTKVTVISTSEKKRDEAINRLGADAFLVSRDPKQIKDAMGTMDGIIDTVSATHSL 257

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+GLLK +GKLV++GAPEKPLELP  PL+   K+V GS+IGG+KETQEMID A KHNI
Sbjct: 258 LPLLGLLKHKGKLVMVGAPEKPLELPVMPLIFERKMVMGSMIGGIKETQEMIDMAGKHNI 317

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
            ADIE+I ADYVNTAMERL KADVRYRFVIDVANT+K  P
Sbjct: 318 TADIELISADYVNTAMERLEKADVRYRFVIDVANTLKPNP 357

Involved in lignin biosynthesis. Catalyzes the final step specific for the production of lignin monomers. Catalyzes the NADPH-dependent reduction of coniferaldehyde, 5-hydroxyconiferaldehyde, sinapaldehyde, 4-coumaraldehyde and caffeyl aldehyde to their respective alcohols.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|P42734|CADH9_ARATH Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=2 SV=2

 Score =  287 bits (734), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 147/216 (68%), Positives = 178/216 (82%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V D+ FV+R PE  P D+ APLLCAGITVYSP+++YG+ + G H+GV GLGGLGHVAVK
Sbjct: 142 IVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             KA G+KVTVIS+S +K  EA+  LGADSFLV+ D  +M+AA+GTMD IIDT+SAVH L
Sbjct: 202 IGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQKMKAAIGTMDYIIDTISAVHAL 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
            PL+GLLK  GKL+ LG PEKPLELP FPL+ G K+VGGS +GG+KETQEM+DF AKHNI
Sbjct: 262 YPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGGSDVGGMKETQEMLDFCAKHNI 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
            ADIE+I  D +NTAMERLAK+DVRYRFVIDVAN++
Sbjct: 322 TADIELIKMDEINTAMERLAKSDVRYRFVIDVANSL 357

Involved in lignin biosynthesis. May catalyze the final step specific for the production of lignin monomers, like coniferyl alcohol, sinapyl alcohol and 4-coumaryl alcohol.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 9

EC: 5

>sp|Q43138|MTDH3_STYHU Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1

 Score =  284 bits (727), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 157/221 (71%), Positives = 187/221 (84%), Gaps = 3/221 (1%)

Query: 1   MVADEHFVVRIPEGAPLDAT-APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAV 59
           MV DEHFV RIPEG PLD   +  LC G + +SPL++YGLDKPG+HVGVVGLGGLGH+  
Sbjct: 143 MVVDEHFVTRIPEGLPLDGCGSSSLCWGYS-HSPLKYYGLDKPGLHVGVVGLGGLGHMVA 201

Query: 60  KFAKAMGVKVTVISTSP-SKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH 118
           KFAK  G+K+TVISTSP +KK EA++ LGADSFLVSRD D+M+A   T+DGIIDTVSA H
Sbjct: 202 KFAKTHGLKITVISTSPPTKKEEAIKNLGADSFLVSRDPDQMEAPKETLDGIIDTVSADH 261

Query: 119 PLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKH 178
            ++PLIGLLKS GKLVL+GA EKPLELP FPL+ G K+VGG+L+GGLKETQEMIDF+ KH
Sbjct: 262 SIVPLIGLLKSHGKLVLIGAIEKPLELPPFPLILGRKLVGGTLVGGLKETQEMIDFSPKH 321

Query: 179 NIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 219
           N++ +IEV+P DYVN AM+RLAKADV+YRFVIDVANT+K T
Sbjct: 322 NVKPEIEVVPMDYVNIAMQRLAKADVKYRFVIDVANTLKPT 362

Oxidizes mannitol to mannose. Provides the initial step by which translocated mannitol is committed to central metabolism and, by regulating mannitol pool size, is important in regulating salt tolerance at the cellular level.

Stylosanthes humilis (taxid: 35628)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
356560957	344	PREDICTED: probable mannitol dehydrogena	0.986	0.630	0.783	1e-97
224138226	362	cinnamyl alcohol dehydrogenase-like prot	0.986	0.599	0.843	4e-97
118489566	362	unknown [Populus trichocarpa x Populus d	0.986	0.599	0.843	9e-97
255587709	362	alcohol dehydrogenase, putative [Ricinus	0.986	0.599	0.838	1e-96
255587478	359	alcohol dehydrogenase, putative [Ricinus	0.990	0.607	0.825	2e-96
224104051	360	cinnamyl alcohol dehydrogenase-like prot	0.986	0.602	0.852	4e-95
307634614	360	cinnamyl alcohol dehydrogenase [Salvia m	0.995	0.608	0.799	1e-94
224144875	360	cinnamyl alcohol dehydrogenase-like prot	0.986	0.602	0.843	3e-94
224104043	360	cinnamyl alcohol dehydrogenase-like prot	0.986	0.602	0.843	3e-94
332384183	361	cinnamyl alcohol dehydrogenase 3 [Camell	0.986	0.601	0.820	3e-93

>gi|356560957|ref|XP_003548752.1| PREDICTED: probable mannitol dehydrogenase-like [Glycine max]

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 170/217 (78%), Positives = 193/217 (88%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHFV+RIP+   LDATAPL+CAGITVYSPLR+YGLDKP +HVGVVGL GLGH+AVK
Sbjct: 127 MVADEHFVIRIPDSLALDATAPLICAGITVYSPLRYYGLDKPDLHVGVVGLSGLGHMAVK 186

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KV VISTSPSKK EA++ LGADSFL++RDQD+MQ  MG +DGIIDTVSAVHPL
Sbjct: 187 FAKAFGAKVIVISTSPSKKDEAIQHLGADSFLLNRDQDQMQGTMGALDGIIDTVSAVHPL 246

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLIGLLKS GK+V++ APE+PLELP FPLL G+ IV GSLIGGLKETQEMIDFAAKHN+
Sbjct: 247 LPLIGLLKSHGKIVMVDAPERPLELPVFPLLAGKHIVAGSLIGGLKETQEMIDFAAKHNV 306

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
           + DIEVIP DYVNTAMERL K DV+YRFVID+ NT+K
Sbjct: 307 KPDIEVIPMDYVNTAMERLLKEDVKYRFVIDIGNTLK 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138226|ref|XP_002322761.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa] gi|222867391|gb|EEF04522.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa]

 Score =  359 bits (922), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 200/217 (92%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHF+VRIP   PLDA APLLCAGITVYSPLR++GLDKPGMHVG+VGLGGLGHVAVK
Sbjct: 143 MVADEHFIVRIPNNLPLDAGAPLLCAGITVYSPLRYFGLDKPGMHVGIVGLGGLGHVAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FA+AMGVKVTVISTSP+KK EA+E LGADSFLVSRDQD+MQAAMGT+DGIIDTVSAVHPL
Sbjct: 203 FARAMGVKVTVISTSPNKKQEALENLGADSFLVSRDQDQMQAAMGTLDGIIDTVSAVHPL 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+ LLKS GKLVL+GAPEKPLELP FPL+TG K VGGS +GG+KETQEMIDFAAKHNI
Sbjct: 263 LPLVALLKSHGKLVLVGAPEKPLELPVFPLITGRKTVGGSCVGGIKETQEMIDFAAKHNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVIP DYVNTAMER+ KADVRYRFVIDV  T+K
Sbjct: 323 TADIEVIPMDYVNTAMERVLKADVRYRFVIDVGKTLK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489566|gb|ABK96585.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  358 bits (919), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 199/217 (91%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHF+VRIP   PLDA APLLCAGITVYSPLR++GLDKPGMHVG+VGLGGLGHVAVK
Sbjct: 143 MVADEHFIVRIPNNLPLDAGAPLLCAGITVYSPLRYFGLDKPGMHVGIVGLGGLGHVAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FA+AMGVKVTVISTSP+KK EA+E LGADSFLVSRDQD+MQAAMGT+DGIIDTVSAVHPL
Sbjct: 203 FARAMGVKVTVISTSPNKKQEALENLGADSFLVSRDQDQMQAAMGTLDGIIDTVSAVHPL 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL+ LLKS GKLVL+GAPEKPLELP FPL+TG K VGGS  GG+KETQEMIDFAAKHNI
Sbjct: 263 LPLVALLKSHGKLVLVGAPEKPLELPVFPLITGRKTVGGSCFGGIKETQEMIDFAAKHNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVIP DYVNTAMER+ KADVRYRFVIDV  T+K
Sbjct: 323 TADIEVIPMDYVNTAMERVLKADVRYRFVIDVGKTLK 359

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587709|ref|XP_002534367.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223525426|gb|EEF28018.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/217 (83%), Positives = 203/217 (93%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV+DEHFVVRIP+  PLDATAPLLCAGITVYSPL++YGLDKPGM +GVVGLGGLGH+AVK
Sbjct: 143 MVSDEHFVVRIPDNLPLDATAPLLCAGITVYSPLKYYGLDKPGMQLGVVGLGGLGHMAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMG KVTVISTSP+KK EA+ERLGADSFLVSRDQD+M+ A+GTMDGIIDTVSA+HPL
Sbjct: 203 FAKAMGAKVTVISTSPNKKQEAIERLGADSFLVSRDQDQMKGAIGTMDGIIDTVSAMHPL 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
            PLIGLLKS GKLVL+GAPEKPLELPAFPL+ G K+VGGS IGG+KETQEMIDFAAKH+I
Sbjct: 263 SPLIGLLKSDGKLVLVGAPEKPLELPAFPLIGGRKLVGGSCIGGMKETQEMIDFAAKHSI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVIPA+YVNTAMER+ KADVRYRFVID+ NT+K
Sbjct: 323 TADIEVIPANYVNTAMERMLKADVRYRFVIDIGNTLK 359

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587478|ref|XP_002534286.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223525574|gb|EEF28097.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 180/218 (82%), Positives = 201/218 (92%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVA+EHFVVRIP+  PLDATAPLLCAGITVYSPL++YGLDKPG  + VVGLGGLGH+AVK
Sbjct: 140 MVANEHFVVRIPDNLPLDATAPLLCAGITVYSPLKYYGLDKPGTQLAVVGLGGLGHMAVK 199

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMG KVTVISTSP+KK EA+ERLGADSFLV+RDQD+M+ AMGTMDGIIDTVSA+H L
Sbjct: 200 FAKAMGAKVTVISTSPNKKQEAIERLGADSFLVTRDQDQMKGAMGTMDGIIDTVSAMHLL 259

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLIGLLKS GKLVL+GAPEKPLELPAFPLL G K+VGGS IGG+KETQEM+DFAAKH+I
Sbjct: 260 LPLIGLLKSHGKLVLVGAPEKPLELPAFPLLAGRKMVGGSGIGGMKETQEMLDFAAKHSI 319

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
            ADIEVIP DYVNTAMER+ KADVRYRFVID+ NT+KS
Sbjct: 320 TADIEVIPVDYVNTAMERMLKADVRYRFVIDIGNTLKS 357

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104051|ref|XP_002313297.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa] gi|222849705|gb|EEE87252.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa]

 Score =  352 bits (904), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 185/217 (85%), Positives = 199/217 (91%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV DEHFVVRIP+  PLDA APLLCAGITVYSPLRF+ LDKPGMHVGVVGLGGLGHVAVK
Sbjct: 143 MVTDEHFVVRIPDNLPLDAAAPLLCAGITVYSPLRFFNLDKPGMHVGVVGLGGLGHVAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMGVKVTVISTSP KK EA+E LGADSFLVSRDQDEMQAAMGTMDG+IDTVSA+HP+
Sbjct: 203 FAKAMGVKVTVISTSPKKKQEALEHLGADSFLVSRDQDEMQAAMGTMDGVIDTVSAIHPI 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLI LLK+QGKLVL+GAPEKPLELP FPL+ G KIVGGS IGG+KETQEMIDFAAK+NI
Sbjct: 263 LPLISLLKTQGKLVLVGAPEKPLELPVFPLIMGRKIVGGSCIGGMKETQEMIDFAAKNNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVI  DYVNTAMERL+K DVRYRFVID+ NTMK
Sbjct: 323 TADIEVISMDYVNTAMERLSKTDVRYRFVIDIGNTMK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307634614|gb|ADN78309.1| cinnamyl alcohol dehydrogenase [Salvia miltiorrhiza]

 Score =  351 bits (900), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 175/219 (79%), Positives = 200/219 (91%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVA+EHF+VRIP+  PLD+ APLLCAGIT YSP+R++GLDKPGMH+GVVGLGGLGHVAVK
Sbjct: 142 MVAEEHFIVRIPDNMPLDSAAPLLCAGITTYSPMRYFGLDKPGMHIGVVGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KVTVISTSP+KK EA+  LGADSFL+S+D DEMQAAMGTMDGIIDTVSA HPL
Sbjct: 202 FAKAFGSKVTVISTSPNKKDEALSNLGADSFLISKDADEMQAAMGTMDGIIDTVSAYHPL 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           MPLIGLLK+ GKLV+LGAP+KPLELP FPLL G K++ GS IGG+KETQEMIDFAAKHNI
Sbjct: 262 MPLIGLLKAHGKLVMLGAPDKPLELPVFPLLAGRKMISGSGIGGMKETQEMIDFAAKHNI 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 219
           +ADIE+I ADYVNTA+ERLAKADV+YRFVIDVANT++ +
Sbjct: 322 KADIELISADYVNTALERLAKADVKYRFVIDVANTLQQS 360

Source: Salvia miltiorrhiza

Species: Salvia miltiorrhiza

Genus: Salvia

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144875|ref|XP_002336182.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa] gi|222831876|gb|EEE70353.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa]

 Score =  350 bits (898), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 199/217 (91%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV DEHFV+RIP+  PLDA APLLCAGITVYSPLRF+ LDKPGMHVGVVGLGGLGHVAVK
Sbjct: 143 MVTDEHFVIRIPDNLPLDAAAPLLCAGITVYSPLRFFNLDKPGMHVGVVGLGGLGHVAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMGVKVTVISTSP KK EA+E LGADSFLVSRDQDEMQAA+GTMDG+IDTVSA+HP+
Sbjct: 203 FAKAMGVKVTVISTSPKKKQEALEHLGADSFLVSRDQDEMQAAVGTMDGVIDTVSAIHPI 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLI LLK+QGKLVL+GAPEKPLELP FPL+ G KIVGGS IGG+KETQEMIDFAAK+NI
Sbjct: 263 LPLISLLKTQGKLVLVGAPEKPLELPVFPLIMGRKIVGGSTIGGMKETQEMIDFAAKNNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVI  DYVNTAMERL+K DVRYRFVID+ NTMK
Sbjct: 323 TADIEVISMDYVNTAMERLSKTDVRYRFVIDIGNTMK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104043|ref|XP_002313294.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa] gi|222849702|gb|EEE87249.1| cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa]

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 183/217 (84%), Positives = 199/217 (91%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV DEHFV+RIP+  PLDA APLLCAGITVYSPLRF+ LDKPGMHVGVVGLGGLGHVAVK
Sbjct: 143 MVTDEHFVIRIPDNLPLDAAAPLLCAGITVYSPLRFFNLDKPGMHVGVVGLGGLGHVAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKAMGVKVTVISTSP KK EA+E LGADSFLVSRDQDEMQAA+GTMDG+IDTVSA+HP+
Sbjct: 203 FAKAMGVKVTVISTSPKKKQEALEHLGADSFLVSRDQDEMQAAVGTMDGVIDTVSAIHPI 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLI LLK+QGKLVL+GAPEKPLELP FPL+ G KIVGGS IGG+KETQEMIDFAAK+NI
Sbjct: 263 LPLISLLKTQGKLVLVGAPEKPLELPVFPLIMGRKIVGGSTIGGMKETQEMIDFAAKNNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVI  DYVNTAMERL+K DVRYRFVID+ NTMK
Sbjct: 323 TADIEVISMDYVNTAMERLSKTDVRYRFVIDIGNTMK 359

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|332384183|gb|AEE69008.1| cinnamyl alcohol dehydrogenase 3 [Camellia sinensis]

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 178/217 (82%), Positives = 194/217 (89%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADEHFV+RIP+  PLDA+APLLCAGIT YSPL+ +GLD+PGMHVGVVGLGGLGH AVK
Sbjct: 143 MVADEHFVIRIPDSLPLDASAPLLCAGITTYSPLKHFGLDQPGMHVGVVGLGGLGHAAVK 202

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA GVKVTVISTSP+KK EA+ERLGADSFL SRD  +MQ  MGTMDGIIDTVSA HPL
Sbjct: 203 FAKAFGVKVTVISTSPNKKKEAIERLGADSFLDSRDPTQMQVVMGTMDGIIDTVSAPHPL 262

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PLIGLLKS GKL+L+GAPEKPLELP FPLL G KIV GS IGG+KETQEMIDFAAKHNI
Sbjct: 263 LPLIGLLKSHGKLILVGAPEKPLELPVFPLLMGRKIVAGSCIGGIKETQEMIDFAAKHNI 322

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            ADIEVIP DYVNTA+ERL KADVRYRFVID+ NT+K
Sbjct: 323 TADIEVIPMDYVNTALERLVKADVRYRFVIDIGNTLK 359

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
TAIR|locus:2005527	357	ELI3-1 "elicitor-activated gen	1.0	0.616	0.690	6.8e-79
TAIR|locus:2005528	359	ELI3-2 "elicitor-activated gen	1.0	0.612	0.690	4.3e-77
TAIR|locus:2136278	360	CAD9 "cinnamyl alcohol dehydro	0.995	0.608	0.618	4.4e-68
TAIR|locus:2120968	363	CAD6 "cinnamyl alcohol dehydro	0.995	0.603	0.589	9.4e-66
TAIR|locus:2052516	376	CAD2 "cinnamyl alcohol dehydro	0.981	0.574	0.585	3.8e-62
TAIR|locus:2052494	375	CAD3 "cinnamyl alcohol dehydro	0.981	0.576	0.580	1.6e-61
UNIPROTKB|Q0JA75	379	CAD7 "Cinnamyl alcohol dehydro	0.990	0.575	0.548	1.3e-59
TIGR_CMR|GSU_3125	352	GSU_3125 "alcohol dehydrogenas	0.963	0.602	0.485	1.4e-48
UNIPROTKB|O24562	367	CAD "Probable cinnamyl alcohol	0.977	0.585	0.483	9.8e-48
TAIR|locus:2124311	357	CAD5 "cinnamyl alcohol dehydro	0.959	0.591	0.473	9.8e-48

TAIR|locus:2005527 ELI3-1 "elicitor-activated gene 3-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 152/220 (69%), Positives = 179/220 (81%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             MV  E F++RIP+  PLD  APLLCAG+TVYSP++++GLDKPGM               K
Sbjct:   138 MVCAEDFIIRIPDNLPLDGAAPLLCAGVTVYSPMKYHGLDKPGMHIGVVGLGGLGHVAVK 197

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             FAKAMG KVTVISTS  K+ EAV RLGAD+FLVSRD  +M+ AMGTMDGIIDTVSA HPL
Sbjct:   198 FAKAMGTKVTVISTSERKRDEAVTRLGADAFLVSRDPKQMKDAMGTMDGIIDTVSATHPL 257

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
             +PL+GLLK++GKLV++GAP +PLELP FPL+ G K+V GS++GG+KETQEM+D A KHNI
Sbjct:   258 LPLLGLLKNKGKLVMVGAPAEPLELPVFPLIFGRKMVVGSMVGGIKETQEMVDLAGKHNI 317

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
              ADIE+I ADYVNTAMERLAKADV+YRFVIDVANTMK TP
Sbjct:   318 TADIELISADYVNTAMERLAKADVKYRFVIDVANTMKPTP 357

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IEP

TAIR|locus:2005528 ELI3-2 "elicitor-activated gene 3-2" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 152/220 (69%), Positives = 176/220 (80%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             MV +E FV+RIP+  PLDA APLLCAGITVYSP++++GLDKPGM               K
Sbjct:   138 MVCEEGFVIRIPDNLPLDAAAPLLCAGITVYSPMKYHGLDKPGMHIGVVGLGGLGHVGVK 197

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             FAKAMG KVTVISTS  K+ EA+ RLGAD+FLVSRD  +++ AMGTMDGIIDTVSA H L
Sbjct:   198 FAKAMGTKVTVISTSEKKRDEAINRLGADAFLVSRDPKQIKDAMGTMDGIIDTVSATHSL 257

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
             +PL+GLLK +GKLV++GAPEKPLELP  PL+   K+V GS+IGG+KETQEMID A KHNI
Sbjct:   258 LPLLGLLKHKGKLVMVGAPEKPLELPVMPLIFERKMVMGSMIGGIKETQEMIDMAGKHNI 317

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
              ADIE+I ADYVNTAMERL KADVRYRFVIDVANT+K  P
Sbjct:   318 TADIELISADYVNTAMERLEKADVRYRFVIDVANTLKPNP 357

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046029 "mannitol dehydrogenase activity" evidence=IDA

GO:0047681 "aryl-alcohol dehydrogenase (NADP+) activity" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2136278 CAD9 "cinnamyl alcohol dehydrogenase 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
 Identities = 136/220 (61%), Positives = 166/220 (75%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             +V D+ FV+R PE  P D+ APLLCAGITVYSP+++YG+ + G                K
Sbjct:   142 IVVDQRFVLRFPENLPSDSGAPLLCAGITVYSPMKYYGMTEAGKHLGVAGLGGLGHVAVK 201

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
               KA G+KVTVIS+S +K  EA+  LGADSFLV+ D  +M+AA+GTMD IIDT+SAVH L
Sbjct:   202 IGKAFGLKVTVISSSSTKAEEAINHLGADSFLVTTDPQKMKAAIGTMDYIIDTISAVHAL 261

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
              PL+GLLK  GKL+ LG PEKPLELP FPL+ G K+VGGS +GG+KETQEM+DF AKHNI
Sbjct:   262 YPLLGLLKVNGKLIALGLPEKPLELPMFPLVLGRKMVGGSDVGGMKETQEMLDFCAKHNI 321

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
              ADIE+I  D +NTAMERLAK+DVRYRFVIDVAN++ S P
Sbjct:   322 TADIELIKMDEINTAMERLAKSDVRYRFVIDVANSL-SPP 360

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IMP

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2120968 CAD6 "cinnamyl alcohol dehydrogenase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 129/219 (58%), Positives = 165/219 (75%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             +V DE + V+IP   PL + APLLCAGI++YSP++++GL  P                 +
Sbjct:   143 IVVDERYAVKIPHTLPLVSAAPLLCAGISMYSPMKYFGLTGPDKHVGIVGLGGLGHIGVR 202

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             FAKA G KVTV+S++  K  +A++ LGAD FLVS D+D+M+AAMGTMDGIIDTVSA H +
Sbjct:   203 FAKAFGTKVTVVSSTTGKSKDALDTLGADGFLVSTDEDQMKAAMGTMDGIIDTVSASHSI 262

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
              PLIGLLKS GKLVLLGA EKP ++ AF L+ G K + GS IGG++ETQEMIDFAA+H I
Sbjct:   263 SPLIGLLKSNGKLVLLGATEKPFDISAFSLILGRKSIAGSGIGGMQETQEMIDFAAEHGI 322

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 219
             +A+IE+I  DYVNTAM+RLAK DVRYRFVID++NT+ +T
Sbjct:   323 KAEIEIISMDYVNTAMDRLAKGDVRYRFVIDISNTLAAT 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IEP

TAIR|locus:2052516 CAD2 "cinnamyl alcohol dehydrogenase homolog 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 127/217 (58%), Positives = 159/217 (73%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKP-GMXXXXXXXXXXXXXXX 59
             +V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K  G                
Sbjct:   137 IVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAV 196

Query:    60 KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
             K  KA G++VTVIS S  K+ EA++RLGADSFLV+ D  +M+ A+GTMD IIDTVSA H 
Sbjct:   197 KIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA 256

Query:   120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHN 179
             L+PL  LLK  GKLV LG PEKPL+LP F L+ G K+VGGS IGG+KETQEM++F AKH 
Sbjct:   257 LLPLFSLLKVNGKLVALGLPEKPLDLPIFSLVLGRKMVGGSQIGGMKETQEMLEFCAKHK 316

Query:   180 IRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
             I +DIE+I    +N+AM+RLAK+DVRYRFVIDVAN++
Sbjct:   317 IVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSL 353

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IC

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

TAIR|locus:2052494 CAD3 "cinnamyl alcohol dehydrogenase homolog 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 126/217 (58%), Positives = 158/217 (72%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKP-GMXXXXXXXXXXXXXXX 59
             +V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K  G                
Sbjct:   136 IVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAV 195

Query:    60 KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
             K  KA G++VTVIS S  K+ EA++RLGADSFLV+ D  +M+ A+GTMD IIDTVSA H 
Sbjct:   196 KIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA 255

Query:   120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHN 179
             L+PL  LLK  GKLV LG  EKPL+LP FPL+ G K+VGGS IGG+KETQEM++F AKH 
Sbjct:   256 LLPLFSLLKVSGKLVALGLLEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHK 315

Query:   180 IRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
             I +DIE+I    +N+AM+RL K+DVRYRFVIDVAN++
Sbjct:   316 IVSDIELIKMSDINSAMDRLVKSDVRYRFVIDVANSL 352

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=IC

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA

UNIPROTKB|Q0JA75 CAD7 "Cinnamyl alcohol dehydrogenase 7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
 Identities = 124/226 (54%), Positives = 160/226 (70%)

Query:     1 MVADEHFVVRIPEGA--------PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXX 52
             +V  + FVVR P  A        PLD+ APLLCAG+TVY+P+R +GL + G         
Sbjct:   153 VVVSQRFVVRFPSSAGGGAGAALPLDSGAPLLCAGVTVYAPMRQHGLCEAGKHVGVVGLG 212

Query:    53 XXXXXXXKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID 112
                    KFA+A G++VTVISTSP K+ EA+ERLGAD F+VS +  EM+AAMGTM GII+
Sbjct:   213 GLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFIVSTNASEMKAAMGTMHGIIN 272

Query:   113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMI 172
             T SA   +   + LLK +GK++L+G PEKPL++P F L+ G KI+ GS +G + ETQEMI
Sbjct:   273 TASASTSMHSYLALLKPKGKMILVGLPEKPLQIPTFALVGGGKILAGSCMGSISETQEMI 332

Query:   173 DFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
             DFAA+H + ADIE+I AD VNTAMERLAK DVRYRFV+D+ NT++S
Sbjct:   333 DFAAEHGVAADIELIGADEVNTAMERLAKGDVRYRFVVDIGNTLRS 378

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IMP

TIGR_CMR|GSU_3125 GSU_3125 "alcohol dehydrogenase, zinc-containing" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 104/214 (48%), Positives = 138/214 (64%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             +V DE FV+ +P    L   APLLCAGIT YSP+R +G D  G                K
Sbjct:   138 IVVDERFVLHVPATLDLAGVAPLLCAGITTYSPIRRWG-DIRGKKAGVVGLGGLGHMGVK 196

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             FA+A G +V V +TSP KK +A+ RLGA   +VS + +EMQ   GT D I+DT++A H +
Sbjct:   197 FARAFGAQVVVFTTSPGKKEDAL-RLGAHEVIVSTNAEEMQQHAGTFDFILDTIAADHDI 255

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
                + +L   G + L+GAPEKPLE+ AF LL G + + GS+IGG+ ETQEM+DF  +HNI
Sbjct:   256 NAYLNMLGRDGTITLVGAPEKPLEVSAFALLFGRRSLSGSIIGGIAETQEMLDFCGQHNI 315

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVAN 214
              AD+EVIP   +N A ERL K+DV+YRF ID+A+
Sbjct:   316 TADVEVIPIQKINEAYERLLKSDVKYRFSIDMAS 349

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

UNIPROTKB|O24562 CAD "Probable cinnamyl alcohol dehydrogenase" [Zea mays (taxid:4577)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 104/215 (48%), Positives = 136/215 (63%)

Query:     1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
             MV D+ FVV+IP G   +  APLLCAG+TVYSPL+ +GL  PG+               K
Sbjct:   139 MVVDQKFVVKIPAGLAPEQAAPLLCAGVTVYSPLKHFGLTNPGLRGGILGLGGVGHMGVK 198

Query:    61 FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
              AKAMG  VTVIS+S  K++EA++ LGAD++LVS D   M AA  ++D IIDTV   HPL
Sbjct:   199 VAKAMGHHVTVISSSSKKRAEAMDHLGADAYLVSSDAAAMAAAADSLDYIIDTVPVHHPL 258

Query:   121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
              P + LLK  GKLVLLG   +PL   +  ++ G K + GS IG + ET E++ F     +
Sbjct:   259 EPYLALLKLDGKLVLLGVIGEPLSFVSPMVMLGRKAITGSFIGSIDETAEVLQFCVDKGL 318

Query:   181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 215
              + IEV+   YVN A+ERL + DVRYRFV+DVA +
Sbjct:   319 TSQIEVVKMGYVNEALERLERNDVRYRFVVDVAGS 353

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IMP

TAIR|locus:2124311 CAD5 "cinnamyl alcohol dehydrogenase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
 Identities = 100/211 (47%), Positives = 135/211 (63%)

Query:     2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
             V  + FVV+IPEG  ++  APLLCAG+TVYSPL  +GL +PG+               K 
Sbjct:   140 VVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKI 199

Query:    62 AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM 121
             AKAMG  VTVIS+S  K+ EA++ LGAD +++  DQ +M     ++D +IDTV   H L 
Sbjct:   200 AKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALE 259

Query:   122 PLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIR 181
             P + LLK  GKL+L+G    PL+     L+ G K++ GS IG +KET+EM++F  +  + 
Sbjct:   260 PYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGLS 319

Query:   182 ADIEVIPADYVNTAMERLAKADVRYRFVIDV 212
             + IEV+  DYVNTA ERL K DVRYRFV+DV
Sbjct:   320 SIIEVVKMDYVNTAFERLEKNDVRYRFVVDV 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0045551 "cinnamyl-alcohol dehydrogenase activity" evidence=IDA;IMP

GO:0009809 "lignin biosynthetic process" evidence=IGI;IMP;TAS

GO:0005829 "cytosol" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42754	MTDH_PETCR	1, ., 1, ., 1, ., 2, 5, 5	0.7660	0.9909	0.6468	N/A	no
P93257	MTDH_MESCR	1, ., 1, ., 1, ., 2, 5, 5	0.7568	0.9909	0.6038	N/A	no
Q0J6T3	CADH5_ORYSJ	1, ., 1, ., 1, ., 1, 9, 5	0.6774	0.9818	0.6101	yes	no
Q43138	MTDH3_STYHU	1, ., 1, ., 1, ., 2, 5, 5	0.7104	0.9909	0.6005	N/A	no
Q2KNL6	GEDH1_OCIBA	1, ., 1, ., 1, ., 1, 8, 3	0.7050	0.9863	0.6027	N/A	no
P0CH36	ADHC1_MYCS2	1, ., 1, ., 1, ., 2	0.5560	0.9636	0.6074	yes	no
P0CH37	ADHC2_MYCS2	1, ., 1, ., 1, ., 2	0.5560	0.9636	0.6074	yes	no
Q9ZRF1	MTDH_FRAAN	1, ., 1, ., 1, ., 2, 5, 5	0.8248	0.9863	0.6044	N/A	no
Q6V4H0	10HGO_CATRO	1, ., 1, ., 1, ., 3, 2, 4	0.7660	0.9909	0.6055	N/A	no
Q02971	CADH7_ARATH	1, ., 1, ., 1, ., 1, 9, 5	0.7545	1.0	0.6162	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: CADL4 cinnamyl alcohol dehydrogenase-like protein (362 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	220
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	1e-122
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-120
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	1e-98
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	3e-88
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	2e-87
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-71
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	1e-48
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	2e-44
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	6e-31
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	1e-30
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	8e-25
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	7e-24
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	2e-23
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	4e-18
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	1e-17
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	1e-17
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	3e-17
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	2e-15
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	1e-14
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	2e-13
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-12
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	1e-11
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	5e-11
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	4e-10
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	6e-10
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	6e-10
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	1e-09
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-09
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-09
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	7e-09
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	9e-09
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-08
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-08
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	2e-08
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	2e-08
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	4e-08
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	4e-08
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	4e-08
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	5e-08
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	1e-07
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	4e-07
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	8e-07
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	9e-07
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	9e-07
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	2e-06
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	6e-06
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	7e-06
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	7e-06
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	1e-05
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	2e-05
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	2e-05
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	3e-05
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	3e-05
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	3e-05
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	4e-05
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	5e-05
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	6e-05
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	6e-05
smart00829	287	smart00829, PKS_ER, Enoylreductase	8e-05
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	9e-05
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	1e-04
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	2e-04
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	3e-04
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	5e-04
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	5e-04
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	6e-04
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	6e-04
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	9e-04
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	0.001
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	0.001
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	0.001
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	0.001
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	0.002
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	0.002
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	0.002
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	0.003
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	0.003
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	0.003
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	0.003
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	0.004

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score =  350 bits (900), Expect = e-122
 Identities = 154/216 (71%), Positives = 184/216 (85%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V D+HFV+R P+  PLDA APLLCAGITVYSP+++YG+ +PG H+GV GLGGLGHVAVK
Sbjct: 142 IVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVK 201

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
             KA G+KVTVIS+S +K+ EA+ RLGADSFLVS D ++M+AA+GTMD IIDTVSAVH L
Sbjct: 202 IGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHAL 261

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
            PL+GLLK  GKL+ LG PEKPLELP FPL+ G K+VGGS IGG+KETQEM+DF AKHNI
Sbjct: 262 GPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSDIGGIKETQEMLDFCAKHNI 321

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
            ADIE+I  D +NTAMERLAK+DVRYRFVIDVAN++
Sbjct: 322 TADIELIRMDEINTAMERLAKSDVRYRFVIDVANSL 357

Length = 360

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  344 bits (884), Expect = e-120
 Identities = 131/211 (62%), Positives = 160/211 (75%), Gaps = 2/211 (0%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V DE FV +IPEG    A APLLCAGITVYSPL+  G+  PG  VGVVG+GGLGH+AVK
Sbjct: 129 IVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNGV-GPGKRVGVVGIGGLGHLAVK 187

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA+G +VT  S SPSKK +A  +LGAD F+ ++D + M+ A G++D IIDTVSA H L
Sbjct: 188 FAKALGAEVTAFSRSPSKKEDA-LKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDL 246

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
            P + LLK  G LVL+GAPE+PL +P FPL+ G K V GSLIGG KETQEM+DFAA+H I
Sbjct: 247 DPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSLIGGRKETQEMLDFAAEHGI 306

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVID 211
           +  +EVIP D +N A+ERL K DVRYRFV+D
Sbjct: 307 KPWVEVIPMDGINEALERLEKGDVRYRFVLD 337

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score =  291 bits (745), Expect = 1e-98
 Identities = 139/217 (64%), Positives = 173/217 (79%), Gaps = 1/217 (0%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK-PGMHVGVVGLGGLGHVAV 59
           +V D  FV+ IP+G P D+ APLLCAGITVYSP+++YG+ K  G  +GV GLGGLGH+AV
Sbjct: 136 IVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAV 195

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           K  KA G++VTVIS S  K+ EA++RLGADSFLV+ D  +M+ A+GTMD IIDTVSA H 
Sbjct: 196 KIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHA 255

Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHN 179
           L+PL  LLK  GKLV LG PEKPL+LP FPL+ G K+VGGS IGG+KETQEM++F AKH 
Sbjct: 256 LLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHK 315

Query: 180 IRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
           I +DIE+I    +N+AM+RLAK+DVRYRFVIDVAN++
Sbjct: 316 IVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANSL 352

Length = 375

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score =  263 bits (675), Expect = 3e-88
 Identities = 118/213 (55%), Positives = 151/213 (70%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MV D+ FVV+IPEG   +  APLLCAG+TVYSPL  +GL + G+  G++GLGG+GH+ VK
Sbjct: 139 MVVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVK 198

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            AKAMG  VTVIS+S  K+ EA+E LGAD +LVS D  EMQ A  ++D IIDTV   HPL
Sbjct: 199 IAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHPL 258

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
            P + LLK  GKL+L+G    PL+     L+ G K++ GS IG +KET+EM++F  +  +
Sbjct: 259 EPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFIGSMKETEEMLEFCKEKGL 318

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVA 213
            + IEV+  DYVNTA ERL K DVRYRFV+DVA
Sbjct: 319 TSMIEVVKMDYVNTAFERLEKNDVRYRFVVDVA 351

Length = 357

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  261 bits (668), Expect = 2e-87
 Identities = 96/211 (45%), Positives = 131/211 (62%), Gaps = 3/211 (1%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVAD  + V +P+G PL   APLLCAGITVYS LR  G  +PG  V V+G+GGLGH+AV+
Sbjct: 122 MVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRDAGP-RPGERVAVLGIGGLGHLAVQ 180

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           +A+AMG +   I+ SP K+  A  +LGAD  + S  + + QAA G  D I+ TV +    
Sbjct: 181 YARAMGFETVAITRSPDKRELA-RKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAA 239

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELP-AFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHN 179
              +G L+  G++VL+G PE P   P  FPL+   + + GS  GG  + QE +DFAA+  
Sbjct: 240 EAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGK 299

Query: 180 IRADIEVIPADYVNTAMERLAKADVRYRFVI 210
           ++  IE  P D  N A ER+ K DVR+RFV+
Sbjct: 300 VKPMIETFPLDQANEAYERMEKGDVRFRFVL 330

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  220 bits (563), Expect = 2e-71
 Identities = 98/214 (45%), Positives = 127/214 (59%), Gaps = 6/214 (2%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V    +VV+IPEG  L   APLLCAGIT Y  L+   + KPG  V VVG GGLGH+AV+
Sbjct: 126 VVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANV-KPGKWVAVVGAGGLGHMAVQ 184

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           +AKAMG +V  I+ S  K  E  ++LGAD  + S D D ++A     D IIDTV     L
Sbjct: 185 YAKAMGAEVIAITRSEEKL-ELAKKLGADHVINSSDSDALEAVKEIADAIIDTVGP-ATL 242

Query: 121 MPLIGLLKSQGKLVLLGAP--EKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKH 178
            P +  L+  G LVL+G P       LPAF L+  E  + GSL+G   + +E +DFAA+ 
Sbjct: 243 EPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEG 302

Query: 179 NIRADI-EVIPADYVNTAMERLAKADVRYRFVID 211
            I+ +I E IP D +N A ER+ K  VR R VID
Sbjct: 303 KIKPEILETIPLDEINEAYERMEKGKVRGRAVID 336

Length = 339

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  161 bits (410), Expect = 1e-48
 Identities = 74/214 (34%), Positives = 116/214 (54%), Gaps = 8/214 (3%)

Query: 1   MVADEHFVVRIPEGAPLDAT--APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVA 58
           M+A    + RIP+   LDA   APLLCAG+T ++ LR  G  KPG  V V G+GGLGH+A
Sbjct: 123 MLAPAEALARIPDD--LDAAEAAPLLCAGVTTFNALRNSGA-KPGDLVAVQGIGGLGHLA 179

Query: 59  VKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQA--AMGTMDGIIDTVSA 116
           V++A  MG +   IS    K   A + LGA  ++ +  +D  +A   +G    I+ T   
Sbjct: 180 VQYAAKMGFRTVAISRGSDKADLARK-LGAHHYIDTSKEDVAEALQELGGAKLILATAPN 238

Query: 117 VHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAA 176
              +  L+G L  +GKL++LGA  +P+ +    L+ G K + G   G   ++++ + F+A
Sbjct: 239 AKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKFSA 298

Query: 177 KHNIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
            H +R  +E  P +  N A +R+     R+R V+
Sbjct: 299 LHGVRPMVETFPLEKANEAYDRMMSGKARFRVVL 332

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  150 bits (382), Expect = 2e-44
 Identities = 73/219 (33%), Positives = 117/219 (53%), Gaps = 9/219 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAV 59
            +AD  +V  IP+G   +  APLLCAG+TVY  L+  GL KPG  V + G GG LGH+ V
Sbjct: 125 AIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKAGL-KPGDWVVISGAGGGLGHLGV 183

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTM--DGIIDTV 114
           ++AKAMG++V  I     K  E  + LGAD+F+  +  D    ++   G      ++ T 
Sbjct: 184 QYAKAMGLRVIAIDVGDEKL-ELAKELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTA 242

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGEKIVGGSLIGGLKETQEMID 173
            +       +  L+  G LV +G P    + L  F L+     + GSL+G  ++ QE ++
Sbjct: 243 VSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGTRQDLQEALE 302

Query: 174 FAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV 212
           FAA+  ++  I+V+P + +N   E++ +  +  R V+D 
Sbjct: 303 FAARGKVKPHIQVVPLEDLNEVFEKMEEGKIAGRVVVDF 341

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  115 bits (290), Expect = 6e-31
 Identities = 67/212 (31%), Positives = 100/212 (47%), Gaps = 11/212 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVADE F   IPE    +  APLLCAGI  Y  L+  GL KPG  +G+ G G   H+A++
Sbjct: 127 MVADERFAYPIPEDYDDEEAAPLLCAGIIGYRALKLAGL-KPGQRLGLYGFGASAHLALQ 185

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            A+  G +V   + S   +  A E LGAD    S D          +D  I        +
Sbjct: 186 IARYQGAEVFAFTRSGEHQELARE-LGADWAGDSDDLPP-----EPLDAAIIFAPVGALV 239

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGEKIVGGSLIGGLKETQEMIDFAAKH 178
              +  +K  G++VL G       +PAF   LL GEK +        ++ +E +  AA+ 
Sbjct: 240 PAALRAVKKGGRVVLAGIHMSD--IPAFDYELLWGEKTIRSVANLTRQDGEEFLKLAAEI 297

Query: 179 NIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
            I+ ++E  P +  N A++ L +  +R   V+
Sbjct: 298 PIKPEVETYPLEEANEALQDLKEGRIRGAAVL 329

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  114 bits (289), Expect = 1e-30
 Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 11/216 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK-PGMHVGVVGLGGLGHVAVK 60
           V     V       P++A APL  AG+T Y  ++       PG  V V+G+GGLGH+AV+
Sbjct: 127 VPSRRLVKLPRGLDPVEA-APLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQ 185

Query: 61  FAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTV 114
             +A+    V  +  S      A ERLGAD  L + D D ++       G     +ID V
Sbjct: 186 ILRALTPATVIAVDRSEEALKLA-ERLGADHVLNASD-DVVEEVRELTGGRGADAVIDFV 243

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDF 174
            +   L     LL   G+ V++G       LP   L+  E  V GSL G   E  E++  
Sbjct: 244 GSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEISVIGSLWGTRAELVEVVAL 302

Query: 175 AAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
           A    ++ +I   P +  N A++RL +  V  R V+
Sbjct: 303 AESGKVKVEITKFPLEDANEALDRLREGRVTGRAVL 338

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 99.6 bits (249), Expect = 8e-25
 Identities = 65/217 (29%), Positives = 99/217 (45%), Gaps = 12/217 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V    ++V  P G      A L C+G+T YS ++          V ++G GGLG +A+  
Sbjct: 136 VPHSRYLV-DPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALAL 194

Query: 62  AKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE----MQAAMGTMDGIIDTVSA 116
            KA+G   + V+    +K  EA +  GAD  +   D D     ++AA G +D +ID V+ 
Sbjct: 195 LKALGPANIIVVDIDEAKL-EAAKAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNN 253

Query: 117 VHPLMPLIGLLKSQGKLVLLG--APEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDF 174
                    +L   GKLVL+G    E  L LP  PL      + GS +G L+E +E++  
Sbjct: 254 SATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPL--RALTIQGSYVGSLEELRELVAL 311

Query: 175 AAKHNI-RADIEVIPADYVNTAMERLAKADVRYRFVI 210
           A    +    +   P   VN A++ L    V  R V+
Sbjct: 312 AKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVL 348

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 95.5 bits (238), Expect = 7e-24
 Identities = 56/179 (31%), Positives = 85/179 (47%), Gaps = 6/179 (3%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V     +V +P+G  L+  A L     T Y  LR  G+ KPG  V V+G GG+G +A +
Sbjct: 93  VVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQ 152

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGT----MDGIIDTVSA 116
            AKA G +V V   S  K  E  + LGAD  +  +++D  +    T     D +ID V  
Sbjct: 153 LAKAAGARVIVTDRSDEKL-ELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG 211

Query: 117 VHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF-PLLTGEKIVGGSLIGGLKETQEMIDF 174
              L   + LL+  G++V++G       L     LL  E  + GS  G  ++ +E +D 
Sbjct: 212 PETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTREDFEEALDL 270

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 95.4 bits (238), Expect = 2e-23
 Identities = 66/221 (29%), Positives = 94/221 (42%), Gaps = 19/221 (8%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V     +V +P+G P    A    A +T Y  +   G  KPG  V V+GLGGLG  AV+ 
Sbjct: 125 VVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQI 184

Query: 62  AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTV------- 114
           AKAMG  V  +     K   A E LGAD  L S D          + G  D +       
Sbjct: 185 AKAMGAAVIAVDIKEEKLELAKE-LGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQ 243

Query: 115 ----SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQE 170
                A          +K  G++V++G     L +    L+  E  + GS  G  ++  E
Sbjct: 244 PTFEDAQK-------AVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPE 296

Query: 171 MIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
           ++D  AK  +   +E  P D +   +ERL K  V+ R V+ 
Sbjct: 297 VLDLIAKGKLDPQVETRPLDEIPEVLERLHKGKVKGRVVLV 337

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 80.3 bits (199), Expect = 4e-18
 Identities = 57/212 (26%), Positives = 90/212 (42%), Gaps = 9/212 (4%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
           V     +   P     +  A L  AG+T +  L   G  K G  V + G  GG+G  AV+
Sbjct: 104 VVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQ 163

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD-EMQAAMGTMDGIIDTVSAVHP 119
            AKA G +  VI+T+ +  ++ +  LGAD  +     D E  AA G +D ++DTV     
Sbjct: 164 LAKARGAR--VIATASAANADFLRSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGG-ET 220

Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHN 179
           L   + L+K  G+LV +  P    +      +    +        L E  E+++      
Sbjct: 221 LARSLALVKPGGRLVSIAGPPPAEQAAKRRGVRAGFVFVEPDGEQLAELAELVE---AGK 277

Query: 180 IRADI-EVIPADYVNTAMERLAKADVRYRFVI 210
           +R  +  V P +    A ERL     R + V+
Sbjct: 278 LRPVVDRVFPLEDAAEAHERLESGHARGKVVL 309

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 6/131 (4%)

Query: 53  GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTM-- 107
           G+G  AV+ AKA+G    +      +K E  + LGAD  +  RD+D    ++   G    
Sbjct: 1   GVGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYRDEDFVERVRELTGGRGV 60

Query: 108 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KPLELPAFPLLTGEKIVGGSLIGGLK 166
           D +ID V A   L   + LL+  G++V++G P   P+  P   LL  E  + GSL GG +
Sbjct: 61  DVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLGGGRE 120

Query: 167 ETQEMIDFAAK 177
           E +E ++  A 
Sbjct: 121 EFEEALELLAS 131

Length = 131

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 6/213 (2%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
              E  +V++P+    ++ A   C   T    L+  G+ K G  V V G  GG+G  A++
Sbjct: 123 KVPERSLVKLPDNVSDESAALAACVVGTAVHALKRAGV-KKGDTVLVTGAGGGVGIHAIQ 181

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            AKA+G +V  ++ SP K  + ++ LGAD  +      E    +G  D +I+ V +   +
Sbjct: 182 LAKALGARVIAVTRSPEKL-KILKELGADYVIDGSKFSEDVKKLGGADVVIELVGS-PTI 239

Query: 121 MPLIGLLKSQGKLVLLGAPE-KPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHN 179
              +  L   G+LVL+G     P  L    L+  E  + GS+     + +E +    +  
Sbjct: 240 EESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGK 299

Query: 180 IRADIE-VIPADYVNTAMERLAKADVRYRFVID 211
           I+  I+ V+  + +N A+E L    V  R V+ 
Sbjct: 300 IKPVIDRVVSLEDINEALEDLKSGKVVGRIVLK 332

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 60/217 (27%), Positives = 114/217 (52%), Gaps = 13/217 (5%)

Query: 2   VADEHFVVRIPEG-APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            AD  + V++PEG  P  A++ + CAG+T Y  ++  G+ KPG  + + G GGLG++A++
Sbjct: 125 TAD--YAVKVPEGLDPAQASS-ITCAGVTTYKAIKVSGI-KPGQWIAIYGAGGLGNLALQ 180

Query: 61  FAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD----EMQAAMGTMDGIIDTVS 115
           +AK     KV  +  +  K + A E +GAD  + S+  +     +Q   G     + T  
Sbjct: 181 YAKNVFNAKVIAVDINDDKLALAKE-VGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAV 239

Query: 116 AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL-LTGEKIVGGSLIGGLKETQEMIDF 174
           A       +  +++ G++V +G P + ++L    L L G ++V GSL+G  ++ +E   F
Sbjct: 240 AKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEVV-GSLVGTRQDLEEAFQF 298

Query: 175 AAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
            A+  +   +++ P + +N   + + +  ++ R VID
Sbjct: 299 GAEGKVVPKVQLRPLEDINDIFDEMEQGKIQGRMVID 335

Length = 338

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 16/218 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  E  +V+I   APL+    L C   T    +      +PG  V V GLGG+G  A++
Sbjct: 144 TVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQ 203

Query: 61  FAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTV 114
            AKA G  ++  +  +P K   A ++ GA  F+  ++ D++  A+     G  D   + V
Sbjct: 204 GAKAAGAGRIIAVDINPEKLELA-KKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECV 262

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPE--KPLELPAFPLLTGEKIVGGSLIGGLK---ETQ 169
             V  +   +      G  V++G     + +    F L+TG     GS  GG +   +  
Sbjct: 263 GNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWK-GSAFGGARPRSDIP 321

Query: 170 EMIDFAAKHNIRAD---IEVIPADYVNTAMERLAKADV 204
            ++D      +  D      IP + +N A + + +   
Sbjct: 322 RLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKS 359

Length = 366

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 71.2 bits (175), Expect = 1e-14
 Identities = 64/228 (28%), Positives = 100/228 (43%), Gaps = 18/228 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAV 59
           +V    ++V +P+G   +  A L  AG+T +  L      KPG  V V G  GG+G  A+
Sbjct: 101 VVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAI 160

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTM-----DGIIDTV 114
           + AKA+G  V V   S S+K E ++ LGAD  +  R++D ++           D ++DTV
Sbjct: 161 QLAKALGATV-VAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGEKIVGGSLIGGL------K 166
                    +  L   G+LV +GA     P+ L   PLL     + G  +G        +
Sbjct: 220 GG-DTFAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAE 278

Query: 167 ETQEMIDFAAKHNIRADI-EVIP-ADYVNTAMERLAKADVRYRFVIDV 212
              E+ D  A   ++  I  V P A+    A   L +     + V+ V
Sbjct: 279 ALAELFDLLASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV 326

Length = 326

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 67.6 bits (166), Expect = 2e-13
 Identities = 60/211 (28%), Positives = 88/211 (41%), Gaps = 14/211 (6%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVK 60
           VA E  + + PEG   +  A L  AG+T    LR  G  KPG  V + G  GG+G  AV+
Sbjct: 103 VAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQ 162

Query: 61  FAKAMGVKVTVI-STSPSKKSEAVERLGADSFLVSRDQD--EMQAAMGTMDGIIDTVSAV 117
            AKA+G  VT + ST   + +E V  LGAD  +    +D   + A     D I D V   
Sbjct: 163 IAKALGAHVTGVCST---RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNS 219

Query: 118 HP-LMPLIGLLKSQGKLVLLGAPEK-----PLELPAFPLLTGEKIVGGSLIGGLKETQEM 171
              L      LK  G+ V +G          L LP      G ++         ++ +++
Sbjct: 220 PFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQL 279

Query: 172 IDFAAKHNIRADI-EVIPADYVNTAMERLAK 201
            +   +  ++  I  V P +    A  RL  
Sbjct: 280 AELVEEGKLKPVIDSVYPLEDAPEAYRRLKS 310

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 47/192 (24%), Positives = 81/192 (42%), Gaps = 13/192 (6%)

Query: 2   VADEHFVVRIPEGAPLDATA--PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAV 59
           V  +  + ++P+G   +A A    L      ++        +PG  V VVG G +G +A+
Sbjct: 129 VPADFNLAKLPDGIDEEAAALTEPLATAYHGHA---ERAAVRPGGTVVVVGAGPIGLLAI 185

Query: 60  KFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDT 113
             AK +G   V V+  SP +   A E  GAD  +   + D     +    G     +I+ 
Sbjct: 186 ALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEA 245

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLE-LPAFPLLTGEKIVGGSLIGGLKET-QEM 171
           V +   L   +  L+  G +V++G        LPA  +++ E  + GSL    +E  +  
Sbjct: 246 VGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERA 305

Query: 172 IDFAAKHNIRAD 183
           +D  A   I  +
Sbjct: 306 LDLLASGKIDPE 317

Length = 350

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 15/224 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V     +  +PE      +A L CAG T Y  L+     +PG  V V+G+GG+G  A++
Sbjct: 146 AVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQ 205

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTM--DGIIDTVS 115
            AKA G    +      +K    + LGA   + +  +D    ++   G    D +++ + 
Sbjct: 206 LAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREITGGRGVDVVVEALG 265

Query: 116 AVHPLMPLIGLLKSQGKLVL--LGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEM-- 171
                   + +++  G+ V+  L       E+P   L+     + GS   G +  Q++  
Sbjct: 266 KPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSY--GARPRQDLPE 323

Query: 172 -IDFAAKHNIRADIEV---IPADYVNTAMERLAKADVRYRFVID 211
            +  AA   +  +  V      + +N A E L K  +  R +++
Sbjct: 324 LVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE 367

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 60.8 bits (148), Expect = 5e-11
 Identities = 54/214 (25%), Positives = 96/214 (44%), Gaps = 12/214 (5%)

Query: 4   DEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFA 62
               +V++P     +    + C    VY  LR  G+ K G  V V G  GG+G  A++ A
Sbjct: 125 KVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRAGV-KKGETVLVTGAGGGVGIHAIQVA 183

Query: 63  KAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP 122
           KA+G KV  +++S SK  + V +  AD  +V     E    +G  D +I+TV     L  
Sbjct: 184 KALGAKVIAVTSSESKA-KIVSKY-ADYVIVGSKFSEEVKKIGGADIVIETV-GTPTLEE 240

Query: 123 LIGLLKSQGKLVLLG----APEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKH 178
            +  L   GK++ +G    +P   L L  + +L   +I+ G +    ++ +E +   A+ 
Sbjct: 241 SLRSLNMGGKIIQIGNVDPSPTYSLRL-GYIILKDIEII-GHISATKRDVEEALKLVAEG 298

Query: 179 NIRADIEV-IPADYVNTAMERLAKADVRYRFVID 211
            I+  I   +    ++ A+E L       + ++ 
Sbjct: 299 KIKPVIGAEVSLSEIDKALEELKDKSRIGKILVK 332

Length = 334

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 45/159 (28%), Positives = 63/159 (39%), Gaps = 17/159 (10%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVG-----VVGLGGLGH 56
           V D   V+ +P+    +  A L CAG+T Y  L      K  +  G       G GG+G 
Sbjct: 101 VVDARAVLPLPDSLSFEEAAALPCAGLTAYQALF----KKLRIEAGRTILITGGAGGVGS 156

Query: 57  VAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----II 111
            AV+ AK  G  + VI+T   +  E V+ LGAD  +   D+D  +       G     ++
Sbjct: 157 FAVQLAKRAG--LRVITTCSKRNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVL 214

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL 150
           DTV        L   L   G LV +         P F  
Sbjct: 215 DTVGGETAAA-LAPTLAFNGHLVCIQGRPDASPDPPFTR 252

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 57.8 bits (140), Expect = 6e-10
 Identities = 55/210 (26%), Positives = 92/210 (43%), Gaps = 14/210 (6%)

Query: 8   VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV 67
           VV+I +  PL+  A   CA +T    +      +PG  V VVGLGG+G  A+  A A G 
Sbjct: 157 VVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGA 216

Query: 68  -KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ----AAMGTMDGIIDTVSAVHPLMP 122
            +V  +  +  K + A E LGA + + + D + ++       G +D   +   +V  L  
Sbjct: 217 SQVVAVDLNEDKLALARE-LGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALET 275

Query: 123 LIGLLKSQGKLVLLG--APEKPLELPAFPLLTGEKIVGGSLIGGLKETQEM---IDFAAK 177
              + +  G  V  G   PE  L +PA  L+  E+ + GS +G     +++   +     
Sbjct: 276 AYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLS 335

Query: 178 HNIRAD---IEVIPADYVNTAMERLAKADV 204
             +  D      +P D +N   +RLA  + 
Sbjct: 336 GRLPVDKLLTHRLPLDEINEGFDRLAAGEA 365

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 57.6 bits (140), Expect = 6e-10
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 9/172 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  E  VV+I +  PLD  A L C   T    +      +PG  V V+G GG+G  A++
Sbjct: 141 TVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQ 200

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGI-----IDTV 114
            A+  G  ++  +   P K  E   R GA   + + + D ++A     DG       + V
Sbjct: 201 GARIAGASRIIAVDPVPEKL-ELARRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAV 259

Query: 115 SAVHPLMPLIGLLKSQGKLVLLG--APEKPLELPAFPLLTGEKIVGGSLIGG 164
                +   + + +  G  V++G   P + + LPA  L   EK + GSL G 
Sbjct: 260 GRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGS 311

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V  E  +VR P+    +  A L CAG+T ++ L   G  KPG  V V G GG+   A++F
Sbjct: 120 VLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQF 179

Query: 62  AKAMGVKVTVISTSPSKKSEAVERLGAD 89
           AKA G +V + ++S  +K E  + LGAD
Sbjct: 180 AKAAGARV-IATSSSDEKLERAKALGAD 206

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 10/182 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
           V     +V +P+G   +  A L    +T Y  L      K G  V V G  G +GH AV+
Sbjct: 104 VVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQ 163

Query: 61  FAKAMGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTV 114
            A+  G    VI+T S ++ +E V + GAD+    R +D     +    G     II+ +
Sbjct: 164 LARWAG--ARVIATASSAEGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVL 221

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDF 174
           + V+ L   + +L   G++V+ G+      +P  PL+  E  + G L+      +     
Sbjct: 222 ANVN-LAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAAA 280

Query: 175 AA 176
            A
Sbjct: 281 EA 282

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 2/99 (2%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAV 59
           +V     V  +P+G   +  A L     T Y  L      +PG  V V+G  GG+G  AV
Sbjct: 98  VVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAV 157

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD 98
           + AKA+G +V   ++S  +K      LGAD  +  RD D
Sbjct: 158 QLAKALGARVIAAASSE-EKLALARALGADHVIDYRDPD 195

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 54.6 bits (132), Expect = 7e-09
 Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 8   VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG- 66
           +VR+P+  P +  AP  CA  TV + L   G    G  V V G G LG  AV  AK  G 
Sbjct: 143 IVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGA 202

Query: 67  VKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMD 108
            +V VI  SP +  E     GAD+ +   +  + Q      D
Sbjct: 203 RRVIVIDGSPERL-ELAREFGADATIDIDELPDPQRRAIVRD 243

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 54.2 bits (131), Expect = 9e-09
 Identities = 37/166 (22%), Positives = 70/166 (42%), Gaps = 21/166 (12%)

Query: 8   VVRIPEGAPLDATA---PLLCAGITVY-SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAK 63
           +++IP+    +  A   P   A   V  + +        G  V V+G G +G +A+++ K
Sbjct: 127 LIKIPDHVDYEEAAMIEPAAVALHAVRLAGI------TLGDTVVVIGAGTIGLLAIQWLK 180

Query: 64  AMGVK-VTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVSAV 117
            +G K V  +     +K      LGAD  +  +++D  +      +G     +I+   + 
Sbjct: 181 ILGAKRVIAVDID-DEKLAVARELGADDTINPKEEDV-EKVRELTEGRGADLVIEAAGSP 238

Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP---LLTGEKIVGGS 160
             +   + L +  GK+VL+G P   + L       +L  E  + GS
Sbjct: 239 ATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGS 284

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 15/192 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
           +V   + V ++P+  PL+  A   PL  A    +  +R  G  KPG    V+G G +G +
Sbjct: 133 VVVPAYHVHKLPDNVPLEEAALVEPLAVA----WHAVRRSGF-KPGDTALVLGAGPIGLL 187

Query: 58  AVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGII 111
            +   KA G  K+ V   S +++ E  E LGA   L   + D +         G +D   
Sbjct: 188 TILALKAAGASKIIVSEPSEARR-ELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSF 246

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEM 171
           D       L   I  L+ +G  V +   EKP+      L+  EK + GS+    ++ +E+
Sbjct: 247 DCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFEEV 306

Query: 172 IDFAAKHNIRAD 183
           ID  A   I A+
Sbjct: 307 IDLLASGKIDAE 318

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 50/228 (21%), Positives = 81/228 (35%), Gaps = 36/228 (15%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V  E  + +I   APL+    + C   T Y          PG    V GLGG+G   +  
Sbjct: 143 VVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMG 202

Query: 62  AKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQD--------EMQA--------AM 104
            KA G  ++  +  +  K  +A + LGA   +  RDQD        EM           +
Sbjct: 203 CKAAGASRIIAVDINKDKFEKAKQ-LGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVI 261

Query: 105 GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP-LLTGEKIVGGSLIG 163
           G+ D +   + A              G  V++G P    E    P  L   + + G++ G
Sbjct: 262 GSADTLKQALDATR---------LGGGTSVVVGVPPSGTEATLDPNDLLTGRTIKGTVFG 312

Query: 164 GLKETQEMI----DFAAKHNIRAD---IEVIPADYVNTAMERLAKADV 204
           G K    +      +  K     D     V+P + +N   + +   + 
Sbjct: 313 GWKSKDSVPKLVALYRQK-KFPLDELITHVLPFEEINDGFDLMRSGES 359

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 59/234 (25%), Positives = 96/234 (41%), Gaps = 36/234 (15%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V DE++V +I   APL+    L C   T Y         +PG  V V GLG +G  A+ 
Sbjct: 143 TVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIM 202

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQD----EMQAAM----------- 104
            AK  G  ++  +  +  K  +A +  GA  F+  +D D    E+   M           
Sbjct: 203 GAKIAGASRIIGVDINEDKFEKA-KEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFEC 261

Query: 105 -GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGEKIVGGSLI 162
            G  D + + + +              G  V++G P    L +  F L+ G +   GS  
Sbjct: 262 TGNADLMNEALESTK---------LGWGVSVVVGVPPGAELSIRPFQLILG-RTWKGSFF 311

Query: 163 GGLKETQEMIDFAAKH-NIRADIE-----VIPADYVNTAMERLAKADVRYRFVI 210
           GG K   ++    +K+ N + D++     V+P + +N   + L K+    R VI
Sbjct: 312 GGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFD-LMKSGECIRTVI 364

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 53.0 bits (128), Expect = 2e-08
 Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 6/146 (4%)

Query: 9   VRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK 68
           VR+P+       A L C   T +  L      KPG  V V G GG+G  AV  A A+G +
Sbjct: 132 VRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGAR 191

Query: 69  VTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTVSAVHPLMPL 123
           V  +     K   A E LGA + + + + +++ AA+     G     +D +         
Sbjct: 192 VIAVDIDDDKLELARE-LGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIPETCRNS 250

Query: 124 IGLLKSQGKLVLLGAPEKPLELPAFP 149
           +  L+ +G+ V +G         A P
Sbjct: 251 VASLRKRGRHVQVGLTLGEEAGVALP 276

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 54/185 (29%), Positives = 81/185 (43%), Gaps = 21/185 (11%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLC-----AGITVYSPLRFYGLDKPGMHVGVVGLGGLG 55
            V  E  VV++ +  PL+  APL C     AG  V + L+     +PG  + V G G +G
Sbjct: 145 AVVHERNVVKVDKDVPLELLAPLGCGIQTGAG-AVLNVLK----PRPGSSIAVFGAGAVG 199

Query: 56  HVAVKFAKAMGVK-VTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGT-MDGI 110
             AV  AK  G   +  +    S+   A E LGA   +  +++D    ++   G  +D  
Sbjct: 200 LAAVMAAKIAGCTTIIAVDIVDSRLELAKE-LGATHVINPKEEDLVAAIREITGGGVDYA 258

Query: 111 IDTVSAVHPLMPLIGLLKSQGKLVLLGAP--EKPLELPAFPLLT-GEKIVGGSLIGGLKE 167
           +DT      +   +  L  +G L L+GAP     + L    LL  G+ I G  +I G   
Sbjct: 259 LDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRG--VIEGDSV 316

Query: 168 TQEMI 172
            QE I
Sbjct: 317 PQEFI 321

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 22/186 (11%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAV 59
           +V  E  + +IP+    +  A L  A +T Y  L+  GL  PG  V V G  G  G  AV
Sbjct: 122 IVVPEKNLFKIPDSISDELAASLPVAALTAYHALKTAGL-GPGETVVVFGASGNTGIFAV 180

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           + AK MG +V  +S     + + ++  GAD  +   D DE++  +  +  + D V  ++ 
Sbjct: 181 QLAKMMGAEVIAVS-----RKDWLKEFGADEVV---DYDEVEEKVKEITKMADVV--INS 230

Query: 120 LMPLI-----GLLKSQGKLVLLGA---PEKPLELPAFPLLTGEKIVGGSLIGGLKETQEM 171
           L          +L   G+LV  G     E  L+L    L + +  + GS  G  KE  E+
Sbjct: 231 LGSSFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSD--LYSKQISIIGSTGGTRKELLEL 288

Query: 172 IDFAAK 177
           +  A  
Sbjct: 289 VKIAKD 294

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV-GLGGLGHVAV 59
            V D   +   P    +   A L   GIT +  L      + G  V +  G GG+GHVAV
Sbjct: 103 AVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAV 162

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGAD 89
           + AKA G +  V +T+ S+K+     LGAD
Sbjct: 163 QLAKAAGAR--VYATASSEKAAFARSLGAD 190

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 11/191 (5%)

Query: 4   DEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFA 62
           D  ++V +PEG        L+   +T Y  L        G  V + G  GG+G   ++ A
Sbjct: 101 DAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELA 160

Query: 63  KAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD--EMQAAMGTMDGIIDTVSAVHPL 120
              G    V  T+  +   A+  LGA + +  R +D        G +D + D V      
Sbjct: 161 LLAG--AEVYGTASERNHAALRELGA-TPIDYRTKDWLPAMLTPGGVDVVFDGVGGES-Y 216

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
                 L   G LV  G     L+        G  +   + +  L         A  + +
Sbjct: 217 EESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLL----PTGRRATFYYV 272

Query: 181 RADIEVIPADY 191
             D    P  +
Sbjct: 273 WRDRAEDPKLF 283

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 52/200 (26%), Positives = 77/200 (38%), Gaps = 18/200 (9%)

Query: 7   FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG 66
           F  R+P G      APLLCAGI  Y  L    L  PG  +G+ G GG  H+  + A A G
Sbjct: 131 FAYRLPTGYDDVELAPLLCAGIIGYRALLRASL-PPGGRLGLYGFGGSAHLTAQVALAQG 189

Query: 67  VKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGL 126
             V V++   + +  A+  LGA S                +D  I    A   + P +  
Sbjct: 190 ATVHVMTRGAAARRLALA-LGAASA-----GGAYDTPPEPLDAAILFAPAGGLVPPALEA 243

Query: 127 LKSQGKLVLLGAPEKPLELPAFPLLT------GEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           L   G L + G     + L   P L        E+ +         + +E ++ AA+H +
Sbjct: 244 LDRGGVLAVAG-----IHLTDTPPLNYQRHLFYERQIRSVTSNTRADAREFLELAAQHGV 298

Query: 181 RADIEVIPADYVNTAMERLA 200
           R      P    + A+  L 
Sbjct: 299 RVTTHTYPLSEADRALRDLK 318

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 51/166 (30%), Positives = 73/166 (43%), Gaps = 9/166 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
                 V+ +PEG  L   A L     TV+S L   G  K G  V +  G  G+G  A++
Sbjct: 99  AVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQ 158

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVS 115
            AKA G +V   + S  +K  A E LGAD  +  R++D ++       G     I+D V 
Sbjct: 159 LAKAFGARVFTTAGSD-EKCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVG 217

Query: 116 AVHPLMPLIGLLKSQGKLVLLGAPE-KPLELPAFPLLTGEKIVGGS 160
             + L   I  L   G++V +G    +  EL   PLL     + GS
Sbjct: 218 GSY-LNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGS 262

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 18/143 (12%)

Query: 2   VADEHFVVRIPEGAPLD--ATAPLLCAGITVYSPLRFYGLD----KPGMHVGVVGLGGLG 55
           V   + +V +P+G P +  A   L    +         G+     + G  V VVGLG +G
Sbjct: 59  VVPANLLVPLPDGLPPERAALTALAATALN--------GVRDAEPRLGERVAVVGLGLVG 110

Query: 56  HVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTV 114
            +A + AKA G    V+   P   + E  E LG  +  V+ D  +     G  D +I+  
Sbjct: 111 LLAAQLAKAAGA-REVVGVDPDAARRELAEALGP-ADPVAADTADEIGGRG-ADVVIEAS 167

Query: 115 SAVHPLMPLIGLLKSQGKLVLLG 137
            +   L   + LL+ +G++VL+G
Sbjct: 168 GSPSALETALRLLRDRGRVVLVG 190

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 48.2 bits (116), Expect = 9e-07
 Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
           V     ++ +PEG  L   A L     T +  L   G  K G  V +  G  G+G  A++
Sbjct: 99  VVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQ 158

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVS 115
            AKA+G +V   + S   K EA   LGAD  +  R +D  +       G     I+D V 
Sbjct: 159 LAKALGARVIATAGSEE-KLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVG 217

Query: 116 AVHPLMPLIGLLKSQGKLVLLG 137
             + L   +  L   G+LVL+G
Sbjct: 218 GDY-LARNLRALAPDGRLVLIG 238

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 50/189 (26%), Positives = 87/189 (46%), Gaps = 9/189 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           M+  E  ++ +P+       A LLC   T Y  LR  G+      V VVG G +G  A+ 
Sbjct: 123 MLVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVGV-SGRDTVLVVGAGPVGLGALM 181

Query: 61  FAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTV 114
            A+A+G +  VI   PS ++ E  + LGAD F+++  QD++Q       G      I+  
Sbjct: 182 LARALGAE-DVIGVDPSPERLELAKALGAD-FVINSGQDDVQEIRELTSGAGADVAIECS 239

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDF 174
                    +  ++  G+LVL+G   +     +  L+  ++ + GS    + + +E  +F
Sbjct: 240 GNTAARRLALEAVRPWGRLVLVGEGGELTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEF 299

Query: 175 AAKHNIRAD 183
            A+H +  D
Sbjct: 300 LARHKLEVD 308

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 59/233 (25%), Positives = 90/233 (38%), Gaps = 52/233 (22%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLC-------AGITVYSPLRFYGLDKPGMHVGVVGLGGL 54
           V     V +I   APLD    L C       A   V          K G  V + GLG +
Sbjct: 147 VVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKV-------KKGSTVAIFGLGAV 199

Query: 55  GHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQD----EMQAAM----- 104
           G    + A+  G  ++  +  +PSK  +A ++ G   F+  +D D    E+ A M     
Sbjct: 200 GLAVAEGARIRGASRIIGVDLNPSKFEQA-KKFGVTEFVNPKDHDKPVQEVIAEMTGGGV 258

Query: 105 -------GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGEK 155
                  G +D +I     VH            G  VLLG P K       P  LL G  
Sbjct: 259 DYSFECTGNIDAMISAFECVHD---------GWGVTVLLGVPHKDAVFSTHPMNLLNGRT 309

Query: 156 IVGGSLIGGLKETQEMIDFAAKHNIRADIEV-------IPADYVNTAMERLAK 201
           +  G+L GG K   ++ +   K+ ++ ++E+       +P   +N A + L K
Sbjct: 310 LK-GTLFGGYKPKTDLPNLVEKY-MKKELELEKFITHELPFSEINKAFDLLLK 360

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 45.7 bits (109), Expect = 6e-06
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 12/159 (7%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVK 60
           +     VV++P+G      A L    +T Y  L      +PG  V +      +G  A++
Sbjct: 104 LVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQ 163

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVS 115
            A A G  V   + +  K+   +  LGA   +V+ ++D +   +    G     + D V 
Sbjct: 164 IANAAGATVIATTRTSEKRDALLA-LGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVG 222

Query: 116 AVHPLMP-LIGLLKSQGKLVLLGAPEKPLELPAFPLLTG 153
              P    L   L   G LV+ GA     E   FPL   
Sbjct: 223 G--PQFAKLADALAPGGTLVVYGAL--SGEPTPFPLKAA 257

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 45.4 bits (108), Expect = 7e-06
 Identities = 44/164 (26%), Positives = 67/164 (40%), Gaps = 15/164 (9%)

Query: 8   VVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKA 64
           +  +PE   L+A A   PL  A   V          +PG  V V G G +G +A + AK 
Sbjct: 131 LHELPENLSLEAAALTEPLAVAVHAVAERSGI----RPGDTVVVFGPGPIGLLAAQVAKL 186

Query: 65  MGVKVTVISTSPSKKSEAV-ERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVSAVH 118
            G  V V+ T   +    V + LGAD+      +D  +      DG     +I+   AV 
Sbjct: 187 QGATVVVVGTEKDEVRLDVAKELGADAVNGGE-EDLAELVNEITDGDGADVVIECSGAVP 245

Query: 119 PLMPLIGLLKSQGKLVLLG-APEKPLELPAFPLLTGEKIVGGSL 161
            L   + LL+  G++V +G        +    ++  E  V GS 
Sbjct: 246 ALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSR 289

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 26/164 (15%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
                 V  +P+G   +  A      +T Y  L   G  +PG  V V    GG+G  A +
Sbjct: 98  NVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQ 157

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EM-QAAMGTMDGIIDTVSA 116
             K +   VTV+ T+ + K EA++  G    +  R QD   E+ + +   +D ++D    
Sbjct: 158 LCKTVPN-VTVVGTASASKHEALKENGVTHVIDYRTQDYVEEVKKISPEGVDIVLD---- 212

Query: 117 VHPLMP-----LIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEK 155
              L          LLK  G+LV+ GA           L+TGEK
Sbjct: 213 --ALGGEDTRKSYDLLKPMGRLVVYGAAN---------LVTGEK 245

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 8/144 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAV 59
           +VA    ++ +P+    +  A L    +T +  L  Y    PG  V        +G + +
Sbjct: 97  VVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLI 156

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTV 114
           + AK +G K   +     +  E ++ LGAD  + S  +D  Q              +D V
Sbjct: 157 QLAKLLGFKTINVVRRDEQVEE-LKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAV 215

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGA 138
                   L   L+  G LV  G 
Sbjct: 216 GGESAT-RLARSLRPGGTLVNYGL 238

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 4/100 (4%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
           VA +  V+ IP+G   +  A +  A +T +  L+ +G  K G  V +  G  G+G  A +
Sbjct: 100 VAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQ 159

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM 100
            A+  G   T+I+TS  +K +  ++L A   ++ R  DE 
Sbjct: 160 LAEKYGA-ATIITTSSEEKVDFCKKLAA--IILIRYPDEE 196

Length = 334

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 46/140 (32%), Positives = 63/140 (45%), Gaps = 10/140 (7%)

Query: 3   ADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKF 61
           A+  + V  P      AT P  C+  T  + L   G+   G  V V G  GG+G   V+ 
Sbjct: 141 AENAYPVNSPLSDVELATFP--CSYSTAENMLERAGV-GAGETVLVTGASGGVGSALVQL 197

Query: 62  AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV--HP 119
           AK  G  V  +    + K EAV  LGAD+  + RD   +  A       +D V+ V   P
Sbjct: 198 AKRRGAIVIAV-AGAA-KEEAVRALGADTV-ILRDAPLLADAKALGGEPVDVVADVVGGP 254

Query: 120 LMP-LIGLLKSQGKLVLLGA 138
           L P L+ LL+  G+ V  GA
Sbjct: 255 LFPDLLRLLRPGGRYVTAGA 274

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 43  GMHVGVVGLGGLG-HVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ 101
           G  V +VGLG +G  +A + AKA G++V  +  S       V+ +           DE+ 
Sbjct: 134 GKTVLIVGLGDIGREIA-RRAKAFGMRVIGVRRSGRPAPPVVDEV--------YTPDELD 184

Query: 102 AAMGTMDGII 111
             +   D ++
Sbjct: 185 ELLPEADYVV 194

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 43.7 bits (104), Expect = 3e-05
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 48  VVGLGGLGHVAVKFAKAMGVKVTVISTS--PSKKSEAVERLGADSFLVSRDQDEMQAAMG 105
           V+G G +G +A    +  G +V V++    P  K++ VE LGA     S+        +G
Sbjct: 178 VLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVG 237

Query: 106 TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLT----GEKIVGG 159
             D II+           +  L   G ++L G P      E+    L      G K + G
Sbjct: 238 EFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVG 297

Query: 160 S 160
           S
Sbjct: 298 S 298

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 48/175 (27%), Positives = 75/175 (42%), Gaps = 13/175 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  E  VV+I +  PLD    + C   T +         +PG  V V+G+GG+G  AV+
Sbjct: 144 TVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNIADVRPGDTVVVMGIGGVGINAVQ 203

Query: 61  FAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQDEMQAAM----GTM-DGIIDTV 114
            A   G +  VI+  P + K E   + GA     S + + +Q       G   D  I TV
Sbjct: 204 GAAVAGAR-KVIAVDPVEFKREQALKFGATHAFASME-EAVQLVRELTNGQGADKTIITV 261

Query: 115 SAVHPLM--PLIGLLKSQGKLVL--LGAPEK-PLELPAFPLLTGEKIVGGSLIGG 164
             V        +   +  G++V+  LG      +++  F L   +K + G+L GG
Sbjct: 262 GEVDGEHIAEALSATRKGGRVVVTGLGPMADVDVKVNLFELTLLQKELQGTLFGG 316

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 15/143 (10%)

Query: 8   VVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKA 64
           V+++P+    +  A   PL C      +  R  G+ KPG  V V+G G +G +    AKA
Sbjct: 133 VLKLPDNVSFEEAALVEPLAC----CINAQRKAGI-KPGDTVLVIGAGPIGLLHAMLAKA 187

Query: 65  MG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVSAVH 118
            G  KV V   +  +   A ++LGAD  + + ++D ++      DG     +I    +  
Sbjct: 188 SGARKVIVSDLNEFRLEFA-KKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVATGSPE 246

Query: 119 PLMPLIGLLKSQGKLVLLGAPEK 141
                + L++  G+++  G   K
Sbjct: 247 AQAQALELVRKGGRILFFGGLPK 269

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 42.9 bits (102), Expect = 5e-05
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 41  KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM 100
             G  V VVG G +G   ++ AKA G +V V+     +  E    LGAD  +   D+D  
Sbjct: 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERL-EFARELGADDTINVGDEDVA 216

Query: 101 QAAMGTMDG-----IIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELP 146
                  DG     +ID       +   + L+   G++VL+G  + P+  P
Sbjct: 217 ARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFP 267

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 41.7 bits (99), Expect = 6e-05
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV 83
          + P    G +  G  VG++GLG +G    +  KA G+KV      P  ++EA+
Sbjct: 23 WRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMKVIAYDRYPKAEAEAL 75

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 14/169 (8%)

Query: 2   VADEHFVVRI-PEGAPLDATAPLL-CAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVA 58
           ++D   + ++ P  APL A   +L   G+T Y  L   G  K G  V V    G +G V 
Sbjct: 108 ISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVV 167

Query: 59  VKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD--EM--QAAMGTMDGIIDTV 114
            + AK  G +V  I+    K     E LG D+ +  + +D  +   +A    +D   + V
Sbjct: 168 GQIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENV 227

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGA------PEKPLELPAFPLLTGEKIV 157
                L  ++ LL    ++ + GA      PE P      PLL  +++ 
Sbjct: 228 GGEV-LDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLR 275

Length = 340

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 42.4 bits (101), Expect = 8e-05
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 14/103 (13%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-----KPGMHVGV-VGLGGLG 55
           V D   VV IP+G   +  A +    +T Y     Y L      +PG  V +    GG+G
Sbjct: 63  VTDARLVVPIPDGWSFEEAATVPVVFLTAY-----YALVDLARLRPGESVLIHAAAGGVG 117

Query: 56  HVAVKFAKAMGVKVTVISTSPSKKSEAVERLG--ADSFLVSRD 96
             A++ A+ +G +V   + SP K+ + +  LG   D    SRD
Sbjct: 118 QAAIQLARHLGAEVFATAGSPEKR-DFLRALGIPDDHIFSSRD 159

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 42.0 bits (100), Expect = 9e-05
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 8   VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMG 66
           +V++P+G   +  A LL  G+T +  LR     KPG  V V    GG+G +  ++AKA+G
Sbjct: 102 LVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALG 161

Query: 67  VKVTVIST-SPSKKSEAVERLGADSFLVSRDQD 98
              TVI T S  +K+E     GAD  +  RD+D
Sbjct: 162 --ATVIGTVSSEEKAELARAAGADHVINYRDED 192

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score = 41.8 bits (99), Expect = 1e-04
 Identities = 47/186 (25%), Positives = 77/186 (41%), Gaps = 21/186 (11%)

Query: 2   VADEHFVVRIPEGAPLD--ATAP--LLCAGITVYS----PLRFYGLDKPGMHVGVVGLGG 53
           VAD     +IP+    +  AT P  L+ A + ++     PL             V+  GG
Sbjct: 104 VADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGG 163

Query: 54  ---LGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD----QDEMQAAMGT 106
              +G +A++ AK  G K  VI+T+  K  + V+ LGAD+     D    +D   A  G 
Sbjct: 164 SSSVGTLAIQLAKLAGYK--VITTASPKNFDLVKSLGADAVFDYHDPDVVEDIRAATGGK 221

Query: 107 MDGIIDTVSAVHPLMPLIGLLKS--QGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGG 164
           +   +D +S           L     GKLV L    +  E      +  + ++G ++ G 
Sbjct: 222 LRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEETEPR--KGVKVKFVLGYTVFGE 279

Query: 165 LKETQE 170
           + E +E
Sbjct: 280 IPEDRE 285

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 12/103 (11%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-----KPGMHVGVV-GLGGL 54
           +  D   VV+IP+    +  A L  A +T Y     Y L      + G  V +    GG+
Sbjct: 67  VRVDARLVVKIPDSLSFEEAATLPVAYLTAY-----YALVDLARLQKGESVLIHAAAGGV 121

Query: 55  GHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADSFLVSRD 96
           G  A++ A+ +G +V     S  K+    E  G  D    SRD
Sbjct: 122 GQAAIQLAQHLGAEVFATVGSEEKREFLRELGGPVDHIFSSRD 164

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 40/143 (27%), Positives = 54/143 (37%), Gaps = 6/143 (4%)

Query: 8   VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV 67
           +V +P+  P    AP  CA  TV + L   G D  G  V VVG G LG  A   A A G 
Sbjct: 87  IVPVPDDLPDAVAAPAGCATATVMAALEAAG-DLKGRRVLVVGAGMLGLTAAAAAAAAGA 145

Query: 68  KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM---GTMDGIIDTVSAVHPLMPLI 124
              V +     + E     GA +        E Q  +     +D  ++   A   +   +
Sbjct: 146 ARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACL 205

Query: 125 GLLKSQGKLVLLG--APEKPLEL 145
             L   G  VL G   P  P+ L
Sbjct: 206 ESLDVGGTAVLAGSVFPGGPVAL 228

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 29  TVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA 88
             + PL F G D  G  +G++G G +G    + AK  G++  ++  S ++K EA + LGA
Sbjct: 136 VAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMR--ILYYSRTRKPEAEKELGA 193

Query: 89  D 89
           +
Sbjct: 194 E 194

Length = 333

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 41  KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD 96
           K G  V V+G GG+G   V+ AKAMG  V  I   P  K E ++  GAD  L  +D
Sbjct: 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPE-KLEMMKGFGADLTLNPKD 219

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 3/89 (3%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVK 60
           VAD   +  +P+G  L+A   ++  G T    L    L  PG  V V    GGLG + V+
Sbjct: 103 VADVDSLHPVPDGLDLEAAVAVVHDGRTALGLLDLATL-TPGDVVLVTAAAGGLGSLLVQ 161

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGAD 89
            AKA G  V   +  P  K+  V  LGAD
Sbjct: 162 LAKAAGATVVGAAGGP-AKTALVRALGAD 189

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 8   VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV 67
           V +I   APLD    L C   T Y  +      +PG  V V GLG +G   ++ AKA G 
Sbjct: 152 VAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGA 211

Query: 68  -KVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAMGTM-DGIID 112
            ++  I  +P K  E  ++ GA   +  +D D+ +Q  +  M DG +D
Sbjct: 212 SRIIGIDINPDKF-ELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVD 258

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 39.1 bits (92), Expect = 9e-04
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 33  PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD 89
              F G +  G  VG+VGLG +G    K  +A G+K  V+    ++K E  E LG  
Sbjct: 130 WAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGMK--VLYYDRTRKPEPEEDLGFR 184

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 41  KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM 100
            PG  V V+G G LG +  +     G  V ++    S+K     RLG ++ L    + E 
Sbjct: 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVG-RHSEKLALARRLGVETVLPDEAESEG 212

Query: 101 QA------AMGTMDGIIDTVSAVHP 119
                   A G+  G+   +  V P
Sbjct: 213 GGFDVVVEATGSPSGLELALRLVRP 237

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 12/147 (8%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVG--VV---GLGGLGH 56
           V  E+ V + P+    +  A L  AG+T +S L   G   P    G  V+   G GG+G 
Sbjct: 118 VVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGT 177

Query: 57  VAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQA--AMGTMDGIIDTV 114
            A++  KA G  VT   T  +     V+ LGAD  +   ++D  +     G  D I+DTV
Sbjct: 178 FAIQLLKAWGAHVTT--TCSTDAIPLVKSLGADDVIDYNNEDFEEELTERGKFDVILDTV 235

Query: 115 -SAVHPLMPLIGLLKSQGKLVLLGAPE 140
                     + LLK  G  V L +P 
Sbjct: 236 GGDTEKWA--LKLLKKGGTYVTLVSPL 260

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 54/221 (24%), Positives = 90/221 (40%), Gaps = 20/221 (9%)

Query: 5   EHFVVRIPEGAPLD--ATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKF 61
              ++ IP+    +  A APL    +T +  L      +PG  V V G G G+G  A++ 
Sbjct: 129 ARNLLPIPDNLSFEEAAAAPL--TFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQI 186

Query: 62  AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM------QAAMGTMDGIIDTVS 115
           AK  G  V   + S  K   A E LGAD +++   +++             +D +++ V 
Sbjct: 187 AKLFGATVIATAGSEDKLERAKE-LGAD-YVIDYRKEDFVREVRELTGKRGVDVVVEHVG 244

Query: 116 AVHPLMPLIGLLKSQGKLVLLGA---PEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMI 172
           A       +  L   G+LV  GA    E P++L          I+ GS +G   E  E +
Sbjct: 245 AAT-WEKSLKSLARGGRLVTCGATTGYEAPIDL-RHVFWRQLSIL-GSTMGTKAELDEAL 301

Query: 173 DFAAKHNIRADIE-VIPADYVNTAMERLAKADVRYRFVIDV 212
               +  ++  I+ V P +    A  RL   +   + V+  
Sbjct: 302 RLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLTP 342

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 34  LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE 84
             F G +  G  VG++GLG +G    K  KA G+KV        ++   V+
Sbjct: 133 KAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD 183

Length = 324

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 61/219 (27%), Positives = 91/219 (41%), Gaps = 28/219 (12%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V DE  V +I   APL+    + C   T Y          PG    V GLGG+G  A+  
Sbjct: 150 VVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMG 209

Query: 62  AKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQD----EMQAAM--GTMD------ 108
            KA G  ++  +  +  K ++A E LGA   +  +D      E+   M  G +D      
Sbjct: 210 CKAAGASRIIAVDINKDKFAKAKE-LGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVI 268

Query: 109 GIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGEKIVGGSLIGGLK 166
           G +DT+ A      L    +  G  V++G P     L   P  LLTG +   G++ GG K
Sbjct: 269 GRLDTMKAA-----LASCHEGYGVSVIVGVPPSSQNLSINPMLLLTG-RTWKGAVFGGWK 322

Query: 167 ETQEM----IDFAAKH-NIRADI-EVIPADYVNTAMERL 199
               +     D+ AK  N+   I   +P + +N   + L
Sbjct: 323 SKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLL 361

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 38.4 bits (90), Expect = 0.002
 Identities = 33/91 (36%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV-GLGGLGHVAV 59
            V      V +PE  P     PLL +G+T    L   G  K G  V V    GG G  AV
Sbjct: 100 QVVPARHAVPVPELKP--EVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAV 157

Query: 60  KFAKAMGVKVTVIST-SPSKKSEAVERLGAD 89
           + AK  G    VI T S  +K+E ++ LG D
Sbjct: 158 QLAKLAG--CHVIGTCSSDEKAEFLKSLGCD 186

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 38.3 bits (90), Expect = 0.002
 Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 7/104 (6%)

Query: 50  GLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA-VERLGADSFLVSRDQD---EMQA-AM 104
           G GG+G +A++ AK +   +TVI+T+   +S A V+ LGAD  +++  QD   +++A  +
Sbjct: 158 GAGGVGSIAIQLAKQLT-GLTVIATASRPESIAWVKELGAD-HVINHHQDLAEQLEALGI 215

Query: 105 GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF 148
             +D I            +  L+  QG + L+  P++PL+L   
Sbjct: 216 EPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQEPLDLGPL 259

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 7/111 (6%)

Query: 43  GMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKSEAVERLGADSFLVSRDQ--DE 99
           G +V ++G G +G +A++ A A+G K VT I  +  +K    + LGA     SR+    +
Sbjct: 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS-EKLALAKSLGAMQTFNSREMSAPQ 219

Query: 100 MQAAMGTM--DGIIDTVSAVHPLMPL-IGLLKSQGKLVLLGAPEKPLELPA 147
           +Q+ +  +  D +I   + V   + L I +   + +L L+G     L L +
Sbjct: 220 IQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTS 270

Length = 347

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 8/139 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAV 59
           +     ++  +P+G      A L  AG+T    LR  G    G  V V G  GG+G  AV
Sbjct: 92  VAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGG-PLLGRRVLVTGASGGVGRFAV 150

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           + A   G  V  +  SP  ++E +  LGA   +V       + +   +D ++D+V     
Sbjct: 151 QLAALAGAHVVAVVGSP-ARAEGLRELGAAEVVVGGS----ELSGAPVDLVVDSVGG-PQ 204

Query: 120 LMPLIGLLKSQGKLVLLGA 138
           L   + LL   G +V +G+
Sbjct: 205 LARALELLAPGGTVVSVGS 223

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 24/192 (12%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-KPGMHVGVVGLGGLGHVAVK 60
           V D   VV+I   APL   + L C G++      +   + + G  V + GLG +G    +
Sbjct: 158 VLDSACVVKIDPNAPLKKMSLLSC-GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAE 216

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDE------MQAAMGTMD----- 108
            A+A G  K+  +  +P K  +  E +G   F+  +D D+       +   G +D     
Sbjct: 217 GARARGASKIIGVDINPEKFEKGKE-MGITDFINPKDSDKPVHERIREMTGGGVDYSFEC 275

Query: 109 -GIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP--LLTGEKIVGGSLIGGL 165
            G ++ +         +      G  VLLG    P  LP  P  L  G  I  GS+ G  
Sbjct: 276 AGNVEVLREA-----FLSTHDGWGLTVLLGIHPTPKMLPLHPMELFDGRSIT-GSVFGDF 329

Query: 166 KETQEMIDFAAK 177
           K   ++ + A +
Sbjct: 330 KGKSQLPNLAKQ 341

Length = 381

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 32  SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER-LGAD 89
           +PL F G +  G  +G++G+G +G    + AKA G+K  ++  +  + SE  E+ LGA 
Sbjct: 133 APLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMK--ILYYNRHRLSEETEKELGAT 189

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 18/212 (8%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           V  E  + +I   APL+    L C   T    +      + G  V V GLGG+G   ++ 
Sbjct: 145 VVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQG 204

Query: 62  AKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDE------MQAAMGTMDGIIDTV 114
           A+     ++  I  +P+ K E  ++LGA   +   D D+      ++   G +D   + +
Sbjct: 205 ARMAKASRIIAIDINPA-KFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI 263

Query: 115 SAVHPL-MPLIGLLKSQGKLVLLGAPEKPLELPA--FPLLTGEKIVGGSLIGGLK---ET 168
             V+ +   L    K  G+ +++G      E+    F L+TG ++  GS  GG+K   E 
Sbjct: 264 GNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVTG-RVWRGSAFGGVKGRTEL 322

Query: 169 QEMIDFAAKHNIRAD---IEVIPADYVNTAME 197
             +++   K  I  D      +P + +N A +
Sbjct: 323 PGIVEQYMKGEIALDDFVTHTMPLEDINEAFD 354

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.98
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.98
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.97
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.97
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.97
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.97
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.97
PLN02827	378	Alcohol dehydrogenase-like	99.97
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.97
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.97
PLN02740	381	Alcohol dehydrogenase-like	99.97
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.97
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	99.96
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.96
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.96
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.96
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.96
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.96
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.96
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.96
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.96
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.96
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.96
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.96
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.96
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.95
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.95
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.95
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.95
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.95
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.95
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.95
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.95
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.94
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.94
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.94
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.94
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.94
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.94
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.94
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.94
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.94
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.94
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.94
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.93
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.93
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.93
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.93
PRK10083	339	putative oxidoreductase; Provisional	99.93
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.93
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.93
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.93
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.93
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.93
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.93
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.92
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.92
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.92
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.92
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.92
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.92
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.92
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.92
PTZ00354	334	alcohol dehydrogenase; Provisional	99.92
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.92
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.92
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.92
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.92
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.92
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.92
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.92
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.92
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.92
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.92
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.92
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.92
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.91
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.91
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.91
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.91
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.91
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.91
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.91
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.91
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.9
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.9
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.9
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.9
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.9
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.9
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.9
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.9
PLN02702	364	L-idonate 5-dehydrogenase	99.9
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.89
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.89
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.89
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.89
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.89
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.89
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.89
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.89
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.88
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.87
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.87
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.87
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.87
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.87
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.87
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.87
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.86
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.86
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.86
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.86
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.86
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.85
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.85
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.83
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.83
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.71
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.64
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.63
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	99.09
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.03
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.02
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.0
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.98
PLN02494	477	adenosylhomocysteinase	98.96
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.86
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.82
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	98.72
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.65
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.6
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	98.6
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.48
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.47
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.33
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.3
PRK08324	681	short chain dehydrogenase; Validated	98.24
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.23
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.23
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.2
PRK12742	237	oxidoreductase; Provisional	98.2
COG0300	265	DltE Short-chain dehydrogenases of various substra	98.19
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	98.19
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.19
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.16
PLN03209	576	translocon at the inner envelope of chloroplast su	98.14
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.14
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.13
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.13
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	98.11
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	98.1
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	98.09
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.08
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.08
PRK06182	273	short chain dehydrogenase; Validated	98.07
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.04
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	98.04
PRK05993	277	short chain dehydrogenase; Provisional	98.03
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.03
PRK08265	261	short chain dehydrogenase; Provisional	98.03
PRK06139	330	short chain dehydrogenase; Provisional	98.01
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	98.01
PRK05693	274	short chain dehydrogenase; Provisional	97.99
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.96
PRK06500	249	short chain dehydrogenase; Provisional	97.95
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.94
PRK08339	263	short chain dehydrogenase; Provisional	97.93
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.93
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.93
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK07825	273	short chain dehydrogenase; Provisional	97.92
PRK07576	264	short chain dehydrogenase; Provisional	97.91
PRK06484	520	short chain dehydrogenase; Validated	97.9
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.9
PRK07109	334	short chain dehydrogenase; Provisional	97.89
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.89
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.89
PRK07060	245	short chain dehydrogenase; Provisional	97.86
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.85
PRK07814	263	short chain dehydrogenase; Provisional	97.85
PRK12939	250	short chain dehydrogenase; Provisional	97.85
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.84
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.84
PRK07326	237	short chain dehydrogenase; Provisional	97.84
PRK06196	315	oxidoreductase; Provisional	97.83
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.83
PRK06484	520	short chain dehydrogenase; Validated	97.83
PRK05872	296	short chain dehydrogenase; Provisional	97.83
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.81
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	97.79
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.79
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.79
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	97.79
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.78
PRK06180	277	short chain dehydrogenase; Provisional	97.78
PRK08618	325	ornithine cyclodeaminase; Validated	97.77
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.77
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	97.77
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.76
PRK09242	257	tropinone reductase; Provisional	97.76
PRK06057	255	short chain dehydrogenase; Provisional	97.76
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.76
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.76
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	97.75
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.75
PRK07806	248	short chain dehydrogenase; Provisional	97.74
PRK12829	264	short chain dehydrogenase; Provisional	97.72
PRK12367	245	short chain dehydrogenase; Provisional	97.72
PRK07832	272	short chain dehydrogenase; Provisional	97.71
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.7
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.7
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.7
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	97.69
PRK05866	293	short chain dehydrogenase; Provisional	97.68
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	97.68
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	97.68
PRK08267	260	short chain dehydrogenase; Provisional	97.68
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	97.67
PRK10538	248	malonic semialdehyde reductase; Provisional	97.67
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	97.67
PRK07340	304	ornithine cyclodeaminase; Validated	97.67
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.66
PRK09072	263	short chain dehydrogenase; Provisional	97.63
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	97.63
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.62
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.62
PLN00203	519	glutamyl-tRNA reductase	97.61
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.61
PRK08263	275	short chain dehydrogenase; Provisional	97.6
PRK04457	262	spermidine synthase; Provisional	97.6
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.6
PRK06101	240	short chain dehydrogenase; Provisional	97.6
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	97.59
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.58
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	97.58
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.58
PRK06128	300	oxidoreductase; Provisional	97.58
PRK07574	385	formate dehydrogenase; Provisional	97.58
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.58
PRK07062	265	short chain dehydrogenase; Provisional	97.57
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.57
PRK07063	260	short chain dehydrogenase; Provisional	97.57
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.57
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.56
PRK04148	134	hypothetical protein; Provisional	97.56
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	97.55
PRK13243	333	glyoxylate reductase; Reviewed	97.55
PRK05867	253	short chain dehydrogenase; Provisional	97.55
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.54
PLN03139	386	formate dehydrogenase; Provisional	97.54
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.54
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.54
PRK06141	314	ornithine cyclodeaminase; Validated	97.53
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.52
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	97.51
PRK06940	275	short chain dehydrogenase; Provisional	97.51
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.51
PRK06398	258	aldose dehydrogenase; Validated	97.5
PRK07831	262	short chain dehydrogenase; Provisional	97.5
PRK05717	255	oxidoreductase; Validated	97.49
PRK07890	258	short chain dehydrogenase; Provisional	97.49
PRK05854	313	short chain dehydrogenase; Provisional	97.48
PRK06194	287	hypothetical protein; Provisional	97.48
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.48
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	97.47
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.47
CHL00194	317	ycf39 Ycf39; Provisional	97.47
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.47
PRK06949	258	short chain dehydrogenase; Provisional	97.47
PRK09291	257	short chain dehydrogenase; Provisional	97.46
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.46
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.45
PRK05884	223	short chain dehydrogenase; Provisional	97.45
PRK09186	256	flagellin modification protein A; Provisional	97.44
PRK12747	252	short chain dehydrogenase; Provisional	97.44
PRK05876	275	short chain dehydrogenase; Provisional	97.44
PLN02253	280	xanthoxin dehydrogenase	97.44
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.43
PRK12937	245	short chain dehydrogenase; Provisional	97.43
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.43
PRK06914	280	short chain dehydrogenase; Provisional	97.43
PRK07478	254	short chain dehydrogenase; Provisional	97.42
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	97.42
PRK12828	239	short chain dehydrogenase; Provisional	97.42
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.41
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.4
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.4
PRK06125	259	short chain dehydrogenase; Provisional	97.4
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	97.4
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	97.39
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	97.39
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.38
PRK07677	252	short chain dehydrogenase; Provisional	97.38
PRK07024	257	short chain dehydrogenase; Provisional	97.37
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.37
PRK07774	250	short chain dehydrogenase; Provisional	97.36
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.35
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.35
PRK06483	236	dihydromonapterin reductase; Provisional	97.35
PRK08589	272	short chain dehydrogenase; Validated	97.35
PRK08643	256	acetoin reductase; Validated	97.35
PRK07985	294	oxidoreductase; Provisional	97.35
PRK08177	225	short chain dehydrogenase; Provisional	97.34
PRK08862	227	short chain dehydrogenase; Provisional	97.34
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	97.34
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.33
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.32
PLN02928	347	oxidoreductase family protein	97.32
PRK06138	252	short chain dehydrogenase; Provisional	97.32
PRK13255	218	thiopurine S-methyltransferase; Reviewed	97.32
PRK06701	290	short chain dehydrogenase; Provisional	97.32
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.32
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.31
PRK07067	257	sorbitol dehydrogenase; Provisional	97.31
PLN03075	296	nicotianamine synthase; Provisional	97.31
COG2910	211	Putative NADH-flavin reductase [General function p	97.3
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.29
PRK10258	251	biotin biosynthesis protein BioC; Provisional	97.29
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.29
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.29
PRK06181	263	short chain dehydrogenase; Provisional	97.28
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	97.28
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.28
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.28
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.27
PRK08017	256	oxidoreductase; Provisional	97.27
PRK06197	306	short chain dehydrogenase; Provisional	97.27
PRK07069	251	short chain dehydrogenase; Validated	97.26
PRK12746	254	short chain dehydrogenase; Provisional	97.26
PRK05875	276	short chain dehydrogenase; Provisional	97.26
PRK06841	255	short chain dehydrogenase; Provisional	97.26
PRK14982	340	acyl-ACP reductase; Provisional	97.26
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.26
PRK07402	196	precorrin-6B methylase; Provisional	97.25
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.25
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.24
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.24
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.23
TIGR00438	188	rrmJ cell division protein FtsJ.	97.22
PRK10669	558	putative cation:proton antiport protein; Provision	97.22
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.22
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	97.22
PRK05855	582	short chain dehydrogenase; Validated	97.22
PRK06720	169	hypothetical protein; Provisional	97.22
PRK07035	252	short chain dehydrogenase; Provisional	97.21
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.21
PRK07904	253	short chain dehydrogenase; Provisional	97.21
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	97.21
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.2
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.2
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.19
PRK06482	276	short chain dehydrogenase; Provisional	97.19
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.19
PRK12938	246	acetyacetyl-CoA reductase; Provisional	97.18
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.18
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.18
PRK07074	257	short chain dehydrogenase; Provisional	97.18
PRK12743	256	oxidoreductase; Provisional	97.18
PRK07097	265	gluconate 5-dehydrogenase; Provisional	97.18
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	97.18
PRK06932	314	glycerate dehydrogenase; Provisional	97.18
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.18
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.18
PRK08291	330	ectoine utilization protein EutC; Validated	97.17
PRK07454	241	short chain dehydrogenase; Provisional	97.17
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.17
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.16
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.16
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.15
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.15
PRK06172	253	short chain dehydrogenase; Provisional	97.14
PRK06124	256	gluconate 5-dehydrogenase; Provisional	97.14
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	97.14
PRK08277	278	D-mannonate oxidoreductase; Provisional	97.14
PRK06198	260	short chain dehydrogenase; Provisional	97.14
PRK08251	248	short chain dehydrogenase; Provisional	97.14
PRK12480	330	D-lactate dehydrogenase; Provisional	97.13
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.13
PRK10637	457	cysG siroheme synthase; Provisional	97.13
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.13
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.12
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.12
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	97.12
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.12
PLN02780	320	ketoreductase/ oxidoreductase	97.11
PLN02896	353	cinnamyl-alcohol dehydrogenase	97.11
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.1
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.1
PRK14967	223	putative methyltransferase; Provisional	97.08
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	97.08
PRK08703	239	short chain dehydrogenase; Provisional	97.07
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.07
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	97.06
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.05
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.05
PRK08936	261	glucose-1-dehydrogenase; Provisional	97.05
PRK08317	241	hypothetical protein; Provisional	97.04
PRK06179	270	short chain dehydrogenase; Provisional	97.04
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.03
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.03
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	97.03
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.03
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.03
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.02
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	97.02
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.02
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.01
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	97.01
PRK05650	270	short chain dehydrogenase; Provisional	97.01
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	97.01
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.01
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	97.0
PRK08264	238	short chain dehydrogenase; Validated	96.99
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	96.99
PRK07775	274	short chain dehydrogenase; Provisional	96.99
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	96.99
PRK07791	286	short chain dehydrogenase; Provisional	96.99
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.98
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.98
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	96.98
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.98
PRK09496	453	trkA potassium transporter peripheral membrane com	96.98
PRK08328	231	hypothetical protein; Provisional	96.97
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.97
PRK08278	273	short chain dehydrogenase; Provisional	96.97
PRK07578	199	short chain dehydrogenase; Provisional	96.97
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	96.97
PRK06436	303	glycerate dehydrogenase; Provisional	96.97
PRK08628	258	short chain dehydrogenase; Provisional	96.96
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	96.95
PRK04266	226	fibrillarin; Provisional	96.95
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	96.95
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.95
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.94
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	96.94
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	96.93
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.93
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.93
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.92
PRK08605	332	D-lactate dehydrogenase; Validated	96.92
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.92
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.91
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.91
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.91
PRK00811	283	spermidine synthase; Provisional	96.91
PRK09135	249	pteridine reductase; Provisional	96.91
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.91
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.91
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	96.9
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.89
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.89
PTZ00146	293	fibrillarin; Provisional	96.89
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.89
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	96.89
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.89
KOG0725	270	consensus Reductases with broad range of substrate	96.88
PRK07102	243	short chain dehydrogenase; Provisional	96.88
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	96.88
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.87
PRK12744	257	short chain dehydrogenase; Provisional	96.87
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.87
PLN02233	261	ubiquinone biosynthesis methyltransferase	96.87
PRK11207	197	tellurite resistance protein TehB; Provisional	96.87
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.87
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.87
PRK06114	254	short chain dehydrogenase; Provisional	96.86
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.86
PRK06953	222	short chain dehydrogenase; Provisional	96.86
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.86
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	96.86
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	96.86
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.86
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.85
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.85
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.85
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.84
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	96.84
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.84
PRK08303	305	short chain dehydrogenase; Provisional	96.84
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.83
PRK08655	437	prephenate dehydrogenase; Provisional	96.83
PRK07856	252	short chain dehydrogenase; Provisional	96.83
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.83
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.82
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	96.82
PLN02244	340	tocopherol O-methyltransferase	96.82
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.82
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.81
PRK06823	315	ornithine cyclodeaminase; Validated	96.81

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=9.6e-39  Score=245.56  Aligned_cols=210  Identities=47%  Similarity=0.715  Sum_probs=193.9

Q ss_pred             CcccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         1 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      +++|+++++++|+++++..||++.|++.|+|++|+... ++||++|+|+|.|++|.+++|+|+++|++|+++++++++++
T Consensus       126 v~v~~~~~~~iP~~~d~~~aApllCaGiT~y~alk~~~-~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e  204 (339)
T COG1064         126 VVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKAN-VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLE  204 (339)
T ss_pred             EEEchHHeEECCCCCChhhhhhhhcCeeeEeeehhhcC-CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHH
Confidence            46899999999999999999999999999999998855 89999999999999999999999999999999999999887


Q ss_pred             HHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC-CC-cccCccccccCCcEEE
Q 027668           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KP-LELPAFPLLTGEKIVG  158 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~-~~-~~~~~~~~~~~~~~i~  158 (220)
                      .+ +++|++++++..+++..+...+.+|+++|+++ ..++..+++.|+++|+++++|.+. .. .+++.+.++++++++.
T Consensus       205 ~a-~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~  282 (339)
T COG1064         205 LA-KKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIV  282 (339)
T ss_pred             HH-HHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEE
Confidence            66 79999999997776666666556999999999 778999999999999999999985 44 5678888999999999


Q ss_pred             EeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          159 GSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      |+..+++.++++++++.+++.++|.+ +.++++++++||+.|.+++..+|+|+++.
T Consensus       283 GS~~g~~~d~~e~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~  338 (339)
T COG1064         283 GSLVGTRADLEEALDFAAEGKIKPEILETIPLDEINEAYERMEKGKVRGRAVIDMS  338 (339)
T ss_pred             EEecCCHHHHHHHHHHHHhCCceeeEEeeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence            99999999999999999999999999 79999999999999999999999999874

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=6.8e-36  Score=223.55  Aligned_cols=215  Identities=59%  Similarity=0.929  Sum_probs=197.5

Q ss_pred             CcccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         1 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      +++++.++++||++++++.||++.|++.|+|..|.+.+ +.||+++.|.|+|++|.+++|++|++|.+|+++++++.+++
T Consensus       141 ~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g-~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kke  219 (360)
T KOG0023|consen  141 AVVDEVFAIKIPENLPLASAAPLLCAGITVYSPLKRSG-LGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKE  219 (360)
T ss_pred             EEEeeeeEEECCCCCChhhccchhhcceEEeehhHHcC-CCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHH
Confidence            46788999999999999999999999999999998776 78999999999977999999999999999999999998889


Q ss_pred             HHHHHcCCcEEecCC-CHHHHHHhcCCccEEEEcCC--CcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEE
Q 027668           81 EAVERLGADSFLVSR-DQDEMQAAMGTMDGIIDTVS--AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIV  157 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~-~~~~~~~~~~~~d~vid~~g--~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i  157 (220)
                      ++.+.+|++..++.. ++++++++.+-.|..++++.  ....+..++..+|++|++|++|.+.....++.+++..+.+++
T Consensus       220 ea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I  299 (360)
T KOG0023|consen  220 EAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSI  299 (360)
T ss_pred             HHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEE
Confidence            999999998877776 78888887766666666665  555689999999999999999999888999999999999999


Q ss_pred             EEeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeCCcc
Q 027668          158 GGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~~  216 (220)
                      .||..+++.+.++++++.+++.++++++..+++++++||++|++++.++|.|+++..+.
T Consensus       300 ~GS~vG~~ket~E~Ldf~a~~~ik~~IE~v~~~~v~~a~erm~kgdV~yRfVvD~s~~~  358 (360)
T KOG0023|consen  300 KGSIVGSRKETQEALDFVARGLIKSPIELVKLSEVNEAYERMEKGDVRYRFVVDVSKSL  358 (360)
T ss_pred             EeeccccHHHHHHHHHHHHcCCCcCceEEEehhHHHHHHHHHHhcCeeEEEEEEccccc
Confidence            99999999999999999999999999999999999999999999999999999987663

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.7e-34  Score=216.51  Aligned_cols=209  Identities=22%  Similarity=0.266  Sum_probs=183.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      +.++++++|+|+++|++++|.+.. ++.++||+++.. +++|++|||+|+||+|+.+...||++|+ +|++++-.+.|++
T Consensus       131 ~~~~dfc~KLPd~vs~eeGAl~eP-LsV~~HAcr~~~-vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle  208 (354)
T KOG0024|consen  131 VHPADFCYKLPDNVSFEEGALIEP-LSVGVHACRRAG-VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLE  208 (354)
T ss_pred             EechHheeeCCCCCchhhcccccc-hhhhhhhhhhcC-cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHH
Confidence            578999999999999999997775 788999997665 8999999999999999999999999999 9999999998887


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHh----cC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccc
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAA----MG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~----~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~  151 (220)
                      .+ ++||++.+.+....   +.+.+.    .+  .+|++|||+|...+++.++..++.+|++++.|......+|+...+.
T Consensus       209 ~A-k~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~  287 (354)
T KOG0024|consen  209 LA-KKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVA  287 (354)
T ss_pred             HH-HHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhh
Confidence            77 67999988766552   222222    22  4999999999998999999999999999999998888999999999


Q ss_pred             cCCcEEEEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCc-ceEEEEEeC
Q 027668          152 TGEKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADV-RYRFVIDVA  213 (220)
Q Consensus       152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~-~~k~v~~~~  213 (220)
                      .+++.+.|++.+...+|+.+++++++|+++..  + +.|++++..|||+.+.++.. .-|+++...
T Consensus       288 ~kE~~~~g~fry~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~  353 (354)
T KOG0024|consen  288 LKEVDLRGSFRYCNGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGP  353 (354)
T ss_pred             hheeeeeeeeeeccccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCC
Confidence            99999999999998899999999999998864  5 89999999999999987774 468888764

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=9e-34  Score=226.64  Aligned_cols=214  Identities=72%  Similarity=1.143  Sum_probs=188.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++++++++++++.+.|+|+++.....+++|++|+|.|+|++|++++|+++.+|++|++++.+++++.+
T Consensus       143 ~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~  222 (360)
T PLN02586        143 VVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDE  222 (360)
T ss_pred             EEchHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhh
Confidence            57788999999999999999999999999999877666689999999999999999999999999999988888777777


Q ss_pred             HHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEee
Q 027668           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSL  161 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~  161 (220)
                      +++++|++.++++.+.+.+.+..+++|++||++|....+..++++++++|+++.+|......+++...++.++..+.++.
T Consensus       223 ~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~  302 (360)
T PLN02586        223 AINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSD  302 (360)
T ss_pred             HHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcC
Confidence            77889999998877655666666689999999998667888999999999999999765555677777777888898988


Q ss_pred             ccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeCCc
Q 027668          162 IGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      .++..+++++++++++|.+++.+++|+++++++||+.+.+++..+|+++.+.++
T Consensus       303 ~~~~~~~~~~~~li~~g~i~~~~~~~~l~~~~~A~~~~~~~~~~gkvvi~~~~~  356 (360)
T PLN02586        303 IGGIKETQEMLDFCAKHNITADIELIRMDEINTAMERLAKSDVRYRFVIDVANS  356 (360)
T ss_pred             cCCHHHHHHHHHHHHhCCCCCcEEEEeHHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence            878888999999999999998778999999999999999998889999998443

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=3.2e-33  Score=224.25  Aligned_cols=214  Identities=64%  Similarity=1.061  Sum_probs=186.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccC-CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL-DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~-~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++++++.+.+.|+|+++..... .++|++|+|.|+|++|++++|+|+.+|++|++++.+++++.
T Consensus       137 ~v~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~  216 (375)
T PLN02178        137 VVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKER  216 (375)
T ss_pred             EEchHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhH
Confidence            57888999999999999999999999999999876543 36899999999999999999999999999999888776655


Q ss_pred             HHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEe
Q 027668           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGS  160 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~  160 (220)
                      ++++++|++.++++.+.+.+.+..+++|++|||+|....+..++++++++|+++.+|......+++...++.+++++.|+
T Consensus       217 ~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~  296 (375)
T PLN02178        217 EAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGS  296 (375)
T ss_pred             HHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEe
Confidence            66689999999887665555555568999999999876688999999999999999986555567777778899999999


Q ss_pred             eccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeCCc
Q 027668          161 LIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      ..++..++.++++++++|++++.+++|+|+++++||+.+.+++..+|+++.+.++
T Consensus       297 ~~~~~~~~~~~~~l~~~g~i~~~i~~~~l~~~~~A~~~~~~~~~~gkvvi~~~~~  351 (375)
T PLN02178        297 QIGGMKETQEMLEFCAKHKIVSDIELIKMSDINSAMDRLAKSDVRYRFVIDVANS  351 (375)
T ss_pred             CccCHHHHHHHHHHHHhCCCcccEEEEeHHHHHHHHHHHHcCCCceEEEEEeccc
Confidence            8888889999999999999998888899999999999999998889999998544

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=1.6e-32  Score=219.36  Aligned_cols=214  Identities=55%  Similarity=0.916  Sum_probs=188.8

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      ++|.+.++++|+++++++++++++.+.|||+++......++|++++|+|+|++|++++|+++.+|+++++++.++++++.
T Consensus       140 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~  219 (357)
T PLN02514        140 VVDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREE  219 (357)
T ss_pred             EEchHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            56788999999999999999999999999999987776689999999999999999999999999999999888888777


Q ss_pred             HHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEee
Q 027668           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSL  161 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~  161 (220)
                      +.+++|++.+++..+.+.+.+..+++|++|||+|....+..++++++++|+++.+|......+++...++.++.++.|+.
T Consensus       220 ~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~  299 (357)
T PLN02514        220 ALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSF  299 (357)
T ss_pred             HHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEe
Confidence            77789998877766655565555689999999997667889999999999999999876555677777788999999999


Q ss_pred             ccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeCCc
Q 027668          162 IGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      ..+..+++++++++++|.+.+.+++|+++++++||+.+.+++..+|+++.++.+
T Consensus       300 ~~~~~~~~~~~~~~~~g~l~~~i~~~~l~~~~~A~~~~~~~~~~gk~v~~~~~~  353 (357)
T PLN02514        300 IGSMKETEEMLEFCKEKGLTSMIEVVKMDYVNTAFERLEKNDVRYRFVVDVAGS  353 (357)
T ss_pred             cCCHHHHHHHHHHHHhCCCcCcEEEEcHHHHHHHHHHHHcCCCceeEEEEcccc
Confidence            888889999999999999887678899999999999999998889999998654

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=5.8e-32  Score=212.14  Aligned_cols=209  Identities=29%  Similarity=0.449  Sum_probs=178.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++|+++||++++.+.|||+++....++++|++|||+|+ |++|++++|+||++|+.++++..++++.+
T Consensus       102 ~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~  181 (326)
T COG0604         102 VVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE  181 (326)
T ss_pred             EecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH
Confidence            67899999999999999999999999999999999888999999999986 99999999999999987777777777777


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccccccC
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~~~~~  153 (220)
                       .++++|+++++++.+.   +.++++++  ++|+|||++|.. .+..++++++++|+++.+|...+  ...++...++.+
T Consensus       182 -~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~-~~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~  259 (326)
T COG0604         182 -LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGD-TFAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGK  259 (326)
T ss_pred             -HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCHH-HHHHHHHHhccCCEEEEEecCCCCCccccCHHHHhhc
Confidence             6689999999998774   45566665  699999999998 68889999999999999999773  345566667778


Q ss_pred             CcEEEEeeccCH------HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHc-CCcceEEEEEe
Q 027668          154 EKIVGGSLIGGL------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAK-ADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~-~~~~~k~v~~~  212 (220)
                      ..+..+......      +.+.++.+++++|.+++.+ .+|++++..++...... ++..||+|+++
T Consensus       260 ~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~  326 (326)
T COG0604         260 RLTLRGVTLGSRDPEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV  326 (326)
T ss_pred             cEEEEEecceecchHHHHHHHHHHHHHHHcCCCcceeccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence            888888776644      5577799999999999999 79999996555554444 47789999874

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.98  E-value=6.8e-31  Score=209.06  Aligned_cols=207  Identities=21%  Similarity=0.260  Sum_probs=172.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      +++++.++++|+++++++++ +...+.++|+++.+.. ..+|++|+|+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       131 ~v~~~~~~~~P~~l~~~~aa-~~~~~~~a~~al~~~~-~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~  208 (343)
T PRK09880        131 VVDTAQCIPYPEKADEKVMA-FAEPLAVAIHAAHQAG-DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLS  208 (343)
T ss_pred             EechHHeEECCCCCCHHHHH-hhcHHHHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHH
Confidence            57888999999999987665 4556778999998765 5689999999999999999999999999 6888888888776


Q ss_pred             HHHHHcCCcEEecCCCHHHHH--HhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEE
Q 027668           81 EAVERLGADSFLVSRDQDEMQ--AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVG  158 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~--~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~  158 (220)
                      .+ +++|++.++++.+.+..+  ...+++|++|||+|.+..+..++++++++|+++.+|......+++...++.+++++.
T Consensus       209 ~a-~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~  287 (343)
T PRK09880        209 LA-REMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLK  287 (343)
T ss_pred             HH-HHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEE
Confidence            65 789999998876643211  112369999999998767889999999999999999866556677777788999999


Q ss_pred             EeeccCHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          159 GSLIGGLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ++... .+++++++++++++.+++  .+ ++|+++++++|++.+.+++..+|+++.+
T Consensus       288 g~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        288 GSFRF-TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             EEeec-cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence            98754 467999999999999986  34 8999999999999999887779999864

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.98  E-value=9e-31  Score=210.40  Aligned_cols=208  Identities=26%  Similarity=0.417  Sum_probs=177.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++|+++.+.+.|||+++.....+++|++|+|.|+|++|++++|+++.+|+ +|++++.++++++
T Consensus       151 ~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~  230 (371)
T cd08281         151 VVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLA  230 (371)
T ss_pred             EecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence            568889999999999999999999999999998666678999999999999999999999999999 6988888888776


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~~~~~~  154 (220)
                      .+ +++|++.++++.+.+   .+.+.++ ++|++|||+|....+..++++++++|+++.+|....  ..+++...++.++
T Consensus       231 ~a-~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~  309 (371)
T cd08281         231 LA-RELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEE  309 (371)
T ss_pred             HH-HHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcC
Confidence            66 789999998877643   3444444 799999999987678899999999999999997643  3456666788899


Q ss_pred             cEEEEeeccC---HHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          155 KIVGGSLIGG---LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       155 ~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      +++.|+...+   .+++.++++++++|.+++.  + ++|+++++++||+.+.+++..+|+|+
T Consensus       310 ~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi~  371 (371)
T cd08281         310 RTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVIL  371 (371)
T ss_pred             CEEEEEecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence            9999987653   5678999999999999863  4 89999999999999999988777653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.97  E-value=1.6e-30  Score=206.67  Aligned_cols=207  Identities=25%  Similarity=0.334  Sum_probs=175.8

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      ++|.+.++++|+++++++++++++.+.|||+++.... +++|++|+|+|+|++|++++|+++.+|++ |+++++++++++
T Consensus       124 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~  202 (339)
T cd08239         124 LVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVG-VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLE  202 (339)
T ss_pred             EechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhcC-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            5678899999999999999999999999999997655 78999999999999999999999999997 999888888776


Q ss_pred             HHHHHcCCcEEecCCCHH--HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCc-cccccCCc
Q 027668           81 EAVERLGADSFLVSRDQD--EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA-FPLLTGEK  155 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~--~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~-~~~~~~~~  155 (220)
                      .+ +++|++.++++.+.+  .+.+.++  ++|++|||+|....+..++++++++|+++.+|.... .+++. ..++.+++
T Consensus       203 ~~-~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~  280 (339)
T cd08239         203 LA-KALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGE-LTIEVSNDLIRKQR  280 (339)
T ss_pred             HH-HHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCC-cccCcHHHHHhCCC
Confidence            66 789999888876543  3334443  799999999988666789999999999999997553 23333 34677999


Q ss_pred             EEEEeeccCHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          156 IVGGSLIGGLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ++.|+...+.+++++++++++++.+++  .+ ++|+++++++||+.+.++. .+|+|+++
T Consensus       281 ~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~-~gKvvi~~  339 (339)
T cd08239         281 TLIGSWYFSVPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGE-SGKVVFVF  339 (339)
T ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCC-ceEEEEeC
Confidence            999998888889999999999999875  34 8999999999999998775 68999874

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.97  E-value=3.2e-30  Score=205.32  Aligned_cols=206  Identities=19%  Similarity=0.176  Sum_probs=170.8

Q ss_pred             eeCCCCCCcc-cccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc
Q 027668            9 VRIPEGAPLD-ATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL   86 (220)
Q Consensus         9 ~~~p~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~   86 (220)
                      +++|++++++ +++++++.+.|||+++.....+++|++|||+|+ |++|++++|+|+.+|++|++++.++++++.+.+++
T Consensus       124 ~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~l  203 (348)
T PLN03154        124 IQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKL  203 (348)
T ss_pred             ccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhc
Confidence            3459999986 688999999999999977777899999999997 99999999999999999999988888877664479


Q ss_pred             CCcEEecCCCH----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cc-----cCccccccCCc
Q 027668           87 GADSFLVSRDQ----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LE-----LPAFPLLTGEK  155 (220)
Q Consensus        87 g~~~v~~~~~~----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~-----~~~~~~~~~~~  155 (220)
                      |++.++++.+.    +.+++.++ ++|++|||+|.. .+..++++++++|+++.+|..... .+     ++...++.+++
T Consensus       204 Ga~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~vG~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~  282 (348)
T PLN03154        204 GFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVGGD-MLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRI  282 (348)
T ss_pred             CCCEEEECCCcccHHHHHHHHCCCCcEEEEECCCHH-HHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccc
Confidence            99999987642    33444444 899999999986 688999999999999999976432 11     23445677899


Q ss_pred             EEEEeeccC-----HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCCc
Q 027668          156 IVGGSLIGG-----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       156 ~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      ++.|+..+.     .+.++++++++++|.+++.+ .+|+|+++++|++.+.+++..||+|+++.++
T Consensus       283 ~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~~~~~~~~L~~~~~A~~~l~~g~~~GKvVl~~~~~  348 (348)
T PLN03154        283 RMQGFLQSDYLHLFPQFLENVSRYYKQGKIVYIEDMSEGLESAPAALVGLFSGKNVGKQVIRVAKE  348 (348)
T ss_pred             eEEEEEHHHHHHHHHHHHHHHHHHHHCCCccCceecccCHHHHHHHHHHHHcCCCCceEEEEecCC
Confidence            999886542     34578899999999999887 6899999999999999999999999998543

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.97  E-value=5.6e-30  Score=202.51  Aligned_cols=202  Identities=26%  Similarity=0.319  Sum_probs=174.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++++++++++++.+.|||+++.. ..+++|++|||+|+|++|++++|+++.+|++|+++++++++++.
T Consensus       126 ~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~  204 (329)
T TIGR02822       126 TVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLR-ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRL  204 (329)
T ss_pred             EeccccEEECCCCCCHHHhHHHhccchHHHHHHHh-cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence            57888999999999999999999999999999975 45899999999999999999999999999999999998887655


Q ss_pred             HHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCCcEEEEe
Q 027668           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGEKIVGGS  160 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~~~i~~~  160 (220)
                      + +++|++.+++..+..     .+++|.++++.+....+..++++++++|+++.+|...+ ...++...++.+++++.++
T Consensus       205 a-~~~Ga~~vi~~~~~~-----~~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~  278 (329)
T TIGR02822       205 A-LALGAASAGGAYDTP-----PEPLDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSV  278 (329)
T ss_pred             H-HHhCCceeccccccC-----cccceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEe
Confidence            5 899999988754321     13789999988877788999999999999999998533 2345666667889999998


Q ss_pred             eccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEE
Q 027668          161 LIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      ....+.++.+++++++++.+++..++|+++++++|++.+.+++..||+|+
T Consensus       279 ~~~~~~~~~~~~~l~~~g~i~~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       279 TSNTRADAREFLELAAQHGVRVTTHTYPLSEADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             ecCCHHHHHHHHHHHHhCCCeeEEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence            88788889999999999999854489999999999999999998899987

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=2.6e-30  Score=187.69  Aligned_cols=214  Identities=21%  Similarity=0.283  Sum_probs=178.8

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .+|...++++|+.++++.||++...+.|||..++....++||++||++.+ |++|+++.|+++..|+.+|.+..+.++++
T Consensus       106 ~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~  185 (336)
T KOG1197|consen  106 TVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHE  185 (336)
T ss_pred             cccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHH
Confidence            47889999999999999999999999999999999999999999999975 99999999999999999999999999887


Q ss_pred             HHHHHcCCcEEecCCCHHHHH---HhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCc-ccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQDEMQ---AAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~---~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~-~~~~~~~~~~~  154 (220)
                      .+ ++.|+++.++++..|.++   ++++  |+|+++|++|.. ++...+.+|++.|.+|.+|..++.. +++...+-.+.
T Consensus       186 ~a-kenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~d-t~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~  263 (336)
T KOG1197|consen  186 IA-KENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSVGKD-TFAKSLAALKPMGKMVSFGNASGLIDPIPLNQLSPKA  263 (336)
T ss_pred             HH-HhcCCcceeeccchhHHHHHHhccCCCCceeeeccccch-hhHHHHHHhccCceEEEeccccCCCCCeehhhcChhh
Confidence            77 789999999998876555   4553  999999999997 6999999999999999999876542 23322233344


Q ss_pred             cEEEE-eec---cCHHH----HHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCCccc
Q 027668          155 KIVGG-SLI---GGLKE----TQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVANTMK  217 (220)
Q Consensus       155 ~~i~~-~~~---~~~~~----~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~~~  217 (220)
                      +++.. +.+   .....    ..+++.++.+|.+++.| |+||++++.+|+..+++.++.||+++.+.++..
T Consensus       264 l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~~ypls~vadA~~diesrktvGkvlLlp~~~~~  335 (336)
T KOG1197|consen  264 LQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDHVYPLSKVADAHADIESRKTVGKVLLLPGPEKE  335 (336)
T ss_pred             hhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceeeeeecchHHHHHHHHHHHhhhccceEEEeCCcccc
Confidence            44432 211   12222    34567788899999999 899999999999999999999999999987753

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.97  E-value=1.5e-29  Score=202.48  Aligned_cols=208  Identities=24%  Similarity=0.320  Sum_probs=174.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      .+|++.++++|+++++++++++.+.+.++|+++.....+++|++|||+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       136 ~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~  215 (358)
T TIGR03451       136 LVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLE  215 (358)
T ss_pred             EEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            567889999999999999999999999999887766678999999999999999999999999999 5888888887776


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC--cccCccccccC
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--LELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~--~~~~~~~~~~~  153 (220)
                      .+ +++|++.++++.+.   +.+.+.++  ++|++|||+|....+..++++++++|+++.+|.....  .+++...++.+
T Consensus       216 ~~-~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~  294 (358)
T TIGR03451       216 WA-REFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGR  294 (358)
T ss_pred             HH-HHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhc
Confidence            66 78999988887654   33444444  7999999999876788999999999999999986543  45666667788


Q ss_pred             CcEEEEeecc---CHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          154 EKIVGGSLIG---GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       154 ~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      +.++.++...   ...+++.+++++++|.+++.  + ++|+++++++||+.+.+++.. |+++.
T Consensus       295 ~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~~  357 (358)
T TIGR03451       295 GGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVL-RSVVE  357 (358)
T ss_pred             CCEEEEeecCCCCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcc-eeEEe
Confidence            9999988643   45778999999999999763  4 899999999999999888764 77765

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02827 Alcohol dehydrogenase-like

Probab=99.97  E-value=3.7e-29  Score=201.20  Aligned_cols=209  Identities=22%  Similarity=0.300  Sum_probs=173.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++++++.+.+.++|+++.....+++|++|||+|+|++|++++|+++.+|+ .|++++.++++++
T Consensus       153 ~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~  232 (378)
T PLN02827        153 VVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAE  232 (378)
T ss_pred             EechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            568889999999999999999999989999877666668999999999999999999999999999 4777777777766


Q ss_pred             HHHHHcCCcEEecCCCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCCCcccCc-ccccc
Q 027668           81 EAVERLGADSFLVSRDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKPLELPA-FPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~-----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~~~~~~~-~~~~~  152 (220)
                      .+ +++|++.++++.+.     +.+++.++ ++|++|||+|....+..+++.++++ |+++.+|.......++. ..++.
T Consensus       233 ~a-~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~  311 (378)
T PLN02827        233 KA-KTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFL  311 (378)
T ss_pred             HH-HHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHh
Confidence            55 88999988887642     23444444 8999999999876688999999998 99999998754444433 34677


Q ss_pred             CCcEEEEeecc---CHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          153 GEKIVGGSLIG---GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       153 ~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +++++.|+...   ...+++++++++++|.+++  .+ ++|+++++++|++.+.+++. .|+|+++
T Consensus       312 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~vi~~  376 (378)
T PLN02827        312 SGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKC-LRCVIHM  376 (378)
T ss_pred             cCceEEeeecCCCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCc-eEEEEEe
Confidence            99999998664   3457889999999999998  45 89999999999999998876 6999976

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.97  E-value=2.3e-29  Score=200.68  Aligned_cols=208  Identities=23%  Similarity=0.252  Sum_probs=177.6

Q ss_pred             cccCcceeeCCC------CCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668            2 VADEHFVVRIPE------GAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus         2 ~~~~~~~~~~p~------~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      .+|++.++++|+      +++++.++++.+.+.++|+++.+. .+++|++|+|+|+|++|++++|+++.+|++|++++++
T Consensus       121 ~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~a~~~~-~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~  199 (349)
T TIGR03201       121 VVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQAAVQA-GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDID  199 (349)
T ss_pred             EechHHeEECCcccccccCCCHHHhhhhcchHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence            567788999999      899999999999999999999764 5899999999999999999999999999999999998


Q ss_pred             cccHHHHHHHcCCcEEecCCCH------HHHHHhcC--Ccc----EEEEcCCCcccHHHHHhccccCCEEEEecCCCCCc
Q 027668           76 PSKKSEAVERLGADSFLVSRDQ------DEMQAAMG--TMD----GIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL  143 (220)
Q Consensus        76 ~~~~~~~~~~~g~~~v~~~~~~------~~~~~~~~--~~d----~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~  143 (220)
                      +++++.+ +++|++.+++..+.      +.++++++  ++|    .+|||+|....++.++++++++|+++.+|......
T Consensus       200 ~~~~~~~-~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~  278 (349)
T TIGR03201       200 PEKLEMM-KGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKT  278 (349)
T ss_pred             HHHHHHH-HHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCc
Confidence            8887766 78999888876542      22334443  665    89999998877788999999999999999876555


Q ss_pred             ccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCccee--EEEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          144 ELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRAD--IEVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      +++...++.++.++.+++..+..+++.+++++++|.+++.  ++.|+++++++||+.+.+++..+|++++
T Consensus       279 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~g~i~~~~~i~~~~l~~~~~A~~~~~~~~~~~k~~~~  348 (349)
T TIGR03201       279 EYRLSNLMAFHARALGNWGCPPDRYPAALDLVLDGKIQLGPFVERRPLDQIEHVFAAAHHHKLKRRAILT  348 (349)
T ss_pred             ccCHHHHhhcccEEEEEecCCHHHHHHHHHHHHcCCCCcccceEEecHHHHHHHHHHHHcCCccceEEec
Confidence            6666677778899999887778889999999999998763  4789999999999999999888898885

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.97  E-value=1.1e-29  Score=192.22  Aligned_cols=207  Identities=25%  Similarity=0.400  Sum_probs=182.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++++.+++|++++.+++.++++.|+..|.+-+..+...+++|++|.|.|.|.+|++++|-|+..|+ ++++++..++|++
T Consensus       145 vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~  224 (366)
T COG1062         145 VVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLE  224 (366)
T ss_pred             eecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHH
Confidence            578899999999999999999999999999988888889999999999999999999999999999 9999999999887


Q ss_pred             HHHHHcCCcEEecCCCH----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC--cccCccccccC
Q 027668           81 EAVERLGADSFLVSRDQ----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--LELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~--~~~~~~~~~~~  153 (220)
                      .+ ++||+++++|..+.    +.+.++++ |+|++|||+|+...+++++.+..++|+.+++|.....  ++.++..+...
T Consensus       225 ~A-~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g  303 (366)
T COG1062         225 LA-KKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG  303 (366)
T ss_pred             HH-HhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeecc
Confidence            77 89999999999875    34456666 9999999999999999999999999999999987643  55666666655


Q ss_pred             CcEEEEeecc---CHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          154 EKIVGGSLIG---GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       154 ~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                       .+++|+..+   .+.+++.+++++.+|++...  + +.++|+||+|||+.|..++.. |-|+.
T Consensus       304 -r~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~I-R~Vi~  365 (366)
T COG1062         304 -RVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSI-RSVIR  365 (366)
T ss_pred             -ceEEEEeecCCccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCcee-eEEec
Confidence             999999775   46889999999999998865  4 899999999999999998875 55554

>PLN02740 Alcohol dehydrogenase-like

Probab=99.97  E-value=1.5e-28  Score=198.15  Aligned_cols=207  Identities=24%  Similarity=0.358  Sum_probs=171.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|.+.++++|+++++++++.+.+.+.|||+++.....+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++
T Consensus       158 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~  237 (381)
T PLN02740        158 VLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFE  237 (381)
T ss_pred             EEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHH
Confidence            567889999999999999999999999999987666678999999999999999999999999999 6999988888877


Q ss_pred             HHHHHcCCcEEecCCCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCCC--cccCccccc
Q 027668           81 EAVERLGADSFLVSRDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~-----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +++|++.+++..+.     +.+.+.++ ++|++||++|....+..++.+++++ |+++.+|.....  .+++... +
T Consensus       238 ~a-~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~-~  315 (381)
T PLN02740        238 KG-KEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPME-L  315 (381)
T ss_pred             HH-HHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHH-H
Confidence            66 78999888876642     23444444 7999999999877789999999997 999999986543  2333222 3


Q ss_pred             cCCcEEEEeeccC---HHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          152 TGEKIVGGSLIGG---LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.++.|+..++   ..+++++++++.++.+++.  + ++|+++++++|++.+.+++. .|++++
T Consensus       316 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~-~k~~~~  380 (381)
T PLN02740        316 FDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKA-LRCLLH  380 (381)
T ss_pred             hcCCeEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCc-eeEEEe
Confidence            4688999886643   4678999999999998753  5 89999999999999988765 598886

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=1.5e-28  Score=193.20  Aligned_cols=211  Identities=24%  Similarity=0.302  Sum_probs=167.1

Q ss_pred             CcccCcceeeCCCCCCcccccccchhhhhhhhhhHhcc------CCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEe
Q 027668            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYG------LDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS   73 (220)
Q Consensus         1 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~------~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~   73 (220)
                      +++|...++++|+++++.+||+++.++.|||.++....      .+++|++|||+|+ |++|++++|+|+..|+..++++
T Consensus       110 ~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~  189 (347)
T KOG1198|consen  110 VVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTA  189 (347)
T ss_pred             EEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEE
Confidence            36788999999999999999999999999999999988      8999999999986 8999999999999996555566


Q ss_pred             CCcccHHHHHHHcCCcEEecCCCHHHHHHhcC----CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCcc
Q 027668           74 TSPSKKSEAVERLGADSFLVSRDQDEMQAAMG----TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAF  148 (220)
Q Consensus        74 ~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~----~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~  148 (220)
                      .+.++. ++.+++|++.++|+++.+..++..+    +||+||||+|+. .....+.++..+|+...++...+. .+....
T Consensus       190 ~s~e~~-~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg~~-~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~  267 (347)
T KOG1198|consen  190 CSKEKL-ELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVGGS-TLTKSLSCLLKGGGGAYIGLVGDELANYKLD  267 (347)
T ss_pred             cccchH-HHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCCCC-ccccchhhhccCCceEEEEeccccccccccc
Confidence            666665 4458999999999999765554432    899999999997 577788888888765555543321 111111


Q ss_pred             ------------ccccCC-cEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          149 ------------PLLTGE-KIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       149 ------------~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                                  ....++ ....+....+.+.++.+.++++++.+++.+ ++|+++++.+|++.+.++..+||+++.+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ie~gkikp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~  346 (347)
T KOG1198|consen  268 DLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALVELIEKGKIKPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKD  346 (347)
T ss_pred             cchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHHHHHHcCcccCCcceeeeHHHHHHHHHHHhhcCCcceEEEEec
Confidence                        111112 222333445678899999999999999998 89999999999999999888899999875

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=1.3e-28  Score=183.99  Aligned_cols=207  Identities=25%  Similarity=0.378  Sum_probs=182.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      +++...+.+|++..+++.++.+.|+..|+|-+.-+.+.++||+++.|+|.|.+|+++++-+++.|+ ++|.++-++++.+
T Consensus       152 Vv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~  231 (375)
T KOG0022|consen  152 VVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFE  231 (375)
T ss_pred             EeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHH
Confidence            678899999999999999999999999999888888889999999999999999999999999999 9999999999988


Q ss_pred             HHHHHcCCcEEecCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCCC--cccCccccc
Q 027668           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-----~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ ++||++..+|+.+     .+.+.+.++ |+|+.|||+|+.+++++++.+.++| |+-+.+|.....  .++.++.++
T Consensus       232 ~a-k~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~  310 (375)
T KOG0022|consen  232 KA-KEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLV  310 (375)
T ss_pred             HH-HhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhc
Confidence            77 7999999999885     356677776 9999999999999999999999988 999999987654  455555555


Q ss_pred             cCCcEEEEeecc---CHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          152 TGEKIVGGSLIG---GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                       .+.++.|+..+   ++++++.+.+.+.++.++..  | |.++|++|++||+.|.+++.. |-|+.
T Consensus       311 -~GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~Gksi-R~vl~  374 (375)
T KOG0022|consen  311 -TGRTWKGSAFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSI-RCVLW  374 (375)
T ss_pred             -cccEEEEEecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceE-EEEEe
Confidence             58888887664   57889999999999988865  4 999999999999999999876 66664

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.96  E-value=3.5e-28  Score=195.13  Aligned_cols=208  Identities=23%  Similarity=0.355  Sum_probs=169.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|.+.++++|+++++++++++++.+.|||+++.....+++|++|||+|+|++|++++|+|+.+|+ +|++++.++++++
T Consensus       145 ~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~  224 (368)
T TIGR02818       145 VVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFE  224 (368)
T ss_pred             EechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            567889999999999999999999999999998766678999999999999999999999999999 7999988888876


Q ss_pred             HHHHHcCCcEEecCCC--H---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCC--CcccCccccc
Q 027668           81 EAVERLGADSFLVSRD--Q---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~--~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|++.+++..+  .   +.+.+.++ ++|++|||+|....+..++++++++ |+++.+|....  ..+++...++
T Consensus       225 ~a-~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~  303 (368)
T TIGR02818       225 LA-KKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLV  303 (368)
T ss_pred             HH-HHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHh
Confidence            66 7899998887653  1   33444444 8999999999876788999999886 99999998642  2344444444


Q ss_pred             cCCcEEEEeecc---CHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          152 TGEKIVGGSLIG---GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      . +..+.++...   ...++.+++++++++.+++.  + ++|+++++++|++.+.+++. .|+++.+
T Consensus       304 ~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~-~k~~v~~  368 (368)
T TIGR02818       304 T-GRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKS-IRTVIHY  368 (368)
T ss_pred             c-cceEEEeeccCCCcHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCc-eeEEeeC
Confidence            3 4456776543   35678999999999998753  4 89999999999999987764 6998864

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=4.6e-28  Score=192.13  Aligned_cols=208  Identities=33%  Similarity=0.593  Sum_probs=179.8

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      .++.+.++++|+++++.+++++++.+.++|+++... .+.++++|+|+|+|++|++++++++.+|++++++++++++++.
T Consensus       124 ~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~-~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~  202 (333)
T cd08296         124 LAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNS-GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADL  202 (333)
T ss_pred             EEchhheEeCCCCCCHHHhhhhhhhhHHHHHHHHhc-CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHH
Confidence            467788999999999999999999999999999776 6899999999999999999999999999999999998887766


Q ss_pred             HHHHcCCcEEecCCCHHHHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEE
Q 027668           82 AVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGG  159 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~  159 (220)
                      + +++|++.++++.+.+..+.+.  +++|++||++|....+..++++++++|+++.+|......+++...++.++.++.+
T Consensus       203 ~-~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~  281 (333)
T cd08296         203 A-RKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHG  281 (333)
T ss_pred             H-HHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEE
Confidence            6 789999888876643332221  4799999998766578899999999999999998765566666667789999999


Q ss_pred             eeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          160 SLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      +......++..+++++.++.+++.++.|+++++.+||+.+.+++..||+|++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         282 WPSGTALDSEDTLKFSALHGVRPMVETFPLEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             eCcCCHHHHHHHHHHHHhCCCCceEEEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence            9877788899999999999888767889999999999999999888999874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.96  E-value=3.8e-28  Score=193.65  Aligned_cols=208  Identities=21%  Similarity=0.278  Sum_probs=168.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      .+|++.++++|+++++++++.+. ...++++++.. ..+++|++|+|+|+|++|++++|+|+.+|++ |+++++++++++
T Consensus       122 ~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~~~-~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~  199 (347)
T PRK10309        122 VVKRKNLFALPTDMPIEDGAFIE-PITVGLHAFHL-AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLA  199 (347)
T ss_pred             EeehHHeEECcCCCCHHHhhhhh-HHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            56788999999999999998764 34557777654 4578999999999999999999999999996 678888887776


Q ss_pred             HHHHHcCCcEEecCCCH--HHHHHhcC--Ccc-EEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCc---ccccc
Q 027668           81 EAVERLGADSFLVSRDQ--DEMQAAMG--TMD-GIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA---FPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~--~~~~~~~~--~~d-~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~---~~~~~  152 (220)
                      .+ +++|++.+++..+.  +.+.+.++  ++| ++|||+|....+..++++++++|+++.+|......+++.   ..++.
T Consensus       200 ~~-~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~  278 (347)
T PRK10309        200 LA-KSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFGKILR  278 (347)
T ss_pred             HH-HHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCcccChhhhhHHhh
Confidence            65 78999888876642  33444443  788 999999987678999999999999999998754433332   34677


Q ss_pred             CCcEEEEeecc-----CHHHHHHHHHHHHhCCcc--eeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          153 GEKIVGGSLIG-----GLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       153 ~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~--~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +++++.|+..+     ...+++++++++++|.+.  +.+ ++|+++++++|++.+.+++..+|+++++
T Consensus       279 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  346 (347)
T PRK10309        279 KELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI  346 (347)
T ss_pred             cCcEEEEEeccccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence            89999998653     246789999999999986  345 8999999999999999888789999875

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.96  E-value=9.6e-28  Score=192.48  Aligned_cols=206  Identities=25%  Similarity=0.395  Sum_probs=169.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++.+.+.|||+++.....+++|++|+|+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       144 ~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~  223 (365)
T cd08277         144 VVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFE  223 (365)
T ss_pred             EEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            567789999999999999999999999999987666678999999999999999999999999999 7988988888776


Q ss_pred             HHHHHcCCcEEecCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCC-CcccCcccccc
Q 027668           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK-PLELPAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-----~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~-~~~~~~~~~~~  152 (220)
                      .+ +++|++.+++..+     .+.+++.++ ++|++|||+|....+..++++++++ |+++.+|...+ ..+++...++.
T Consensus       224 ~~-~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~  302 (365)
T cd08277         224 KA-KEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL  302 (365)
T ss_pred             HH-HHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh
Confidence            66 7899988887654     233444444 8999999999876788899999885 99999998653 34455555553


Q ss_pred             CCcEEEEeeccC---HHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          153 GEKIVGGSLIGG---LKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       153 ~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                       ++++.|+..+.   ..++++++++++++.++.  .+ ++|+++++++||+.+.+++ ..|+++
T Consensus       303 -~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~k~~i  364 (365)
T cd08277         303 -GRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGE-CIRTVI  364 (365)
T ss_pred             -CCEEEeeecCCCChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCC-CceEee
Confidence             78898886653   457899999999998764  35 8999999999999998877 468876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.96  E-value=6.1e-28  Score=191.83  Aligned_cols=210  Identities=18%  Similarity=0.176  Sum_probs=169.9

Q ss_pred             cccC-cceeeCC-CCCCcc-cccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668            2 VADE-HFVVRIP-EGAPLD-ATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~~~~-~~~~~~p-~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      ++|+ ..++++| +++++. +++++.+.+.|||+++.....+++|++|||+|+ |++|++++|+|+.+|++|++++++++
T Consensus       108 ~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~  187 (338)
T cd08295         108 LIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDE  187 (338)
T ss_pred             EecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            5677 6899995 678876 788999999999999977777899999999997 99999999999999999999998888


Q ss_pred             cHHHHHHHcCCcEEecCCCH----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-c-----ccC
Q 027668           78 KKSEAVERLGADSFLVSRDQ----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-L-----ELP  146 (220)
Q Consensus        78 ~~~~~~~~~g~~~v~~~~~~----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~-----~~~  146 (220)
                      +.+.+.+.+|++.++++.+.    +.+.+..+ ++|++||++|.. .+..++++++++|+++.+|..... .     ..+
T Consensus       188 ~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  266 (338)
T cd08295         188 KVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNVGGK-MLDAVLLNMNLHGRIAACGMISQYNLEWPEGVRN  266 (338)
T ss_pred             HHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECCCHH-HHHHHHHHhccCcEEEEecccccCCCCCCCCccC
Confidence            87777434999988885432    23344443 899999999985 688999999999999999875432 1     123


Q ss_pred             ccccccCCcEEEEeeccCH-----HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          147 AFPLLTGEKIVGGSLIGGL-----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       147 ~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ...+..++.++.++.....     +.++.+++++.+|.+++.+ ..|+++++++|++.+++++..||+|+++
T Consensus       267 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         267 LLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYVEDIADGLESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             HHHHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEceeecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence            3455677888888654332     3367889999999999876 7899999999999999988889999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.96  E-value=9.5e-28  Score=192.69  Aligned_cols=207  Identities=24%  Similarity=0.369  Sum_probs=167.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      +++++.++++|+++++++++.+++.+.|||+++.....+++|++|||+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       146 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~  225 (368)
T cd08300         146 VVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFE  225 (368)
T ss_pred             EEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            467889999999999999999999999999988666668999999999999999999999999999 7999999988877


Q ss_pred             HHHHHcCCcEEecCCCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCCC--cccCccccc
Q 027668           81 EAVERLGADSFLVSRDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~-----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +++|++.++++.+.     +.+.+.++ ++|+||||+|....+..++++++++ |+++.+|.....  .+++...+.
T Consensus       226 ~~-~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~  304 (368)
T cd08300         226 LA-KKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV  304 (368)
T ss_pred             HH-HHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh
Confidence            66 78999999887653     23344444 8999999999866788999999886 999999976422  333333333


Q ss_pred             cCCcEEEEeec---cCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          152 TGEKIVGGSLI---GGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                       .+.++.++..   ....+++++++++.++.+++.  + ++|+|+++++||+.+.+++. .|++++
T Consensus       305 -~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~-~k~~~~  368 (368)
T cd08300         305 -TGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKS-IRTVVK  368 (368)
T ss_pred             -hcCeEEEEEecccCcHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCC-ceeeeC
Confidence             3346666543   245778999999999999863  5 89999999999999987765 588874

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.96  E-value=9.3e-28  Score=189.81  Aligned_cols=208  Identities=22%  Similarity=0.262  Sum_probs=168.2

Q ss_pred             cccCcceeeC----CCCCCcccc-cccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC
Q 027668            2 VADEHFVVRI----PEGAPLDAT-APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus         2 ~~~~~~~~~~----p~~~~~~~a-a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      +++.+.+.++    |++++++++ +++++.+.|||+++.....+++|++|||+|+ |++|++++|+++..|++|++++++
T Consensus        93 ~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s  172 (325)
T TIGR02825        93 ISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS  172 (325)
T ss_pred             EechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3566676666    999999887 6889999999999877777899999999996 999999999999999999999998


Q ss_pred             cccHHHHHHHcCCcEEecCCCH----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-----Cccc
Q 027668           76 PSKKSEAVERLGADSFLVSRDQ----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-----PLEL  145 (220)
Q Consensus        76 ~~~~~~~~~~~g~~~v~~~~~~----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-----~~~~  145 (220)
                      +++.+.+ +++|++.++++.+.    +.++...+ ++|++|||+|+. .+..++++++++|+++.+|....     ..+.
T Consensus       173 ~~~~~~~-~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~  250 (325)
T TIGR02825       173 DEKVAYL-KKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGE-FSNTVIGQMKKFGRIAICGAISTYNRTGPLPP  250 (325)
T ss_pred             HHHHHHH-HHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCHH-HHHHHHHHhCcCcEEEEecchhhcccCCCCCC
Confidence            8877666 78999999987653    22333333 799999999986 57899999999999999987532     1111


Q ss_pred             --CccccccCCcEEEEeeccC------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          146 --PAFPLLTGEKIVGGSLIGG------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       146 --~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                        ....+..+++++.++....      .+.++.+++++++|.+++.+ ..|+++++++|++.+.+++..+|+|++
T Consensus       251 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       251 GPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLKWVLEGKIQYKEYVIEGFENMPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             CcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHHHHHCCCcccceeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence              1223566788888775421      34688899999999999876 789999999999999998888999863

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.96  E-value=2.7e-27  Score=190.17  Aligned_cols=206  Identities=23%  Similarity=0.395  Sum_probs=170.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++++++++.+.|+|+++.....+++|++|||+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       147 ~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~  226 (369)
T cd08301         147 VVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFE  226 (369)
T ss_pred             EEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            467889999999999999999999999999987766678999999999999999999999999999 7999999988877


Q ss_pred             HHHHHcCCcEEecCCCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCCC--cccCccccc
Q 027668           81 EAVERLGADSFLVSRDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~-----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +++|++.+++..+.     +.+++..+ ++|++|||+|....+..++++++++ |+++.+|.....  .+++...++
T Consensus       227 ~~-~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~  305 (369)
T cd08301         227 QA-KKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLL  305 (369)
T ss_pred             HH-HHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHh
Confidence            66 78999888876541     23344444 7999999999876688899999996 999999987543  334433333


Q ss_pred             cCCcEEEEeecc---CHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          152 TGEKIVGGSLIG---GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       152 ~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                       +++++.|+...   .+.+++++++++.++.++..  + ++|+++++++||+.+.+++.. |+++
T Consensus       306 -~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-k~~~  368 (369)
T cd08301         306 -NGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECL-RCIL  368 (369)
T ss_pred             -cCCeEEEEecCCCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCce-eEEe
Confidence             68999998653   24578999999999988753  4 899999999999999988864 8876

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.96  E-value=4.2e-27  Score=186.93  Aligned_cols=208  Identities=63%  Similarity=1.002  Sum_probs=181.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      .++.+.++++|+++++++++.+.+.+.+||+++.... +++|++++|.|+|++|++++++++.+|++++++++++++.+.
T Consensus       130 ~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~-~~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~  208 (337)
T cd05283         130 VVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNG-VGPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKED  208 (337)
T ss_pred             EechhheEECCCCCCHHHhhhhhhHHHHHHHHHHhcC-CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence            4677899999999999999999999999999998776 799999999888999999999999999999999998887776


Q ss_pred             HHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEee
Q 027668           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSL  161 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~  161 (220)
                      + +++|++.+++..+.+..+...+++|++|||+|....+..++++++++|+++.+|.......++...++.++.++.++.
T Consensus       209 ~-~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~  287 (337)
T cd05283         209 A-LKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSL  287 (337)
T ss_pred             H-HHcCCcEEecCcchhhhhhccCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEec
Confidence            6 689998888776654444444589999999998755889999999999999999865444566666678999999998


Q ss_pred             ccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          162 IGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      ....++++.++++++++.+++.+++++++++++||+.+.+++..+|+|++
T Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         288 IGGRKETQEMLDFAAEHGIKPWVEVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             ccCHHHHHHHHHHHHhCCCccceEEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence            88889999999999999998767889999999999999999988998874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.96  E-value=6.5e-28  Score=191.70  Aligned_cols=203  Identities=16%  Similarity=0.198  Sum_probs=156.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhcc--CCCCCCEEEEEcCchHHHHHHHHHHH-CCC-eEEEEeCCcc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYG--LDKPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPS   77 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~--~~~~~~~vlI~G~g~~G~~~~~~~~~-~g~-~v~~~~~~~~   77 (220)
                      ++|++.++++|+++++++|+.+ ..+.++|+++....  .+++|++|+|+|+|++|++++|+++. .|. +|++++++++
T Consensus       122 ~v~~~~~~~vP~~l~~~~aa~~-~~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~  200 (341)
T cd08237         122 FLPPDRLVKLPDNVDPEVAAFT-ELVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQE  200 (341)
T ss_pred             EEchHHeEECCCCCChHHhhhh-chHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHh
Confidence            5788999999999999887744 47778888886432  35889999999999999999999986 664 8999998888


Q ss_pred             cHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCC---cccHHHHHhccccCCEEEEecCCCCCcccCccccccCC
Q 027668           78 KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA---VHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGE  154 (220)
Q Consensus        78 ~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~---~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~  154 (220)
                      +++.+ ++++....++    +...+  .++|+||||+|.   ...+..++++++++|+++.+|......+++...++.++
T Consensus       201 k~~~a-~~~~~~~~~~----~~~~~--~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~  273 (341)
T cd08237         201 KLDLF-SFADETYLID----DIPED--LAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKG  273 (341)
T ss_pred             HHHHH-hhcCceeehh----hhhhc--cCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhhCc
Confidence            77666 5566553321    11111  279999999994   34688899999999999999976555566667778899


Q ss_pred             cEEEEeeccCHHHHHHHHHHHHhC-----CcceeE-EEEecccH---HHHHHHHHcCCcceEEEEEeC
Q 027668          155 KIVGGSLIGGLKETQEMIDFAAKH-----NIRADI-EVIPADYV---NTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~i-~~~~~~~i---~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      +++.|+..++..++++++++++++     .+++.+ ++|+++++   .++++.+.++ ..+|+|++++
T Consensus       274 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~-~~gKvvi~~~  340 (341)
T cd08237         274 LTLVGSSRSTREDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTN-SWGKTVMEWE  340 (341)
T ss_pred             eEEEEecccCHHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhc-CcceEEEEee
Confidence            999999887778899999999998     455556 88998655   5555444433 5689999864

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.96  E-value=1.8e-27  Score=190.09  Aligned_cols=207  Identities=27%  Similarity=0.362  Sum_probs=174.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++.+ ..+.+||+++. ...+++|++|+|+|+|++|++++|+++.+|+ +|+++++++++.+
T Consensus       134 ~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~-~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~  211 (351)
T cd08233         134 VVPAYHVHKLPDNVPLEEAALV-EPLAVAWHAVR-RSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRE  211 (351)
T ss_pred             EechHHeEECcCCCCHHHhhhc-cHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            4677899999999999988765 57789999994 4558999999999999999999999999999 7888888887776


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCc
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEK  155 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      .+ +++|++.++++.+.+   .+.+..+  ++|++|||+|....+..++++++++|+++.+|......+++...++.+++
T Consensus       212 ~~-~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  290 (351)
T cd08233         212 LA-EELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEK  290 (351)
T ss_pred             HH-HHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCc
Confidence            65 679999998877643   3444443  69999999997667889999999999999999876556677777788999


Q ss_pred             EEEEeeccCHHHHHHHHHHHHhCCcce--eE-EEEecccH-HHHHHHHHcCCcc-eEEEEE
Q 027668          156 IVGGSLIGGLKETQEMIDFAAKHNIRA--DI-EVIPADYV-NTAMERLAKADVR-YRFVID  211 (220)
Q Consensus       156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i-~~a~~~~~~~~~~-~k~v~~  211 (220)
                      ++.++..+..+++++++++++++.+++  .+ ++|+++++ ++|++.+.+++.. +|+++.
T Consensus       291 ~i~g~~~~~~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~  351 (351)
T cd08233         291 TLTGSICYTREDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILVS  351 (351)
T ss_pred             EEEEEeccCcchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence            999998777788999999999999964  35 79999996 7999999888864 899873

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.96  E-value=3.6e-27  Score=187.31  Aligned_cols=210  Identities=27%  Similarity=0.354  Sum_probs=168.4

Q ss_pred             cccCcceee-CCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccH
Q 027668            2 VADEHFVVR-IPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKK   79 (220)
Q Consensus         2 ~~~~~~~~~-~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~   79 (220)
                      .+|.+.+++ +|+++ +.+++++...+.+++++.......+++.+|+|+|+|++|++++++++..|+ +|++++.+++|+
T Consensus       128 ~vp~~~~~~~~pd~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl  206 (350)
T COG1063         128 RVPADFNLAKLPDGI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERL  206 (350)
T ss_pred             EeccccCeecCCCCC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence            466545555 58888 556666777888987774334435666699999999999999999999998 888888888888


Q ss_pred             HHHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCc-ccCccccccC
Q 027668           80 SEAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTG  153 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~-~~~~~~~~~~  153 (220)
                      +.+.+.+|++.+++..+.   ..+.+.++  ++|++|||+|...++..+++.++++|+++.+|...... .++...++.+
T Consensus       207 ~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~k  286 (350)
T COG1063         207 ELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSK  286 (350)
T ss_pred             HHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhc
Confidence            777444778877766552   34445554  69999999998888899999999999999999987654 6777788999


Q ss_pred             CcEEEEeec-cCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCc-ceEEEEEe
Q 027668          154 EKIVGGSLI-GGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADV-RYRFVIDV  212 (220)
Q Consensus       154 ~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~-~~k~v~~~  212 (220)
                      ++++.|+.. ....+|+.+++++++|++++.  + +.++++++++||+.+.+... ..|+++.+
T Consensus       287 el~l~gs~~~~~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         287 ELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             ccEEEeccCCCCcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            999999955 566789999999999999976  3 88999999999999987554 46888764

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.95  E-value=2.6e-27  Score=183.50  Aligned_cols=189  Identities=23%  Similarity=0.261  Sum_probs=157.0

Q ss_pred             cccCc-ceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccH
Q 027668            2 VADEH-FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKK   79 (220)
Q Consensus         2 ~~~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~   79 (220)
                      ++|++ .++++|++++++.++++.+.+.|+|+++++.. ..+|++|+|+|+|++|++++|+++.+|++ |++++++++++
T Consensus        80 ~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~-~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~  158 (280)
T TIGR03366        80 HLPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAG-DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR  158 (280)
T ss_pred             EecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhcc-CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence            56776 69999999999999999999999999997766 47999999999999999999999999996 88887777666


Q ss_pred             HHHHHHcCCcEEecCCCH-HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCC--CCcccCccccccCC
Q 027668           80 SEAVERLGADSFLVSRDQ-DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE--KPLELPAFPLLTGE  154 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~-~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~--~~~~~~~~~~~~~~  154 (220)
                      +.+ +++|++.+++..+. +.+.+.++  ++|++|||+|....++.++++++++|+++.+|...  ...+++...++.++
T Consensus       159 ~~a-~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~  237 (280)
T TIGR03366       159 ELA-LSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRW  237 (280)
T ss_pred             HHH-HHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCC
Confidence            554 78999988876543 33444443  79999999998877899999999999999999753  23567777888999


Q ss_pred             cEEEEeeccCHHHHHHHHHHHHhC--Ccce--eE-EEEecccH
Q 027668          155 KIVGGSLIGGLKETQEMIDFAAKH--NIRA--DI-EVIPADYV  192 (220)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~--~~~~--~i-~~~~~~~i  192 (220)
                      +++.|+..++.++++++++++.++  .++.  .+ ++|+++++
T Consensus       238 ~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       238 LTIRGVHNYEPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             cEEEecCCCCHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            999999888888999999999985  4443  24 88998763

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.95  E-value=2.6e-27  Score=185.77  Aligned_cols=197  Identities=18%  Similarity=0.183  Sum_probs=156.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      ++|++.++++|++++++. +.+. ...+||+++++.  ..++++++|+|+|++|++++|+++++|++ |++++..+++++
T Consensus       108 ~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~~--~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~  183 (308)
T TIGR01202       108 VTPASRVCRLDPALGPQG-ALLA-LAATARHAVAGA--EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRD  183 (308)
T ss_pred             EcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHhc--ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence            578889999999998764 4444 468999999764  34688999999999999999999999996 445555555544


Q ss_pred             HHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEe
Q 027668           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGS  160 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~  160 (220)
                      .+ +.   ..++++.+.     ..+++|++|||+|....++.++++++++|+++++|......+++...++.+++++.++
T Consensus       184 ~a-~~---~~~i~~~~~-----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~  254 (308)
T TIGR01202       184 GA-TG---YEVLDPEKD-----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIA  254 (308)
T ss_pred             hh-hh---ccccChhhc-----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCcccccchhhhcceEEEEe
Confidence            33 22   234443221     2248999999999976789999999999999999987655566666778899999998


Q ss_pred             eccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          161 LIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      ..+..++++++++++++|.+++.  + ++|+++++++||+.+.++...+|++++
T Consensus       255 ~~~~~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       255 AEWQPGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             cccchhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence            87778889999999999999874  4 899999999999998776666899874

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.95  E-value=9.7e-27  Score=186.08  Aligned_cols=205  Identities=21%  Similarity=0.286  Sum_probs=156.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhc------cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeC-
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY------GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST-   74 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~------~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~-   74 (220)
                      ++|++.++++|++++ +.+ ++...+.++++++...      ...++|++|+|+|+|++|++++|+++.+|++|+++++ 
T Consensus       128 ~~~~~~~~~~P~~~~-~~a-~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~  205 (355)
T cd08230         128 VDDPEYLVKVPPSLA-DVG-VLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRR  205 (355)
T ss_pred             EeccccEEECCCCCC-cce-eecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence            578899999999998 443 3444444444443322      1246899999999999999999999999999999887 


Q ss_pred             --CcccHHHHHHHcCCcEEecCCCHHHH-HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccC---
Q 027668           75 --SPSKKSEAVERLGADSFLVSRDQDEM-QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELP---  146 (220)
Q Consensus        75 --~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~---  146 (220)
                        ++++++ +++++|++.+ ++.+.+.. ....+++|+||||+|....+..+++.++++|+++.+|...+  ..+++   
T Consensus       206 ~~~~~~~~-~~~~~Ga~~v-~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~  283 (355)
T cd08230         206 DPPDPKAD-IVEELGATYV-NSSKTPVAEVKLVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGE  283 (355)
T ss_pred             CCCHHHHH-HHHHcCCEEe-cCCccchhhhhhcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhh
Confidence              455555 4478999874 44432211 12234899999999987678899999999999999998764  33444   


Q ss_pred             -ccccccCCcEEEEeeccCHHHHHHHHHHHHhCC------cceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          147 -AFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHN------IRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       147 -~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                       ...++.+++++.|+...+..+++++++++.++.      +++.+ ++|+++++++||+.+.++.  .|+++.+
T Consensus       284 ~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~--~K~v~~~  355 (355)
T cd08230         284 LNRDLVLGNKALVGSVNANKRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE--IKVVIEW  355 (355)
T ss_pred             hhhhHhhcCcEEEEecCCchhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC--eEEEeeC
Confidence             245677999999998877888999999999876      44445 8999999999999886554  5999864

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.95  E-value=1.5e-26  Score=185.42  Aligned_cols=209  Identities=25%  Similarity=0.305  Sum_probs=172.2

Q ss_pred             cccCc-ceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccH
Q 027668            2 VADEH-FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKK   79 (220)
Q Consensus         2 ~~~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~   79 (220)
                      .++++ .++++|++++.+.++++++.+.|||+++......++|++|||+|+|++|++++++|+.+|+ +|+++++++++.
T Consensus       136 ~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~  215 (361)
T cd08231         136 YLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERL  215 (361)
T ss_pred             EecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence            35554 7999999999999998889999999999888866799999999999999999999999999 899998888776


Q ss_pred             HHHHHHcCCcEEecCCCH------HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccc
Q 027668           80 SEAVERLGADSFLVSRDQ------DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFP  149 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~------~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~  149 (220)
                      ..+ +++|++.+++..+.      ..+.+.++  ++|++|||+|....+..++++++++|+++.+|....  ..+++...
T Consensus       216 ~~~-~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  294 (361)
T cd08231         216 ELA-REFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPER  294 (361)
T ss_pred             HHH-HHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHH
Confidence            655 78999888876542      23445543  799999999886568899999999999999997643  23444445


Q ss_pred             cccCCcEEEEeeccCHHHHHHHHHHHHhC--Ccc--eeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          150 LLTGEKIVGGSLIGGLKETQEMIDFAAKH--NIR--ADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       150 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~--~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ++.++.++.++..++.++++++++++.++  .+.  +.+ ++|+++++++||+.+.++.. +|+++.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~-~k~vi~~  361 (361)
T cd08231         295 IVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTA-LKVVIDP  361 (361)
T ss_pred             HhhcccEEEEcccCCchhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCc-eEEEeCC
Confidence            67889999999887788899999999988  443  334 88999999999999988764 7999863

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.95  E-value=2.2e-26  Score=183.06  Aligned_cols=209  Identities=32%  Similarity=0.462  Sum_probs=176.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhc-cCCCCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKK   79 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~   79 (220)
                      .++++.++++|+++++++++++++.+.|||+++... ..+.++++|||+|+|++|++++++++.+| .+|+++++++++.
T Consensus       126 ~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~  205 (340)
T cd05284         126 LVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEAL  205 (340)
T ss_pred             EecHHHeEECCCCCCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHH
Confidence            567789999999999999999999999999999776 45788999999999889999999999999 7999998888777


Q ss_pred             HHHHHHcCCcEEecCCCH--HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCc
Q 027668           80 SEAVERLGADSFLVSRDQ--DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEK  155 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~--~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      +.+ +++|+++++++.+.  +.+.+..+  ++|+++||+|.......++++++++|+++.+|.... ..++....+.++.
T Consensus       206 ~~~-~~~g~~~~~~~~~~~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-~~~~~~~~~~~~~  283 (340)
T cd05284         206 KLA-ERLGADHVLNASDDVVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEI  283 (340)
T ss_pred             HHH-HHhCCcEEEcCCccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-CccCHHHhhhcce
Confidence            666 78999888887654  33444443  799999999975568899999999999999987553 3444444457889


Q ss_pred             EEEEeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          156 IVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ++.++.......+..++++++++.+.+.++.|+++++++|++.+.+++..+|+++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~~~  340 (340)
T cd05284         284 SVIGSLWGTRAELVEVVALAESGKVKVEITKFPLEDANEALDRLREGRVTGRAVLVP  340 (340)
T ss_pred             EEEEEecccHHHHHHHHHHHHhCCCCcceEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence            998887767788999999999999887668899999999999999888888998753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.95  E-value=9.6e-27  Score=184.24  Aligned_cols=209  Identities=18%  Similarity=0.201  Sum_probs=167.2

Q ss_pred             cccCc---ceeeCCCCCCc-----ccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEE
Q 027668            2 VADEH---FVVRIPEGAPL-----DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI   72 (220)
Q Consensus         2 ~~~~~---~~~~~p~~~~~-----~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~   72 (220)
                      +++.+   .++++|++++.     ..++++++.+.|||+++.....+++|++|||+|+ |++|++++|+++.+|++|+++
T Consensus        95 ~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~  174 (329)
T cd08294          95 VSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGC  174 (329)
T ss_pred             EECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEE
Confidence            46777   99999999982     2234678899999999977777899999999996 999999999999999999999


Q ss_pred             eCCcccHHHHHHHcCCcEEecCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--Cc---
Q 027668           73 STSPSKKSEAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PL---  143 (220)
Q Consensus        73 ~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~---  143 (220)
                      ++++++.+.+ +++|++.++++.+.+   .+++..+ ++|++||++|.. .+..++++++++|+++.+|....  ..   
T Consensus       175 ~~s~~~~~~l-~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~  252 (329)
T cd08294         175 AGSDDKVAWL-KELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGGE-FSSTVLSHMNDFGRVAVCGSISTYNDKEPK  252 (329)
T ss_pred             eCCHHHHHHH-HHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCHH-HHHHHHHhhccCCEEEEEcchhccCCCCCC
Confidence            9888877666 679999999887643   3444443 899999999985 68899999999999999986421  11   


Q ss_pred             --ccCccccccCCcEEEEeeccCH-----HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          144 --ELPAFPLLTGEKIVGGSLIGGL-----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       144 --~~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                        ......++.+++++.++.....     +.++.++++++++.+++.. .+|+++++++|++.+.+++..+|+++++
T Consensus       253 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         253 KGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYREHVTEGFENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             cCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCCcccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence              1122345668888888764332     3367788999999998765 7899999999999999988889999863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.95  E-value=1.2e-26  Score=183.39  Aligned_cols=204  Identities=17%  Similarity=0.228  Sum_probs=165.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEE-c-CchHHHHHHHHHHHCCCeEEEEeCCcccH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV-G-LGGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~-G-~g~~G~~~~~~~~~~g~~v~~~~~~~~~~   79 (220)
                      ++|++.++++|+++++++++++.+.+.|||.++... .. +++.++|+ | +|++|++++|+++.+|++|++++++++++
T Consensus       104 ~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~-~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~  181 (324)
T cd08291         104 VADAQQCLPLPDGVSFEQGASSFVNPLTALGMLETA-RE-EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQV  181 (324)
T ss_pred             eecHHHeEECCCCCCHHHHhhhcccHHHHHHHHHhh-cc-CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            578889999999999999998888899998665433 33 55666665 4 59999999999999999999999988887


Q ss_pred             HHHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-c-ccCcccccc
Q 027668           80 SEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-L-ELPAFPLLT  152 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~-~~~~~~~~~  152 (220)
                      +.+ +++|++.++++.+.+   .+.+.++  ++|++|||+|.. .....+++++++|+++.+|..... . .++...++.
T Consensus       182 ~~~-~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  259 (324)
T cd08291         182 DLL-KKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGG-LTGQILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIF  259 (324)
T ss_pred             HHH-HHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCcH-HHHHHHHhhCCCCEEEEEEecCCCCcccCCHHHHhh
Confidence            666 679999998876543   3444443  799999999987 467789999999999999975432 2 255556677


Q ss_pred             CCcEEEEeeccC------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          153 GEKIVGGSLIGG------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       153 ~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      ++.++.++....      ...+++++++++ +.+++.+ ++|+++++++||+.+.+++..||+++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~  323 (324)
T cd08291         260 KNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-TELKTTFASRYPLALTLEAIAFYSKNMSTGKKLL  323 (324)
T ss_pred             cCcEEEEEEHHHhhcccCHHHHHHHHHHHh-CccccceeeEEcHHHHHHHHHHHHhCCCCCeEEe
Confidence            899998876543      456788888888 8888877 89999999999999999888899987

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.95  E-value=8.7e-26  Score=179.44  Aligned_cols=210  Identities=25%  Similarity=0.481  Sum_probs=174.8

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHH-CCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKA-MGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~-~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++++++.+.|||+++. ...+++|++|||+|+|++|++++++++. .|++|+++++++++++
T Consensus       123 ~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~~-~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~  201 (338)
T PRK09422        123 IVTADYAVKVPEGLDPAQASSITCAGVTTYKAIK-VSGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLA  201 (338)
T ss_pred             EEchHHeEeCCCCCCHHHeehhhcchhHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHH
Confidence            4567789999999999999999999999999984 4558999999999999999999999998 5999999999988887


Q ss_pred             HHHHHcCCcEEecCCC-H---HHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcE
Q 027668           81 EAVERLGADSFLVSRD-Q---DEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKI  156 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-~---~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      .+ +++|++.+++... .   +.+.+..+++|.+|++.+....+..++++++.+|+++.+|......+++...+..++.+
T Consensus       202 ~~-~~~g~~~v~~~~~~~~~~~~v~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  280 (338)
T PRK09422        202 LA-KEVGADLTINSKRVEDVAKIIQEKTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIE  280 (338)
T ss_pred             HH-HHcCCcEEecccccccHHHHHHHhcCCCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecHHHHhhcCcE
Confidence            77 7899988887753 2   34444555789666555555578999999999999999987654445555566678888


Q ss_pred             EEEeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          157 VGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       157 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      +.++.....+.++.++++++++.+.+.+..+++++++++++.+.++...+|+++.+.
T Consensus       281 ~~~~~~~~~~~~~~~~~l~~~g~l~~~v~~~~~~~~~~a~~~~~~~~~~gkvvv~~~  337 (338)
T PRK09422        281 VVGSLVGTRQDLEEAFQFGAEGKVVPKVQLRPLEDINDIFDEMEQGKIQGRMVIDFT  337 (338)
T ss_pred             EEEecCCCHHHHHHHHHHHHhCCCCccEEEEcHHHHHHHHHHHHcCCccceEEEecC
Confidence            888776677889999999999998776777899999999999998888899998753

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.94  E-value=2.4e-25  Score=177.39  Aligned_cols=210  Identities=14%  Similarity=0.172  Sum_probs=159.7

Q ss_pred             cccCcceeeCCCCCCccc----ccccchhhhhhhhhhHhccCCCCC--CEEEEEcC-chHHHHHHHHHHHCCC-eEEEEe
Q 027668            2 VADEHFVVRIPEGAPLDA----TAPLLCAGITVYSPLRFYGLDKPG--MHVGVVGL-GGLGHVAVKFAKAMGV-KVTVIS   73 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~G~-g~~G~~~~~~~~~~g~-~v~~~~   73 (220)
                      ++|++.++++|+++++.+    ++++...+.|||+++.....+++|  ++|||+|+ |++|++++|+++++|+ +|++++
T Consensus       108 ~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~  187 (345)
T cd08293         108 VLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGIC  187 (345)
T ss_pred             EecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEc
Confidence            578899999999865443    446777899999999777667877  99999997 9999999999999999 899999


Q ss_pred             CCcccHHHHHHHcCCcEEecCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC---CcccC
Q 027668           74 TSPSKKSEAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK---PLELP  146 (220)
Q Consensus        74 ~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~---~~~~~  146 (220)
                      +++++.+.+.+++|++.++++.+.   +.+++.++ ++|++|||+|.. .+..++++++++|+++.+|....   ....+
T Consensus       188 ~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~  266 (345)
T cd08293         188 GSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGGE-ISDTVISQMNENSHIILCGQISQYNKDVPYP  266 (345)
T ss_pred             CCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCcH-HHHHHHHHhccCCEEEEEeeeecccCccCcc
Confidence            998887777556999999887653   34444444 899999999987 47899999999999999985321   11111


Q ss_pred             c------ccc-ccCCcEEEEeeccC-----HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          147 A------FPL-LTGEKIVGGSLIGG-----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       147 ~------~~~-~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .      ..+ ..+..+..+.....     .+.++.++++++++.+++.. ..++++++++|++.+.+++..+|+|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         267 PPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQLSQWVKEGKLKVKETVYEGLENAGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             ccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHHHHHHHCCCccceeEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence            1      011 12333433332111     23467788899999998776 5679999999999999888889999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.94  E-value=1e-25  Score=183.18  Aligned_cols=210  Identities=18%  Similarity=0.220  Sum_probs=163.2

Q ss_pred             ceeeCCCCCCcccccccc---hhhhhhhhhhH--------hccCCCCCCEEEEEcC-chHHHHHHHHHHHCCC---eEEE
Q 027668            7 FVVRIPEGAPLDATAPLL---CAGITVYSPLR--------FYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGV---KVTV   71 (220)
Q Consensus         7 ~~~~~p~~~~~~~aa~~~---~~~~ta~~~l~--------~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~---~v~~   71 (220)
                      .++++|+++++++++.+.   +. .++++++.        ....+++|++|+|+|+ |++|++++|+++.+|+   +|++
T Consensus       130 ~~~~lP~~l~~~~aal~epl~~~-~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~  208 (410)
T cd08238         130 DCLLIYEGDGYAEASLVEPLSCV-IGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVV  208 (410)
T ss_pred             CeEECCCCCCHHHHhhcchHHHH-HHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEE
Confidence            589999999999887542   22 22343322        3345799999999985 9999999999999864   7999


Q ss_pred             EeCCcccHHHHHHHc--------CCc-EEecCCC-H---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668           72 ISTSPSKKSEAVERL--------GAD-SFLVSRD-Q---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus        72 ~~~~~~~~~~~~~~~--------g~~-~v~~~~~-~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      ++.++++++.+ +++        |++ .++++.+ .   +.+.+.++  ++|++||++|....+..++++++++|+++.+
T Consensus       209 ~~~~~~r~~~a-~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~  287 (410)
T cd08238         209 TDVNDERLARA-QRLFPPEAASRGIELLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFF  287 (410)
T ss_pred             EcCCHHHHHHH-HHhccccccccCceEEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEE
Confidence            99998887776 555        655 4666543 2   33445554  7999999998877889999999999988876


Q ss_pred             cCCC-C--CcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          137 GAPE-K--PLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       137 g~~~-~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      +... .  ..+++...++.+++++.|+......+++++++++++|++++.  + ++|+++++++||+.+. ++..+|+|+
T Consensus       288 ~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~-~~~~gKvvl  366 (410)
T cd08238         288 AGPVDKNFSAPLNFYNVHYNNTHYVGTSGGNTDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP-GIPGGKKLI  366 (410)
T ss_pred             EccCCCCccccccHHHhhhcCcEEEEeCCCCHHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh-ccCCceEEE
Confidence            5432 2  245666678889999999988788899999999999999874  4 8999999999999998 667799999


Q ss_pred             EeCCccccC
Q 027668          211 DVANTMKST  219 (220)
Q Consensus       211 ~~~~~~~~~  219 (220)
                      .++-.++.|
T Consensus       367 ~~~~~~~~~  375 (410)
T cd08238         367 YTQKPLPLT  375 (410)
T ss_pred             ECCCCCCCc
Confidence            986554433

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.94  E-value=8e-26  Score=168.54  Aligned_cols=211  Identities=22%  Similarity=0.211  Sum_probs=171.4

Q ss_pred             ccCcceeeCCCCCCcccc--cccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccH
Q 027668            3 ADEHFVVRIPEGAPLDAT--APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         3 ~~~~~~~~~p~~~~~~~a--a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~   79 (220)
                      .+.+.+.|++.+.-+..+  ..+.+.+.|||.+|..++..++|++|+|-|| |++|..+.|+||..|++|+.++.++++.
T Consensus       109 ~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~  188 (340)
T COG2130         109 SDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKC  188 (340)
T ss_pred             echhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHH
Confidence            345667777643322222  2678899999999999999999999999986 9999999999999999999999999999


Q ss_pred             HHHHHHcCCcEEecCCCHHHHHHh---c-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC---C-cc--cC-cc
Q 027668           80 SEAVERLGADSFLVSRDQDEMQAA---M-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK---P-LE--LP-AF  148 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~~~~~~~---~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~---~-~~--~~-~~  148 (220)
                      +.+.+.+|++.++|++..+..+.+   . +|+|+.||++|+. .++..+..|+..+|++.+|..+.   . .+  .. ..
T Consensus       189 ~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVGg~-v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~  267 (340)
T COG2130         189 DFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGGE-VLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLP  267 (340)
T ss_pred             HHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCCch-HHHHHHHhhccccceeeeeehhhcCCCCCCCCcchhh
Confidence            988777999999999986543333   3 3999999999998 69999999999999999997642   1 11  11 22


Q ss_pred             ccccCCcEEEEeeccC------HHHHHHHHHHHHhCCcceeEEE-EecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          149 PLLTGEKIVGGSLIGG------LKETQEMIDFAAKHNIRADIEV-IPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       149 ~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~-~~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      .++.+.+++.|+...+      .+..+++.+|+++|+|+....+ -.+|++++||.-|.++++.||.|+++.+
T Consensus       268 ~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~wv~~GKi~~~eti~dGlEnaP~Af~gLl~G~N~GK~vvKv~~  340 (340)
T COG2130         268 LLMAKRLRVQGFIVASDYDQRFPEALRELGGWVKEGKIQYRETIVDGLENAPEAFIGLLSGKNFGKLVVKVAD  340 (340)
T ss_pred             HHHhhhheeEEEEechhhhhhhHHHHHHHHHHHHcCceeeEeeehhhhhccHHHHHHHhcCCccceEEEEecC
Confidence            3466789999987722      2457788999999999998854 4599999999999999999999999753

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.94  E-value=1.4e-25  Score=181.70  Aligned_cols=207  Identities=20%  Similarity=0.260  Sum_probs=172.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhc--cCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~   78 (220)
                      .++...++++|+++++++++.+.+.+.|||+++...  ..++++++|+|+|+ |++|++++++++.+|+++++++.++++
T Consensus       151 ~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~  230 (393)
T cd08246         151 LVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEK  230 (393)
T ss_pred             EechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence            467789999999999999999999999999998755  56789999999997 999999999999999999888888887


Q ss_pred             HHHHHHHcCCcEEecCCCH-------------------------HHHHHhcC---CccEEEEcCCCcccHHHHHhccccC
Q 027668           79 KSEAVERLGADSFLVSRDQ-------------------------DEMQAAMG---TMDGIIDTVSAVHPLMPLIGLLKSQ  130 (220)
Q Consensus        79 ~~~~~~~~g~~~v~~~~~~-------------------------~~~~~~~~---~~d~vid~~g~~~~~~~~~~~l~~~  130 (220)
                      ++.+ +++|++.+++.++.                         +.+.++++   ++|++|||+|.. .+..++++++++
T Consensus       231 ~~~~-~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~-~~~~~~~~l~~~  308 (393)
T cd08246         231 AEYC-RALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRA-TFPTSVFVCDRG  308 (393)
T ss_pred             HHHH-HHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchH-hHHHHHHHhccC
Confidence            7666 67999888875321                         22333443   699999999985 688999999999


Q ss_pred             CEEEEecCCCC-CcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcC-CcceE
Q 027668          131 GKLVLLGAPEK-PLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKA-DVRYR  207 (220)
Q Consensus       131 g~iv~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~-~~~~k  207 (220)
                      |+++.+|.... ..+++...+..++.++.++.....+.+..++++++++.+.+.+ ++|+++++++|++.+.++ +..+|
T Consensus       309 G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~~gk  388 (393)
T cd08246         309 GMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFANDREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMHRNQHHVGN  388 (393)
T ss_pred             CEEEEEcccCCCCCCCcHHHHhhheeEEEecccCcHHHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHHhCccccce
Confidence            99999986543 2345555667788899998877778899999999999988765 899999999999999988 67788


Q ss_pred             EEE
Q 027668          208 FVI  210 (220)
Q Consensus       208 ~v~  210 (220)
                      +++
T Consensus       389 vvv  391 (393)
T cd08246         389 MAV  391 (393)
T ss_pred             EEE
Confidence            876

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.94  E-value=1.8e-25  Score=177.81  Aligned_cols=209  Identities=34%  Similarity=0.604  Sum_probs=177.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++.+...+.|||+++... .+++++++||+|+ +.+|++++++++++|++|+++++++++.+
T Consensus       126 ~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~~~~-~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~  204 (341)
T cd08297         126 IADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKA-GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLE  204 (341)
T ss_pred             EeccccEEECCCCCCHHHHHHHHcchHHHHHHHHhc-CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence            467889999999999999999999999999998776 5899999999997 67999999999999999999999988877


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +++|++.+++..+.+   .+.+..  +++|++|||.+.......++++++++|+++.+|..... .+++...++.++
T Consensus       205 ~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  283 (341)
T cd08297         205 LA-KELGADAFVDFKKSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRG  283 (341)
T ss_pred             HH-HHcCCcEEEcCCCccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcc
Confidence            66 789998888876543   344443  27999999887666788999999999999999876543 255555556789


Q ss_pred             cEEEEeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          155 KIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .++.+......+.++.++++++++.+.+.++.|++++++++++.+..+...+|+++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         284 ITIVGSLVGTRQDLQEALEFAARGKVKPHIQVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             cEEEEeccCCHHHHHHHHHHHHcCCCcceeEEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            9999877666788999999999999987668899999999999999888888999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.94  E-value=1.9e-25  Score=178.32  Aligned_cols=209  Identities=27%  Similarity=0.368  Sum_probs=174.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++++.+.+.+||++++....+.++++|+|+|+|++|++++|+++..|+ +|++++.++++.+
T Consensus       135 ~~~~~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~  214 (350)
T cd08240         135 IVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLE  214 (350)
T ss_pred             EecHHHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            456778899999999999999999999999999888766789999999889999999999999999 7888888877766


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcE
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKI  156 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      .+ +++|++.+++..+.   +.+.+..+ ++|++||++|....+..++++++++|+++.+|.......++......++.+
T Consensus       215 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~  293 (350)
T cd08240         215 AA-KAAGADVVVNGSDPDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALT  293 (350)
T ss_pred             HH-HHhCCcEEecCCCccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCCcccHHHHhhcCcE
Confidence            66 78999888876653   23333333 799999999976578899999999999999987654433343344558889


Q ss_pred             EEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          157 VGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       157 i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      +.++.....+++..++++++++.+.+.. ..+++++++++++.+.+++..+|+++.
T Consensus       294 i~~~~~~~~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  349 (350)
T cd08240         294 IQGSYVGSLEELRELVALAKAGKLKPIPLTERPLSDVNDALDDLKAGKVVGRAVLK  349 (350)
T ss_pred             EEEcccCCHHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence            9988877778899999999999988654 899999999999999988877898875

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.94  E-value=2e-25  Score=176.27  Aligned_cols=207  Identities=20%  Similarity=0.279  Sum_probs=170.8

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .+++..++++|+++++++++.+++.+.++|+++.. ..+++|++|+|+|+ |.+|++++|+|+.+|++++++.+++++++
T Consensus       100 ~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~-~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~  178 (324)
T cd08292         100 VAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDF-LGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVA  178 (324)
T ss_pred             EEchHHeEECCCCCCHHHhhhccccHHHHHHHHHh-hCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHH
Confidence            46778899999999999999999999999999865 56899999999987 99999999999999999999999888877


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      .+ +++|++.+++..+.+   .+.+.++  ++|++|||+|.. ....++++++++|+++.+|.... ..+++....+.++
T Consensus       179 ~~-~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  256 (324)
T cd08292         179 EL-RALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGGK-LAGELLSLLGEGGTLVSFGSMSGEPMQISSGDLIFKQ  256 (324)
T ss_pred             HH-HhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCCh-hHHHHHHhhcCCcEEEEEecCCCCCCcCCHHHHhhCC
Confidence            77 468998888776543   3444443  799999999986 57899999999999999987532 2445555566789


Q ss_pred             cEEEEeeccC----------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          155 KIVGGSLIGG----------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.++....          ...+..+++++.++.+.+.+ +.|+++++++|++.+.+....+|++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         257 ATVRGFWGGRWSQEMSVEYRKRMIAELLTLALKGQLLLPVEAVFDLGDAAKAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             CEEEEEEcHHhhhhcCHHHHHHHHHHHHHHHHCCCccCccccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence            9998876532          24578899999999998665 899999999999999877767888863

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.94  E-value=5.5e-25  Score=177.58  Aligned_cols=209  Identities=17%  Similarity=0.207  Sum_probs=156.1

Q ss_pred             cccC--cceeeCCCCCCc----ccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEE-eC
Q 027668            2 VADE--HFVVRIPEGAPL----DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVI-ST   74 (220)
Q Consensus         2 ~~~~--~~~~~~p~~~~~----~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~-~~   74 (220)
                      ++|+  ..++++|++++.    ..++++.+.+.++|+++.+ ..+++|++|+|.|+|++|++++|+++.+|++++++ +.
T Consensus       140 ~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~~~-~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~  218 (393)
T TIGR02819       140 MVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGAVT-AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDL  218 (393)
T ss_pred             EechhhCceEECCCcccccccccceeeeccHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence            4554  369999998754    3567788889999999876 45899999999989999999999999999975554 45


Q ss_pred             CcccHHHHHHHcCCcEEecCCC---HHHHHHhcC--CccEEEEcCCCc--------------ccHHHHHhccccCCEEEE
Q 027668           75 SPSKKSEAVERLGADSFLVSRD---QDEMQAAMG--TMDGIIDTVSAV--------------HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~v~~~~~---~~~~~~~~~--~~d~vid~~g~~--------------~~~~~~~~~l~~~g~iv~  135 (220)
                      ++++++.+ +++|++.+....+   .+.+.+.++  ++|++|||+|.+              .+++.+++.++++|+++.
T Consensus       219 ~~~r~~~a-~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~  297 (393)
T TIGR02819       219 NPARLAQA-RSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI  297 (393)
T ss_pred             CHHHHHHH-HHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence            55555544 7899975433322   234555554  799999999986              368999999999999999


Q ss_pred             ecCCC-CCc------------ccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCccee---E-EEEecccHHHHHHH
Q 027668          136 LGAPE-KPL------------ELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRAD---I-EVIPADYVNTAMER  198 (220)
Q Consensus       136 ~g~~~-~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---i-~~~~~~~i~~a~~~  198 (220)
                      +|.+. +..            ++.....+.++.++.++.....+.+..+++++++|++++.   + ++|+++++++||+.
T Consensus       298 ~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~  377 (393)
T TIGR02819       298 PGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQTPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAE  377 (393)
T ss_pred             eeecCCcccccccccccccccccchHHhhccCceEEeccCChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHH
Confidence            99863 111            2223344566777776543333334789999999998753   3 68999999999999


Q ss_pred             HHcCCcceEEEEEeC
Q 027668          199 LAKADVRYRFVIDVA  213 (220)
Q Consensus       199 ~~~~~~~~k~v~~~~  213 (220)
                      +.++. ..|+++.++
T Consensus       378 ~~~~~-~~Kvvi~~~  391 (393)
T TIGR02819       378 FDAGA-AKKFVIDPH  391 (393)
T ss_pred             HhhCC-ceEEEEeCC
Confidence            98775 489999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.94  E-value=3.5e-25  Score=175.87  Aligned_cols=210  Identities=32%  Similarity=0.435  Sum_probs=178.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      .++.+.++++|+++++.+++.+...+.+||+++.....++++++|||.|+|.+|++++++++..|++|++++.++++.+.
T Consensus       125 ~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~  204 (338)
T cd08254         125 VVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLEL  204 (338)
T ss_pred             EechHHeEECCCCCCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            46678899999999999999999999999999988877899999999888999999999999999999999998887776


Q ss_pred             HHHHcCCcEEecCCCHH---HHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEE
Q 027668           82 AVERLGADSFLVSRDQD---EMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIV  157 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~---~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i  157 (220)
                      + +++|.+.+++..+..   .+.... +++|+++||+|....+..++++++++|+++.+|.......++...++.++.++
T Consensus       205 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  283 (338)
T cd08254         205 A-KELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRI  283 (338)
T ss_pred             H-HHhCCCEEEcCCCcCHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHHHHhhCccEE
Confidence            6 779988887766532   221222 27999999998766788999999999999999876544555556677788899


Q ss_pred             EEeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          158 GGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .++.......+..++++++++.+.+.++.+++++++++++.+.+++..+|+++++
T Consensus       284 ~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         284 IGSFGGTPEDLPEVLDLIAKGKLDPQVETRPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             EEeccCCHHHHHHHHHHHHcCCCcccceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            9887777788999999999999887678899999999999999888888999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=4.3e-25  Score=176.26  Aligned_cols=207  Identities=22%  Similarity=0.267  Sum_probs=171.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++.+.+.|||+++. ...+++|++++|+|+ |++|++++++++.+|++++++++++ +++
T Consensus       138 ~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~~-~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~  215 (350)
T cd08274         138 VVPAENAYPVNSPLSDVELATFPCSYSTAENMLE-RAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEE  215 (350)
T ss_pred             EecHHHceeCCCCCCHHHHHhcccHHHHHHHHHh-hcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhH
Confidence            4667789999999999999999999999999984 456899999999997 9999999999999999998888665 665


Q ss_pred             HHHHHcCCcEEecCCCHHHH-HHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCCcE
Q 027668           81 EAVERLGADSFLVSRDQDEM-QAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGEKI  156 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~-~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~~~  156 (220)
                      .+ +++|++.+++....... ...+  .++|++|||+|.. .+..++++++++|+++.+|..... .+++...++.++.+
T Consensus       216 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  293 (350)
T cd08274         216 AV-RALGADTVILRDAPLLADAKALGGEPVDVVADVVGGP-LFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLT  293 (350)
T ss_pred             HH-HhcCCeEEEeCCCccHHHHHhhCCCCCcEEEecCCHH-HHHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceE
Confidence            55 78998766554432111 2222  2899999999986 688999999999999999875433 45666666788999


Q ss_pred             EEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          157 VGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       157 i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +.++.....+.+.++++++.++.+++.+ +.+++++++++++.+..+...+|+++.+
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         294 LFGSTLGTREVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             EEEeecCCHHHHHHHHHHHHCCCcccccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            9998888888899999999999988765 8999999999999999887778998763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.94  E-value=8.4e-25  Score=177.37  Aligned_cols=214  Identities=21%  Similarity=0.260  Sum_probs=177.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHh--ccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRF--YGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~   78 (220)
                      .++.+.++++|+++++++++.+.+.+.+||+++..  ...+.+|++++|+|+ |++|++++++++.+|+++++++.++++
T Consensus       147 ~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~  226 (398)
T TIGR01751       147 LVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEK  226 (398)
T ss_pred             EechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHH
Confidence            46778899999999999999999999999999865  455789999999997 999999999999999998888888777


Q ss_pred             HHHHHHHcCCcEEecCCCH-------------------------HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCC
Q 027668           79 KSEAVERLGADSFLVSRDQ-------------------------DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQG  131 (220)
Q Consensus        79 ~~~~~~~~g~~~v~~~~~~-------------------------~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g  131 (220)
                      ++.+ +++|++.++++.+.                         ..+.+.++  ++|++|||+|.. .+..++++++++|
T Consensus       227 ~~~~-~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~-~~~~~~~~l~~~G  304 (398)
T TIGR01751       227 AEYC-RELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRA-TFPTSVFVCRRGG  304 (398)
T ss_pred             HHHH-HHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHH-HHHHHHHhhccCC
Confidence            6666 67999888876432                         11223333  799999999975 5888999999999


Q ss_pred             EEEEecCCCCC-cccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEE
Q 027668          132 KLVLLGAPEKP-LELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFV  209 (220)
Q Consensus       132 ~iv~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v  209 (220)
                      +++.+|..... .+++...+..++.++.++......++..++++++++.+.+.+ +++++++++++++.+..++..+|+|
T Consensus       305 ~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvv  384 (398)
T TIGR01751       305 MVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFANLREAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVHRNHHQGNVA  384 (398)
T ss_pred             EEEEEccccCCCCCcCHHHHhhcccEEEccccCcHHHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHHcCCCCceEE
Confidence            99999976532 445555566778888888777777788999999999988766 8999999999999999888889999


Q ss_pred             EEeCCccc
Q 027668          210 IDVANTMK  217 (220)
Q Consensus       210 ~~~~~~~~  217 (220)
                      +.+....+
T Consensus       385 v~~~~~~~  392 (398)
T TIGR01751       385 VLVLAPRP  392 (398)
T ss_pred             EEeCCCCC
Confidence            99876543

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=8.3e-25  Score=175.72  Aligned_cols=209  Identities=23%  Similarity=0.417  Sum_probs=172.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++.+...+.|||+++.....+.++++|+|+|+|++|++++++++.+|++ +++++.++++.+
T Consensus       147 ~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~  226 (367)
T cd08263         147 VVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLA  226 (367)
T ss_pred             EechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            4667899999999999999999999999999998887789999999998899999999999999997 888888877766


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccccccC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~~~~~  153 (220)
                      .+ +++|++.+++..+.+   .+....+  ++|++||++++......++++++++|+++.+|....  ...++...++.+
T Consensus       227 ~~-~~~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  305 (367)
T cd08263         227 KA-KELGATHTVNAAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRR  305 (367)
T ss_pred             HH-HHhCCceEecCCcccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhC
Confidence            55 789998888876543   3333332  799999999986457889999999999999986543  234455555568


Q ss_pred             CcEEEEeeccC-HHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          154 EKIVGGSLIGG-LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       154 ~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      +.++.++.... .+.++.++++++++.+.+.  + +.+++++++++++.+.+++..||+|++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         306 GIKIIGSYGARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             CeEEEecCCCCcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence            88888765433 4678899999999998863  3 789999999999999988888899874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=2.2e-24  Score=171.85  Aligned_cols=204  Identities=23%  Similarity=0.290  Sum_probs=172.0

Q ss_pred             ceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc
Q 027668            7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL   86 (220)
Q Consensus         7 ~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~   86 (220)
                      .++++|+++++++++.+...+.+||+++.....+.++++|+|+|+|++|++++++++.+|++|+++++++++.+.+ +++
T Consensus       130 ~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~-~~~  208 (345)
T cd08260         130 NLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELA-REL  208 (345)
T ss_pred             ceEECCCCCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HHh
Confidence            8999999999999999999999999998777778999999999999999999999999999999999998887777 679


Q ss_pred             CCcEEecCCC-HHH---HHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC---cccCccccccCCcEEE
Q 027668           87 GADSFLVSRD-QDE---MQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP---LELPAFPLLTGEKIVG  158 (220)
Q Consensus        87 g~~~v~~~~~-~~~---~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~---~~~~~~~~~~~~~~i~  158 (220)
                      |++.+++..+ .+.   +..... ++|.+|||+|....+...+++++++|+++.+|.....   ..++...+..++.++.
T Consensus       209 g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~  288 (345)
T cd08260         209 GAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIV  288 (345)
T ss_pred             CCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEE
Confidence            9988888776 332   233333 7999999998655688899999999999999876432   2344444557888999


Q ss_pred             EeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          159 GSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      ++.......++.++++++++.+.+.  + +.++++++++|++.+.+++..+|+|++
T Consensus       289 ~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~  344 (345)
T cd08260         289 GSHGMPAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT  344 (345)
T ss_pred             eCCcCCHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence            8877777889999999999988753  4 899999999999999988888888864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.93  E-value=2.2e-24  Score=172.32  Aligned_cols=205  Identities=18%  Similarity=0.237  Sum_probs=163.0

Q ss_pred             cceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH
Q 027668            6 HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE   84 (220)
Q Consensus         6 ~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~   84 (220)
                      ..++++|+++++++++.++..+.|+++++.. ..+++|++|||+|+|++|++++|+++.+|+ .++++++++++.+.+ +
T Consensus       131 ~~~~~lP~~~~~~~aa~~~~~~~ta~~~~~~-~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~-~  208 (351)
T cd08285         131 ANLAPLPDGLTDEQAVMLPDMMSTGFHGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELA-K  208 (351)
T ss_pred             CceEECCCCCCHHHhhhhccchhhHHHHHHc-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-H
Confidence            3899999999999999999999999999754 458999999999999999999999999999 577777777666554 7


Q ss_pred             HcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC--cccCc--cccccCCc
Q 027668           85 RLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--LELPA--FPLLTGEK  155 (220)
Q Consensus        85 ~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~--~~~~~--~~~~~~~~  155 (220)
                      ++|++.+++..+.   +.+.+..+  ++|++|||+|+...+..++++++++|+++.+|.....  ..++.  +....+..
T Consensus       209 ~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  288 (351)
T cd08285         209 EYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHK  288 (351)
T ss_pred             HcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhcccc
Confidence            8999988887653   33434443  7999999999866788999999999999999876542  23331  22234566


Q ss_pred             EEEEeecc-CHHHHHHHHHHHHhCCcce---eE-EEEecccHHHHHHHHHcCCc-ceEEEEEe
Q 027668          156 IVGGSLIG-GLKETQEMIDFAAKHNIRA---DI-EVIPADYVNTAMERLAKADV-RYRFVIDV  212 (220)
Q Consensus       156 ~i~~~~~~-~~~~~~~~~~~~~~~~~~~---~i-~~~~~~~i~~a~~~~~~~~~-~~k~v~~~  212 (220)
                      ++.+.... ..+.++++++++++|.+.+   .+ +.|+++++++|++.+.+++. ..|+++.+
T Consensus       289 ~i~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         289 TINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             EEEEeecCCccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence            77665543 4567899999999999987   23 56999999999999998874 57999864

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.93  E-value=2.6e-24  Score=172.66  Aligned_cols=208  Identities=24%  Similarity=0.356  Sum_probs=168.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      .++++.++++|++++++.++.+++.+.||++++.....++++++|+|+|+|++|++++|+++..|+ +++++++++++.+
T Consensus       146 ~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~  225 (365)
T cd08278         146 VVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLE  225 (365)
T ss_pred             EecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            467789999999999999999999999999998777778999999999989999999999999999 5888878777765


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCC--CCcccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE--KPLELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~--~~~~~~~~~~~~~~  154 (220)
                      .+ +++|++.++++.+.   +.+.+..+ ++|+++||+|....+..++++++++|+++.+|...  ....++...++.++
T Consensus       226 ~~-~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  304 (365)
T cd08278         226 LA-KELGATHVINPKEEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSG  304 (365)
T ss_pred             HH-HHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcC
Confidence            44 78999888887653   33444333 89999999997667889999999999999999753  23455655555788


Q ss_pred             cEEEEeecc---CHHHHHHHHHHHHhCCcce-eE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          155 KIVGGSLIG---GLKETQEMIDFAAKHNIRA-DI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~i~~~~~~---~~~~~~~~~~~~~~~~~~~-~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.++...   ..+.+++++++++++.+.+ .+ ..++++++++|++.+.+++. .|++++
T Consensus       305 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~~~~~-~k~~~~  365 (365)
T cd08278         305 KTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTFYPFEDINQAIADSESGKV-IKPVLR  365 (365)
T ss_pred             ceEEEeecCCcChHHHHHHHHHHHHcCCCChHHheEEecHHHHHHHHHHHHCCCc-eEEEEC
Confidence            888876542   2355788999999998865 23 78999999999999987765 487763

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK10083 putative oxidoreductase; Provisional

Probab=99.93  E-value=4.9e-24  Score=169.51  Aligned_cols=209  Identities=19%  Similarity=0.164  Sum_probs=162.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHH-CCCe-EEEEeCCcccH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKA-MGVK-VTVISTSPSKK   79 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~-~g~~-v~~~~~~~~~~   79 (220)
                      .++.+.++++|++++++.++ +...+.++++++. ...+++|++|+|+|+|++|++++|+++. +|++ ++++++++++.
T Consensus       122 ~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~~~-~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~  199 (339)
T PRK10083        122 VVPAKNAHRIPDAIADQYAV-MVEPFTIAANVTG-RTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERL  199 (339)
T ss_pred             EechHHeEECcCCCCHHHHh-hhchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHH
Confidence            46778899999999988876 5566777786554 4568999999999999999999999996 6995 66666666665


Q ss_pred             HHHHHHcCCcEEecCCCHHHHHHhcC---CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcE
Q 027668           80 SEAVERLGADSFLVSRDQDEMQAAMG---TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKI  156 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~~~~~~~~~---~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      +.+ +++|++.+++..+.+..+.+.+   ++|++||++|....+..++++++++|+++.+|.......++...+..++++
T Consensus       200 ~~~-~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  278 (339)
T PRK10083        200 ALA-KESGADWVINNAQEPLGEALEEKGIKPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELS  278 (339)
T ss_pred             HHH-HHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCceecHHHHhhcceE
Confidence            544 7899998988765433333322   467999999976678999999999999999997654333344444567788


Q ss_pred             EEEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCC-cceEEEEEeCC
Q 027668          157 VGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKAD-VRYRFVIDVAN  214 (220)
Q Consensus       157 i~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~-~~~k~v~~~~~  214 (220)
                      +.++.. ....++.++++++++.+++.  + +.|+++++++|++.+.++. ..+|+++.+.+
T Consensus       279 ~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~  339 (339)
T PRK10083        279 IFSSRL-NANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE  339 (339)
T ss_pred             EEEEec-ChhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence            877654 45679999999999999873  4 8999999999999998654 45899998754

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=4.3e-24  Score=169.72  Aligned_cols=207  Identities=22%  Similarity=0.286  Sum_probs=167.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      .++++ ++++|+++++++++.+ ..+.++++++ ....+.+|++|||+|+|.+|++++|+|+.+|++|+++.+++++.+.
T Consensus       122 ~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~  198 (337)
T cd08261         122 VVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEF  198 (337)
T ss_pred             Eechh-eEECCCCCCHHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHH
Confidence            45677 9999999999999876 5677888887 4556899999999988999999999999999999999888777766


Q ss_pred             HHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcE
Q 027668           82 AVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKI  156 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      + +++|+++++++.+.   +.+.+..+  ++|++|||+|....+..++++++++|+++.+|.......++...+..++.+
T Consensus       199 ~-~~~g~~~v~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~  277 (337)
T cd08261         199 A-RELGADDTINVGDEDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELT  277 (337)
T ss_pred             H-HHhCCCEEecCcccCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccCHHHHHhCCCE
Confidence            6 78999888887753   33444433  699999999876568889999999999999986654444444455567778


Q ss_pred             EEEeeccCHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCC-cceEEEEEe
Q 027668          157 VGGSLIGGLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKAD-VRYRFVIDV  212 (220)
Q Consensus       157 i~~~~~~~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~-~~~k~v~~~  212 (220)
                      +.++.....+.++.+++++.++.+.+  .+ .++++++++++++.+.+++ ..+|+|+++
T Consensus       278 ~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         278 ILGSRNATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             EEEeccCChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            87776566677899999999999987  44 8999999999999998874 668999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.93  E-value=3.9e-24  Score=171.62  Aligned_cols=206  Identities=21%  Similarity=0.349  Sum_probs=167.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++.+.+.+.+||+++.....+++|++|||+|+|++|++++++++.+|++ ++++++++++++
T Consensus       143 ~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~  222 (365)
T cd05279         143 VVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFE  222 (365)
T ss_pred             EecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence            4677899999999999999999999999999887777789999999999999999999999999995 667676777766


Q ss_pred             HHHHHcCCcEEecCCCH--H---HHHHhcC-CccEEEEcCCCcccHHHHHhccc-cCCEEEEecCCC--CCcccCccccc
Q 027668           81 EAVERLGADSFLVSRDQ--D---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLK-SQGKLVLLGAPE--KPLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~--~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~-~~g~iv~~g~~~--~~~~~~~~~~~  151 (220)
                      .+ +++|++.+++..+.  +   .+.+..+ ++|++||++|....+..++++++ ++|+++.+|...  ....++...+ 
T Consensus       223 ~~-~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-  300 (365)
T cd05279         223 KA-KQLGATECINPRDQDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-  300 (365)
T ss_pred             HH-HHhCCCeecccccccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-
Confidence            66 78999888876654  2   2333333 89999999987657889999999 999999998754  3355555555 


Q ss_pred             cCCcEEEEeec---cCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          152 TGEKIVGGSLI---GGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       152 ~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      .++.++.|+..   ...+.+..++++++++.+.+.  . ++++++++++||+.+.+++. .|+++
T Consensus       301 ~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~~~~~  364 (365)
T cd05279         301 LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGES-IRTIL  364 (365)
T ss_pred             hcCCeEEEEeccCCchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCc-eeeee
Confidence            57788888744   345778899999999998763  3 89999999999999987664 46665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=5.8e-24  Score=169.21  Aligned_cols=207  Identities=20%  Similarity=0.234  Sum_probs=162.8

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      +++.+.++++|+++++++++ +...+.+||+++ ....+++|++|+|+|+|++|++++|+++.+|++ ++++++++++.+
T Consensus       123 ~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~-~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~  200 (341)
T cd08262         123 LLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV-RRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRA  200 (341)
T ss_pred             EechHHeEECCCCCCHHHhh-hhhhHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            56778999999999998876 677888999986 455689999999999899999999999999996 555555665555


Q ss_pred             HHHHHcCCcEEecCCCHHH------HHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCcccccc
Q 027668           81 EAVERLGADSFLVSRDQDE------MQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~------~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~  152 (220)
                       ..+++|++.++++.+.+.      +....  +++|++||++|....+..++++++++|+++.+|...............
T Consensus       201 -~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~  279 (341)
T cd08262         201 -LALAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESDNIEPALAIR  279 (341)
T ss_pred             -HHHHcCCcEEEcCCCcCHHHHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCCccCHHHHhh
Confidence             447899988887664321      12222  279999999988545788999999999999998764333333333345


Q ss_pred             CCcEEEEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          153 GEKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       153 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      ++.++.++.....+.++.++++++++.+.+.  + +.+++++++++++.+.+++..+|+|++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         280 KELTLQFSLGYTPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             cceEEEEEecccHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            7788877766677789999999999998752  3 899999999999999988888899874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.93  E-value=3.8e-24  Score=169.81  Aligned_cols=206  Identities=23%  Similarity=0.326  Sum_probs=170.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++.+.+.+.++|+++... .++++++++|+|+ |.+|++++++++.+|++++++++++++++
T Consensus       123 ~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~  201 (334)
T PRK13771        123 KVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAK  201 (334)
T ss_pred             ecchhceEECCCCCCHHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            567789999999999999999999999999999887 6899999999997 99999999999999999999999888877


Q ss_pred             HHHHHcCCcEEecCCC-HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCc--ccCccccccCCcEE
Q 027668           81 EAVERLGADSFLVSRD-QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL--ELPAFPLLTGEKIV  157 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~--~~~~~~~~~~~~~i  157 (220)
                      .+ +++ ++.+++..+ .+.+.+. +++|++|||+|+. ....++++++++|+++.+|......  .......+.++.++
T Consensus       202 ~~-~~~-~~~~~~~~~~~~~v~~~-~~~d~~ld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  277 (334)
T PRK13771        202 IV-SKY-ADYVIVGSKFSEEVKKI-GGADIVIETVGTP-TLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEI  277 (334)
T ss_pred             HH-HHH-HHHhcCchhHHHHHHhc-CCCcEEEEcCChH-HHHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEE
Confidence            66 667 665665542 1233333 4799999999986 5889999999999999999764322  23333345678888


Q ss_pred             EEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          158 GGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .+......++++.++++++++.+++.+ +.++++++++|++.+.++...+|+++.+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  333 (334)
T PRK13771        278 IGHISATKRDVEEALKLVAEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVKP  333 (334)
T ss_pred             EEecCCCHHHHHHHHHHHHcCCCcceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence            887666788899999999999988666 8999999999999999887778998864

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.93  E-value=3.7e-25  Score=188.13  Aligned_cols=214  Identities=21%  Similarity=0.253  Sum_probs=178.8

Q ss_pred             CcccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEc-CchHHHHHHHHHHHCCCeEEEEeCCcccH
Q 027668            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         1 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~g~~G~~~~~~~~~~g~~v~~~~~~~~~~   79 (220)
                      |.++.+.+|.+|.+..+++|+..++.|.|+|++|-..+..++|++|||++ +|++|+++|.+|.+.|++|+.++.+.+++
T Consensus      1511 ~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~VFTTVGSaEKR 1590 (2376)
T KOG1202|consen 1511 VLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTVFTTVGSAEKR 1590 (2376)
T ss_pred             hhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEEEEecCcHHHH
Confidence            35678899999999999999999999999999998888899999999995 59999999999999999999999999999


Q ss_pred             HHHHHHcC---CcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCcccc
Q 027668           80 SEAVERLG---ADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPL  150 (220)
Q Consensus        80 ~~~~~~~g---~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~  150 (220)
                      +.+.+.|.   ...+-|+++.   ..+.+.++  |+|+|+++.... .++..++||+-+|++..+|-.+-+ .+.-.+..
T Consensus      1591 efL~~rFPqLqe~~~~NSRdtsFEq~vl~~T~GrGVdlVLNSLaeE-kLQASiRCLa~~GRFLEIGKfDLSqNspLGMav 1669 (2376)
T KOG1202|consen 1591 EFLLKRFPQLQETNFANSRDTSFEQHVLWHTKGRGVDLVLNSLAEE-KLQASIRCLALHGRFLEIGKFDLSQNSPLGMAV 1669 (2376)
T ss_pred             HHHHHhchhhhhhcccccccccHHHHHHHHhcCCCeeeehhhhhHH-HHHHHHHHHHhcCeeeeecceecccCCcchhhh
Confidence            99988887   3445565552   34445553  999999999987 599999999999999999976532 22223445


Q ss_pred             ccCCcEEEEeec-----cCHHHHHHHHHHHHhCC----cceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCCc
Q 027668          151 LTGEKIVGGSLI-----GGLKETQEMIDFAAKHN----IRADI-EVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       151 ~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~----~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      +.++.+++|...     ...++|+++..++++|.    ..|.. ++|+-+++++||+.|.+++..||+|++.-.+
T Consensus      1670 fLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikvr~e 1744 (2376)
T KOG1202|consen 1670 FLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKVRAE 1744 (2376)
T ss_pred             hhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEEccc
Confidence            679999998755     44577899999998873    44544 8999999999999999999999999998554

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.93  E-value=8.3e-24  Score=168.60  Aligned_cols=208  Identities=19%  Similarity=0.268  Sum_probs=166.7

Q ss_pred             ccCc--ceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccH
Q 027668            3 ADEH--FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKK   79 (220)
Q Consensus         3 ~~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~   79 (220)
                      ++.+  .++++|++++..+++.+.+.+.+||+++.....+.++++++|.|+|.+|++++|+++.+| .+++++++++++.
T Consensus       125 v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~  204 (345)
T cd08286         125 IPHADNSLYKLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRL  204 (345)
T ss_pred             cccccCceEECCCCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHH
Confidence            4544  899999999999999999999999987666667899999999999999999999999999 5888877777665


Q ss_pred             HHHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCC
Q 027668           80 SEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGE  154 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~  154 (220)
                      . +.+++|++.+++..+.+   .+.+..+  ++|++|||+|....+..+++.++++|+++.+|......++++..++.++
T Consensus       205 ~-~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~  283 (345)
T cd08286         205 E-VAKKLGATHTVNSAKGDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKLWIKN  283 (345)
T ss_pred             H-HHHHhCCCceeccccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHHHhhcC
Confidence            5 44789998888876532   2333333  7999999998766688889999999999999975544556666667789


Q ss_pred             cEEEEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCC--cceEEEEEe
Q 027668          155 KIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKAD--VRYRFVIDV  212 (220)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~--~~~k~v~~~  212 (220)
                      .++.+.... .+.+..++++++++.+.+.  + +++++++++++++.+....  ...|+++++
T Consensus       284 ~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         284 ITITTGLVD-TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             cEEEeecCc-hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence            998876442 2568889999999988752  3 8999999999999998653  346998864

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.92  E-value=5.6e-24  Score=169.29  Aligned_cols=209  Identities=20%  Similarity=0.281  Sum_probs=169.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc----
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP----   76 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~----   76 (220)
                      .++.+.++++|+++++++++.+++.+.|+|+++.....+++|++|||+|+ |++|++++|+|++.|++++++++++    
T Consensus       106 ~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~  185 (341)
T cd08290         106 VVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLE  185 (341)
T ss_pred             eccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcch
Confidence            46778999999999999999999999999999987777899999999987 9999999999999999998888876    


Q ss_pred             ccHHHHHHHcCCcEEecCCCH---H---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCcc
Q 027668           77 SKKSEAVERLGADSFLVSRDQ---D---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAF  148 (220)
Q Consensus        77 ~~~~~~~~~~g~~~v~~~~~~---~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~  148 (220)
                      ++.+.+ +++|++.+++..+.   +   .+....+ ++|.+|||+|.. .+...+++++++|+++.+|.... ...++..
T Consensus       186 ~~~~~~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~  263 (341)
T cd08290         186 ELKERL-KALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVGGK-SATELARLLSPGGTMVTYGGMSGQPVTVPTS  263 (341)
T ss_pred             hHHHHH-HhcCCCEEEeCcccccccHHHHHHHHcCCCceEEEECcCcH-hHHHHHHHhCCCCEEEEEeccCCCCcccCHH
Confidence            445555 77999888876653   2   2333333 699999999987 57789999999999999986442 2344554


Q ss_pred             ccccCCcEEEEeeccCH----------HHHHHHHHHHHhCCcceeE-EEE---ecccHHHHHHHHHcCCcceEEEEEe
Q 027668          149 PLLTGEKIVGGSLIGGL----------KETQEMIDFAAKHNIRADI-EVI---PADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       149 ~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~i-~~~---~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .++.++.++.+......          ..+..+++++.++.+.+.. ..+   ++++++++++.+..++..+|+++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         264 LLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAPPVEKVTDDPLEEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             HHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCCcccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence            55778999988765321          1477788899999988765 677   9999999999999888888999864

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.92  E-value=9.8e-24  Score=167.18  Aligned_cols=207  Identities=45%  Similarity=0.737  Sum_probs=172.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      .++.+.++++|+++++++++.+.+.+.+||+++.. ..+.++++|+|+|+|.+|++++++++.+|.+|+++++++++.+.
T Consensus       123 ~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~  201 (330)
T cd08245         123 VADAEYTVLLPDGLPLAQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKREL  201 (330)
T ss_pred             EEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            46778899999999999999999999999999977 45899999999998889999999999999999999999888777


Q ss_pred             HHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCCcEEEEe
Q 027668           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGEKIVGGS  160 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~~~i~~~  160 (220)
                      + +++|++.+++..+.+......+++|++|||++.......++++++++|+++.++..... ..++...++.++.++.++
T Consensus       202 ~-~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (330)
T cd08245         202 A-RKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGS  280 (330)
T ss_pred             H-HHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEe
Confidence            7 67898888776543333222247999999988766788999999999999999865432 222344566788899888


Q ss_pred             eccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEE
Q 027668          161 LIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      .......++.+++++.++.+.+.++.+++++++++|+.+.+++..+|+++
T Consensus       281 ~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         281 THGGRADLQEALDFAAEGKVKPMIETFPLDQANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             ccCCHHHHHHHHHHHHcCCCcceEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence            87777889999999999998876689999999999999998888788764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.92  E-value=1.1e-23  Score=166.29  Aligned_cols=208  Identities=23%  Similarity=0.248  Sum_probs=168.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++.+++.+.|||..+ ....++++++++|+|+ |++|++++++++.+|++++++++++++.+
T Consensus       103 ~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~~-~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~  181 (324)
T cd08244         103 VADVDSLHPVPDGLDLEAAVAVVHDGRTALGLL-DLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTA  181 (324)
T ss_pred             EEchHHeEeCCCCCCHHHHhhhcchHHHHHHHH-HhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            467789999999999999999999999996544 4556899999999996 99999999999999999999998888877


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +++|++.+++..+.+   .+.+..+  ++|+++||+|.. ....++++++++|+++.+|..... ..++....+.++
T Consensus       182 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  259 (324)
T cd08244         182 LV-RALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGGA-IGRAALALLAPGGRFLTYGWASGEWTALDEDDARRRG  259 (324)
T ss_pred             HH-HHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCChH-hHHHHHHHhccCcEEEEEecCCCCCCccCHHHHhhCC
Confidence            66 789998888776543   3333333  799999999987 468899999999999999876432 244444556788


Q ss_pred             cEEEEeeccC------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          155 KIVGGSLIGG------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .++.++....      .+.+..+++++.++.+.+.+ +.|+++++++|++.+.++...+|+++.+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         260 VTVVGLLGVQAERGGLRALEARALAEAAAGRLVPVVGQTFPLERAAEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             cEEEEeecccCCHHHHHHHHHHHHHHHHCCCccCccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence            8888775533      24577788899999887656 8999999999999999888888998763

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.92  E-value=7.1e-24  Score=167.35  Aligned_cols=208  Identities=19%  Similarity=0.242  Sum_probs=170.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++.+++.+.+||+++.....+.+|++++|+|+ |.+|++++++++.+|++++++.+++++++
T Consensus        98 ~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~  177 (323)
T cd05282          98 VAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVE  177 (323)
T ss_pred             ecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHH
Confidence            45677899999999999999999999999999888877899999999997 89999999999999999999999988877


Q ss_pred             HHHHHcCCcEEecCCCHHH---HHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQDE---MQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~---~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +++|++.++++.+.+.   +.+.++  ++|.+|||+|+.. ....+++++++|+++.+|..... ..++...+..++
T Consensus       178 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  255 (323)
T cd05282         178 EL-KALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGGES-ATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFIFKD  255 (323)
T ss_pred             HH-HhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCCCHH-HHHHHHhhCCCCEEEEEccCCCCCCCCCHHHHhhcC
Confidence            77 7899988888776433   333433  7999999999874 67889999999999999876442 344555545588


Q ss_pred             cEEEEeeccCH----------HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          155 KIVGGSLIGGL----------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.+......          +.+..+++++.++.+.+.. +.|++++++++++.+..+...+|++++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  323 (323)
T cd05282         256 ITVRGFWLRQWLHSATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAEQPGRGGKVLLT  323 (323)
T ss_pred             ceEEEEEehHhhccCCHHHHHHHHHHHHHHHhCCCcccCccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence            88887755421          3477788899999988765 899999999999999988777888863

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.92  E-value=1.5e-23  Score=167.01  Aligned_cols=205  Identities=23%  Similarity=0.272  Sum_probs=163.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      +++++.++++|+++++++++.+ ..+.+|++++ ....+++|++++|.|+|.+|++++|+|+.+|++ |+++.+++++.+
T Consensus       124 ~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~  201 (343)
T cd05285         124 NHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLE  201 (343)
T ss_pred             EecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            4677889999999999999876 5778888887 455689999999998899999999999999997 888888777765


Q ss_pred             HHHHHcCCcEEecCCCHH------HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCcccccc
Q 027668           81 EAVERLGADSFLVSRDQD------EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~------~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~  152 (220)
                      .+ +++|++.+++..+.+      .+.+..+  ++|++|||+|....+...+++++++|+++.+|.......++......
T Consensus       202 ~~-~~~g~~~vi~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  280 (343)
T cd05285         202 FA-KELGATHTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASL  280 (343)
T ss_pred             HH-HHcCCcEEeccccccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHhh
Confidence            55 778999888776533      3444443  69999999998646888999999999999998655433444445566


Q ss_pred             CCcEEEEeeccCHHHHHHHHHHHHhCCcc--eeE-EEEecccHHHHHHHHHcCCc-ceEEEE
Q 027668          153 GEKIVGGSLIGGLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKADV-RYRFVI  210 (220)
Q Consensus       153 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~i-~~~~~~~i~~a~~~~~~~~~-~~k~v~  210 (220)
                      ++.++.++.... +.++.++++++++.+.  +.+ ++|+++++.+|++.+.+++. .+|+++
T Consensus       281 ~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~  341 (343)
T cd05285         281 REIDIRGVFRYA-NTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI  341 (343)
T ss_pred             CCcEEEEeccCh-HHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence            788888775443 6788999999999865  333 78999999999999988753 489988

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.92  E-value=1.9e-23  Score=168.81  Aligned_cols=207  Identities=17%  Similarity=0.176  Sum_probs=165.8

Q ss_pred             ccCc--ceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccH
Q 027668            3 ADEH--FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKK   79 (220)
Q Consensus         3 ~~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~   79 (220)
                      ++.+  .++++|+++++++++.++..+.+||+++ ....+.+|++|+|+|+|++|++++++++.+|+ ++++++.++++.
T Consensus       144 v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~  222 (386)
T cd08283         144 VPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERL  222 (386)
T ss_pred             cccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence            4555  7899999999999999999999999999 55668999999999999999999999999998 599988888877


Q ss_pred             HHHHHHcCCcEEecCCCH----HHHHHhcC--CccEEEEcCCCc---------------------ccHHHHHhccccCCE
Q 027668           80 SEAVERLGADSFLVSRDQ----DEMQAAMG--TMDGIIDTVSAV---------------------HPLMPLIGLLKSQGK  132 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~----~~~~~~~~--~~d~vid~~g~~---------------------~~~~~~~~~l~~~g~  132 (220)
                      +.+ ++++...+++..+.    +.+.++.+  ++|++|||+|+.                     ..+..++++++++|+
T Consensus       223 ~~~-~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~  301 (386)
T cd08283         223 EMA-RSHLGAETINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGT  301 (386)
T ss_pred             HHH-HHcCCcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCE
Confidence            666 56633346665543    23334443  799999999753                     246788999999999


Q ss_pred             EEEecCCCC-CcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCC-cceE
Q 027668          133 LVLLGAPEK-PLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKAD-VRYR  207 (220)
Q Consensus       133 iv~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~-~~~k  207 (220)
                      ++.+|.... ...++....+.++.++.++.....+.+..+++++.++.+.+.  + +.++++++++|++.+.++. ..+|
T Consensus       302 iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k  381 (386)
T cd08283         302 VSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIK  381 (386)
T ss_pred             EEEEcCCCCCcCccCHHHHHhCCcEEEeccCCchHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEE
Confidence            999987654 233444456778899988876667789999999999998863  4 8899999999999998776 3479


Q ss_pred             EEEE
Q 027668          208 FVID  211 (220)
Q Consensus       208 ~v~~  211 (220)
                      ++++
T Consensus       382 ~~~~  385 (386)
T cd08283         382 VVLK  385 (386)
T ss_pred             EEec
Confidence            9985

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.92  E-value=1.4e-23  Score=167.42  Aligned_cols=208  Identities=20%  Similarity=0.267  Sum_probs=164.8

Q ss_pred             cccCc--ceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCccc
Q 027668            2 VADEH--FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSK   78 (220)
Q Consensus         2 ~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~   78 (220)
                      +++++  .++++|++++.++++.+++.+.|||+++ ....++++++|+|.|+|.+|++++|+|+.+|. +++++++++++
T Consensus       126 ~v~~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~  204 (347)
T cd05278         126 RVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPER  204 (347)
T ss_pred             EecchhCeEEECCCCCCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHH
Confidence            34555  8999999999999999999999999998 45668999999998889999999999999997 78888777666


Q ss_pred             HHHHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCccc-Ccccccc
Q 027668           79 KSEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLEL-PAFPLLT  152 (220)
Q Consensus        79 ~~~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~-~~~~~~~  152 (220)
                      .+. ++++|++.++++.+.+   .+....+  ++|++||++|....+...+++++++|+++.+|........ ....++.
T Consensus       205 ~~~-~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~  283 (347)
T cd05278         205 LDL-AKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFG  283 (347)
T ss_pred             HHH-HHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhh
Confidence            544 4789998888776543   3334433  7999999998854688899999999999999865433211 1122345


Q ss_pred             CCcEEEEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCc-ceEEEEE
Q 027668          153 GEKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADV-RYRFVID  211 (220)
Q Consensus       153 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~-~~k~v~~  211 (220)
                      ++.++.++.......++.+++++.++.+.+.  + ..+++++++++++.+..++. .+|++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~  346 (347)
T cd05278         284 KNLTFKTGLVPVRARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIR  346 (347)
T ss_pred             ceeEEEeeccCchhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEec
Confidence            7778777655556778999999999998863  3 78999999999999987776 5788875

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.92  E-value=2.1e-23  Score=166.18  Aligned_cols=202  Identities=20%  Similarity=0.280  Sum_probs=163.1

Q ss_pred             cceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH
Q 027668            6 HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE   84 (220)
Q Consensus         6 ~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~   84 (220)
                      ..++++|+++++++++.+++.+.|||+++.. ..+.+|++|+|+|+|.+|++++++++.+|+ ++++++.++++.+.+ +
T Consensus       132 ~~~~~~p~~l~~~~a~~l~~~~~ta~~~~~~-~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~-~  209 (344)
T cd08284         132 GTLLKLPDGLSDEAALLLGDILPTGYFGAKR-AQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERA-A  209 (344)
T ss_pred             CceEECCCCCCHHHhhhhcCchHHHHhhhHh-cCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH-H
Confidence            4999999999999999999999999999976 457899999999989999999999999997 888887776665554 6


Q ss_pred             HcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCCcEEE
Q 027668           85 RLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGEKIVG  158 (220)
Q Consensus        85 ~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~~~i~  158 (220)
                      ++|+.. ++....   ..+.+..+  ++|++|||+|....+..++++++++|+++.+|.... .........+.++.++.
T Consensus       210 ~~g~~~-~~~~~~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~  288 (344)
T cd08284         210 ALGAEP-INFEDAEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLR  288 (344)
T ss_pred             HhCCeE-EecCCcCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEE
Confidence            799753 444432   33444443  799999999976678899999999999999997652 23344445566788887


Q ss_pred             EeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          159 GSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      +........++.+++++.++.+.+.  + +++++++++++++.+.+++. +|+|+.
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~-~k~Vi~  343 (344)
T cd08284         289 FGRCPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKV-LKVVLD  343 (344)
T ss_pred             EecCCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCc-eEEEec
Confidence            6655566789999999999998752  3 88999999999999988777 899875

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.92  E-value=1.2e-23  Score=166.72  Aligned_cols=213  Identities=21%  Similarity=0.284  Sum_probs=172.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|++++..+++++.+.+.+||+++.....+++|++++|+|+ |.+|++++++++.+|++++++.+++++++
T Consensus       100 ~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~  179 (334)
T PTZ00354        100 VAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVD  179 (334)
T ss_pred             EecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            46778899999999999999999999999999988777899999999996 99999999999999999888888888777


Q ss_pred             HHHHHcCCcEEecCCCHH----HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-Ccc-cCcccccc
Q 027668           81 EAVERLGADSFLVSRDQD----EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLE-LPAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~----~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~-~~~~~~~~  152 (220)
                      .+ +++|.+.+++....+    .+.+..+  ++|++|||+|.. .+..++++++++|+++.+|...+ ... ++...+..
T Consensus       180 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~  257 (334)
T PTZ00354        180 FC-KKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGS-YLSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLR  257 (334)
T ss_pred             HH-HHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCchH-HHHHHHHHhccCCeEEEEecCCCCcccccCHHHHHh
Confidence            77 679998888776533    2333332  799999999875 68889999999999999986543 222 55555566


Q ss_pred             CCcEEEEeeccCH----------HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCCcc
Q 027668          153 GEKIVGGSLIGGL----------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       153 ~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~~  216 (220)
                      +..++.++.....          ..++.++++++++.+.+.+ +.+++++++++++.+..++..+|+++++.+..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~~~~  332 (334)
T PTZ00354        258 KRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPIVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVNEPL  332 (334)
T ss_pred             hCCEEEeeeccccchhhhHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHhCCCCceEEEecCCCC
Confidence            7778887654331          2246778889999888755 89999999999999988877789999886653

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=1.4e-23  Score=165.62  Aligned_cols=200  Identities=20%  Similarity=0.234  Sum_probs=160.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      +++.+.++++|++++.++++.+ ....+++.+++ ...+++|++|+|+|+|.+|++++|+++.+|+++++++.++++++.
T Consensus       117 ~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~~~-~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~  194 (319)
T cd08242         117 TLPLENLHVVPDLVPDEQAVFA-EPLAAALEILE-QVPITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLAL  194 (319)
T ss_pred             EechHHeEECcCCCCHHHhhhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence            5677889999999999888754 44456676664 455899999999999999999999999999999999988888776


Q ss_pred             HHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEee
Q 027668           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSL  161 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~  161 (220)
                      + +++|++.+++..+.    ...+++|++|||+|....+..++++++++|+++..+.......++...+..++.++.++.
T Consensus       195 ~-~~~g~~~~~~~~~~----~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~  269 (319)
T cd08242         195 A-RRLGVETVLPDEAE----SEGGGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSR  269 (319)
T ss_pred             H-HHcCCcEEeCcccc----ccCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCccCHHHheecceEEEEEe
Confidence            6 56999887766432    111379999999988656888999999999999877655555556666677888998876


Q ss_pred             ccCHHHHHHHHHHHHhCCcc--eeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          162 IGGLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~--~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ...   +++++++++++.++  +.+ +.|+++++++||+.+..+. .+|+++.+
T Consensus       270 ~~~---~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~k~vi~~  319 (319)
T cd08242         270 CGP---FAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPG-ALKVLLRP  319 (319)
T ss_pred             ccc---HHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCC-ceEEEeCC
Confidence            543   77889999999984  445 8999999999999998666 47998863

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.92  E-value=1.6e-23  Score=166.85  Aligned_cols=205  Identities=21%  Similarity=0.293  Sum_probs=167.4

Q ss_pred             cccCcc-----eeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCC
Q 027668            2 VADEHF-----VVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTS   75 (220)
Q Consensus         2 ~~~~~~-----~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~   75 (220)
                      .++.+.     ++++|+++++.+++.+ +.+.+||+++... .+++|++|+|+|+|.+|++++++++..|.+ +++++.+
T Consensus       122 ~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l~~~-~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s  199 (343)
T cd08235         122 RVPAWAVKRGGVLKLPDNVSFEEAALV-EPLACCINAQRKA-GIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLN  199 (343)
T ss_pred             EecccccccccEEECCCCCCHHHHHhh-hHHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            345555     9999999999999766 7888999999766 689999999998899999999999999998 8888888


Q ss_pred             cccHHHHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC--cccCcc
Q 027668           76 PSKKSEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--LELPAF  148 (220)
Q Consensus        76 ~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~--~~~~~~  148 (220)
                      +++.+.+ +++|.+.++++.+.+   .+.+..+  ++|++|||++....+...+++++++|+++.+|.....  ..++..
T Consensus       200 ~~~~~~~-~~~g~~~~~~~~~~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~  278 (343)
T cd08235         200 EFRLEFA-KKLGADYTIDAAEEDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPN  278 (343)
T ss_pred             HHHHHHH-HHhCCcEEecCCccCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHH
Confidence            8877766 678998888877643   3333433  6999999999765678899999999999999865432  334444


Q ss_pred             ccccCCcEEEEeeccCHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          149 PLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       149 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      ....++.++.++.......++.++++++++.+.+  .+ .++++++++++++.+.+++ .+|+|+
T Consensus       279 ~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~k~vi  342 (343)
T cd08235         279 LIHYREITITGSYAASPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGK-SLKIVI  342 (343)
T ss_pred             HHhhCceEEEEEecCChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCC-cEEEEe
Confidence            5566888888887777788999999999999863  23 7899999999999999888 888886

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.92  E-value=2e-23  Score=165.97  Aligned_cols=206  Identities=21%  Similarity=0.269  Sum_probs=165.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      +++.+.++++|++++.++++. ...+.++|+++...... ++++|||.|+|.+|++++|+++.+|. +++++++++++.+
T Consensus       127 ~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~  204 (339)
T cd08232         127 VVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLA  204 (339)
T ss_pred             EechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            567789999999999998875 57778899999887765 99999998889999999999999999 7888888777665


Q ss_pred             HHHHHcCCcEEecCCCHHHHHHhc---CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEE
Q 027668           81 EAVERLGADSFLVSRDQDEMQAAM---GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIV  157 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~~~~---~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i  157 (220)
                       +.+++|.+.++++.+.+ ..+..   +++|++|||+|....++..+++|+++|+++.+|........+...++.++.++
T Consensus       205 -~~~~~g~~~vi~~~~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  282 (339)
T cd08232         205 -VARAMGADETVNLARDP-LAAYAADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDL  282 (339)
T ss_pred             -HHHHcCCCEEEcCCchh-hhhhhccCCCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccCcHHHHhhcceEE
Confidence             55788988888776543 22222   26999999999755688999999999999999865533333444445678888


Q ss_pred             EEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          158 GGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .+... ....++.++++++++.+++.  + ++|++++++++++.+.++...+|+|+++
T Consensus       283 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  339 (339)
T cd08232         283 RGSFR-FDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF  339 (339)
T ss_pred             EEEec-CHHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence            77754 34568889999999988642  4 7899999999999998887788999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.92  E-value=2.3e-23  Score=164.96  Aligned_cols=201  Identities=29%  Similarity=0.379  Sum_probs=166.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      .++.+.++++|+++++.+++.+.+.+.+||+++ ...+++++++++|+|+|++|++++++++..|.+++++++++++++.
T Consensus       128 ~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~  206 (329)
T cd08298         128 VADERFAYPIPEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQEL  206 (329)
T ss_pred             EecchhEEECCCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHH
Confidence            467788999999999999999999999999999 5667899999999999999999999999999999999999887766


Q ss_pred             HHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCCcEEEEe
Q 027668           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGEKIVGGS  160 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~~~i~~~  160 (220)
                      + +++|++.+++....     ..+++|.++++.+....+..++++++++|+++.+|..... ..++... +.++..+.++
T Consensus       207 ~-~~~g~~~~~~~~~~-----~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~  279 (329)
T cd08298         207 A-RELGADWAGDSDDL-----PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRSV  279 (329)
T ss_pred             H-HHhCCcEEeccCcc-----CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchhh-hhCceEEEEe
Confidence            6 78999877765432     1137999999877666788999999999999998854321 1222222 4567778887


Q ss_pred             eccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEE
Q 027668          161 LIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      .....+.++.++++++++.+.+.+++|+++++++|++.+.+++..+|+++
T Consensus       280 ~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         280 ANLTRQDGEEFLKLAAEIPIKPEVETYPLEEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             cCCCHHHHHHHHHHHHcCCCCceEEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence            77777889999999999998876689999999999999998888888763

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=2.6e-23  Score=162.95  Aligned_cols=204  Identities=23%  Similarity=0.334  Sum_probs=166.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++++.+.+||+++...... +|++++|+|+ |++|++++++++.+|++++.+++++++.+
T Consensus        93 ~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  171 (305)
T cd08270          93 AVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAE  171 (305)
T ss_pred             EEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            467789999999999999999999999999999887754 6999999998 99999999999999999999998888777


Q ss_pred             HHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCcccccc--CCcEE
Q 027668           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLT--GEKIV  157 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~--~~~~i  157 (220)
                      .+ +++|++.++...+ + .  ..+++|+++||+|.. ....++++++.+|+++.+|..... ..++...+..  ++.++
T Consensus       172 ~~-~~~g~~~~~~~~~-~-~--~~~~~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  245 (305)
T cd08270         172 GL-RELGAAEVVVGGS-E-L--SGAPVDLVVDSVGGP-QLARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGGRRL  245 (305)
T ss_pred             HH-HHcCCcEEEeccc-c-c--cCCCceEEEECCCcH-HHHHHHHHhcCCCEEEEEeccCCCcccccHHHHhcccccceE
Confidence            66 5699865543322 1 1  113799999999987 588999999999999999875422 3344444443  68888


Q ss_pred             EEeeccC----HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          158 GGSLIGG----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       158 ~~~~~~~----~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .++....    .+.+..+++++.++.+++.+ +++++++++++++.+.++...+|+++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  305 (305)
T cd08270         246 YTFFLYDGEPLAADLARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALLARRFRGKAVLDV  305 (305)
T ss_pred             EEEEccCHHHHHHHHHHHHHHHHCCCccceeccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            8876653    45688889999999998766 8999999999999999888778998864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.92  E-value=4e-23  Score=164.99  Aligned_cols=204  Identities=18%  Similarity=0.214  Sum_probs=160.4

Q ss_pred             ccCc-ceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            3 ADEH-FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         3 ~~~~-~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      ++++ .++++|++++++.++.+ ..+.++|+++ ....+++|++|+|.|+|.+|++++++++.+|++ ++++++++++. 
T Consensus       136 ~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~-  212 (350)
T cd08256         136 FPKEAIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERL-  212 (350)
T ss_pred             cccccceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHH-
Confidence            4555 57899999999999888 8889999998 455689999999977899999999999999985 56666666655 


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCcccc-ccCC
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL-LTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~-~~~~  154 (220)
                      .+.+++|++.+++..+.   +.+.+..+  ++|++||++|....+..++++++++|+++.+|......+++...+ ..++
T Consensus       213 ~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  292 (350)
T cd08256         213 ALARKFGADVVLNPPEVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSIIGDRKE  292 (350)
T ss_pred             HHHHHcCCcEEecCCCcCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccChhHhhcccc
Confidence            45578999888877643   34444443  799999999975568889999999999999987554333333322 3567


Q ss_pred             cEEEEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          155 KIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      .++.++.... ..+.+++++++++.+++.  + +.|+++++++|++.+.+++..+|+++
T Consensus       293 ~~i~~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         293 LDVLGSHLGP-YCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             cEEEEeccCc-hhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence            7888776543 468889999999999873  4 89999999999999998887788874

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.92  E-value=4.9e-23  Score=162.69  Aligned_cols=209  Identities=22%  Similarity=0.247  Sum_probs=161.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCC--C-CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD--K-PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~--~-~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .++++.++++|+++++++++++++.+.++|+++......  . .+++|+|+|+ |++|++++++++.+|++|++++++++
T Consensus       103 ~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~  182 (325)
T cd05280         103 RVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEE  182 (325)
T ss_pred             EEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            567889999999999999999999999999998765432  4 3579999997 99999999999999999999999988


Q ss_pred             cHHHHHHHcCCcEEecCCCHH--HHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccC
Q 027668           78 KKSEAVERLGADSFLVSRDQD--EMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTG  153 (220)
Q Consensus        78 ~~~~~~~~~g~~~v~~~~~~~--~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~  153 (220)
                      +++.+ +++|++.+++..+.+  ..+... +++|++|||+|.. .+..++++++++|+++.+|.... ...++...++.+
T Consensus       183 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~  260 (325)
T cd05280         183 QADYL-KSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGD-VLANLLKQTKYGGVVASCGNAAGPELTTTVLPFILR  260 (325)
T ss_pred             HHHHH-HhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchH-HHHHHHHhhcCCCEEEEEecCCCCccccccchheee
Confidence            87777 789998888766532  222222 3799999999986 68999999999999999987543 234444455568


Q ss_pred             CcEEEEeeccC--H----HHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          154 EKIVGGSLIGG--L----KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~i~~~~~~~--~----~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +.++.+.....  .    ..++.+.+++..+...+...+|++++++++++.+.+++..+|+++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         261 GVSLLGIDSVNCPMELRKQVWQKLATEWKPDLLEIVVREISLEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             eeEEEEEEeecCchhHHHHHHHHHHHHHhcCCccceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence            88888765432  1    22334444455553333348999999999999999988889998863

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.92  E-value=3.7e-23  Score=162.93  Aligned_cols=207  Identities=22%  Similarity=0.254  Sum_probs=165.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++.+.+.+.+||+++.....+++|++|+|+|+ |++|++++++++.+|++|++++.++++.+
T Consensus       102 ~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~  181 (320)
T cd08243         102 LVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAA  181 (320)
T ss_pred             EcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            46778899999999999999999999999999988877899999999997 99999999999999999999999988776


Q ss_pred             HHHHHcCCcEEecCCC--HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcc---cCcccc--ccC
Q 027668           81 EAVERLGADSFLVSRD--QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLE---LPAFPL--LTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~--~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~---~~~~~~--~~~  153 (220)
                      .+ +++|++.+++...  .+.+.+..+++|.++||+|+. .+..++++++++|+++.+|.......   ......  ..+
T Consensus       182 ~~-~~~g~~~~~~~~~~~~~~i~~~~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~  259 (320)
T cd08243         182 LL-KELGADEVVIDDGAIAEQLRAAPGGFDKVLELVGTA-TLKDSLRHLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGV  259 (320)
T ss_pred             HH-HhcCCcEEEecCccHHHHHHHhCCCceEEEECCChH-HHHHHHHHhccCCEEEEEccCCCCcccCCcchhhhhhhcc
Confidence            66 7899987764432  233444423899999999985 68899999999999999987532211   111111  246


Q ss_pred             CcEEEEeeccC--HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          154 EKIVGGSLIGG--LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       154 ~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      +.++.++....  ...++.++++++++.+.+.. +.++++++++|++.+.+++..+|+++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         260 NLTLTGSSSGDVPQTPLQELFDFVAAGHLDIPPSKVFTFDEIVEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             ceEEEecchhhhhHHHHHHHHHHHHCCceecccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence            67776665432  24578889999999888654 89999999999999988877778875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.92  E-value=4.3e-23  Score=165.52  Aligned_cols=206  Identities=23%  Similarity=0.359  Sum_probs=167.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++.+++.+.+||+++.....+.++++|+|+|+|.+|++++++++..|++ |++++.++++.+
T Consensus       142 ~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~  221 (363)
T cd08279         142 VVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLE  221 (363)
T ss_pred             EeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence            5678899999999999999999999999999987777789999999998899999999999999996 888888877766


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccccccC
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~~~~~  153 (220)
                      .+ +++|++.+++....   ..+.+..  +++|+++|+++....+...+++++++|+++.+|....  ...++...+..+
T Consensus       222 ~~-~~~g~~~vv~~~~~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  300 (363)
T cd08279         222 LA-RRFGATHTVNASEDDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLS  300 (363)
T ss_pred             HH-HHhCCeEEeCCCCccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhc
Confidence            55 78999888877653   3344444  3799999999976568899999999999999986542  345555555556


Q ss_pred             CcEEEEeec---cCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEE
Q 027668          154 EKIVGGSLI---GGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRF  208 (220)
Q Consensus       154 ~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~  208 (220)
                      +..+.++..   .....+++++++++++.+.+.  + ++++++++++|++.+.+++..+.+
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  361 (363)
T cd08279         301 EKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGV  361 (363)
T ss_pred             CcEEEEEEecCcCcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEE
Confidence            777777643   345778999999999998863  4 789999999999999887765333

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.92  E-value=6e-23  Score=165.11  Aligned_cols=207  Identities=22%  Similarity=0.344  Sum_probs=163.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      +++++.++++|+++++++++.+.+.+.+||+++.....+++|++|+|+|+|++|++++++++.+|+ +|+++++++++++
T Consensus       150 ~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~  229 (373)
T cd08299         150 VVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFA  229 (373)
T ss_pred             EecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            578889999999999999999999999999987666678999999999999999999999999999 8999999888877


Q ss_pred             HHHHHcCCcEEecCCCH-----HHHHHhc-CCccEEEEcCCCcccHHHHHhcc-ccCCEEEEecCCCCC--cccCccccc
Q 027668           81 EAVERLGADSFLVSRDQ-----DEMQAAM-GTMDGIIDTVSAVHPLMPLIGLL-KSQGKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~-----~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l-~~~g~iv~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +++|++.+++..+.     +.+.+.. +++|.+|||+|.+..+..++..+ +++|+++.+|.....  .+++... +
T Consensus       230 ~a-~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~-~  307 (373)
T cd08299         230 KA-KELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPML-L  307 (373)
T ss_pred             HH-HHcCCceEecccccchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHHH-H
Confidence            77 78999888876542     2233333 38999999999766677766655 579999999976532  3333322 3


Q ss_pred             cCCcEEEEeecc---CHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          152 TGEKIVGGSLIG---GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.++.++...   ...++.++++.+.++.+++  .+ +.|+++++++|++.+..++. .|+++.
T Consensus       308 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~-~k~~~~  372 (373)
T cd08299         308 LTGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKS-IRTVLT  372 (373)
T ss_pred             hcCCeEEEEEecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCc-ceEEEe
Confidence            467788887653   3356777888887776553  34 89999999999999887664 477775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.92  E-value=3.2e-23  Score=164.59  Aligned_cols=206  Identities=17%  Similarity=0.252  Sum_probs=161.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCC-----CCEEEEEcC-chHHHHHHHHHHHC-CCeEEEEeC
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKP-----GMHVGVVGL-GGLGHVAVKFAKAM-GVKVTVIST   74 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~vlI~G~-g~~G~~~~~~~~~~-g~~v~~~~~   74 (220)
                      +++++.++++|+++++++++.+++.+.|||+++.....+.+     |++|||+|+ |++|++++|+++.+ |++|+++++
T Consensus       103 ~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~  182 (336)
T TIGR02817       103 LVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATAS  182 (336)
T ss_pred             EEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcC
Confidence            56778899999999999999999999999999877666776     999999996 99999999999998 999999999


Q ss_pred             CcccHHHHHHHcCCcEEecCCC--HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccc
Q 027668           75 SPSKKSEAVERLGADSFLVSRD--QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~  151 (220)
                      ++++.+.+ +++|++.++++..  ...+++..+ ++|+++|+++........+++++++|+++.++..   ..++..++.
T Consensus       183 ~~~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~---~~~~~~~~~  258 (336)
T TIGR02817       183 RPESQEWV-LELGAHHVIDHSKPLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDP---AELDISPFK  258 (336)
T ss_pred             cHHHHHHH-HHcCCCEEEECCCCHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEccc---ccccchhhh
Confidence            88887777 7899988887543  233444433 7999999987655688999999999999988532   233333344


Q ss_pred             cCCcEEEEeecc-----C-------HHHHHHHHHHHHhCCcceeE-EEEe---cccHHHHHHHHHcCCcceEEEEE
Q 027668          152 TGEKIVGGSLIG-----G-------LKETQEMIDFAAKHNIRADI-EVIP---ADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~i~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~i-~~~~---~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.++.+....     .       ...++.+++++.++.+++.+ +.++   ++++++|++.+.+++..+|+++.
T Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       259 RKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETFGTINAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             hcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeeccchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence            455555542221     0       13478889999999988754 5554   68999999999988888898875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.92  E-value=6.7e-23  Score=161.90  Aligned_cols=208  Identities=22%  Similarity=0.253  Sum_probs=163.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccC--CCCCC-EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL--DKPGM-HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~--~~~~~-~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .+|.+.++++|+++++++++.+++.+.++++++.....  +.+++ +++|+|+ |++|++++++|+.+|+++++++.+++
T Consensus       102 ~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~  181 (323)
T TIGR02823       102 RVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAE  181 (323)
T ss_pred             EEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            46778999999999999999999999999887754432  68898 9999997 99999999999999999998888888


Q ss_pred             cHHHHHHHcCCcEEecCCCHH-HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCC
Q 027668           78 KKSEAVERLGADSFLVSRDQD-EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGE  154 (220)
Q Consensus        78 ~~~~~~~~~g~~~v~~~~~~~-~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      +++.+ +++|++.+++..+.+ .+..... ++|.++||+|.. .+..++++++++|+++.+|.... ..+++...++.++
T Consensus       182 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  259 (323)
T TIGR02823       182 EEDYL-KELGASEVIDREDLSPPGKPLEKERWAGAVDTVGGH-TLANVLAQLKYGGAVAACGLAGGPDLPTTVLPFILRG  259 (323)
T ss_pred             HHHHH-HhcCCcEEEccccHHHHHHHhcCCCceEEEECccHH-HHHHHHHHhCCCCEEEEEcccCCCCccccHHHHhhcc
Confidence            77666 789998888766533 2333333 699999999986 58899999999999999997643 2333334455788


Q ss_pred             cEEEEeecc--CH----HHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          155 KIVGGSLIG--GL----KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~i~~~~~~--~~----~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.+....  ..    ..+..+.+++.++.+.+.++.++++++++||+.+.+++..+|++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~k~vv~  322 (323)
T TIGR02823       260 VSLLGIDSVYCPMALREAAWQRLATDLKPRNLESITREITLEELPEALEQILAGQHRGRTVVD  322 (323)
T ss_pred             eEEEEEeccccCchhHHHHHHHHHHHhhcCCCcCceeeecHHHHHHHHHHHhCCCccceEEEe
Confidence            888875432  11    2245566667777776545899999999999999988888898875

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.92  E-value=5.2e-23  Score=152.35  Aligned_cols=210  Identities=20%  Similarity=0.254  Sum_probs=171.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      +.+++.++++++.++++.||++....+|||.+|...-.+.+||+|+-.|+ +.+|++++|+|+++|.+-+-+.|+....+
T Consensus       120 v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ie  199 (354)
T KOG0025|consen  120 VFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIE  199 (354)
T ss_pred             eecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHH
Confidence            46788999999999999999999999999999998888999999999998 99999999999999999998888877655


Q ss_pred             HHH---HHcCCcEEecCCCH---HHHHHh--cCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccc
Q 027668           81 EAV---ERLGADSFLVSRDQ---DEMQAA--MGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLL  151 (220)
Q Consensus        81 ~~~---~~~g~~~v~~~~~~---~~~~~~--~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~  151 (220)
                      ++.   +.+|+++|+...+.   +..+..  ..++.+.|||+|+.. .....+.|..||.++.+|..+. +.+++...++
T Consensus       200 el~~~Lk~lGA~~ViTeeel~~~~~~k~~~~~~~prLalNcVGGks-a~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lI  278 (354)
T KOG0025|consen  200 ELKKQLKSLGATEVITEEELRDRKMKKFKGDNPRPRLALNCVGGKS-ATEIARYLERGGTMVTYGGMSKQPVTVPTSLLI  278 (354)
T ss_pred             HHHHHHHHcCCceEecHHHhcchhhhhhhccCCCceEEEeccCchh-HHHHHHHHhcCceEEEecCccCCCcccccchhe
Confidence            553   46799999865432   122121  128999999999985 6678889999999999999875 5788899999


Q ss_pred             cCCcEEEEeeccC-------H----HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcc-eEEEEEe
Q 027668          152 TGEKIVGGSLIGG-------L----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVR-YRFVIDV  212 (220)
Q Consensus       152 ~~~~~i~~~~~~~-------~----~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~-~k~v~~~  212 (220)
                      +|++.++|++...       .    +.+.++.+++..|.++.+. ...++++...|++........ +|-++.+
T Consensus       279 FKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~  352 (354)
T KOG0025|consen  279 FKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNCEKVPLADHKTALDAALSKFGKSGKQIIVL  352 (354)
T ss_pred             eccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccceeeechhhhHHHHHHHHHhccCCceEEEe
Confidence            9999999998833       2    3367788899999999876 788999988888866544332 4665554

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=8.1e-23  Score=162.06  Aligned_cols=208  Identities=30%  Similarity=0.387  Sum_probs=174.8

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      .++.+.++++|+++++.+++.+.+.+.+||+++.....+++|++++|+|+|++|++++++++..|++|++++.++++++.
T Consensus       120 ~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~  199 (336)
T cd08276         120 VLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLER  199 (336)
T ss_pred             EecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            35678899999999999999999999999999988777899999999988999999999999999999999998888777


Q ss_pred             HHHHcCCcEEecCCC-H---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCC
Q 027668           82 AVERLGADSFLVSRD-Q---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGE  154 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~-~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      + +++|.+.+++... .   +.+....+  ++|.+||+++.. .+..++++++++|+++.+|..... ...+...++.++
T Consensus       200 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  277 (336)
T cd08276         200 A-KALGADHVINYRTTPDWGEEVLKLTGGRGVDHVVEVGGPG-TLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKG  277 (336)
T ss_pred             H-HHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEEECCChH-HHHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcc
Confidence            6 5689888887654 2   33444443  899999999865 588899999999999999875432 234455567889


Q ss_pred             cEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          155 KIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.++.......++.+++++.++.+.+.. +.+++++++++++.+.+++..+|++++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  335 (336)
T cd08276         278 ATLRGIAVGSRAQFEAMNRAIEAHRIRPVIDRVFPFEEAKEAYRYLESGSHFGKVVIR  335 (336)
T ss_pred             eEEEEEecCcHHHHHHHHHHHHcCCcccccCcEEeHHHHHHHHHHHHhCCCCceEEEe
Confidence            999998877778899999999998887655 899999999999999888777888875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.91  E-value=3.2e-23  Score=163.88  Aligned_cols=209  Identities=20%  Similarity=0.273  Sum_probs=159.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccC---CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL---DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~---~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .++++.++++|+++++++++.+++.+.|||+++.....   ..++++|+|+|+ |++|++++|+|+.+|++|++++++++
T Consensus       103 ~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~  182 (326)
T cd08289         103 RVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKAD  182 (326)
T ss_pred             EEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHH
Confidence            46778999999999999999999999999988754332   345789999997 99999999999999999999999988


Q ss_pred             cHHHHHHHcCCcEEecCCCH--HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccC
Q 027668           78 KKSEAVERLGADSFLVSRDQ--DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTG  153 (220)
Q Consensus        78 ~~~~~~~~~g~~~v~~~~~~--~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~  153 (220)
                      +++.+ +++|++.+++..+.  +.+....+ ++|++|||+|.. .+...+++++++|+++.+|.... ..+++...++.+
T Consensus       183 ~~~~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~-~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~  260 (326)
T cd08289         183 AADYL-KKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGK-TLAYLLSTLQYGGSVAVSGLTGGGEVETTVFPFILR  260 (326)
T ss_pred             HHHHH-HHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHH-HHHHHHHHhhcCCEEEEEeecCCCCCCcchhhhhhc
Confidence            87777 78999888876653  23333333 799999999985 68899999999999999997643 234445556678


Q ss_pred             CcEEEEeeccC--HHHHHHHHHHHHh----CCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          154 EKIVGGSLIGG--LKETQEMIDFAAK----HNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~i~~~~~~~--~~~~~~~~~~~~~----~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +.++.+.....  ......+++.+.+    +.+...+ ++++++++++||+.+.+++..+|+++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         261 GVNLLGIDSVECPMELRRRIWRRLATDLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             cceEEEEEeEecCchHHHHHHHHHHhhcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence            88888874321  1223333333332    2222234 8999999999999999888888998763

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.91  E-value=9e-23  Score=161.60  Aligned_cols=206  Identities=26%  Similarity=0.367  Sum_probs=168.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      +++.+.++++|+++++++++.+++.+.+||+++.. ..+.++++++|+|+ |++|++++++++..|.+++++++++++.+
T Consensus       123 ~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~  201 (332)
T cd08259         123 KVPERSLVKLPDNVSDESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLK  201 (332)
T ss_pred             EechhheEECCCCCCHHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence            46778999999999999999999999999999987 66899999999997 99999999999999999999998877766


Q ss_pred             HHHHHcCCcEEecCCC-HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCc-ccCccccccCCcEEE
Q 027668           81 EAVERLGADSFLVSRD-QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTGEKIVG  158 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~-~~~~~~~~~~~~~i~  158 (220)
                      .+ +++|.+.+++..+ .+.+... .++|++|+++|... ...++++++++|+++.+|...... .++......++.++.
T Consensus       202 ~~-~~~~~~~~~~~~~~~~~~~~~-~~~d~v~~~~g~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~  278 (332)
T cd08259         202 IL-KELGADYVIDGSKFSEDVKKL-GGADVVIELVGSPT-IEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRII  278 (332)
T ss_pred             HH-HHcCCcEEEecHHHHHHHHhc-cCCCEEEECCChHH-HHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEE
Confidence            66 6788877775543 1222222 27999999999874 788999999999999998764322 223333335677787


Q ss_pred             EeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          159 GSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      ++.......++++++++.++.+.+.+ ++|+++++++|++.+.+++..+|++++
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         279 GSISATKADVEEALKLVKEGKIKPVIDRVVSLEDINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             EecCCCHHHHHHHHHHHHcCCCccceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence            77666778899999999999988766 899999999999999988877888863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.91  E-value=5.2e-23  Score=163.89  Aligned_cols=206  Identities=22%  Similarity=0.335  Sum_probs=163.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      .+|++.++++|+++++++++.+ ..+.+||+++. ...++++++|+|+|+|.+|++++|+|+.+|++ ++++++++++.+
T Consensus       121 ~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~  198 (343)
T cd08236         121 SVPARNLIKIPDHVDYEEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLA  198 (343)
T ss_pred             EechHHeEECcCCCCHHHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            5678899999999999999877 67789999987 45589999999998899999999999999997 988888887766


Q ss_pred             HHHHHcCCcEEecCCCH--HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccC---ccccccC
Q 027668           81 EAVERLGADSFLVSRDQ--DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELP---AFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~--~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~---~~~~~~~  153 (220)
                      .+ +++|++.+++..+.  +.+.+..+  ++|++|||+|....+..++++++++|+++.+|.......+.   ...++.+
T Consensus       199 ~l-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  277 (343)
T cd08236         199 VA-RELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRK  277 (343)
T ss_pred             HH-HHcCCCEEecCccccHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhc
Confidence            55 78898888877653  33333333  69999999987656888999999999999998765432222   2233467


Q ss_pred             CcEEEEeeccC-----HHHHHHHHHHHHhCCcc--eeE-EEEecccHHHHHHHHHc-CCcceEEEE
Q 027668          154 EKIVGGSLIGG-----LKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAK-ADVRYRFVI  210 (220)
Q Consensus       154 ~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~--~~i-~~~~~~~i~~a~~~~~~-~~~~~k~v~  210 (220)
                      +.++.++....     .+.++.+.+++.++.+.  +.+ ..+++++++++++.+.+ ....+|+|+
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         278 ELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             CcEEEEEeeccccccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            88888876543     56788899999999876  334 89999999999999998 555678764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.91  E-value=1.2e-22  Score=163.62  Aligned_cols=201  Identities=21%  Similarity=0.193  Sum_probs=160.0

Q ss_pred             ceeeCCCCCCcc---cccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHH
Q 027668            7 FVVRIPEGAPLD---ATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA   82 (220)
Q Consensus         7 ~~~~~p~~~~~~---~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~   82 (220)
                      .++++|++++++   +++++...+.++|+++ ....+.+|++|+|.|+|++|++++|++++.|+ +++++++++++.+.+
T Consensus       139 ~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~  217 (375)
T cd08282         139 NLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLA  217 (375)
T ss_pred             cEEECCCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence            899999999998   5678888999999999 45568999999999889999999999999998 788887877776555


Q ss_pred             HHHcCCcEEecCCCH---HHHHHhcC-CccEEEEcCCCcc-----------cHHHHHhccccCCEEEEecCCCCC-----
Q 027668           83 VERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVH-----------PLMPLIGLLKSQGKLVLLGAPEKP-----  142 (220)
Q Consensus        83 ~~~~g~~~v~~~~~~---~~~~~~~~-~~d~vid~~g~~~-----------~~~~~~~~l~~~g~iv~~g~~~~~-----  142 (220)
                       +++|+. .++..+.   +.+.+.++ ++|++|||+|...           .+..++++++++|+++.+|.....     
T Consensus       218 -~~~g~~-~v~~~~~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~  295 (375)
T cd08282         218 -ESIGAI-PIDFSDGDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAG  295 (375)
T ss_pred             -HHcCCe-EeccCcccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccc
Confidence             689984 4555543   23334443 7999999999762           378899999999999988864311     


Q ss_pred             --------cccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          143 --------LELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       143 --------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                              ..++...++.++..+.++.......+..++++++++.+.+.  + +++++++++++++.+.+++ .+|+|+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~-~~kvvv~  374 (375)
T cd08282         296 DAAAKQGELSFDFGLLWAKGLSFGTGQAPVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL-ETKVVIK  374 (375)
T ss_pred             cccccCccccccHHHHHhcCcEEEEecCCchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC-ceEEEeC
Confidence                    22344445667777777766566778899999999999863  4 9999999999999999888 7899875

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.91  E-value=5.1e-23  Score=162.95  Aligned_cols=208  Identities=24%  Similarity=0.257  Sum_probs=164.6

Q ss_pred             cccC-cceeeCCCCCC--cccccc-cchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc
Q 027668            2 VADE-HFVVRIPEGAP--LDATAP-LLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus         2 ~~~~-~~~~~~p~~~~--~~~aa~-~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      .++. +.++++|++++  +..++. +.+.+.+||+++.....+.++++|+|+|+ |++|++++++++..|++++++++++
T Consensus       101 ~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~  180 (329)
T cd05288         101 VVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSD  180 (329)
T ss_pred             EecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            4567 88999999995  445555 88999999999987777899999999995 9999999999999999999999888


Q ss_pred             ccHHHHHHHcCCcEEecCCCHHH---HHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcc------cC
Q 027668           77 SKKSEAVERLGADSFLVSRDQDE---MQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLE------LP  146 (220)
Q Consensus        77 ~~~~~~~~~~g~~~v~~~~~~~~---~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~------~~  146 (220)
                      ++.+.+.+.+|++.+++..+.+.   +.+.. +++|++|||+|.. .+..++++++++|+++.+|.......      ++
T Consensus       181 ~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~  259 (329)
T cd05288         181 EKCRWLVEELGFDAAINYKTPDLAEALKEAAPDGIDVYFDNVGGE-ILDAALTLLNKGGRIALCGAISQYNATEPPGPKN  259 (329)
T ss_pred             HHHHHHHhhcCCceEEecCChhHHHHHHHhccCCceEEEEcchHH-HHHHHHHhcCCCceEEEEeeccCccccccccccc
Confidence            87776644499988888766432   33333 3899999999986 68899999999999999986543211      22


Q ss_pred             ccccccCCcEEEEeeccCH-----HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          147 AFPLLTGEKIVGGSLIGGL-----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       147 ~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      ....+.++.++.++.....     +.+.++++++.++.+++.. ..+++++++++++.+.+++..+|+++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         260 LGNIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYREDVVEGLENAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             HHHHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCccccccccccHHHHHHHHHHHhcCCCccceeC
Confidence            3445678888888765432     4577888999999988654 77899999999999988776677763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.91  E-value=1e-22  Score=161.03  Aligned_cols=198  Identities=24%  Similarity=0.326  Sum_probs=161.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++++.++++|+++++++++.+++.+.+||+++.. ..+++|++++|+|+ |++|++++++|+.+|++++++++    .+
T Consensus       123 ~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~----~~  197 (325)
T cd08264         123 VVPEKNLFKIPDSISDELAASLPVAALTAYHALKT-AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR----KD  197 (325)
T ss_pred             EcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH----HH
Confidence            46778899999999999999999999999999976 56899999999997 99999999999999999888763    24


Q ss_pred             HHHHHcCCcEEecCCC-HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCCcEEE
Q 027668           81 EAVERLGADSFLVSRD-QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGEKIVG  158 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~~~i~  158 (220)
                      .+ +++|++.+++..+ .+.++...+++|+++|++|.. .+..++++++++|+++.+|.... ...++...++.++.++.
T Consensus       198 ~~-~~~g~~~~~~~~~~~~~l~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~  275 (325)
T cd08264         198 WL-KEFGADEVVDYDEVEEKVKEITKMADVVINSLGSS-FWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISII  275 (325)
T ss_pred             HH-HHhCCCeeecchHHHHHHHHHhCCCCEEEECCCHH-HHHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEE
Confidence            44 6799988887654 233444447899999999985 68899999999999999987532 34555566677888999


Q ss_pred             EeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEE
Q 027668          159 GSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRF  208 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~  208 (220)
                      ++..+.++.++++++++....  ..+ +.|+++++++|++.+..++..+|+
T Consensus       276 ~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~kv  324 (325)
T cd08264         276 GSTGGTRKELLELVKIAKDLK--VKVWKTFKLEEAKEALKELFSKERDGRI  324 (325)
T ss_pred             EccCCCHHHHHHHHHHHHcCC--ceeEEEEcHHHHHHHHHHHHcCCCcccc
Confidence            988888888999999996443  334 899999999999999877765554

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.91  E-value=2.2e-22  Score=160.45  Aligned_cols=203  Identities=19%  Similarity=0.275  Sum_probs=160.4

Q ss_pred             cceeeCCCCCCccccc-----ccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccH
Q 027668            6 HFVVRIPEGAPLDATA-----PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKK   79 (220)
Q Consensus         6 ~~~~~~p~~~~~~~aa-----~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~   79 (220)
                      +.++++|++++++.+.     ++...+.+|++++.. ..+++|++++|.|+|++|++++|+++.+|++ ++++++++++.
T Consensus       128 ~~~~~lP~~l~~~~~~~~~~~~l~~~~~~a~~~~~~-~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~  206 (345)
T cd08287         128 GTLVKVPGSPSDDEDLLPSLLALSDVMGTGHHAAVS-AGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQ  206 (345)
T ss_pred             CceEECCCCCChhhhhhhhhHhhhcHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence            3899999999882221     233678889998864 4589999999998999999999999999995 67776666555


Q ss_pred             HHHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCC
Q 027668           80 SEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGE  154 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~  154 (220)
                       ++.+++|++.++++.+.+   .+.+..+  ++|.++||+|....+..++++++++|+++.+|.......++....+.++
T Consensus       207 -~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~  285 (345)
T cd08287         207 -ALAREFGATDIVAERGEEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRELFFRN  285 (345)
T ss_pred             -HHHHHcCCceEecCCcccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCHHHHHhcc
Confidence             444789999999887643   3444443  7999999998766789999999999999999876544445554556789


Q ss_pred             cEEEEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          155 KIVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.+......+.+++++++++++.+++.  + +.+++++++++++.+...+. .|++++
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-~k~~~~  344 (345)
T cd08287         286 VGLAGGPAPVRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRA-IKVLLR  344 (345)
T ss_pred             eEEEEecCCcHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCc-eEEEeC
Confidence            99988776667789999999999998862  3 88999999999999887664 499885

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.91  E-value=1.5e-22  Score=160.12  Aligned_cols=207  Identities=21%  Similarity=0.259  Sum_probs=161.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++.+.+.+.++|.++.....+.+|++++|+|+ |.+|++++++++.+|+++++++.++++++
T Consensus       100 ~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~  179 (327)
T PRK10754        100 NVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQ  179 (327)
T ss_pred             EcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            46778899999999999999999999999999887777899999999975 99999999999999999999998888876


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +++|++.+++..+.   +.+.+.++  ++|++|||+|.. .....+++++++|+++.+|..... ..++...+..++
T Consensus       180 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  257 (327)
T PRK10754        180 RA-KKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGKD-TWEASLDCLQRRGLMVSFGNASGPVTGVNLGILNQKG  257 (327)
T ss_pred             HH-HHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcHH-HHHHHHHHhccCCEEEEEccCCCCCCCcCHHHHhccC
Confidence            66 78998888876653   33444443  799999999985 578899999999999999875432 122222222222


Q ss_pred             c------EEEEeeccCH----HHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          155 K------IVGGSLIGGL----KETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~------~i~~~~~~~~----~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .      .+.+.. ...    ..+..+++++.++.+++.  . +.|++++++++++.+.+++..+|+|+.
T Consensus       258 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  326 (327)
T PRK10754        258 SLYVTRPSLQGYI-TTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLI  326 (327)
T ss_pred             ceEEecceeeccc-CCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence            1      122221 122    224568889999999864  3 899999999999999988888999985

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.90  E-value=3.4e-22  Score=161.42  Aligned_cols=206  Identities=20%  Similarity=0.261  Sum_probs=159.6

Q ss_pred             cccCcceeeCCCCC-------CcccccccchhhhhhhhhhHhc-cCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEE
Q 027668            2 VADEHFVVRIPEGA-------PLDATAPLLCAGITVYSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVI   72 (220)
Q Consensus         2 ~~~~~~~~~~p~~~-------~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~   72 (220)
                      .++++.++++|+++       +.. ++++...+.+||+++... ..+++|++|+|+|+|++|++++++++.+|+ +|+++
T Consensus       156 ~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~  234 (384)
T cd08265         156 AVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAF  234 (384)
T ss_pred             EechHHeEECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            46778899999864       444 556777889999998655 568999999999889999999999999999 78888


Q ss_pred             eCCcccHHHHHHHcCCcEEecCCCH------HHHHHhcC--CccEEEEcCCCc-ccHHHHHhccccCCEEEEecCCCCCc
Q 027668           73 STSPSKKSEAVERLGADSFLVSRDQ------DEMQAAMG--TMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLGAPEKPL  143 (220)
Q Consensus        73 ~~~~~~~~~~~~~~g~~~v~~~~~~------~~~~~~~~--~~d~vid~~g~~-~~~~~~~~~l~~~g~iv~~g~~~~~~  143 (220)
                      +.++++. ++++++|++.+++..+.      +.+.+.++  ++|+++||.|.. ..+..++++++++|+++.+|......
T Consensus       235 ~~~~~~~-~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~  313 (384)
T cd08265         235 EISEERR-NLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTV  313 (384)
T ss_pred             cCCHHHH-HHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCC
Confidence            8887755 55578999888876532      33444443  799999999864 35678899999999999998765444


Q ss_pred             ccCccccccCCcEEEEeecc-CHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          144 ELPAFPLLTGEKIVGGSLIG-GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      +++...+..+..++.++... ....+.+++++++++.+.+.  + ++|+++++++|++.+.++ ..+|+++
T Consensus       314 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~-~~~kvvv  383 (384)
T cd08265         314 PLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASER-TDGKITI  383 (384)
T ss_pred             cccHHHHhhCceEEEEeeccCCcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcC-CCceEEe
Confidence            44445556677788877542 33468899999999998863  3 889999999999997655 4578775

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.90  E-value=3.9e-22  Score=156.72  Aligned_cols=204  Identities=21%  Similarity=0.287  Sum_probs=160.0

Q ss_pred             cccCcceeeCCCCCCcccccccc-hhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLL-CAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKK   79 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~-~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~   79 (220)
                      .++++.++++|+++  ..+ ++. ..+.++++++. ...++++++++|+|+|.+|++++++|+.+|++ ++++.+++++.
T Consensus        92 ~v~~~~~~~lP~~~--~~~-~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~  167 (312)
T cd08269          92 LADADHAVPLPSLL--DGQ-AFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARL  167 (312)
T ss_pred             EEchhheEECCCch--hhh-HHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHH
Confidence            56788999999998  222 343 77788898887 56689999999998899999999999999998 99888887776


Q ss_pred             HHHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCC-CCcccCccccccC
Q 027668           80 SEAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KPLELPAFPLLTG  153 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~-~~~~~~~~~~~~~  153 (220)
                      + +.+++|++.+++....   +.+.+..+  ++|++|||+|........+++++++|+++.+|... ....++...+..+
T Consensus       168 ~-~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~  246 (312)
T cd08269         168 A-LARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNWK  246 (312)
T ss_pred             H-HHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCHHHHhhc
Confidence            6 4478999888875543   33444443  79999999987656888999999999999998654 2234444455677


Q ss_pred             CcEEEEeeccC----HHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCc-ceEEEE
Q 027668          154 EKIVGGSLIGG----LKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADV-RYRFVI  210 (220)
Q Consensus       154 ~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~-~~k~v~  210 (220)
                      +.++.++....    .+.++.++++++++.+.+  .+ +.+++++++++++.+.+++. .+|+++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         247 GIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI  311 (312)
T ss_pred             CCEEEEecccCccchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence            88877765433    357889999999999886  24 78999999999999998865 478876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.90  E-value=5.8e-22  Score=157.34  Aligned_cols=208  Identities=23%  Similarity=0.286  Sum_probs=171.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++++.+.++++++.....+.++++++|+|+ +.+|++++++++..|++++++++++++.+
T Consensus       126 ~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~  205 (342)
T cd08266         126 AVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLE  205 (342)
T ss_pred             EechHHceeCCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            45677899999999999999999999999999877777899999999997 79999999999999999999998888776


Q ss_pred             HHHHHcCCcEEecCCCHHHH---HHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQDEM---QAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~---~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +.++.+.+++..+.+..   ....  +++|.+++++|.. .+...+++++++|+++.+|..... ..++....+.++
T Consensus       206 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~  283 (342)
T cd08266         206 RA-KELGADYVIDYRKEDFVREVRELTGKRGVDVVVEHVGAA-TWEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQ  283 (342)
T ss_pred             HH-HHcCCCeEEecCChHHHHHHHHHhCCCCCcEEEECCcHH-HHHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcc
Confidence            66 66787777766554332   2222  2799999999986 588899999999999999876532 233433446788


Q ss_pred             cEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          155 KIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.++.......+..++++++++.+.+.+ +.|++++++++++.+.++...+|++++
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  341 (342)
T cd08266         284 LSILGSTMGTKAELDEALRLVFRGKLKPVIDSVFPLEEAAEAHRRLESREQFGKIVLT  341 (342)
T ss_pred             eEEEEEecCCHHHHHHHHHHHHcCCcccceeeeEcHHHHHHHHHHHHhCCCCceEEEe
Confidence            899988877778899999999999888765 899999999999999887777899876

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.90  E-value=5.1e-22  Score=157.94  Aligned_cols=208  Identities=22%  Similarity=0.209  Sum_probs=158.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCC----------CCCCEEEEEcC-chHHHHHHHHHHHCCCeEE
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD----------KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVT   70 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~----------~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~   70 (220)
                      +++.+.++++|+++++++++.+++.+.+||+++.....+          .++++++|+|+ |++|++++++++.+|++++
T Consensus       104 ~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~  183 (339)
T cd08249         104 VADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVI  183 (339)
T ss_pred             EechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCeEE
Confidence            467788999999999999999999999999998765444          78999999997 9999999999999999998


Q ss_pred             EEeCCcccHHHHHHHcCCcEEecCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhcccc--CCEEEEecCCCCCcc
Q 027668           71 VISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKS--QGKLVLLGAPEKPLE  144 (220)
Q Consensus        71 ~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~--~g~iv~~g~~~~~~~  144 (220)
                      ++. ++++++.+ +++|++.+++..+.+   .+.+..+ ++|++||++|.+..+..+++++++  +|+++.+|.......
T Consensus       184 ~~~-~~~~~~~~-~~~g~~~v~~~~~~~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~~  261 (339)
T cd08249         184 TTA-SPKNFDLV-KSLGADAVFDYHDPDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEETE  261 (339)
T ss_pred             EEE-CcccHHHH-HhcCCCEEEECCCchHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCcccc
Confidence            887 45666666 789998888876543   3334433 799999999985578899999999  999999987653221


Q ss_pred             cCccccccCCcEEEEe-------eccCHHHHHHHHHHHHhCCcceeE-EEEe--cccHHHHHHHHHcCC-cceEEEEEe
Q 027668          145 LPAFPLLTGEKIVGGS-------LIGGLKETQEMIDFAAKHNIRADI-EVIP--ADYVNTAMERLAKAD-VRYRFVIDV  212 (220)
Q Consensus       145 ~~~~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~i-~~~~--~~~i~~a~~~~~~~~-~~~k~v~~~  212 (220)
                      +.. ............       .......+..++++++++.+.+.. ..++  ++++++|++.+.+++ ..+|+|+++
T Consensus       262 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         262 PRK-GVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPHPVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             CCC-CceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCCCceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence            110 000011111110       011124577788999999888754 6777  999999999999888 778999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.90  E-value=7.9e-22  Score=156.59  Aligned_cols=207  Identities=19%  Similarity=0.258  Sum_probs=165.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCC-----CCEEEEEcC-chHHHHHHHHHHHCC-CeEEEEeC
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKP-----GMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVIST   74 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~vlI~G~-g~~G~~~~~~~~~~g-~~v~~~~~   74 (220)
                      .++.+.++++|+++++++++.+++.+.++|+++.....+.+     |++|+|+|+ |++|++++++++.+| ++|++++.
T Consensus       104 ~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~  183 (336)
T cd08252         104 LVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATAS  183 (336)
T ss_pred             EEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcC
Confidence            46778899999999999999999999999999876666777     999999996 999999999999999 89999999


Q ss_pred             CcccHHHHHHHcCCcEEecCCC--HHHHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccc
Q 027668           75 SPSKKSEAVERLGADSFLVSRD--QDEMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~v~~~~~--~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~  151 (220)
                      ++++.+.+ +++|++.+++..+  .+.+.... +++|++|||+|....+..++++++++|+++.+|...  ..++...+.
T Consensus       184 ~~~~~~~~-~~~g~~~~~~~~~~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--~~~~~~~~~  260 (336)
T cd08252         184 RPESIAWV-KELGADHVINHHQDLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--EPLDLGPLK  260 (336)
T ss_pred             ChhhHHHH-HhcCCcEEEeCCccHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--Ccccchhhh
Confidence            88887777 7899988887653  12333333 379999999997556889999999999999998653  234444444


Q ss_pred             cCCcEEEEeeccC------------HHHHHHHHHHHHhCCcceeE----EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          152 TGEKIVGGSLIGG------------LKETQEMIDFAAKHNIRADI----EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~i~~~~~~~------------~~~~~~~~~~~~~~~~~~~i----~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.++.+.....            ...+..+++++.++.+.+..    ..+++++++++++.+.++...+|++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         261 SKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             cccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence            6777777643321            13477888999999988653    347999999999999988877888763

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.90  E-value=3.9e-22  Score=158.72  Aligned_cols=207  Identities=17%  Similarity=0.213  Sum_probs=158.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      +++.+.++++|+++++++++.+ ..+.++++++..  ...+|++|+|.|+|++|++++|+++.+|+ +++++++++++.+
T Consensus       126 ~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~  202 (341)
T PRK05396        126 VIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLE  202 (341)
T ss_pred             EechHHeEECcCCCCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            4677889999999999888744 444555554433  24689999999889999999999999999 6777776766654


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCc
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEK  155 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      .+ +++|++.++++.+.   +.+.+..+  ++|++|||.|....+...+++++++|+++.+|......+++...+..++.
T Consensus       203 ~~-~~lg~~~~~~~~~~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  281 (341)
T PRK05396        203 LA-RKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKVIFKGL  281 (341)
T ss_pred             HH-HHhCCcEEecCccccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCcccHHHHhhcce
Confidence            44 78999988877653   33444443  89999999987667889999999999999999765544555556677888


Q ss_pred             EEEEeeccC-HHHHHHHHHHHHhC-CcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          156 IVGGSLIGG-LKETQEMIDFAAKH-NIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       156 ~i~~~~~~~-~~~~~~~~~~~~~~-~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      ++.++.... ...+..+++++.++ .+.+.+ +.++++++++|++.+.++. .+|++++++
T Consensus       282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~-~gk~vv~~~  341 (341)
T PRK05396        282 TIKGIYGREMFETWYKMSALLQSGLDLSPIITHRFPIDDFQKGFEAMRSGQ-SGKVILDWD  341 (341)
T ss_pred             EEEEEEccCccchHHHHHHHHHcCCChhHheEEEEeHHHHHHHHHHHhcCC-CceEEEecC
Confidence            888765322 23456678888888 344445 8999999999999998876 689998764

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.90  E-value=1.3e-22  Score=151.03  Aligned_cols=192  Identities=17%  Similarity=0.185  Sum_probs=160.0

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      ++.+.+.|||..++.++..+.|++|+|-|| |.+|+.+.|+|+.+||+|+..+.++++...+..+||.+..+|+.++..+
T Consensus       133 ~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~  212 (343)
T KOG1196|consen  133 LLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDL  212 (343)
T ss_pred             ccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCChhhhhhhHhccCCccceeccCccCH
Confidence            678899999999999999999999999997 9999999999999999999999999999999889999999999886322


Q ss_pred             H----Hhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC---Cccc---CccccccCCcEEEEeeccCH----
Q 027668          101 Q----AAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK---PLEL---PAFPLLTGEKIVGGSLIGGL----  165 (220)
Q Consensus       101 ~----~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~---~~~~---~~~~~~~~~~~i~~~~~~~~----  165 (220)
                      .    ... +|+|+-||.+|+. .++..+..|+..|+++.+|..+.   ..+.   +....+.|++.+.|+.....    
T Consensus       213 ~~aL~r~~P~GIDiYfeNVGG~-~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~  291 (343)
T KOG1196|consen  213 SAALKRCFPEGIDIYFENVGGK-MLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKY  291 (343)
T ss_pred             HHHHHHhCCCcceEEEeccCcH-HHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhh
Confidence            2    222 3999999999998 68999999999999999997652   1111   12345778899988765432    


Q ss_pred             -HHHHHHHHHHHhCCcceeEEEE-ecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          166 -KETQEMIDFAAKHNIRADIEVI-PADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       166 -~~~~~~~~~~~~~~~~~~i~~~-~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                       +.+..+.+++++|+|+..-+++ .+++.++||.-|.+++..||.++.+..
T Consensus       292 ~k~ld~l~~~ikegKI~y~edi~~Glen~P~A~vglf~GkNvGKqiv~va~  342 (343)
T KOG1196|consen  292 PKFLDFLLPYIKEGKITYVEDIADGLENGPSALVGLFHGKNVGKQLVKVAR  342 (343)
T ss_pred             HHHHHHHHHHHhcCceEEehhHHHHHhccHHHHHHHhccCcccceEEEeec
Confidence             3357788899999998876444 599999999999999999999998864

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.90  E-value=7.4e-22  Score=155.13  Aligned_cols=209  Identities=25%  Similarity=0.332  Sum_probs=166.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|++++..+++.+.+.+.++++++.....+.+|++++|+|+ |++|++++++++.+|+++++++.++++.+
T Consensus        96 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~  175 (320)
T cd05286          96 VVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAE  175 (320)
T ss_pred             EecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            46778899999999999999999999999999887777899999999996 99999999999999999999998888877


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +++|++.+++..+.+   .+....+  ++|.+|+|+++. ....++++++++|+++.+|..... ..++...+..++
T Consensus       176 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  253 (320)
T cd05286         176 LA-RAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGKD-TFEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGS  253 (320)
T ss_pred             HH-HHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCcH-hHHHHHHhhccCcEEEEEecCCCCCCccCHHHHHhcC
Confidence            77 779998888766533   3334443  799999999985 688899999999999999875432 223333333677


Q ss_pred             cEEEEeec----cCH----HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          155 KIVGGSLI----GGL----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~i~~~~~----~~~----~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .++.+...    ...    ..+..+++++.++.+.+.. +.|++++++++++.+..+...+|+++.+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~  320 (320)
T cd05286         254 LFLTRPSLFHYIATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQAHRDLESRKTTGKLLLIP  320 (320)
T ss_pred             cEEEEEehhhhcCCHHHHHHHHHHHHHHHHCCCCcCcccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            77765432    122    2245678888889887655 8999999999999999888778988753

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.90  E-value=9.8e-22  Score=157.78  Aligned_cols=206  Identities=20%  Similarity=0.258  Sum_probs=157.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      +++.+.++++|++++++++++. ..+.++++++ ....+.+|++++|+|+|++|++++++++..|++ ++++++++++.+
T Consensus       143 ~v~~~~~~~~P~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~  220 (364)
T PLN02702        143 VHPADLCFKLPENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLS  220 (364)
T ss_pred             EcchHHeEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            4677889999999999888742 2334477777 445578999999999999999999999999995 666666665555


Q ss_pred             HHHHHcCCcEEecCC--CH---HHHHHh---c-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccc
Q 027668           81 EAVERLGADSFLVSR--DQ---DEMQAA---M-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~--~~---~~~~~~---~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~  151 (220)
                       .++++|++.+++..  +.   +.+.++   . +++|++|||+|....+..++++++++|+++.+|.......++...+.
T Consensus       221 -~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~  299 (364)
T PLN02702        221 -VAKQLGADEIVLVSTNIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAA  299 (364)
T ss_pred             -HHHHhCCCEEEecCcccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCCcccHHHHH
Confidence             44789998776532  11   233322   2 37999999999766789999999999999999975433344455667


Q ss_pred             cCCcEEEEeeccCHHHHHHHHHHHHhCCcce--eE-EEEec--ccHHHHHHHHHcCCcceEEEEE
Q 027668          152 TGEKIVGGSLIGGLKETQEMIDFAAKHNIRA--DI-EVIPA--DYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~i-~~~~~--~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .+++++.++... ...+..++++++++.+.+  .+ ++|++  +++++|++.+.+++..+|+++.
T Consensus       300 ~~~~~i~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        300 AREVDVVGVFRY-RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN  363 (364)
T ss_pred             hCccEEEEeccC-hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence            788999987654 457889999999998753  34 78666  7999999999888777899985

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.89  E-value=1e-21  Score=156.27  Aligned_cols=206  Identities=15%  Similarity=0.174  Sum_probs=157.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      +++++.++++|++++.+.+ ++...+.++++++  .....+|++++|.|+|++|++++|+++.+|++ |+++.+++++.+
T Consensus       124 ~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~  200 (340)
T TIGR00692       124 VVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLE  200 (340)
T ss_pred             EeehHHcEECcCCCChHhh-hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            4667789999999998655 5677788888876  23468999999988899999999999999996 877866655554


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCcc-ccccCC
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF-PLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~-~~~~~~  154 (220)
                       ..+++|++.+++..+.   +.+.+..+  ++|++|||+|....+...+++++++|+++.+|......+++.. .+..++
T Consensus       201 -~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  279 (340)
T TIGR00692       201 -LAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKG  279 (340)
T ss_pred             -HHHHhCCcEEEcccccCHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCCcccchhhhhhhcc
Confidence             4478999888876543   33444443  7999999998766688899999999999999876433333333 455677


Q ss_pred             cEEEEeecc-CHHHHHHHHHHHHhCCcc--eeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          155 KIVGGSLIG-GLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~i~~~~~~-~~~~~~~~~~~~~~~~~~--~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .++.+.... ..+.+.+++++++++.++  +.+ +.+++++++++++.+.+++. +|+++++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~-gkvvv~~  340 (340)
T TIGR00692       280 LTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQT-GKVILSL  340 (340)
T ss_pred             eEEEEEecCCchhhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCC-ceEEEeC
Confidence            777765422 234578899999999987  334 89999999999999987774 8999864

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05281 TDH Threonine dehydrogenase

Probab=99.89  E-value=1.2e-21  Score=156.03  Aligned_cols=206  Identities=18%  Similarity=0.247  Sum_probs=157.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      +++.+.++++|++++.+.+ ++...+.++++++.  ....+|++|+|.|+|.+|++++|+++.+|+ +++++++++++.+
T Consensus       126 ~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~  202 (341)
T cd05281         126 VVPEENLWKNDKDIPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLE  202 (341)
T ss_pred             EechHHcEECcCCCCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            5677899999999998554 56666777777765  235799999999889999999999999999 7888866666654


Q ss_pred             HHHHHcCCcEEecCCCHH--HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCcc-ccccCCc
Q 027668           81 EAVERLGADSFLVSRDQD--EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF-PLLTGEK  155 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~--~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~-~~~~~~~  155 (220)
                      .+ +++|++.+++....+  .+.+..+  ++|++|||+|.......++++++++|+++.+|.......++.. .+..++.
T Consensus       203 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  281 (341)
T cd05281         203 LA-KKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGL  281 (341)
T ss_pred             HH-HHhCcceeeCcccccHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCcccccchhhhccce
Confidence            44 789998887665422  3344443  8999999998766678899999999999999865443333322 2556777


Q ss_pred             EEEEeeccC-HHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          156 IVGGSLIGG-LKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~i~~~~~~~-~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .+.++.... .+.+..+++++.++.+.+  .+ +++++++++++++.+.+++ .+|+++++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~gk~vv~~  341 (341)
T cd05281         282 TVQGITGRKMFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGK-CGKVVLYP  341 (341)
T ss_pred             EEEEEecCCcchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCC-CceEEecC
Confidence            777765322 356788999999998863  34 7899999999999999888 88999864

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.89  E-value=3.8e-22  Score=154.37  Aligned_cols=203  Identities=24%  Similarity=0.328  Sum_probs=155.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++.+ +.+.+||+++.. ..++++++++|+|+|++|++++++++.+|++ |+++++++++.+
T Consensus        59 ~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~~~-~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~  136 (277)
T cd08255          59 VVPANLLVPLPDGLPPERAALT-ALAATALNGVRD-AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRE  136 (277)
T ss_pred             EcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHH
Confidence            4677899999999999999888 789999999864 5689999999999999999999999999997 999988888876


Q ss_pred             HHHHHcC-CcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEE
Q 027668           81 EAVERLG-ADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGG  159 (220)
Q Consensus        81 ~~~~~~g-~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~  159 (220)
                       .++++| .+.+++..+. ..  -.+++|.+|||++........+++++++|+++.+|............+..++.++.+
T Consensus       137 -~~~~~g~~~~~~~~~~~-~~--~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~  212 (277)
T cd08255         137 -LAEALGPADPVAADTAD-EI--GGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRLPIRS  212 (277)
T ss_pred             -HHHHcCCCccccccchh-hh--cCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCccccHHHHHhccCeEEe
Confidence             557888 5555443221 10  113799999998876678889999999999999987654311111223445556665


Q ss_pred             eeccC------------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcC-CcceEEEE
Q 027668          160 SLIGG------------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKA-DVRYRFVI  210 (220)
Q Consensus       160 ~~~~~------------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~-~~~~k~v~  210 (220)
                      .....            .+.++++++++.++.+++.+ +.+++++++++++.+.++ ....|+++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~  277 (277)
T cd08255         213 SQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDPPECLKVVL  277 (277)
T ss_pred             ecccccccccccccccccccHHHHHHHHHcCCccccccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence            54321            24578899999999988765 899999999999999877 23356653

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.89  E-value=9.9e-22  Score=155.61  Aligned_cols=205  Identities=22%  Similarity=0.296  Sum_probs=162.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|++  +.+++.+...+.+||+++.....+++|++++|+|+ |.+|++++++++..|++|+++++++++.+
T Consensus       101 ~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~  178 (329)
T cd08250         101 VVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAE  178 (329)
T ss_pred             EechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHH
Confidence            4677889999997  35677899999999999987777899999999996 99999999999999999999998888777


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-----------ccc
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-----------LEL  145 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-----------~~~  145 (220)
                      .+ +++|++.+++..+.+   .+.... +++|++|||+|.. .+...+++++++|+++.+|.....           ..+
T Consensus       179 ~~-~~~g~~~v~~~~~~~~~~~~~~~~~~~vd~v~~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~  256 (329)
T cd08250         179 FL-KSLGCDRPINYKTEDLGEVLKKEYPKGVDVVYESVGGE-MFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATL  256 (329)
T ss_pred             HH-HHcCCceEEeCCCccHHHHHHHhcCCCCeEEEECCcHH-HHHHHHHHhccCCeEEEEecccCCcccCcccccccccc
Confidence            66 779988887665532   232322 3799999999975 688899999999999999875421           111


Q ss_pred             CccccccCCcEEEEeeccC-----HHHHHHHHHHHHhCCcceeE---EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          146 PAFPLLTGEKIVGGSLIGG-----LKETQEMIDFAAKHNIRADI---EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       146 ~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~i---~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      + ...+.++.++.++....     .+.+..+++++.++.+.+.+   +.++++++++|++.+.+++..+|++++
T Consensus       257 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         257 P-PKLLAKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             c-HHHhhcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence            1 23356788888876532     34467888999999888743   569999999999999988777888863

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.89  E-value=1.7e-21  Score=154.54  Aligned_cols=204  Identities=21%  Similarity=0.260  Sum_probs=161.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++.+ ..+.++++++ ....+++|++|+|+|+|.+|++++++++.+|++ ++++++++++.+
T Consensus       121 ~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~  198 (334)
T cd08234         121 VVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLE  198 (334)
T ss_pred             EecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence            4677889999999999998765 6778888888 455689999999999899999999999999997 888888887776


Q ss_pred             HHHHHcCCcEEecCCCHHHH--HHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccccccCCc
Q 027668           81 EAVERLGADSFLVSRDQDEM--QAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGEK  155 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~--~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~~~~~~~  155 (220)
                      .+ +++|.+.+++..+.+..  +... +++|++|||+|....+...+++++++|+++.+|....  ..+++...+..++.
T Consensus       199 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  277 (334)
T cd08234         199 LA-KKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKEL  277 (334)
T ss_pred             HH-HHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCc
Confidence            66 78898777776543221  2222 3799999999876668889999999999999987543  23444444445778


Q ss_pred             EEEEeeccCHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          156 IVGGSLIGGLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      ++.+... ....++.+++++.++.+.+.  + .++++++++++++.+.+ ...+|+++
T Consensus       278 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~-~~~~k~vi  333 (334)
T cd08234         278 TIIGSFI-NPYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRS-GGALKVVV  333 (334)
T ss_pred             EEEEecc-CHHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhc-CCceEEEe
Confidence            8877754 34568889999999988752  3 78999999999999998 66688875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.89  E-value=2.5e-21  Score=152.97  Aligned_cols=209  Identities=22%  Similarity=0.237  Sum_probs=162.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhH---hccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR---FYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .++.+.++++|+++++++++.+++.+++++.++.   .....+++++++|+|+ |++|++++|+++.+|+++++++.+++
T Consensus       103 ~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~~~~~  182 (324)
T cd08288         103 RVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVASTGRPE  182 (324)
T ss_pred             EEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            4677889999999999999999999999887754   3442236789999997 99999999999999999999998888


Q ss_pred             cHHHHHHHcCCcEEecCCCHH-HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCC
Q 027668           78 KKSEAVERLGADSFLVSRDQD-EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGE  154 (220)
Q Consensus        78 ~~~~~~~~~g~~~v~~~~~~~-~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      +++.+ +++|++.++++.+.. .+..... ++|.+||+++.. .+..++..++.+|+++.+|.... ...++...++.++
T Consensus       183 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~  260 (324)
T cd08288         183 EADYL-RSLGASEIIDRAELSEPGRPLQKERWAGAVDTVGGH-TLANVLAQTRYGGAVAACGLAGGADLPTTVMPFILRG  260 (324)
T ss_pred             HHHHH-HhcCCCEEEEcchhhHhhhhhccCcccEEEECCcHH-HHHHHHHHhcCCCEEEEEEecCCCCCCcchhhhhccc
Confidence            87777 789998888876532 2333333 789999999975 46778888999999999987532 2233444444688


Q ss_pred             cEEEEeecc--C----HHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          155 KIVGGSLIG--G----LKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~i~~~~~~--~----~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .++.+....  .    .+.+..+.+++.++.+.+..+.+++++++++++.+.+++..+|+++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         261 VTLLGIDSVMAPIERRRAAWARLARDLDPALLEALTREIPLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             cEEEEEEeecccchhhHHHHHHHHHHHhcCCccccceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence            888886421  1    234666777888887766458999999999999999888888998763

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.89  E-value=1.9e-21  Score=153.25  Aligned_cols=208  Identities=25%  Similarity=0.350  Sum_probs=165.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++.+.+.+.+||+++.....+.+|++++|+|+ |.+|++++++++.+|++|+++++++++.+
T Consensus       104 ~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  183 (325)
T cd08253         104 VVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAE  183 (325)
T ss_pred             EecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            45667899999999999999999999999999988777899999999996 99999999999999999999999888877


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCc
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEK  155 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      .+ +++|++.+++....+   .+.+...  ++|.+++|+|.. .....+++++++|+++.+|.......++...++.++.
T Consensus       184 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~  261 (325)
T cd08253         184 LV-RQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANV-NLAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEA  261 (325)
T ss_pred             HH-HHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECCchH-HHHHHHHhhCCCCEEEEEeecCCcCCCChhHHHhcCc
Confidence            77 678988887766543   3333332  799999999987 4788899999999999998755333444444456677


Q ss_pred             EEEEeeccC--H----HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          156 IVGGSLIGG--L----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       156 ~i~~~~~~~--~----~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      ++.+...+.  .    +.+..+.+++.++.+.+.. +++++++++++++.+..+...+|++++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~  324 (325)
T cd08253         262 SIRGVLLYTATPEERAAAAEAIAAGLADGALRPVIAREYPLEEAAAAHEAVESGGAIGKVVLD  324 (325)
T ss_pred             eEEeeehhhcCHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence            776654332  1    2245556677788877655 899999999999999988877898875

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.89  E-value=2.4e-21  Score=152.41  Aligned_cols=207  Identities=29%  Similarity=0.341  Sum_probs=166.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++.+...+.++|+++.....+.++++++|+|+ |++|++++++++..|++++++++++++.+
T Consensus        99 ~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~  178 (323)
T cd05276          99 VVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLE  178 (323)
T ss_pred             EcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            45677899999999999999999999999999887777899999999997 99999999999999999999999888777


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      .+ +++|.+.+++....+   .+....  +++|++||++|... ....+++++++|+++.+|.... ...++...++.++
T Consensus       179 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~  256 (323)
T cd05276         179 AC-RALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGGDY-LARNLRALAPDGRLVLIGLLGGAKAELDLAPLLRKR  256 (323)
T ss_pred             HH-HHcCCCEEEeCCchhHHHHHHHHhCCCCeEEEEECCchHH-HHHHHHhhccCCEEEEEecCCCCCCCCchHHHHHhC
Confidence            66 678988887766543   233333  27999999999874 7889999999999999987543 2344444455688


Q ss_pred             cEEEEeeccCH----------HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          155 KIVGGSLIGGL----------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       155 ~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      .++.++.....          ..+.++++++.++.+.+.. +.|++++++++++.+.++...+|+++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         257 LTLTGSTLRSRSLEEKAALAAAFREHVWPLFASGRIRPVIDKVFPLEEAAEAHRRMESNEHIGKIVL  323 (323)
T ss_pred             CeEEEeeccchhhhccHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            88888765432          2246677888888887655 89999999999999988777778763

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.88  E-value=1.1e-20  Score=148.98  Aligned_cols=208  Identities=29%  Similarity=0.336  Sum_probs=166.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++..++++...+.++|+++.....+.++++++|+|+ |++|++++++++.+|++++++.+++++.+
T Consensus        99 ~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  178 (325)
T TIGR02824        99 AVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCA  178 (325)
T ss_pred             EecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            45677899999999999999999999999999877777899999999996 99999999999999999999998887776


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      .+ +++|.+.+++....+   .+....+  ++|.+++|+|.. ....++++++++|+++.+|.... ...++...++.++
T Consensus       179 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  256 (325)
T TIGR02824       179 AC-EALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGS-YLNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKR  256 (325)
T ss_pred             HH-HHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECCchH-HHHHHHHhhccCcEEEEEecCCCCcCCCChHHHHhcC
Confidence            55 788987777665533   2333333  799999999986 57889999999999999987542 2244444555788


Q ss_pred             cEEEEeeccCH----------HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          155 KIVGGSLIGGL----------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~i~~~~~~~~----------~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.+......          ..+..+++++.++.+.+.. +.+++++++++++.+.++...+|++++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  324 (325)
T TIGR02824       257 LTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDAAQAHALMESGDHIGKIVLT  324 (325)
T ss_pred             CEEEEEehhhcchhhhHHHHHHHHHHHHHHHHCCcccCccccEEeHHHHHHHHHHHHhCCCcceEEEe
Confidence            99888764331          2245567888888887655 889999999999999888777888875

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>smart00829 PKS_ER Enoylreductase

Probab=99.87  E-value=5.7e-21  Score=147.97  Aligned_cols=205  Identities=24%  Similarity=0.347  Sum_probs=160.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++++.+.+.++|+++.....+.+|++|+|+|+ |.+|++++++++.+|++|+++++++++.+
T Consensus        64 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  143 (288)
T smart00829       64 RTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRD  143 (288)
T ss_pred             EccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            46778899999999999999999999999999866667899999999995 99999999999999999999998888877


Q ss_pred             HHHHHcCC--cEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccccc
Q 027668           81 EAVERLGA--DSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~--~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|+  +.+++..+.+   .+....+  ++|.++|++|.. ....++++++++|+++.+|....  ...++... +
T Consensus       144 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~  220 (288)
T smart00829      144 FL-RELGIPDDHIFSSRDLSFADEILRATGGRGVDVVLNSLAGE-FLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAP-F  220 (288)
T ss_pred             HH-HHcCCChhheeeCCCccHHHHHHHHhCCCCcEEEEeCCCHH-HHHHHHHhccCCcEEEEEcCcCCccccccchhh-h
Confidence            77 78997  6677665533   2333332  799999999864 68889999999999999986532  22233322 3


Q ss_pred             cCCcEEEEeecc----C----HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEE
Q 027668          152 TGEKIVGGSLIG----G----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFV  209 (220)
Q Consensus       152 ~~~~~i~~~~~~----~----~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v  209 (220)
                      .++.++.+....    .    ...+..+++++.++.+.+.. +.|++++++++++.+..+...+|++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv  287 (288)
T smart00829      221 RRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQQGKHIGKVV  287 (288)
T ss_pred             cCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHhcCCCcceEe
Confidence            455665554321    1    23466788888889887644 8899999999999998877667776

Enoylreductase in Polyketide synthases.

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.87  E-value=7.6e-21  Score=149.67  Aligned_cols=207  Identities=29%  Similarity=0.405  Sum_probs=165.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|++++..+++.+...+.+||+++.....+.++++++|+|+ |++|++++++++..|++|++++.++++.+
T Consensus        99 ~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  178 (323)
T cd08241          99 VVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLA  178 (323)
T ss_pred             EcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHH
Confidence            35677899999999999998899999999999886677899999999997 99999999999999999999999888777


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcc-cCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLE-LPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~-~~~~~~~~~~  154 (220)
                      .+ +++|++.+++..+.+   .+....+  ++|.+++|+|.. ....++++++++|+++.+|....... ++....+.++
T Consensus       179 ~~-~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g~~-~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~  256 (323)
T cd08241         179 LA-RALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGD-VFEASLRSLAWGGRLLVIGFASGEIPQIPANLLLLKN  256 (323)
T ss_pred             HH-HHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECccHH-HHHHHHHhhccCCEEEEEccCCCCcCcCCHHHHhhcC
Confidence            66 678887777766533   3334433  799999999985 57889999999999999987543322 3333345678


Q ss_pred             cEEEEeeccC---------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          155 KIVGGSLIGG---------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       155 ~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      .++.+.....         ...+..+++++.++.+.+.. +.|++++++++++.+..+...+|+++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv  322 (323)
T cd08241         257 ISVVGVYWGAYARREPELLRANLAELFDLLAEGKIRPHVSAVFPLEQAAEALRALADRKATGKVVL  322 (323)
T ss_pred             cEEEEEecccccchhHHHHHHHHHHHHHHHHCCCcccccceEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence            8888765432         24567788899999887655 89999999999999987776678875

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.87  E-value=1.1e-20  Score=149.00  Aligned_cols=205  Identities=26%  Similarity=0.331  Sum_probs=163.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++..++.++..+.+||+++.....+.+|++++|+|+ |++|++++++++.+|++|++++++ ++.+
T Consensus       104 ~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~-~~~~  182 (326)
T cd08272         104 VVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS-EKAA  182 (326)
T ss_pred             EecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech-HHHH
Confidence            45678899999999999999999999999999877777899999999995 999999999999999999999887 7666


Q ss_pred             HHHHHcCCcEEecCCCH--HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcE
Q 027668           81 EAVERLGADSFLVSRDQ--DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKI  156 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~--~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      .+ +++|.+.+++....  +.+.+..+  ++|.++||+|.. .....+++++++|+++.+|... ..  +......++.+
T Consensus       183 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~~~~~-~~--~~~~~~~~~~~  257 (326)
T cd08272         183 FA-RSLGADPIIYYRETVVEYVAEHTGGRGFDVVFDTVGGE-TLDASFEAVALYGRVVSILGGA-TH--DLAPLSFRNAT  257 (326)
T ss_pred             HH-HHcCCCEEEecchhHHHHHHHhcCCCCCcEEEECCChH-HHHHHHHHhccCCEEEEEecCC-cc--chhhHhhhcce
Confidence            66 77998877776543  22333333  799999999986 5788999999999999988654 22  22222356777


Q ss_pred             EEEeeccC-----------HHHHHHHHHHHHhCCcceeE--EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          157 VGGSLIGG-----------LKETQEMIDFAAKHNIRADI--EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       157 i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i--~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +.+.....           ...+..+++++.++.+.+.+  +.|++++++++++.+.+++..+|+++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         258 YSGVFTLLPLLTGEGRAHHGEILREAARLVERGQLRPLLDPRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             EEEEEcccccccccchhhHHHHHHHHHHHHHCCCcccccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence            76654322           34577888899999887653  8899999999999998877778988763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.87  E-value=1.3e-20  Score=148.32  Aligned_cols=206  Identities=27%  Similarity=0.319  Sum_probs=153.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++.+.+.+.+||+++.....+.+|++++|+|+ |++|++++++++.+|++|++++.+ ++.+
T Consensus       103 ~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~  181 (319)
T cd08267         103 VAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAE  181 (319)
T ss_pred             EechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHH
Confidence            45678899999999999999999999999999988887899999999997 999999999999999999988865 5555


Q ss_pred             HHHHHcCCcEEecCCCHHHHHHhc--CCccEEEEcCCCc-ccHHHHHhccccCCEEEEecCCCCCcccC-----cccc-c
Q 027668           81 EAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLGAPEKPLELP-----AFPL-L  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~-~~~~~~~~~l~~~g~iv~~g~~~~~~~~~-----~~~~-~  151 (220)
                      .+ +++|.+.+++....+......  +++|++++|+|.. ......+..++++|+++.+|.........     .... .
T Consensus       182 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~  260 (319)
T cd08267         182 LV-RSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGG  260 (319)
T ss_pred             HH-HHcCCCEeecCCCCCcchhccCCCCCcEEEECCCchHHHHHHhhhccCCCCEEEEeccccccccccccccchhhccc
Confidence            55 789988777765433222222  2799999999853 12334444599999999998764321111     1111 1


Q ss_pred             cCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          152 TGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      .+...... .....+.+..+++++.++.+.+.+ +.|++++++++++.+.++...+|+++
T Consensus       261 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~~~~~~~~~~vvv  319 (319)
T cd08267         261 GRRLKFFL-AKPNAEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRLKSGRARGKVVI  319 (319)
T ss_pred             cceEEEEE-ecCCHHHHHHHHHHHHCCCeeeeeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence            12222222 222367789999999999988755 89999999999999988776677763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.87  E-value=4.6e-21  Score=150.38  Aligned_cols=175  Identities=23%  Similarity=0.277  Sum_probs=141.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCC-cccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS-PSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~-~~~~~   80 (220)
                      +++.+.++++|+++++++++ +...+.++|+++.....++++++|+|.|+|.+|++++++++.+|++|++++.+ ++...
T Consensus       125 ~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~  203 (306)
T cd08258         125 LVPEESLHELPENLSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRL  203 (306)
T ss_pred             EcchHHeEECcCCCCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHH
Confidence            46778899999999999886 77788899999877777899999999888999999999999999998877433 33233


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      .+++++|++.+ ++...+   .+.+..+  ++|.+|||+|....+...+++++++|+++.+|.... ...++...++.++
T Consensus       204 ~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  282 (306)
T cd08258         204 DVAKELGADAV-NGGEEDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKE  282 (306)
T ss_pred             HHHHHhCCccc-CCCcCCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcC
Confidence            45578998777 665432   3333333  799999999876568889999999999999998652 3455666677899


Q ss_pred             cEEEEeeccCHHHHHHHHHHHHhC
Q 027668          155 KIVGGSLIGGLKETQEMIDFAAKH  178 (220)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~  178 (220)
                      +++.|+..+++++++++++++++|
T Consensus       283 ~~i~g~~~~~~~~~~~~~~~~~~~  306 (306)
T cd08258         283 LSVIGSRSSTPASWETALRLLASG  306 (306)
T ss_pred             cEEEEEecCchHhHHHHHHHHhcC
Confidence            999999999999999999999875

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.87  E-value=2.7e-20  Score=148.62  Aligned_cols=206  Identities=29%  Similarity=0.348  Sum_probs=156.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCC----CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKP----GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~----~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      .++++.++++|++++++.++.+++.+.++|+++.....+.+    |++++|+|+ |++|++++++++.+|++|+++.++ 
T Consensus       118 ~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-  196 (350)
T cd08248         118 VVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-  196 (350)
T ss_pred             EecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-
Confidence            46778999999999999999999999999999877776654    999999996 999999999999999998888765 


Q ss_pred             ccHHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC--c--ccC--cc
Q 027668           77 SKKSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--L--ELP--AF  148 (220)
Q Consensus        77 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~--~--~~~--~~  148 (220)
                      ++. .+++++|.+.+++..+.+...++.  +++|++|||+|.. ....++++++++|+++.+|.....  .  ...  ..
T Consensus       197 ~~~-~~~~~~g~~~~~~~~~~~~~~~l~~~~~vd~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~  274 (350)
T cd08248         197 DAI-PLVKSLGADDVIDYNNEDFEEELTERGKFDVILDTVGGD-TEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGML  274 (350)
T ss_pred             chH-HHHHHhCCceEEECCChhHHHHHHhcCCCCEEEECCChH-HHHHHHHHhccCCEEEEecCCcccccccccccchhh
Confidence            444 455789988888776644444433  3799999999987 688999999999999999854311  0  110  00


Q ss_pred             ----cccc-------CCcEEE-EeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          149 ----PLLT-------GEKIVG-GSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       149 ----~~~~-------~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                          .+..       +...+. +........+..+++++.++.+.+.+ +.|++++++++++.+.+++..+|+++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~  349 (350)
T cd08248         275 KSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVEDGKIKPVIDKVFPFEEVPEAYEKVESGHARGKTVI  349 (350)
T ss_pred             hhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhCCCEecccceeecHHHHHHHHHHHhcCCCceEEEe
Confidence                0000       111111 11122356789999999999987666 89999999999999988776678875

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08251 polyketide_synthase polyketide synthase

Probab=99.87  E-value=1.7e-20  Score=146.55  Aligned_cols=205  Identities=20%  Similarity=0.268  Sum_probs=158.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      +++.+.++++|+++++++++.++..+.+||++++ ...+++|++++|+|+ |.+|++++++++.+|++++++++++++.+
T Consensus        81 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~-~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~  159 (303)
T cd08251          81 TVPEDQVVRKPASLSFEEACALPVVFLTVIDAFA-RAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLE  159 (303)
T ss_pred             EccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHH-hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            5677889999999999999999999999999986 456899999999975 99999999999999999999998888777


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccccccC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~~~~~  153 (220)
                      .+ +++|.+.+++....+   .+....+  ++|.++|+++.. .....+++++++|+++.+|....  ...++... +.+
T Consensus       160 ~~-~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~-~~~  236 (303)
T cd08251         160 YL-KQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSGE-AIQKGLNCLAPGGRYVEIAMTALKSAPSVDLSV-LSN  236 (303)
T ss_pred             HH-HHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcHH-HHHHHHHHhccCcEEEEEeccCCCccCccChhH-hhc
Confidence            77 789998888766533   3334443  799999999875 58889999999999999876532  12222222 222


Q ss_pred             CcEEEEeec-----cC----HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          154 EKIVGGSLI-----GG----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       154 ~~~i~~~~~-----~~----~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      +..+.....     ..    .+.+.++++++.++.+++.. +.+++++++++++.+.+++..+|+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         237 NQSFHSVDLRKLLLLDPEFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             CceEEEEehHHhhhhCHHHHHHHHHHHHHHHHCCCccCCCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            333322211     11    13467788899999888655 89999999999999998877778763

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.86  E-value=2e-20  Score=146.42  Aligned_cols=201  Identities=26%  Similarity=0.356  Sum_probs=158.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++...++++|+++++..++.+.+.+.++|+++.....+.++++++|+|+ |.+|++++++++..|+++++++.++ +.+
T Consensus       104 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~  182 (309)
T cd05289         104 VVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NAD  182 (309)
T ss_pred             EecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHH
Confidence            45677889999999999999999999999999988877899999999997 9999999999999999999888776 555


Q ss_pred             HHHHHcCCcEEecCCCHHHHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEE
Q 027668           81 EAVERLGADSFLVSRDQDEMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGG  159 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~  159 (220)
                      .+ +++|.+.+++....+..+... +++|.+|+|+|.. ....++++++++|+++.+|.......    ....++.++..
T Consensus       183 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~----~~~~~~~~~~~  256 (309)
T cd05289         183 FL-RSLGADEVIDYTKGDFERAAAPGGVDAVLDTVGGE-TLARSLALVKPGGRLVSIAGPPPAEQ----AAKRRGVRAGF  256 (309)
T ss_pred             HH-HHcCCCEEEeCCCCchhhccCCCCceEEEECCchH-HHHHHHHHHhcCcEEEEEcCCCcchh----hhhhccceEEE
Confidence            55 788987777665533222112 2799999999987 68889999999999999987543211    22234455444


Q ss_pred             eeccC-HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEE
Q 027668          160 SLIGG-LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFV  209 (220)
Q Consensus       160 ~~~~~-~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v  209 (220)
                      ..... ...+..+++++.++.+.+.+ +.|++++++++++.+..++..+|++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv  308 (309)
T cd05289         257 VFVEPDGEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERLESGHARGKVV  308 (309)
T ss_pred             EEecccHHHHHHHHHHHHCCCEEEeeccEEcHHHHHHHHHHHHhCCCCCcEe
Confidence            43221 56788999999999887655 8999999999999998877666766

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.86  E-value=4.9e-20  Score=145.98  Aligned_cols=205  Identities=23%  Similarity=0.276  Sum_probs=155.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++++++++.+.+.+||+++.....+.+|++++|+|+ |++|++++++++..|++|++++. +++.+
T Consensus        99 ~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~~~~~-~~~~~  177 (331)
T cd08273          99 NLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTAS-ERNHA  177 (331)
T ss_pred             EechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC-HHHHH
Confidence            45677899999999999999999999999999988777899999999997 99999999999999999998887 65655


Q ss_pred             HHHHHcCCcEEecCCCHHHHH-Hhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCc----ccCc-------
Q 027668           81 EAVERLGADSFLVSRDQDEMQ-AAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL----ELPA-------  147 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~-~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~----~~~~-------  147 (220)
                      .+ +++|+..+ +....+... ... +++|.++||+|... ...++++++.+|+++.+|......    ++++       
T Consensus       178 ~~-~~~g~~~~-~~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~  254 (331)
T cd08273         178 AL-RELGATPI-DYRTKDWLPAMLTPGGVDVVFDGVGGES-YEESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSLLAR  254 (331)
T ss_pred             HH-HHcCCeEE-cCCCcchhhhhccCCCceEEEECCchHH-HHHHHHHhcCCCEEEEEccCCCCCCccccccchhhhhhh
Confidence            55 77886543 333322211 222 37999999999875 888999999999999998764321    1111       


Q ss_pred             -----cccccCCcEEEEeecc-------CHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          148 -----FPLLTGEKIVGGSLIG-------GLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       148 -----~~~~~~~~~i~~~~~~-------~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                           ...+.+..+..+....       ..+.+..++++++++.+.+.+ +.+++++++++++.+.+++..+|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         255 LAKLKLLPTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIRPKIAKRLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             hhhhcceeccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence                 0112223333222211       135678889999999988765 89999999999999988877788875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.86  E-value=4e-20  Score=143.37  Aligned_cols=206  Identities=21%  Similarity=0.283  Sum_probs=160.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++.+.+.+.++|.++.....+++|++++|+|+ |.+|++++++++.+|++++++++++++.+
T Consensus        68 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~  147 (293)
T cd05195          68 RVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSEEKRE  147 (293)
T ss_pred             EechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            46778899999999999999999999999999877777899999999985 99999999999999999999999888776


Q ss_pred             HHHHHcC--CcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC--cccCccccc
Q 027668           81 EAVERLG--ADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g--~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +..+  ++.+++..+.+   .+.+...  ++|.++||+|.. .+..++++++++|+++.+|.....  ..++... +
T Consensus       148 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~  224 (293)
T cd05195         148 FL-RELGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGE-LLRASWRCLAPFGRFVEIGKRDILSNSKLGMRP-F  224 (293)
T ss_pred             HH-HHhCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCCCch-HHHHHHHhcccCceEEEeeccccccCCccchhh-h
Confidence            66 4566  66777765533   3334432  799999999987 689999999999999999875432  1222222 3


Q ss_pred             cCCcEEEEeecc-----C----HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          152 TGEKIVGGSLIG-----G----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       152 ~~~~~i~~~~~~-----~----~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                      .++.++......     .    ...+..+++++.++.+.+.. +.+.+++++++++.+..++..+|+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         225 LRNVSFSSVDLDQLARERPELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             ccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCCcccCCCeeechhhHHHHHHHHhcCCCCceecC
Confidence            345555543321     1    23467788899999988665 78999999999999998877677763

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.86  E-value=7.6e-20  Score=144.35  Aligned_cols=208  Identities=23%  Similarity=0.306  Sum_probs=163.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|+++++.+++.+.+.+.++|+++.....+.++++++|+|+ |.+|++++++++..|+++++++.++++.+
T Consensus       104 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~  183 (328)
T cd08268         104 LVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRD  183 (328)
T ss_pred             EechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence            46778899999999999999999999999999887777889999999997 99999999999999999999999888777


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +++|.+.+++....+   .+.+...  ++|++++++|.. ....++++++++|+++.+|..... ..++....+.++
T Consensus       184 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  261 (328)
T cd08268         184 AL-LALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGP-QFAKLADALAPGGTLVVYGALSGEPTPFPLKAALKKS  261 (328)
T ss_pred             HH-HHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCchH-hHHHHHHhhccCCEEEEEEeCCCCCCCCchHHHhhcC
Confidence            76 678887777765432   2333333  799999999985 578899999999999999865432 233333346678


Q ss_pred             cEEEEeeccC----HHH----HHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          155 KIVGGSLIGG----LKE----TQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       155 ~~i~~~~~~~----~~~----~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .++.+.....    ...    ++.+.+++.++.+.+.. ..|++++++++++.+..++..+|++++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~  327 (328)
T cd08268         262 LTFRGYSLDEITLDPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVEAHRYLESGQQIGKIVVT  327 (328)
T ss_pred             CEEEEEecccccCCHHHHHHHHHHHHHHHHCCCCcCCcccEEcHHHHHHHHHHHHcCCCCceEEEe
Confidence            8877765432    223    34445566677777655 889999999999999888777898875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.86  E-value=7.2e-20  Score=146.36  Aligned_cols=203  Identities=23%  Similarity=0.232  Sum_probs=150.3

Q ss_pred             ceeeCCCCCCcccccccchhhhhhhhhhHhcc-CCCCCCEEEEEcC-chHHHHHHHHHHHCC-C-eEEEEeCCcccHHHH
Q 027668            7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYG-LDKPGMHVGVVGL-GGLGHVAVKFAKAMG-V-KVTVISTSPSKKSEA   82 (220)
Q Consensus         7 ~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~vlI~G~-g~~G~~~~~~~~~~g-~-~v~~~~~~~~~~~~~   82 (220)
                      .++++|+++++.+++.++..+.|||+++.... .+++|++++|+|+ |.+|++++++++..| . .++++. ++++.+.+
T Consensus       115 ~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~  193 (352)
T cd08247         115 SITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELN  193 (352)
T ss_pred             eeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHH
Confidence            68999999999999999999999999998876 6899999999997 799999999999874 4 566655 44555544


Q ss_pred             HHHcCCcEEecCCCHH---H----HHHhc--CCccEEEEcCCCcccHHHHHhccc---cCCEEEEecCCC-CCcc-----
Q 027668           83 VERLGADSFLVSRDQD---E----MQAAM--GTMDGIIDTVSAVHPLMPLIGLLK---SQGKLVLLGAPE-KPLE-----  144 (220)
Q Consensus        83 ~~~~g~~~v~~~~~~~---~----~~~~~--~~~d~vid~~g~~~~~~~~~~~l~---~~g~iv~~g~~~-~~~~-----  144 (220)
                       +++|++.+++..+.+   .    ++..+  +++|++|||+|.......++++++   ++|+++.++... ....     
T Consensus       194 -~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~  272 (352)
T cd08247         194 -KKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFN  272 (352)
T ss_pred             -HHhCCCEEEecCCCcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhh
Confidence             789998888765433   2    22333  389999999998556788899999   999999764322 1110     


Q ss_pred             ------cCccc----cccCCcEEEEeec-cCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          145 ------LPAFP----LLTGEKIVGGSLI-GGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       145 ------~~~~~----~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                            .....    ...+...+..... .....+..+++++.++.+.+.. ++++++++++|++.+.+++..+|++++
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvi~  351 (352)
T cd08247         273 SWDNPSANARKLFGSLGLWSYNYQFFLLDPNADWIEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGKVVIK  351 (352)
T ss_pred             hccccchhhhhhhhhhcCCCcceEEEEecCCHHHHHHHHHHHhCCCeEeeeccEecHHHHHHHHHHHHcCCCCCcEEEe
Confidence                  00011    1122223322211 1124578889999999988765 899999999999999988877899875

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.85  E-value=3.5e-20  Score=142.55  Aligned_cols=172  Identities=33%  Similarity=0.435  Sum_probs=141.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      +++.+.++++|+++++++++.++..+.+||+++.....+.++++|+|+|+|++|++++++++..|.+|+++++++++.+.
T Consensus        94 ~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~  173 (271)
T cd05188          94 VVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLEL  173 (271)
T ss_pred             EechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence            46778999999999999999999999999999988887799999999998669999999999999999999998877766


Q ss_pred             HHHHcCCcEEecCCCHHHHHH--hc--CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccC-ccccccCCcE
Q 027668           82 AVERLGADSFLVSRDQDEMQA--AM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELP-AFPLLTGEKI  156 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~~~~~--~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~-~~~~~~~~~~  156 (220)
                      + +++|.+.+++..+.+....  ..  +++|++|++++.......++++++++|+++.+|......... ....+.++++
T Consensus       174 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~  252 (271)
T cd05188         174 A-KELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELT  252 (271)
T ss_pred             H-HHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceE
Confidence            6 6788887777665433222  22  389999999998446888999999999999998765432222 3455778999


Q ss_pred             EEEeeccCHHHHHHHHHH
Q 027668          157 VGGSLIGGLKETQEMIDF  174 (220)
Q Consensus       157 i~~~~~~~~~~~~~~~~~  174 (220)
                      +.++..+...++++++++
T Consensus       253 ~~~~~~~~~~~~~~~~~~  270 (271)
T cd05188         253 IIGSTGGTREDFEEALDL  270 (271)
T ss_pred             EEEeecCCHHHHHHHHhh
Confidence            999998888888888775

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.85  E-value=1.4e-19  Score=142.87  Aligned_cols=207  Identities=26%  Similarity=0.388  Sum_probs=157.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .++.+.++++|++++..+++.+.+.+.++++++.....+.+|++++|+|+ |.+|++++++++..|++++++. ++++.+
T Consensus       101 ~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~~~~-~~~~~~  179 (325)
T cd08271         101 VVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTC-SKRNFE  179 (325)
T ss_pred             EeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEE-cHHHHH
Confidence            45678899999999999999999999999999988877899999999997 8999999999999999988876 555655


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCc--cccccC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA--FPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~--~~~~~~  153 (220)
                      .+ +++|++.+++....+   .+....+  ++|.+++|++... ....+++++++|+++.++..........  .....+
T Consensus       180 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~  257 (325)
T cd08271         180 YV-KSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGET-AAALAPTLAFNGHLVCIQGRPDASPDPPFTRALSVH  257 (325)
T ss_pred             HH-HHcCCcEEecCCCccHHHHHHHHcCCCCCcEEEECCCcHh-HHHHHHhhccCCEEEEEcCCCCCcchhHHhhcceEE
Confidence            55 778988888766532   3333333  7999999999874 6678999999999999875432211111  112223


Q ss_pred             CcEEEEeeccC--------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          154 EKIVGGSLIGG--------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       154 ~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      +..+.......        .+.+.++++++.++.+.+.. +.++++++.++++.+.++...+|++++
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~  324 (325)
T cd08271         258 EVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIEVLPFEQLPEALRALKDRHTRGKIVVT  324 (325)
T ss_pred             EEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeeccceEEcHHHHHHHHHHHHcCCccceEEEE
Confidence            33333332211        13356788889899887654 889999999999999988777898875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.83  E-value=6.5e-19  Score=139.73  Aligned_cols=208  Identities=25%  Similarity=0.342  Sum_probs=157.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKK   79 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~   79 (220)
                      .++.+.++++|+++++.+++.+.+.+.++|+++.....+++|++|+|+|+ |.+|++++++++.+ ..+.++.. .+++.
T Consensus        98 ~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~-~~~~~~~~~~~~~~  176 (337)
T cd08275          98 NVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTV-PNVTVVGTASASKH  176 (337)
T ss_pred             EecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHc-cCcEEEEeCCHHHH
Confidence            35677899999999999999999999999999887777899999999997 99999999999998 32233332 23355


Q ss_pred             HHHHHHcCCcEEecCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC----c--------
Q 027668           80 SEAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP----L--------  143 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~----~--------  143 (220)
                      +.+ +.+|.+.+++..+.   +.+....+ ++|+++||+|+. ....++++++++|+++.+|.....    .        
T Consensus       177 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~  254 (337)
T cd08275         177 EAL-KENGVTHVIDYRTQDYVEEVKKISPEGVDIVLDALGGE-DTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKK  254 (337)
T ss_pred             HHH-HHcCCcEEeeCCCCcHHHHHHHHhCCCceEEEECCcHH-HHHHHHHhhccCcEEEEEeecCCcCcccccccccccc
Confidence            545 77898878776543   33433333 799999999986 578899999999999999865421    1        


Q ss_pred             -----ccCccccccCCcEEEEeeccC--------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEE
Q 027668          144 -----ELPAFPLLTGEKIVGGSLIGG--------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFV  209 (220)
Q Consensus       144 -----~~~~~~~~~~~~~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v  209 (220)
                           .+.....+.++.++.++....        ...+..+++++.++.+.+.. +.|++++++++++.+.+++..+|++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvv  334 (337)
T cd08275         255 WWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQSRKNIGKVV  334 (337)
T ss_pred             cccccccCHHHHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCCceeeEEcHHHHHHHHHHHHcCCCcceEE
Confidence                 111123456777877765321        12366788888899887665 8999999999999999887778998


Q ss_pred             EEe
Q 027668          210 IDV  212 (220)
Q Consensus       210 ~~~  212 (220)
                      +++
T Consensus       335 ~~~  337 (337)
T cd08275         335 LTP  337 (337)
T ss_pred             EeC
Confidence            764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.83  E-value=6.3e-20  Score=126.18  Aligned_cols=124  Identities=31%  Similarity=0.487  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhcc
Q 027668           53 GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLL  127 (220)
Q Consensus        53 ~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l  127 (220)
                      ++|++++|+|+.+|++|+++++++++++.+ +++|++.++++++.   +.+++.++  ++|+||||+|....++.+++++
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~-~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l   79 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELA-KELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLL   79 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHH-HHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHH-HhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHHHHh
Confidence            589999999999999999999998887666 78999999988775   46666665  6999999999777899999999


Q ss_pred             ccCCEEEEecCCC-CCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHh
Q 027668          128 KSQGKLVLLGAPE-KPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAK  177 (220)
Q Consensus       128 ~~~g~iv~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  177 (220)
                      +++|+++.+|... ...+++...++.+++++.|+..+++++++++++++++
T Consensus        80 ~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~la~  130 (130)
T PF00107_consen   80 RPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQEALQLLAQ  130 (130)
T ss_dssp             EEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHHHHH-
T ss_pred             ccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHHHhcC
Confidence            9999999999988 5678888999999999999999999999999998864

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.71  E-value=2e-16  Score=126.63  Aligned_cols=175  Identities=15%  Similarity=0.081  Sum_probs=136.2

Q ss_pred             hhhhhHhc-cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCcc
Q 027668           30 VYSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        30 a~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  108 (220)
                      .+.++.+. +...+|++|+|+|+|++|+.+++.++.+|++|++++.++.+.+.+ +.+|+..+.       ..+...++|
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A-~~~G~~~~~-------~~e~v~~aD  259 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQA-AMEGYEVMT-------MEEAVKEGD  259 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHH-HhcCCEEcc-------HHHHHcCCC
Confidence            34555443 334689999999999999999999999999999999888887666 678885431       112335789


Q ss_pred             EEEEcCCCcccHHHH-HhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHH-HHH--HHHHHHHhCCc-cee
Q 027668          109 GIIDTVSAVHPLMPL-IGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLK-ETQ--EMIDFAAKHNI-RAD  183 (220)
Q Consensus       109 ~vid~~g~~~~~~~~-~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~--~~~~~~~~~~~-~~~  183 (220)
                      +||+|+|....+... +..++++|.++.+|..  ..+++...+..+++++.++..+... .|+  ..+.++++|++ +..
T Consensus       260 VVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--~~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvnl~  337 (413)
T cd00401         260 IFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--DVEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLVNLG  337 (413)
T ss_pred             EEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--CCccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCCCCc
Confidence            999999998777765 9999999999999964  4567777788899999998776533 466  78999999988 432


Q ss_pred             --E-EE-----Eecc-cHHHHHHHHHcCCc-ceEEEEEeCC
Q 027668          184 --I-EV-----IPAD-YVNTAMERLAKADV-RYRFVIDVAN  214 (220)
Q Consensus       184 --i-~~-----~~~~-~i~~a~~~~~~~~~-~~k~v~~~~~  214 (220)
                        + |.     ++|+ |+.+++..+.++.. ..|+++.+.+
T Consensus       338 ~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~~  378 (413)
T cd00401         338 CATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPKK  378 (413)
T ss_pred             ccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCHH
Confidence              3 55     8899 99999999987654 3577776644

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.64  E-value=2.8e-14  Score=117.16  Aligned_cols=142  Identities=20%  Similarity=0.205  Sum_probs=108.7

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCH-------------H---HHHH
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQ-------------D---EMQA  102 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~-------------~---~~~~  102 (220)
                      ..++++|+|+|+|++|+++++.|+.+|++|++++.++++++.+ +++|++.+ ++..+.             +   ...+
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~a-eslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQV-ESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            3689999999999999999999999999999999999988777 78999844 544321             1   1111


Q ss_pred             -hc---CCccEEEEcCCCcc-----c-HHHHHhccccCCEEEEecCCC-CC--cccCcccccc-CCcEEEEeeccCHHHH
Q 027668          103 -AM---GTMDGIIDTVSAVH-----P-LMPLIGLLKSQGKLVLLGAPE-KP--LELPAFPLLT-GEKIVGGSLIGGLKET  168 (220)
Q Consensus       103 -~~---~~~d~vid~~g~~~-----~-~~~~~~~l~~~g~iv~~g~~~-~~--~~~~~~~~~~-~~~~i~~~~~~~~~~~  168 (220)
                       +.   +++|++|+|+|.+.     . .+.+++.++++|+++.+|... ++  .+.+..+++. +++++.|......+..
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~p  320 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRLP  320 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhHH
Confidence             12   47999999999743     4 388999999999999999853 43  4444556665 8999999876554434


Q ss_pred             HHHHHHHHhCCcce
Q 027668          169 QEMIDFAAKHNIRA  182 (220)
Q Consensus       169 ~~~~~~~~~~~~~~  182 (220)
                      .+..++++++.++.
T Consensus       321 ~~As~lla~~~i~l  334 (509)
T PRK09424        321 TQSSQLYGTNLVNL  334 (509)
T ss_pred             HHHHHHHHhCCccH
Confidence            46899999988754

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.63  E-value=4.2e-16  Score=106.66  Aligned_cols=117  Identities=30%  Similarity=0.420  Sum_probs=77.9

Q ss_pred             cCCcEEecCCCHHHHHHhcCCccEEEEcCC--CcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeecc
Q 027668           86 LGADSFLVSRDQDEMQAAMGTMDGIIDTVS--AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIG  163 (220)
Q Consensus        86 ~g~~~v~~~~~~~~~~~~~~~~d~vid~~g--~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~  163 (220)
                      +|++.++|++..+.  ...+++|+||||+|  ....+..++++| ++|+++.++.     +........+...+......
T Consensus         1 LGAd~vidy~~~~~--~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-----~~~~~~~~~~~~~~~~~~~~   72 (127)
T PF13602_consen    1 LGADEVIDYRDTDF--AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-----DLPSFARRLKGRSIRYSFLF   72 (127)
T ss_dssp             CT-SEEEETTCSHH--HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-----HHHHHHHHHHCHHCEEECCC
T ss_pred             CCcCEEecCCCccc--cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-----cccchhhhhcccceEEEEEE
Confidence            68999999986555  22359999999999  544446677788 9999999884     11111111122222332222


Q ss_pred             -------CHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEE
Q 027668          164 -------GLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI  210 (220)
Q Consensus       164 -------~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~  210 (220)
                             ..+.++++.+++++|.++|.+ ++|+++++.+|++.+++++..||+|+
T Consensus        73 ~~~~~~~~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   73 SVDPNAIRAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             -H--HHHHHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             ecCCCchHHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence                   234599999999999999999 79999999999999999999999986

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=99.09  E-value=7.6e-09  Score=85.31  Aligned_cols=121  Identities=23%  Similarity=0.244  Sum_probs=85.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCC-------------HHH-------
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRD-------------QDE-------   99 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~-------------~~~-------   99 (220)
                      .++++|+|+|+|.+|+++++.++.+|++|++++.++++++.+ +++|++.+ ++..+             .+.       
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a-~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV-QSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            467899999999999999999999999999999999887766 67998753 22211             011       


Q ss_pred             HHHhcCCccEEEEcC---CCcc---cHHHHHhccccCCEEEEecCCCC-CcccC--ccccc-cCCcEEEEeec
Q 027668          100 MQAAMGTMDGIIDTV---SAVH---PLMPLIGLLKSQGKLVLLGAPEK-PLELP--AFPLL-TGEKIVGGSLI  162 (220)
Q Consensus       100 ~~~~~~~~d~vid~~---g~~~---~~~~~~~~l~~~g~iv~~g~~~~-~~~~~--~~~~~-~~~~~i~~~~~  162 (220)
                      ..+...++|++|+|+   |.+.   ..+..++.+++|+.++.++...+ ++...  ...+. .+++++.+...
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~n  313 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYTD  313 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEEEeeCC
Confidence            122234899999999   6543   45678999999999998887643 32222  22222 24577777644

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.03  E-value=5.2e-09  Score=84.63  Aligned_cols=106  Identities=17%  Similarity=0.189  Sum_probs=81.9

Q ss_pred             hhhhhhhHhccCC-CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCC
Q 027668           28 ITVYSPLRFYGLD-KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGT  106 (220)
Q Consensus        28 ~ta~~~l~~~~~~-~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  106 (220)
                      ..+|.++.+...+ ..|++|+|+|.|.+|+.+++.++.+|++|++++.++.+..++ ...|+. +.+      +.+...+
T Consensus       196 ~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A-~~~G~~-v~~------l~eal~~  267 (425)
T PRK05476        196 ESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQA-AMDGFR-VMT------MEEAAEL  267 (425)
T ss_pred             hhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHH-HhcCCE-ecC------HHHHHhC
Confidence            4456666666333 489999999999999999999999999999999888776555 344654 221      2333458


Q ss_pred             ccEEEEcCCCcccHH-HHHhccccCCEEEEecCCCC
Q 027668          107 MDGIIDTVSAVHPLM-PLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       107 ~d~vid~~g~~~~~~-~~~~~l~~~g~iv~~g~~~~  141 (220)
                      +|++|+|+|..+.+. ..+..+++++.++..|..+.
T Consensus       268 aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        268 GDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDN  303 (425)
T ss_pred             CCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence            999999999887665 57888999999999998764

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.02  E-value=4.5e-08  Score=76.33  Aligned_cols=111  Identities=19%  Similarity=0.240  Sum_probs=83.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  121 (220)
                      .+++|+|+|.|.+|+.+++.++.+|++|++++++.++.+.+ +.+|...+.    .+.+.+...++|+||+|++......
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~-~~~G~~~~~----~~~l~~~l~~aDiVI~t~p~~~i~~  225 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARI-TEMGLSPFH----LSELAEEVGKIDIIFNTIPALVLTK  225 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHcCCeeec----HHHHHHHhCCCCEEEECCChhhhhH
Confidence            68999999999999999999999999999999998776555 577866431    2334455568999999987653345


Q ss_pred             HHHhccccCCEEEEecCCCCCcccCccccccCCcEEEE
Q 027668          122 PLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGG  159 (220)
Q Consensus       122 ~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~  159 (220)
                      ..++.+++++.++.++...+..++.  ....++++..+
T Consensus       226 ~~l~~~~~g~vIIDla~~pggtd~~--~a~~~Gv~~~~  261 (296)
T PRK08306        226 EVLSKMPPEALIIDLASKPGGTDFE--YAEKRGIKALL  261 (296)
T ss_pred             HHHHcCCCCcEEEEEccCCCCcCee--ehhhCCeEEEE
Confidence            6778899999999998876554442  33345555553

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.00  E-value=5.2e-09  Score=80.90  Aligned_cols=169  Identities=17%  Similarity=0.197  Sum_probs=99.7

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHH---cCCcEE-ecCCCHHHHHHhcCCccEEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVER---LGADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~---~g~~~v-~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .+++|++||.+|+|+ |..+.++++..|.  +|+.++.+++..+.+.+.   ++...+ +...+.+.+....+.||+|+.
T Consensus        74 ~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~  152 (272)
T PRK11873         74 ELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIIS  152 (272)
T ss_pred             cCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence            478999999999987 8888888888775  699999998877666432   343222 111111111101137999985


Q ss_pred             cC-C-----CcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcce-e--
Q 027668          113 TV-S-----AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRA-D--  183 (220)
Q Consensus       113 ~~-g-----~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~--  183 (220)
                      .. .     ....+..+.+.|++||+++..+..... +.  .....+...+.+..........++.+++.+..+.. .  
T Consensus       153 ~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf~~v~i~  229 (272)
T PRK11873        153 NCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG-EL--PEEIRNDAELYAGCVAGALQEEEYLAMLAEAGFVDITIQ  229 (272)
T ss_pred             cCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC-CC--CHHHHHhHHHHhccccCCCCHHHHHHHHHHCCCCceEEE
Confidence            43 1     123578899999999999998765322 11  11122222222221111123445666666644432 2  


Q ss_pred             E-EEEecccHHHHHHHH--HcCCcceEEEEE
Q 027668          184 I-EVIPADYVNTAMERL--AKADVRYRFVID  211 (220)
Q Consensus       184 i-~~~~~~~i~~a~~~~--~~~~~~~k~v~~  211 (220)
                      . ..+++++..++++.+  .++...++.+..
T Consensus       230 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  260 (272)
T PRK11873        230 PKREYRIPDAREFLEDWGIAPGRQLDGYIVS  260 (272)
T ss_pred             eccceecccHHHHHHHhccccccccCceEEE
Confidence            2 578899999999988  544444444443

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.98  E-value=4.8e-08  Score=78.45  Aligned_cols=99  Identities=20%  Similarity=0.251  Sum_probs=75.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCC---C--
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVS---A--  116 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g---~--  116 (220)
                      ++.+|+|+|+|.+|+.+++.++.+|++|++++++.++.+.+.+.++........+.+.+.+...++|++|+|++   .  
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~  245 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKA  245 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCC
Confidence            34568999999999999999999999999999998887777666775433334445555566678999999983   2  


Q ss_pred             cc-cHHHHHhccccCCEEEEecCCC
Q 027668          117 VH-PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       117 ~~-~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +. .....++.+++++.++.++...
T Consensus       246 p~lit~~~l~~mk~g~vIvDva~d~  270 (370)
T TIGR00518       246 PKLVSNSLVAQMKPGAVIVDVAIDQ  270 (370)
T ss_pred             CcCcCHHHHhcCCCCCEEEEEecCC
Confidence            21 1356778899999999988764

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PLN02494 adenosylhomocysteinase

Probab=98.96  E-value=2.8e-08  Score=80.76  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=79.1

Q ss_pred             hhhhHhccC-CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 027668           31 YSPLRFYGL-DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        31 ~~~l~~~~~-~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~  109 (220)
                      +.++.+... .-.|++++|+|.|.+|+.+++.++.+|++|+++..++.+..++ ...|...+    .   +.+.....|+
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-~~~G~~vv----~---leEal~~ADV  312 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA-LMEGYQVL----T---LEDVVSEADI  312 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-HhcCCeec----c---HHHHHhhCCE
Confidence            444544432 3679999999999999999999999999999998887765554 45566532    1   2233357899


Q ss_pred             EEEcCCCcccH-HHHHhccccCCEEEEecCCCC
Q 027668          110 IIDTVSAVHPL-MPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       110 vid~~g~~~~~-~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      +|+|.|....+ ...+..+++++.++.+|....
T Consensus       313 VI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~  345 (477)
T PLN02494        313 FVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDN  345 (477)
T ss_pred             EEECCCCccchHHHHHhcCCCCCEEEEcCCCCC
Confidence            99999988754 679999999999999998653

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.86  E-value=4.6e-08  Score=78.79  Aligned_cols=103  Identities=21%  Similarity=0.183  Sum_probs=78.5

Q ss_pred             hhhhhHhc-cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCcc
Q 027668           30 VYSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        30 a~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  108 (220)
                      ++.++.+. .....|++|+|+|.|.+|+.+++.++.+|++|++++.++.+..++ ...|+. +.+      +.+...+.|
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A-~~~G~~-v~~------leeal~~aD  252 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA-AMDGFR-VMT------MEEAAKIGD  252 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH-HhcCCE-eCC------HHHHHhcCC
Confidence            34444444 323689999999999999999999999999999998887765555 455663 221      122335789


Q ss_pred             EEEEcCCCcccHHH-HHhccccCCEEEEecCCC
Q 027668          109 GIIDTVSAVHPLMP-LIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       109 ~vid~~g~~~~~~~-~~~~l~~~g~iv~~g~~~  140 (220)
                      ++|+++|....+.. .+..+++++.++.+|...
T Consensus       253 VVItaTG~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       253 IFITATGNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             EEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence            99999999876764 888999999999998764

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.82  E-value=5.3e-08  Score=76.58  Aligned_cols=108  Identities=20%  Similarity=0.274  Sum_probs=78.1

Q ss_pred             ceeeCCCCCCcccccccchhhhhhhhhhHhccC---CCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHH
Q 027668            7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL---DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA   82 (220)
Q Consensus         7 ~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~---~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~   82 (220)
                      ..+++|+.++.+.++... ....++++++....   -.++.+|+|+|+|.+|+.+++.++..|. +|++++++.++.+.+
T Consensus       140 ~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~l  218 (311)
T cd05213         140 KAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEEL  218 (311)
T ss_pred             HHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH
Confidence            456778888888776443 23444555544332   1478999999999999999999998886 888999988887788


Q ss_pred             HHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           83 VERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        83 ~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      ++++|.. +.+.   +...+....+|+||.|++.+..
T Consensus       219 a~~~g~~-~~~~---~~~~~~l~~aDvVi~at~~~~~  251 (311)
T cd05213         219 AKELGGN-AVPL---DELLELLNEADVVISATGAPHY  251 (311)
T ss_pred             HHHcCCe-EEeH---HHHHHHHhcCCEEEECCCCCch
Confidence            7888874 3222   2233334579999999999864

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=98.72  E-value=1.9e-08  Score=85.52  Aligned_cols=120  Identities=23%  Similarity=0.221  Sum_probs=76.0

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc---------------------ccHHHHHHHcCCcEEecCCC-H
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP---------------------SKKSEAVERLGADSFLVSRD-Q   97 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~---------------------~~~~~~~~~~g~~~v~~~~~-~   97 (220)
                      .++|++|+|+|+|+.|+++++.++..|++|+++++.+                     .+.+.+ +++|++..++... .
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~-~~~Gv~~~~~~~~~~  212 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRI-LDLGVEVRLGVRVGE  212 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHH-HHCCCEEEeCCEECC
Confidence            5789999999999999999999999999999988532                     223333 6789876665432 1


Q ss_pred             H-HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEee
Q 027668           98 D-EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSL  161 (220)
Q Consensus        98 ~-~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~  161 (220)
                      + .......++|+||+++|........+.....+|.+..++........+ .....+++.+.|..
T Consensus       213 ~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~-~~~~gk~v~ViGgg  276 (564)
T PRK12771        213 DITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGE-PPFLGKRVVVIGGG  276 (564)
T ss_pred             cCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccC-CcCCCCCEEEECCh
Confidence            1 122223479999999998754444444455556555544332111111 22334566666643

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.65  E-value=1.4e-06  Score=67.60  Aligned_cols=99  Identities=19%  Similarity=0.313  Sum_probs=74.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  121 (220)
                      .|++++|+|.|.+|..+++.++.+|++|++..+++++...+ .++|...+    ..+.+.+...++|+||+|++..-.-.
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~-~~~g~~~~----~~~~l~~~l~~aDiVint~P~~ii~~  224 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI-TEMGLIPF----PLNKLEEKVAEIDIVINTIPALVLTA  224 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHCCCeee----cHHHHHHHhccCCEEEECCChHHhCH
Confidence            57899999999999999999999999999999988766555 45565432    12334445568999999987652224


Q ss_pred             HHHhccccCCEEEEecCCCCCccc
Q 027668          122 PLIGLLKSQGKLVLLGAPEKPLEL  145 (220)
Q Consensus       122 ~~~~~l~~~g~iv~~g~~~~~~~~  145 (220)
                      ..+..++++..++.++...+..++
T Consensus       225 ~~l~~~k~~aliIDlas~Pg~tdf  248 (287)
T TIGR02853       225 DVLSKLPKHAVIIDLASKPGGTDF  248 (287)
T ss_pred             HHHhcCCCCeEEEEeCcCCCCCCH
Confidence            567778888888888876655444

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.60  E-value=8.3e-07  Score=72.55  Aligned_cols=95  Identities=17%  Similarity=0.227  Sum_probs=75.2

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      +..-.|++++|+|.|.+|..+++.++.+|++|+++.+++.+...+ ...|+..+       .+.+.....|+|+.++|..
T Consensus       249 ~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A-~~~G~~~~-------~leell~~ADIVI~atGt~  320 (476)
T PTZ00075        249 DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQA-AMEGYQVV-------TLEDVVETADIFVTATGNK  320 (476)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHH-HhcCceec-------cHHHHHhcCCEEEECCCcc
Confidence            334589999999999999999999999999999998877665444 33565422       1334445899999999988


Q ss_pred             ccHH-HHHhccccCCEEEEecCCC
Q 027668          118 HPLM-PLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       118 ~~~~-~~~~~l~~~g~iv~~g~~~  140 (220)
                      +.+. ..+..|++++.++.+|...
T Consensus       321 ~iI~~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        321 DIITLEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             cccCHHHHhccCCCcEEEEcCCCc
Confidence            7665 7899999999999998764

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=98.60  E-value=1.3e-06  Score=64.89  Aligned_cols=106  Identities=17%  Similarity=0.301  Sum_probs=77.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC----cEEecCCCHHHHHH----hc---CCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----DSFLVSRDQDEMQA----AM---GTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~----~~---~~~d~  109 (220)
                      +++.++|.|+ +++|.++++.+...|++|+.+.|..++++.++.+++.    ...+|-.+.+.+..    +.   +.+|+
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDi   84 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDI   84 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccE
Confidence            4578899998 8999999999999999999999999999999999992    34456666544332    22   37999


Q ss_pred             EEEcCCCcc-------------------------cHHHHHhcc--ccCCEEEEecCCCCCcccCc
Q 027668          110 IIDTVSAVH-------------------------PLMPLIGLL--KSQGKLVLLGAPEKPLELPA  147 (220)
Q Consensus       110 vid~~g~~~-------------------------~~~~~~~~l--~~~g~iv~~g~~~~~~~~~~  147 (220)
                      .++.+|-..                         ..+..+..|  ++.|.++.+++..+..+++.
T Consensus        85 LvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~  149 (246)
T COG4221          85 LVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPG  149 (246)
T ss_pred             EEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCC
Confidence            999988741                         111222222  35789999998765544443

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.48  E-value=3.5e-07  Score=63.00  Aligned_cols=97  Identities=20%  Similarity=0.346  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCc--EEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGAD--SFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      -++.+++|+|+|++|.+++..+...|+ +++++.|+.++.+.+.+.++..  ......+   ..+....+|+||+|++..
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~---~~~~~~~~DivI~aT~~~   86 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED---LEEALQEADIVINATPSG   86 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG---HCHHHHTESEEEE-SSTT
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH---HHHHHhhCCeEEEecCCC
Confidence            467999999999999999999999999 5999999999988888888532  2333332   223334799999998876


Q ss_pred             cc--HHHHHhcccc-CCEEEEecCCC
Q 027668          118 HP--LMPLIGLLKS-QGKLVLLGAPE  140 (220)
Q Consensus       118 ~~--~~~~~~~l~~-~g~iv~~g~~~  140 (220)
                      ..  ....+....+ -+.++.++.+.
T Consensus        87 ~~~i~~~~~~~~~~~~~~v~Dla~Pr  112 (135)
T PF01488_consen   87 MPIITEEMLKKASKKLRLVIDLAVPR  112 (135)
T ss_dssp             STSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred             CcccCHHHHHHHHhhhhceeccccCC
Confidence            32  1222222222 14666766543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.47  E-value=9.2e-07  Score=72.53  Aligned_cols=106  Identities=24%  Similarity=0.339  Sum_probs=71.7

Q ss_pred             eeCCCCCCcccccccchhhhhhhhhhHhccC---CCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH
Q 027668            9 VRIPEGAPLDATAPLLCAGITVYSPLRFYGL---DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE   84 (220)
Q Consensus         9 ~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~---~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~   84 (220)
                      +++|+.+..+.+. .......+++++.....   -.++++|+|+|+|.+|+.+++.++..|+ +++++.++.++.+.+++
T Consensus       146 ~~~~k~v~~~t~i-~~~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~  224 (423)
T PRK00045        146 FSVAKRVRTETGI-GAGAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAE  224 (423)
T ss_pred             HHHHhhHhhhcCC-CCCCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH
Confidence            3455555444332 11223333455543321   2578999999999999999999999998 89999999888777778


Q ss_pred             HcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           85 RLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        85 ~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      ++|.. ++..   +...+...++|+||+|+|.+..
T Consensus       225 ~~g~~-~~~~---~~~~~~l~~aDvVI~aT~s~~~  255 (423)
T PRK00045        225 EFGGE-AIPL---DELPEALAEADIVISSTGAPHP  255 (423)
T ss_pred             HcCCc-EeeH---HHHHHHhccCCEEEECCCCCCc
Confidence            88864 3222   2233334589999999988753

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.33  E-value=7.3e-06  Score=67.13  Aligned_cols=76  Identities=20%  Similarity=0.404  Sum_probs=59.6

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      ..++++|+|+|+|.+|..+++.++..|+ +|+++.++.++.+.+++.+|...+ ..   +...+...++|+||+|++.+.
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i-~~---~~l~~~l~~aDvVi~aT~s~~  252 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAV-KF---EDLEEYLAEADIVISSTGAPH  252 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEe-eH---HHHHHHHhhCCEEEECCCCCC
Confidence            3678999999999999999999999995 899999998877777778886432 22   233344458999999998775


Q ss_pred             c
Q 027668          119 P  119 (220)
Q Consensus       119 ~  119 (220)
                      .
T Consensus       253 ~  253 (417)
T TIGR01035       253 P  253 (417)
T ss_pred             c
Confidence            4

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.30  E-value=9.4e-06  Score=64.98  Aligned_cols=97  Identities=25%  Similarity=0.273  Sum_probs=74.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHHcC--C-cEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLG--A-DSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~g--~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      .+|||+|+|.+|+.+++.+.+.| .+|++.+++.++..++....+  . ...+|..+.+.+.++..++|+||+|.+....
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            57899999999999999988888 699999999988887744332  2 3456777777787888888999999998754


Q ss_pred             HHHHHhccccCCEEEEecCCC
Q 027668          120 LMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ....-.+++.|=.++.+....
T Consensus        82 ~~i~ka~i~~gv~yvDts~~~  102 (389)
T COG1748          82 LTILKACIKTGVDYVDTSYYE  102 (389)
T ss_pred             HHHHHHHHHhCCCEEEcccCC
Confidence            444445666666666665543

>PRK08324 short chain dehydrogenase; Validated

Probab=98.24  E-value=1.1e-05  Score=70.38  Aligned_cols=99  Identities=22%  Similarity=0.325  Sum_probs=70.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-----cEEecCCCHHHHHHh-------cCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-----DSFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-----~~v~~~~~~~~~~~~-------~~~~d  108 (220)
                      +|+++||.|+ |++|+.+++.+...|++|++++++.++.+.+.+.++.     ....|..+.+.+.+.       .+++|
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD  500 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD  500 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            6789999996 9999999999999999999999998877666555543     122344554433322       24799


Q ss_pred             EEEEcCCCcc-------------------------cHHHHHhcccc---CCEEEEecCCC
Q 027668          109 GIIDTVSAVH-------------------------PLMPLIGLLKS---QGKLVLLGAPE  140 (220)
Q Consensus       109 ~vid~~g~~~-------------------------~~~~~~~~l~~---~g~iv~~g~~~  140 (220)
                      ++|+++|...                         .++.+++.+++   +|+++.+++..
T Consensus       501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~  560 (681)
T PRK08324        501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKN  560 (681)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Confidence            9999998421                         12334555555   68999988754

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.23  E-value=4.8e-05  Score=53.38  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=67.0

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      ...-.|++++|.|=|.+|.-.++.++.+|++|++++.++-+.-++. .-|....       .+.+.....|++|.++|..
T Consensus        18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~-~dGf~v~-------~~~~a~~~adi~vtaTG~~   89 (162)
T PF00670_consen   18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAA-MDGFEVM-------TLEEALRDADIFVTATGNK   89 (162)
T ss_dssp             -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHH-HTT-EEE--------HHHHTTT-SEEEE-SSSS
T ss_pred             ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhh-hcCcEec-------CHHHHHhhCCEEEECCCCc
Confidence            4456899999999999999999999999999999999998766663 3355422       2445556889999999998


Q ss_pred             ccH-HHHHhccccCCEEEEecCCCCCc
Q 027668          118 HPL-MPLIGLLKSQGKLVLLGAPEKPL  143 (220)
Q Consensus       118 ~~~-~~~~~~l~~~g~iv~~g~~~~~~  143 (220)
                      +.+ ..-+..|+++..+..+|..+..+
T Consensus        90 ~vi~~e~~~~mkdgail~n~Gh~d~Ei  116 (162)
T PF00670_consen   90 DVITGEHFRQMKDGAILANAGHFDVEI  116 (162)
T ss_dssp             SSB-HHHHHHS-TTEEEEESSSSTTSB
T ss_pred             cccCHHHHHHhcCCeEEeccCcCceeE
Confidence            754 46778888888887777655433

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=1.2e-05  Score=58.59  Aligned_cols=102  Identities=28%  Similarity=0.325  Sum_probs=71.8

Q ss_pred             hhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHH---HHHcCCcEEe-cCCCHHHHHHh-cCCc
Q 027668           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA---VERLGADSFL-VSRDQDEMQAA-MGTM  107 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~---~~~~g~~~v~-~~~~~~~~~~~-~~~~  107 (220)
                      +++... ++|+++||-+|+|+ |..++-+++.-| +|+.+.+.++=.+.+   .+.+|...|. ...| ...-.- ...|
T Consensus        64 m~~~L~-~~~g~~VLEIGtGs-GY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gD-G~~G~~~~aPy  139 (209)
T COG2518          64 MLQLLE-LKPGDRVLEIGTGS-GYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGD-GSKGWPEEAPY  139 (209)
T ss_pred             HHHHhC-CCCCCeEEEECCCc-hHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECC-cccCCCCCCCc
Confidence            344444 79999999999985 999999999888 999999987733333   3466763332 2222 111011 1279


Q ss_pred             cEEEEcCCCcccHHHHHhccccCCEEEEecC
Q 027668          108 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       108 d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      |.++-+++.+..-+..++.|++||+++..-.
T Consensus       140 D~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         140 DRIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             CEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence            9999888887666889999999999987644

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.20  E-value=1.3e-05  Score=61.38  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=78.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc-----
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH-----  118 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-----  118 (220)
                      .+|.|+|+|.+|.-++++|..+|++|++.+.+.+|++++...|+.....-++....+++...+.|++|.++--+.     
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPk  248 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPK  248 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCce
Confidence            467788999999999999999999999999999999888777776533446666677776678999998763221     


Q ss_pred             -cHHHHHhccccCCEEEEecCCCC
Q 027668          119 -PLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       119 -~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                       ..+..++.|+||+.++.+....+
T Consensus       249 Lvt~e~vk~MkpGsVivDVAiDqG  272 (371)
T COG0686         249 LVTREMVKQMKPGSVIVDVAIDQG  272 (371)
T ss_pred             ehhHHHHHhcCCCcEEEEEEEcCC
Confidence             25677899999999998876553

>PRK12742 oxidoreductase; Provisional

Probab=98.20  E-value=3.5e-05  Score=58.13  Aligned_cols=99  Identities=19%  Similarity=0.283  Sum_probs=66.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHHHcCCcEE-ecCCCHHHHHHhc---CCccEEEEcCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERLGADSF-LVSRDQDEMQAAM---GTMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~---~~~d~vid~~g  115 (220)
                      +++++||.|+ |.+|..+++.+...|++|+++.+ ++++.+++.++++...+ .|..+.+.+.+..   +++|++|+++|
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag   84 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNAG   84 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECCC
Confidence            4689999997 99999999999999999887765 34445555455665433 3444544443332   36999999987


Q ss_pred             Cccc-------------------------HHHHHhccccCCEEEEecCCC
Q 027668          116 AVHP-------------------------LMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       116 ~~~~-------------------------~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ....                         ...+...++++|+++.++...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  134 (237)
T PRK12742         85 IAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVN  134 (237)
T ss_pred             CCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            6310                         023334456678999887654

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=98.19  E-value=2.1e-05  Score=59.85  Aligned_cols=77  Identities=14%  Similarity=0.229  Sum_probs=59.5

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-----E--ecCCCHHHHHHh----c---C
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-----F--LVSRDQDEMQAA----M---G  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-----v--~~~~~~~~~~~~----~---~  105 (220)
                      ..+.++||.|+ +++|...+..+...|.+++.+.|+.++++++.+++.-.+     +  .|..+.+.+..+    .   .
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~   83 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG   83 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence            56789999998 999999999999999999999999999988877765211     2  244444333322    1   2


Q ss_pred             CccEEEEcCCCc
Q 027668          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~vid~~g~~  117 (220)
                      .+|+.|+++|..
T Consensus        84 ~IdvLVNNAG~g   95 (265)
T COG0300          84 PIDVLVNNAGFG   95 (265)
T ss_pred             cccEEEECCCcC
Confidence            699999999885

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=98.19  E-value=8.8e-06  Score=58.76  Aligned_cols=76  Identities=16%  Similarity=0.190  Sum_probs=58.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC--cEEecCCCHHHHHH----hc---CCccEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSFLVSRDQDEMQA----AM---GTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~----~~---~~~d~vi  111 (220)
                      .|.+|||.|+ +++|+.+++-....|-+||+.+|++++++++......  ..+.|-.+.+..++    +.   ...++++
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvli   83 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVLI   83 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchheee
Confidence            4789999985 8999999999999999999999999999998655542  44555555543332    22   2789999


Q ss_pred             EcCCCc
Q 027668          112 DTVSAV  117 (220)
Q Consensus       112 d~~g~~  117 (220)
                      +++|-.
T Consensus        84 NNAGIq   89 (245)
T COG3967          84 NNAGIQ   89 (245)
T ss_pred             eccccc
Confidence            998863

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.19  E-value=1.7e-05  Score=57.39  Aligned_cols=92  Identities=26%  Similarity=0.320  Sum_probs=67.8

Q ss_pred             EEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCcc----c
Q 027668           46 VGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVH----P  119 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~~----~  119 (220)
                      |+|.|+ |.+|..+++.+...|.+|+++++++++.+.   ..+.+.+ .|..+.+.+.+...++|.||.++|...    .
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~~~~~   77 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPKDVDA   77 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTTHHHH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcccccc
Confidence            689998 999999999999999999999999887655   3444433 355667777777789999999998532    2


Q ss_pred             HHHHHhccccCC--EEEEecCCC
Q 027668          120 LMPLIGLLKSQG--KLVLLGAPE  140 (220)
Q Consensus       120 ~~~~~~~l~~~g--~iv~~g~~~  140 (220)
                      ....++.++..|  +++.++...
T Consensus        78 ~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   78 AKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETT
T ss_pred             cccccccccccccccceeeeccc
Confidence            344555554443  777766543

...

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.16  E-value=8.3e-05  Score=60.04  Aligned_cols=74  Identities=28%  Similarity=0.460  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      -.+.++||+|+|-+|..++..+...|. ++++..|+.++.+++++++|+..+    ..+.+......+|+||-|+|.+.
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~----~l~el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAV----ALEELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeee----cHHHHHHhhhhCCEEEEecCCCc
Confidence            477899999999999999999999997 999999999999999999996544    22334444568999999998875

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=98.14  E-value=4e-05  Score=64.43  Aligned_cols=78  Identities=21%  Similarity=0.233  Sum_probs=59.0

Q ss_pred             CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc--------C------CcE-EecCCCHHHHHHh
Q 027668           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--------G------ADS-FLVSRDQDEMQAA  103 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~--------g------~~~-v~~~~~~~~~~~~  103 (220)
                      .+.|++|||.|+ |.+|..+++.+...|++|++++++.++.+.+.+.+        |      ... ..|..+.+.+.+.
T Consensus        77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            468899999997 99999999999999999999999887765543321        2      111 2355556667666


Q ss_pred             cCCccEEEEcCCCc
Q 027668          104 MGTMDGIIDTVSAV  117 (220)
Q Consensus       104 ~~~~d~vid~~g~~  117 (220)
                      .+++|+||.++|..
T Consensus       157 LggiDiVVn~AG~~  170 (576)
T PLN03209        157 LGNASVVICCIGAS  170 (576)
T ss_pred             hcCCCEEEEccccc
Confidence            67999999998864

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.14  E-value=6.4e-05  Score=53.60  Aligned_cols=98  Identities=19%  Similarity=0.270  Sum_probs=69.9

Q ss_pred             ccccchhhhhhhhhhHhccCCCCCCEEEEEcCch-HHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHH
Q 027668           20 TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD   98 (220)
Q Consensus        20 aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~-~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~   98 (220)
                      ....++...++...++....--.|.+|+|+|+|. +|..++..++..|++|+++.+..+                     
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------   79 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------   79 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------
Confidence            4456666666666666665446889999999986 599999999999999888887632                     


Q ss_pred             HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668           99 EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        99 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+.+....+|+||.+++.++.+..  +.++++-.++.++.+.
T Consensus        80 ~l~~~l~~aDiVIsat~~~~ii~~--~~~~~~~viIDla~pr  119 (168)
T cd01080          80 NLKEHTKQADIVIVAVGKPGLVKG--DMVKPGAVVIDVGINR  119 (168)
T ss_pred             hHHHHHhhCCEEEEcCCCCceecH--HHccCCeEEEEccCCC
Confidence            122333578999999999764433  2466666677777654

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.13  E-value=2.7e-05  Score=51.61  Aligned_cols=93  Identities=27%  Similarity=0.344  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHH-HCCCeEEEEeCCcccHHHHHHHc---C--Cc-EEecCCCHHHHHHhcCCccEEEEcC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAK-AMGVKVTVISTSPSKKSEAVERL---G--AD-SFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~---g--~~-~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      |+.+||-+|+|. |..++.+++ ..|++++.++.+++..+.+.+.+   +  .. .++..+- .......++||+|+...
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTTSSCEEEEEECS
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCcccCCCCCEEEECC
Confidence            688999999875 788888888 57889999999998877776655   2  12 2222222 22222334899999877


Q ss_pred             -CCc---c------cHHHHHhccccCCEEEEe
Q 027668          115 -SAV---H------PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       115 -g~~---~------~~~~~~~~l~~~g~iv~~  136 (220)
                       ...   +      .++.+.+.|+++|+++..
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~  110 (112)
T PF12847_consen   79 FTLHFLLPLDERRRVLERIRRLLKPGGRLVIN  110 (112)
T ss_dssp             GSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CccccccchhHHHHHHHHHHHhcCCCcEEEEE
Confidence             221   1      256788899999999864

...

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.13  E-value=1.5e-05  Score=57.60  Aligned_cols=122  Identities=18%  Similarity=0.311  Sum_probs=82.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--  118 (220)
                      -.|.+|.|+|.|.+|+.+++.++.+|++|++.+++....... ...+...    .+   +.++....|+|+.+....+  
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-~~~~~~~----~~---l~ell~~aDiv~~~~plt~~T  105 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-DEFGVEY----VS---LDELLAQADIVSLHLPLTPET  105 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-HHTTEEE----SS---HHHHHHH-SEEEE-SSSSTTT
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhc-cccccee----ee---hhhhcchhhhhhhhhcccccc
Confidence            468999999999999999999999999999999998654423 3444421    12   3333446899998876422  


Q ss_pred             --cH-HHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHH
Q 027668          119 --PL-MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNT  194 (220)
Q Consensus       119 --~~-~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~  194 (220)
                        .+ ...+..++++..+|.++...-                        -+-+.+++.+++|.+.-.. +++.-|..+.
T Consensus       106 ~~li~~~~l~~mk~ga~lvN~aRG~~------------------------vde~aL~~aL~~g~i~ga~lDV~~~EP~~~  161 (178)
T PF02826_consen  106 RGLINAEFLAKMKPGAVLVNVARGEL------------------------VDEDALLDALESGKIAGAALDVFEPEPLPA  161 (178)
T ss_dssp             TTSBSHHHHHTSTTTEEEEESSSGGG------------------------B-HHHHHHHHHTTSEEEEEESS-SSSSSST
T ss_pred             ceeeeeeeeeccccceEEEeccchhh------------------------hhhhHHHHHHhhccCceEEEECCCCCCCCC
Confidence              12 357888999998888765221                        1355788888899888554 7776665543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=98.11  E-value=0.00019  Score=53.03  Aligned_cols=115  Identities=16%  Similarity=0.100  Sum_probs=73.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      .|.+|||+|+|.+|..-++.+...|++|++++.... ....+. +.|.-..+. .+.+  .....++++||-+++....-
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~-~~~~i~~~~-~~~~--~~dl~~~~lVi~at~d~~ln   83 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLA-EQGGITWLA-RCFD--ADILEGAFLVIAATDDEELN   83 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH-HcCCEEEEe-CCCC--HHHhCCcEEEEECCCCHHHH
Confidence            468999999999999999999999999999887653 233332 233211222 2211  12235899999999997544


Q ss_pred             HHHHhccccCCEEEEecCCCCCcccCccccc-cCCcEEEEe
Q 027668          121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLL-TGEKIVGGS  160 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~-~~~~~i~~~  160 (220)
                      .......+..|..+.........+|-.+..+ ...+++.-+
T Consensus        84 ~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iais  124 (205)
T TIGR01470        84 RRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAIS  124 (205)
T ss_pred             HHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEE
Confidence            4566666677888876554444444444333 345666444

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.10  E-value=4.6e-05  Score=55.46  Aligned_cols=100  Identities=18%  Similarity=0.212  Sum_probs=72.5

Q ss_pred             CCCEEEEEcC--chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-cEEecCCCHHHHHHh-------c-CCccEE
Q 027668           42 PGMHVGVVGL--GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAA-------M-GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~--g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~-------~-~~~d~v  110 (220)
                      ..+.|||.|+  |++|.+++.-....|+.|+++.+.-++...+..++|. .+-+|-.+++.+.+.       . +..|+.
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            4478999984  9999999999999999999999999998888778885 334555555444322       2 378999


Q ss_pred             EEcCCCcc----------------------c--HHHHH--hccccCCEEEEecCCCC
Q 027668          111 IDTVSAVH----------------------P--LMPLI--GLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       111 id~~g~~~----------------------~--~~~~~--~~l~~~g~iv~~g~~~~  141 (220)
                      ++.+|.+=                      .  +..++  ..++..|+||.+|+..+
T Consensus        86 ~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~  142 (289)
T KOG1209|consen   86 YNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAG  142 (289)
T ss_pred             EcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeE
Confidence            99888741                      0  11111  23577899999987653

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=98.09  E-value=6.2e-05  Score=56.78  Aligned_cols=99  Identities=21%  Similarity=0.341  Sum_probs=67.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC---CcEE--ecCCCHHHHHHh-------cCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---ADSF--LVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g---~~~v--~~~~~~~~~~~~-------~~~~d  108 (220)
                      ++++|+|.|+ |.+|..+++.+...|++|+.+++++++.+.+.+.+.   ....  .|-.+.+.+.+.       .+++|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4689999997 999999999999999999999999877655533332   2122  233444333222       24689


Q ss_pred             EEEEcCCCcc-----------------------cHHHHHhccccCCEEEEecCCC
Q 027668          109 GIIDTVSAVH-----------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       109 ~vid~~g~~~-----------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .++.++|...                       .++..+++++++|+++.++...
T Consensus        84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~  138 (238)
T PRK05786         84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMS  138 (238)
T ss_pred             EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecch
Confidence            9999887531                       1334455667789999887754

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.08  E-value=0.00011  Score=53.92  Aligned_cols=78  Identities=21%  Similarity=0.257  Sum_probs=57.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCcE-EecCCCHHHHHHhcCCccEEEEcC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADS-FLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~~-v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      -++.+++|+|+ |.+|..++..+...|++|+++.++.++.+.+.+.+    +... ..+..+.+...+...++|+||.++
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at  105 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG  105 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence            36789999997 99999999988889999999999888776665544    3321 223344455555556899999988


Q ss_pred             CCcc
Q 027668          115 SAVH  118 (220)
Q Consensus       115 g~~~  118 (220)
                      +...
T Consensus       106 ~~g~  109 (194)
T cd01078         106 AAGV  109 (194)
T ss_pred             CCCc
Confidence            7664

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.08  E-value=8.1e-05  Score=54.77  Aligned_cols=96  Identities=17%  Similarity=0.231  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHH---HHcC-CcE--EecCCCHHHHHHhcCCccEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAV---ERLG-ADS--FLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~---~~~g-~~~--v~~~~~~~~~~~~~~~~d~v  110 (220)
                      .+.++++|+.+|+|+ |..++.+++..+  .+|+.++.+++..+.+.   +.+| .+.  ++..+..+.+....+.+|.|
T Consensus        37 ~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V  115 (198)
T PRK00377         37 RLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRI  115 (198)
T ss_pred             CCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence            378999999999987 888888888764  48999999987665442   3455 222  22222223333333589999


Q ss_pred             EEcCCCc---ccHHHHHhccccCCEEEE
Q 027668          111 IDTVSAV---HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus       111 id~~g~~---~~~~~~~~~l~~~g~iv~  135 (220)
                      |...+..   ..+..+.+.|+++|+++.
T Consensus       116 ~~~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        116 FIGGGSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             EECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence            9865432   246677888999999985

>PRK06182 short chain dehydrogenase; Validated

Probab=98.07  E-value=9.7e-05  Score=57.05  Aligned_cols=75  Identities=21%  Similarity=0.261  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      ++++++|.|+ |.+|..+++.+...|++|++++++.++.+.+. ..+... ..|-.+.+.+.+.       .+++|++|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            4578999997 99999999999999999999999887665552 334433 2355555444322       248999999


Q ss_pred             cCCCc
Q 027668          113 TVSAV  117 (220)
Q Consensus       113 ~~g~~  117 (220)
                      ++|..
T Consensus        81 ~ag~~   85 (273)
T PRK06182         81 NAGYG   85 (273)
T ss_pred             CCCcC
Confidence            99853

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.04  E-value=7.1e-05  Score=61.12  Aligned_cols=76  Identities=16%  Similarity=0.216  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      -.+.+|+|+|+|.+|.+++..+...|+ +++++.++.++.+.+.++++...+...   +...+....+|+||+|++.++.
T Consensus       179 l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~---~~l~~~l~~aDiVI~aT~a~~~  255 (414)
T PRK13940        179 ISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYL---SELPQLIKKADIIIAAVNVLEY  255 (414)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecH---HHHHHHhccCCEEEECcCCCCe
Confidence            467899999999999999999999997 899999998888888777762222222   2333445679999999999864

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.04  E-value=8.2e-05  Score=57.13  Aligned_cols=107  Identities=18%  Similarity=0.320  Sum_probs=74.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCcE-E----ecCCCHHHHHH-------hcC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADS-F----LVSRDQDEMQA-------AMG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~~-v----~~~~~~~~~~~-------~~~  105 (220)
                      .|+.|+|.|| +++|.+++.-+-..|++++.+.+..++++...+   +.+... +    .|-.+.+.+++       ..+
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            5688999998 899999999999999999999988887666533   333221 1    23334444432       235


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccC--CEEEEecCCCCCcccCcc
Q 027668          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQ--GKLVLLGAPEKPLELPAF  148 (220)
Q Consensus       106 ~~d~vid~~g~~~-------------------------~~~~~~~~l~~~--g~iv~~g~~~~~~~~~~~  148 (220)
                      ++|+.++.+|-..                         ..+.++..|++.  |+|+.+++..+-..++..
T Consensus        91 ~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~  160 (282)
T KOG1205|consen   91 RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFR  160 (282)
T ss_pred             CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcc
Confidence            8999999988742                         234566666543  999999988765555543

>PRK05993 short chain dehydrogenase; Provisional

Probab=98.03  E-value=0.00014  Score=56.28  Aligned_cols=74  Identities=16%  Similarity=0.273  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHh-------c-CCccEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------M-GTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~-~~~d~vi  111 (220)
                      .+++++|.|+ |.+|..+++.+...|++|+++++++++.+.+ ...+...+ .|..+.+.+.+.       . +.+|++|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l-~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAAL-EAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            4678999997 9999999999999999999999998776665 34455433 355554433221       1 3689999


Q ss_pred             EcCCC
Q 027668          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        82 ~~Ag~   86 (277)
T PRK05993         82 NNGAY   86 (277)
T ss_pred             ECCCc
Confidence            99874

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.03  E-value=0.00013  Score=52.24  Aligned_cols=97  Identities=21%  Similarity=0.253  Sum_probs=67.8

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHH---HHHcCCc--EEecCCCHHHHHHhcCCccEEEEc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEA---VERLGAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~---~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      ++||+.++=+|+|+ |..+++++... ..+|+++++++++.+..   +++||.+  .++..+.++.+.... .+|.+|--
T Consensus        32 ~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~-~~daiFIG  109 (187)
T COG2242          32 PRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLP-SPDAIFIG  109 (187)
T ss_pred             CCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCC-CCCEEEEC
Confidence            68999888889864 77777888433 33999999998865443   4577865  344455555554332 69999965


Q ss_pred             CCCc--ccHHHHHhccccCCEEEEecC
Q 027668          114 VSAV--HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 ~g~~--~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      -|..  ..++.+|..|+++|++|.-..
T Consensus       110 Gg~~i~~ile~~~~~l~~ggrlV~nai  136 (187)
T COG2242         110 GGGNIEEILEAAWERLKPGGRLVANAI  136 (187)
T ss_pred             CCCCHHHHHHHHHHHcCcCCeEEEEee
Confidence            5432  347789999999999997544

>PRK08265 short chain dehydrogenase; Provisional

Probab=98.03  E-value=0.00015  Score=55.67  Aligned_cols=75  Identities=17%  Similarity=0.253  Sum_probs=55.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc--E-EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD--S-FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~--~-v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .+++++|.|+ |.+|..+++.+...|++|++++++.++.+++.++++..  . ..|-.+.+.+.+.       .+.+|++
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~l   84 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDIL   84 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4689999997 99999999999999999999999887777776666532  1 2344454433322       2478999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |.++|.
T Consensus        85 v~~ag~   90 (261)
T PRK08265         85 VNLACT   90 (261)
T ss_pred             EECCCC
Confidence            999875

>PRK06139 short chain dehydrogenase; Provisional

Probab=98.01  E-value=0.00014  Score=57.87  Aligned_cols=76  Identities=21%  Similarity=0.314  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCcE---EecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .+++++||.|+ |++|..+++.+...|++|+++++++++.+++.+   +.|.+.   ..|-.+.+.++++       .++
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            35689999997 999999999999999999999999887665544   335432   2355555544433       257


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        85 iD~lVnnAG~   94 (330)
T PRK06139         85 IDVWVNNVGV   94 (330)
T ss_pred             CCEEEECCCc
Confidence            9999999985

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=98.01  E-value=5.5e-05  Score=58.76  Aligned_cols=76  Identities=26%  Similarity=0.268  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      ++++++|+|+|+.|.+++..+...|+ +++++.|+.++.+.++++++... +......+........+|+||+|++..
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            57899999999999999999999998 89999999988888877765321 111111122223335799999998765

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.99  E-value=0.00022  Score=55.12  Aligned_cols=72  Identities=19%  Similarity=0.231  Sum_probs=52.8

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHh-------cCCccEEEEcC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------MGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~vid~~  114 (220)
                      +++||.|+ |.+|..+++.+...|++|++++++.++.+.+ ...+...+ .|..+.+.+.+.       .+++|++|+++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEAL-AAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            47899997 9999999999999999999999987766555 34454433 455555444322       24799999999


Q ss_pred             CC
Q 027668          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      |.
T Consensus        81 g~   82 (274)
T PRK05693         81 GY   82 (274)
T ss_pred             CC
Confidence            85

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.96  E-value=6.7e-05  Score=57.88  Aligned_cols=86  Identities=20%  Similarity=0.326  Sum_probs=60.6

Q ss_pred             hhhhhhhHhcc--CCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcE----EecCCCHHHH
Q 027668           28 ITVYSPLRFYG--LDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADS----FLVSRDQDEM  100 (220)
Q Consensus        28 ~ta~~~l~~~~--~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~----v~~~~~~~~~  100 (220)
                      ...+.+|....  ...+|++++|+|+|+.+.+++.-++..|+ +++++.|+.++.+++++.++...    .....+.+..
T Consensus       109 ~G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~  188 (283)
T COG0169         109 IGFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGL  188 (283)
T ss_pred             HHHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccc
Confidence            33344555432  23468999999999999999999999997 89999999999888887777422    1111111110


Q ss_pred             HHhcCCccEEEEcCCCc
Q 027668          101 QAAMGTMDGIIDTVSAV  117 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~  117 (220)
                          ..+|++|+|++..
T Consensus       189 ----~~~dliINaTp~G  201 (283)
T COG0169         189 ----EEADLLINATPVG  201 (283)
T ss_pred             ----cccCEEEECCCCC
Confidence                0489999998664

>PRK06500 short chain dehydrogenase; Provisional

Probab=97.95  E-value=0.00022  Score=54.11  Aligned_cols=75  Identities=20%  Similarity=0.325  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE---ecCCCHHHHH-------HhcCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQ-------AAMGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~-------~~~~~~d~v  110 (220)
                      ++++++|.|+ |.+|..+++.+...|++|+++++++++.+.+.++++....   .|..+.+.+.       +..+++|++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAV   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4678999997 9999999999999999999999987766666566664321   2333333222       222478999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |.++|.
T Consensus        85 i~~ag~   90 (249)
T PRK06500         85 FINAGV   90 (249)
T ss_pred             EECCCC
Confidence            999875

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.94  E-value=0.00031  Score=56.95  Aligned_cols=113  Identities=25%  Similarity=0.206  Sum_probs=73.1

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-CcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~  100 (220)
                      .+..+....+..+.....+++|++||.+|+| .|..+..+++..|++|+.++.+++..+.+.+... ...-+...+   .
T Consensus       147 ~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D---~  222 (383)
T PRK11705        147 TLEEAQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQD---Y  222 (383)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECc---h
Confidence            3444444445444344447899999999997 4777888888889999999999887777654432 111111111   1


Q ss_pred             HHhcCCccEEEEc-----CCCc---ccHHHHHhccccCCEEEEecC
Q 027668          101 QAAMGTMDGIIDT-----VSAV---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       101 ~~~~~~~d~vid~-----~g~~---~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ....+.||.|+..     +|..   ..++.+.+.|+|+|.+++...
T Consensus       223 ~~l~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        223 RDLNGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             hhcCCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            1223479988743     3331   246678889999999987643

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.93  E-value=0.00028  Score=54.24  Aligned_cols=75  Identities=15%  Similarity=0.228  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCc---EEecCCCHHHHHHh------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GAD---SFLVSRDQDEMQAA------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~------~~~~  107 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.++.+.+.+++    +..   ...|-.+.+.++++      .+++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            4789999997 89999999999999999999999877766554433    321   12344444433322      1479


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++++++|.
T Consensus        87 D~lv~nag~   95 (263)
T PRK08339         87 DIFFFSTGG   95 (263)
T ss_pred             cEEEECCCC
Confidence            999999875

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.93  E-value=0.00018  Score=50.63  Aligned_cols=105  Identities=22%  Similarity=0.272  Sum_probs=67.6

Q ss_pred             hhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHhcCCccE
Q 027668           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~  109 (220)
                      .++.....-.++.+++|+|+|.+|...++.+...| .++++++++.++.+.+.++++... .....+   ..+..+++|+
T Consensus         8 ~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv   84 (155)
T cd01065           8 RALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLD---LEELLAEADL   84 (155)
T ss_pred             HHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecc---hhhccccCCE
Confidence            34444332145688999999999999999988886 589999998887777767766431 011111   1222458999


Q ss_pred             EEEcCCCccc----HHHHHhccccCCEEEEecCC
Q 027668          110 IIDTVSAVHP----LMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       110 vid~~g~~~~----~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ||.|++....    .......++++..++.++..
T Consensus        85 vi~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~~  118 (155)
T cd01065          85 IINTTPVGMKPGDELPLPPSLLKPGGVVYDVVYN  118 (155)
T ss_pred             EEeCcCCCCCCCCCCCCCHHHcCCCCEEEEcCcC
Confidence            9999987632    11122345666666666543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.93  E-value=0.0001  Score=56.29  Aligned_cols=128  Identities=23%  Similarity=0.268  Sum_probs=74.4

Q ss_pred             cCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHH
Q 027668            4 DEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA   82 (220)
Q Consensus         4 ~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~   82 (220)
                      +...++++++++++..+. .+.+. .....+...  +.++++||-+|+|+ |..++.+++ .|+ +|+.++.++...+.+
T Consensus        85 ~~~~~i~i~p~~afgtg~-h~tt~-~~l~~l~~~--~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDis~~~l~~A  158 (250)
T PRK00517         85 PDEINIELDPGMAFGTGT-HPTTR-LCLEALEKL--VLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDIDPQAVEAA  158 (250)
T ss_pred             CCeEEEEECCCCccCCCC-CHHHH-HHHHHHHhh--cCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEECCHHHHHHH
Confidence            345566777777665543 11111 112223222  46889999999987 877776554 677 699999998877666


Q ss_pred             HHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc---ccHHHHHhccccCCEEEEecCCC
Q 027668           83 VERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        83 ~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~---~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+.+....+ . .... +..-...||+|+-.....   ..+..+.+.|+++|.+++.|...
T Consensus       159 ~~n~~~~~~-~-~~~~-~~~~~~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~  216 (250)
T PRK00517        159 RENAELNGV-E-LNVY-LPQGDLKADVIVANILANPLLELAPDLARLLKPGGRLILSGILE  216 (250)
T ss_pred             HHHHHHcCC-C-ceEE-EccCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence            443321111 0 0000 000001589998655433   12456788899999999976543

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=0.00019  Score=55.39  Aligned_cols=96  Identities=17%  Similarity=0.284  Sum_probs=71.9

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcCch-HHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~-~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+..+....++...---.|++|+|+|.|. +|.-++.++...|+.|++..+...                     .+
T Consensus       137 ~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l  195 (286)
T PRK14175        137 FVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DM  195 (286)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hH
Confidence            46776666666676654335789999999854 999999999999999998876421                     12


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+....+|+||.++|.+..+..  +.++++..++.+|...
T Consensus       196 ~~~~~~ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~  233 (286)
T PRK14175        196 ASYLKDADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP  233 (286)
T ss_pred             HHHHhhCCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence            3344578999999999875554  4578888888888754

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.92  E-value=0.00033  Score=54.05  Aligned_cols=75  Identities=21%  Similarity=0.352  Sum_probs=55.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-CcE-EecCCCHHHHH-------HhcCCccEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADS-FLVSRDQDEMQ-------AAMGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~~~-v~~~~~~~~~~-------~~~~~~d~vi  111 (220)
                      .+.++||.|+ |++|..+++.+...|++|+++++++++.+.+.+.++ ... ..|-.+.+.+.       +..+++|++|
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLV   83 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3578999997 999999999988999999999998887766655555 322 23555544332       2234799999


Q ss_pred             EcCCC
Q 027668          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      .++|.
T Consensus        84 ~~ag~   88 (273)
T PRK07825         84 NNAGV   88 (273)
T ss_pred             ECCCc
Confidence            99885

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.91  E-value=0.00017  Score=55.45  Aligned_cols=76  Identities=29%  Similarity=0.354  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++++|.|+ |.+|..+++.+...|++|+++++++++.+...+++   +...   ..|..+.+.+.+.       .++
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~   86 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP   86 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999997 99999999999999999999998876554443332   2221   2344454444332       236


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        87 iD~vi~~ag~   96 (264)
T PRK07576         87 IDVLVSGAAG   96 (264)
T ss_pred             CCEEEECCCC
Confidence            8999998863

>PRK06484 short chain dehydrogenase; Validated

Probab=97.90  E-value=0.00026  Score=59.85  Aligned_cols=99  Identities=19%  Similarity=0.283  Sum_probs=70.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.++++...   ..|-.+.+.++++       .+.+|++
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l  347 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVL  347 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5788999997 999999999999999999999998887777766666432   2344454433322       2479999


Q ss_pred             EEcCCCcc--------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          111 IDTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 id~~g~~~--------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      |.++|...                          ..+.++..++.+|+++.+++..
T Consensus       348 i~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~  403 (520)
T PRK06484        348 VNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIA  403 (520)
T ss_pred             EECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            99987531                          1233345556679999887654

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.90  E-value=0.00017  Score=56.25  Aligned_cols=76  Identities=14%  Similarity=0.318  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCc---ccHHHHHHHcCC---c---EEecCCCHHHHHHhcCCccEE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP---SKKSEAVERLGA---D---SFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~---~~~~~~~~~~g~---~---~v~~~~~~~~~~~~~~~~d~v  110 (220)
                      ..+++++|+|+|++|.+++..+...|+ +|+++.++.   ++.+++.+++..   .   ...+..+.+.+.+....+|++
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Dil  203 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDIL  203 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEE
Confidence            357899999999999999998889999 599999986   455555454421   1   122333333444444578999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+|+.-
T Consensus       204 INaTp~  209 (289)
T PRK12548        204 VNATLV  209 (289)
T ss_pred             EEeCCC
Confidence            998854

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.89  E-value=0.00029  Score=56.16  Aligned_cols=75  Identities=19%  Similarity=0.305  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      ++++++|.|+ |.+|..+++.+...|++|+++++++++.+++.+   ..|...   ..|..+.+.+++.       .+++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i   86 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI   86 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            4678999997 999999999999999999999998876655433   334332   2355555444332       2479


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        87 D~lInnAg~   95 (334)
T PRK07109         87 DTWVNNAMV   95 (334)
T ss_pred             CEEEECCCc
Confidence            999999985

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.89  E-value=4.7e-05  Score=63.46  Aligned_cols=77  Identities=22%  Similarity=0.393  Sum_probs=55.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc--------------------cHHHHHHHcCCcEEecCCC-HH-H
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS--------------------KKSEAVERLGADSFLVSRD-QD-E   99 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~--------------------~~~~~~~~~g~~~v~~~~~-~~-~   99 (220)
                      ++++|+|+|+|+.|+.++..++..|.+|++..+.+.                    +..+..+++|++..++..- .+ .
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~  219 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDIS  219 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccC
Confidence            578999999999999999999999999998887642                    1223346788765544321 11 1


Q ss_pred             HHHhcCCccEEEEcCCCcc
Q 027668          100 MQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus       100 ~~~~~~~~d~vid~~g~~~  118 (220)
                      +.....++|.||.++|...
T Consensus       220 ~~~~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       220 LDDLLEDYDAVFLGVGTYR  238 (467)
T ss_pred             HHHHHhcCCEEEEEeCCCC
Confidence            2223347999999999864

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.89  E-value=0.00012  Score=59.68  Aligned_cols=91  Identities=19%  Similarity=0.245  Sum_probs=64.5

Q ss_pred             EEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc-C--C-cEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL-G--A-DSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~-g--~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      |+|+|+|.+|..+++.+...+.  ++++.+++.++.+.+.+++ +  . ...+|..+.+.+.++..+.|+||+|+|....
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~   80 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFG   80 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchh
Confidence            6899999999999999887764  8999999999877776542 2  2 2345666777788888889999999998743


Q ss_pred             HHHHHhccccCCEEEEe
Q 027668          120 LMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~  136 (220)
                      ...+-.+++.+-.++..
T Consensus        81 ~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   81 EPVARACIEAGVHYVDT   97 (386)
T ss_dssp             HHHHHHHHHHT-EEEES
T ss_pred             HHHHHHHHHhCCCeecc
Confidence            44455567778888873

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.86  E-value=0.00017  Score=54.61  Aligned_cols=76  Identities=21%  Similarity=0.381  Sum_probs=57.6

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhc---CCccEEEEcCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAM---GTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~---~~~d~vid~~g  115 (220)
                      .++++++|.|+ |.+|..+++.+...|++|++++++.++.+++.+..+...+ .|..+.+.+.+..   +++|++|.++|
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag   86 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAG   86 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCC
Confidence            35689999997 8999999999999999999999988777666555565432 3555555444433   36899999997


Q ss_pred             C
Q 027668          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        87 ~   87 (245)
T PRK07060         87 I   87 (245)
T ss_pred             C
Confidence            5

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.85  E-value=0.00013  Score=56.63  Aligned_cols=110  Identities=23%  Similarity=0.294  Sum_probs=68.3

Q ss_pred             hhhhhhhhhhHh-ccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHH
Q 027668           25 CAGITVYSPLRF-YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQA  102 (220)
Q Consensus        25 ~~~~ta~~~l~~-~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~  102 (220)
                      .-+.....++.. ...-..+.+++|+|+|.+|.+++..+...|+ +|+++.++.++.+.+.++++....+.. +. ...+
T Consensus       104 TD~~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~-~~~~  181 (278)
T PRK00258        104 TDGIGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-DL-ELQE  181 (278)
T ss_pred             ccHHHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-cc-cchh
Confidence            333444445543 2222456889999999999999999999995 999999998887777666653210111 00 1112


Q ss_pred             hcCCccEEEEcCCCcccH-----HHHHhccccCCEEEEe
Q 027668          103 AMGTMDGIIDTVSAVHPL-----MPLIGLLKSQGKLVLL  136 (220)
Q Consensus       103 ~~~~~d~vid~~g~~~~~-----~~~~~~l~~~g~iv~~  136 (220)
                      ...++|+||+|++....-     ......++++..++.+
T Consensus       182 ~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~Di  220 (278)
T PRK00258        182 ELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDM  220 (278)
T ss_pred             ccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence            235799999998764210     1123445555555544

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00044  Score=53.11  Aligned_cols=76  Identities=18%  Similarity=0.248  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc-E--EecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD-S--FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~--v~~~~~~~~~~~~-------~~~  106 (220)
                      .++.++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+.+   +.. .  ..|..+.+.+.+.       .++
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR   87 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35789999997 89999999999999999999999877655544332   321 1  2344555444322       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        88 id~vi~~Ag~   97 (263)
T PRK07814         88 LDIVVNNVGG   97 (263)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.85  E-value=0.00032  Score=53.27  Aligned_cols=76  Identities=21%  Similarity=0.278  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHHhc-------CC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~-------~~  106 (220)
                      .++++++|.|+ |.+|+.++..+...|++++++++++++.+...+++   +..   ...|-.+.+.+.++.       ++
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35789999997 99999999999999999999988877655443332   322   122444544433222       47


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        85 id~vi~~ag~   94 (250)
T PRK12939         85 LDGLVNNAGI   94 (250)
T ss_pred             CCEEEECCCC
Confidence            9999999986

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.84  E-value=0.00092  Score=49.31  Aligned_cols=115  Identities=14%  Similarity=0.066  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      -.|.+|||+|+|.+|...++.+...|++|+++.+... ....+.+. +. ..+.....+  .....++|+||-|++.+. 
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~-~~-i~~~~~~~~--~~~l~~adlViaaT~d~e-   82 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEE-GK-IRWKQKEFE--PSDIVDAFLVIAATNDPR-   82 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhC-CC-EEEEecCCC--hhhcCCceEEEEcCCCHH-
Confidence            3578999999999999999999999999998876432 22233222 21 112121111  112348999999999985 


Q ss_pred             HHHHHhccccCCEEEEecCCCCCcccCccccc-cCCcEEEEe
Q 027668          120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL-TGEKIVGGS  160 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~-~~~~~i~~~  160 (220)
                      ++..+......+.++.........+|-.+..+ ...+++.-+
T Consensus        83 lN~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIs  124 (202)
T PRK06718         83 VNEQVKEDLPENALFNVITDAESGNVVFPSALHRGKLTISVS  124 (202)
T ss_pred             HHHHHHHHHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEE
Confidence            55544444445667666554444444444333 345665544

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.84  E-value=0.00041  Score=52.66  Aligned_cols=75  Identities=19%  Similarity=0.262  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC--C--c-EEecCCCHHHHHHh-------cCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG--A--D-SFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g--~--~-~v~~~~~~~~~~~~-------~~~~d  108 (220)
                      ++.++||.|+ |.+|..+++.+...|++|+++++++++.+.+...+.  .  . ...|..+.+.+...       .+++|
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   83 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSVD   83 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4578999997 999999999999999999999999877665544433  1  1 12244444444322       23789


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|.++|.
T Consensus        84 ~vi~~ag~   91 (251)
T PRK07231         84 ILVNNAGT   91 (251)
T ss_pred             EEEECCCC
Confidence            99999876

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.84  E-value=0.00031  Score=52.96  Aligned_cols=75  Identities=24%  Similarity=0.323  Sum_probs=53.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC----CcEE-ecCCCHHHHHHh-------cCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----ADSF-LVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g----~~~v-~~~~~~~~~~~~-------~~~~d  108 (220)
                      ++.+++|.|+ |.+|..+++.+...|++|+++++++++.+++.+++.    ...+ .|..+.+.+.+.       .+++|
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD   84 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4688999997 999999999888899999999998876666555443    1211 244444333221       23799


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|.+.|.
T Consensus        85 ~vi~~ag~   92 (237)
T PRK07326         85 VLIANAGV   92 (237)
T ss_pred             EEEECCCC
Confidence            99999875

>PRK06196 oxidoreductase; Provisional

Probab=97.83  E-value=0.00049  Score=54.39  Aligned_cols=75  Identities=23%  Similarity=0.303  Sum_probs=54.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-CcE-EecCCCHHHHHHhc-------CCccEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADS-FLVSRDQDEMQAAM-------GTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~~~-v~~~~~~~~~~~~~-------~~~d~vi  111 (220)
                      .+.+++|.|+ |.+|..+++.+...|++|++++++.++.+++.+++. ... ..|-.+.+.++++.       +++|++|
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~li  104 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDILI  104 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            5689999997 999999999999999999999998877666544443 221 23445554443322       4799999


Q ss_pred             EcCCC
Q 027668          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      .++|.
T Consensus       105 ~nAg~  109 (315)
T PRK06196        105 NNAGV  109 (315)
T ss_pred             ECCCC
Confidence            99874

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.83  E-value=0.0001  Score=57.25  Aligned_cols=86  Identities=20%  Similarity=0.317  Sum_probs=58.1

Q ss_pred             hhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCC----cEEecCCCHHHHHH
Q 027668           28 ITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA----DSFLVSRDQDEMQA  102 (220)
Q Consensus        28 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~----~~v~~~~~~~~~~~  102 (220)
                      ...+.+++....-..+.+|+|+|+|++|.+++..+...|+ ++++++++.++.+.+++.++.    ..+....   ...+
T Consensus       112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~---~~~~  188 (284)
T PRK12549        112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGS---DLAA  188 (284)
T ss_pred             HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEecc---chHh
Confidence            3334445432212456899999999999999999999998 899999998888777666531    1222211   1222


Q ss_pred             hcCCccEEEEcCCC
Q 027668          103 AMGTMDGIIDTVSA  116 (220)
Q Consensus       103 ~~~~~d~vid~~g~  116 (220)
                      ....+|+||+|+..
T Consensus       189 ~~~~aDiVInaTp~  202 (284)
T PRK12549        189 ALAAADGLVHATPT  202 (284)
T ss_pred             hhCCCCEEEECCcC
Confidence            33579999999643

>PRK06484 short chain dehydrogenase; Validated

Probab=97.83  E-value=0.00046  Score=58.40  Aligned_cols=76  Identities=22%  Similarity=0.377  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccE
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~  109 (220)
                      .+++++||.|+ +++|.++++.+...|++|++++++.++.+.+.++++..   ...|..+.+.++++       .+++|+
T Consensus         3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            35789999997 89999999999999999999999988877776777643   22455555443322       247999


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|+++|.
T Consensus        83 li~nag~   89 (520)
T PRK06484         83 LVNNAGV   89 (520)
T ss_pred             EEECCCc
Confidence            9999875

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.83  E-value=0.00015  Score=56.76  Aligned_cols=75  Identities=24%  Similarity=0.349  Sum_probs=57.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC--cEE---ecCCCHHHHHHh-------cCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSF---LVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~--~~v---~~~~~~~~~~~~-------~~~~d  108 (220)
                      +++++||.|+ |++|..+++.+...|++|++++++.++.+.+.++++.  ...   .|-.+.+.+.+.       .+.+|
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   87 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID   87 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999997 9999999999999999999999998887777666652  211   355554433322       24799


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|+++|.
T Consensus        88 ~vI~nAG~   95 (296)
T PRK05872         88 VVVANAGI   95 (296)
T ss_pred             EEEECCCc
Confidence            99999986

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.81  E-value=0.00038  Score=57.81  Aligned_cols=75  Identities=17%  Similarity=0.259  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc--ccHHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP--SKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~--~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +++++||.|+ |.+|..+++.+...|++|++++++.  ++.+.+.++++... ..|..+.+.+.++       .+++|++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~v  288 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIV  288 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            5789999997 9999999999999999999988743  23444444556432 2355555443322       2368999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |.++|.
T Consensus       289 i~~AG~  294 (450)
T PRK08261        289 VHNAGI  294 (450)
T ss_pred             EECCCc
Confidence            999984

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.79  E-value=0.0006  Score=52.82  Aligned_cols=99  Identities=17%  Similarity=0.218  Sum_probs=66.1

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCc---ccHHHHHHHcCCcE--EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSP---SKKSEAVERLGADS--FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~---~~~~~~~~~~g~~~--v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+   +++|+++++.+...|++|+++.++.   ++.+.+.++++...  ..|-.+.+.+.++       .+.
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~   83 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGK   83 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            4689999996   4899999999999999999988874   23344444555322  2355554433322       247


Q ss_pred             ccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          107 MDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~vid~~g~~~-----------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +|++|+++|...                             ..+..+..++++|+++.++...
T Consensus        84 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~  146 (274)
T PRK08415         84 IDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLG  146 (274)
T ss_pred             CCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCC
Confidence            999999998420                             1234555667789999887643

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.79  E-value=6.1e-05  Score=53.91  Aligned_cols=96  Identities=22%  Similarity=0.283  Sum_probs=64.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecC------------------CC--HHHHHHh
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS------------------RD--QDEMQAA  103 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~------------------~~--~~~~~~~  103 (220)
                      .+|+|+|+|.+|+.++++++.+|+++++.+...++.+.. +..+...+...                  ..  ...+.+.
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~   99 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQL-ESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEF   99 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH-HHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh-hcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHH
Confidence            789999999999999999999999999999988776666 55565433221                  01  1223333


Q ss_pred             cCCccEEEEcCCCc-----c-cHHHHHhccccCCEEEEecCCC
Q 027668          104 MGTMDGIIDTVSAV-----H-PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       104 ~~~~d~vid~~g~~-----~-~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ...+|++|.+.-.+     . .-+..++.|+++..++.+....
T Consensus       100 i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~  142 (168)
T PF01262_consen  100 IAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQ  142 (168)
T ss_dssp             HHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGG
T ss_pred             HhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecC
Confidence            34789999643221     1 2346778899999999887643

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.79  E-value=9.9e-05  Score=54.59  Aligned_cols=101  Identities=31%  Similarity=0.359  Sum_probs=63.6

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHH---HHcCCcEE-ecCCCHHHHHHhcCCc
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAV---ERLGADSF-LVSRDQDEMQAAMGTM  107 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~---~~~g~~~v-~~~~~~~~~~~~~~~~  107 (220)
                      ++... ++||++||-+|+|+ |..++-+++..|.  +|+.+...++-.+.+.   +.+|...+ +...+-.........|
T Consensus        65 l~~L~-l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~apf  142 (209)
T PF01135_consen   65 LEALD-LKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEEAPF  142 (209)
T ss_dssp             HHHTT-C-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG-SE
T ss_pred             HHHHh-cCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccCCCc
Confidence            44444 89999999999874 8888888888775  6888888876444433   34454321 2122211111112379


Q ss_pred             cEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668          108 DGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       108 d~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      |.++-+.+....-...++.|++||++|..
T Consensus       143 D~I~v~~a~~~ip~~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  143 DRIIVTAAVPEIPEALLEQLKPGGRLVAP  171 (209)
T ss_dssp             EEEEESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred             CEEEEeeccchHHHHHHHhcCCCcEEEEE
Confidence            99998887776567889999999999974

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.79  E-value=0.00078  Score=52.09  Aligned_cols=75  Identities=17%  Similarity=0.209  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCc---hHHHHHHHHHHHCCCeEEEEeCCccc---HHHHHHHcCCcE--EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGLG---GLGHVAVKFAKAMGVKVTVISTSPSK---KSEAVERLGADS--FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~g---~~G~~~~~~~~~~g~~v~~~~~~~~~---~~~~~~~~g~~~--v~~~~~~~~~~~~-------~~~  106 (220)
                      +++++||.|++   ++|.++++.+...|++|+++.++++.   .+++.++.|...  ..|-.+.+.++++       .+.
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK   85 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            56889999974   89999999999999999998876432   233333445322  2344554433322       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        86 iD~lVnnAG~   95 (271)
T PRK06505         86 LDFVVHAIGF   95 (271)
T ss_pred             CCEEEECCcc
Confidence            9999999874

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.78  E-value=0.00026  Score=46.28  Aligned_cols=91  Identities=21%  Similarity=0.212  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  121 (220)
                      .|.+|||+|+|.+|..-++.+...|++|++++...   ... +  +.-..... .   .+....++++||-+.+....-+
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~-~--~~i~~~~~-~---~~~~l~~~~lV~~at~d~~~n~   75 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFS-E--GLIQLIRR-E---FEEDLDGADLVFAATDDPELNE   75 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHH-H--TSCEEEES-S----GGGCTTESEEEE-SS-HHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhh-h--hHHHHHhh-h---HHHHHhhheEEEecCCCHHHHH
Confidence            57899999999999999999999999999999886   111 1  22222211 1   1233468999999999986445


Q ss_pred             HHHhccccCCEEEEecCCCCC
Q 027668          122 PLIGLLKSQGKLVLLGAPEKP  142 (220)
Q Consensus       122 ~~~~~l~~~g~iv~~g~~~~~  142 (220)
                      ......+..|.++........
T Consensus        76 ~i~~~a~~~~i~vn~~D~p~~   96 (103)
T PF13241_consen   76 AIYADARARGILVNVVDDPEL   96 (103)
T ss_dssp             HHHHHHHHTTSEEEETT-CCC
T ss_pred             HHHHHHhhCCEEEEECCCcCC
Confidence            566666778999988765543

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.78  E-value=0.00072  Score=52.35  Aligned_cols=76  Identities=18%  Similarity=0.222  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+..+..   ...|..+.+.+.+.       .+++|++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~v   82 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVL   82 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            3578999997 99999999999999999999999887766654433321   12344454443322       1368999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      |.++|..
T Consensus        83 v~~ag~~   89 (277)
T PRK06180         83 VNNAGYG   89 (277)
T ss_pred             EECCCcc
Confidence            9998863

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.77  E-value=0.0002  Score=56.85  Aligned_cols=94  Identities=17%  Similarity=0.241  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcCchHHHHHHHHH-HHCCC-eEEEEeCCcccHHHHHHHc----CCcEEecCCCHHHHHHhcCCccEEEEcC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFA-KAMGV-KVTVISTSPSKKSEAVERL----GADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~-~~~g~-~v~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      ...++++|+|+|..|...+..+ ...++ +|.++++++++.+.+.+++    +.... ...+   .++...+.|+|+.|+
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~-~~~~---~~~~~~~aDiVi~aT  200 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIY-VVNS---ADEAIEEADIIVTVT  200 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEE-EeCC---HHHHHhcCCEEEEcc
Confidence            4557899999999998777654 45677 8889999988877776544    43322 1222   223335799999999


Q ss_pred             CCcccHHHHHhccccCCEEEEecCCC
Q 027668          115 SAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       115 g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +..+.+- . ..+++|-++..+|...
T Consensus       201 ~s~~p~i-~-~~l~~G~hV~~iGs~~  224 (325)
T PRK08618        201 NAKTPVF-S-EKLKKGVHINAVGSFM  224 (325)
T ss_pred             CCCCcch-H-HhcCCCcEEEecCCCC
Confidence            8875433 4 8889999999998864

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.77  E-value=0.00063  Score=50.11  Aligned_cols=81  Identities=22%  Similarity=0.158  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc-CCccEEEEcCCCccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-GTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~-~~~d~vid~~g~~~~  119 (220)
                      -.|.+++|+|.|.+|..+++.+...|++|++.+.+.++.+.+.+.+|+..+ +..      ++. ..+|+++.|+.....
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~------~l~~~~~Dv~vp~A~~~~I   98 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APE------EIYSVDADVFAPCALGGVI   98 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cch------hhccccCCEEEeccccccc
Confidence            467899999999999999999999999999999888877777666675533 221      111 268888877654433


Q ss_pred             HHHHHhccc
Q 027668          120 LMPLIGLLK  128 (220)
Q Consensus       120 ~~~~~~~l~  128 (220)
                      -...++.++
T Consensus        99 ~~~~~~~l~  107 (200)
T cd01075          99 NDDTIPQLK  107 (200)
T ss_pred             CHHHHHHcC
Confidence            344555554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=97.77  E-value=0.00044  Score=53.84  Aligned_cols=86  Identities=15%  Similarity=0.249  Sum_probs=54.4

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcc---cHHHHHHHcCCc-----EEecCCCHHHHH
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS---KKSEAVERLGAD-----SFLVSRDQDEMQ  101 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~---~~~~~~~~~g~~-----~v~~~~~~~~~~  101 (220)
                      ..+|+....-.++++++|+|+|+.+.+++..+...|+ +++++.|+.+   +.+.++++++..     .+....+.+.+.
T Consensus       112 ~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~  191 (288)
T PRK12749        112 IRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFA  191 (288)
T ss_pred             HHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhh
Confidence            4445443322366899999999889988887778898 8999999853   556665655421     122211111222


Q ss_pred             HhcCCccEEEEcCCC
Q 027668          102 AAMGTMDGIIDTVSA  116 (220)
Q Consensus       102 ~~~~~~d~vid~~g~  116 (220)
                      +....+|+||+|+.-
T Consensus       192 ~~~~~aDivINaTp~  206 (288)
T PRK12749        192 EALASADILTNGTKV  206 (288)
T ss_pred             hhcccCCEEEECCCC
Confidence            233479999998854

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.76  E-value=0.00025  Score=61.44  Aligned_cols=77  Identities=22%  Similarity=0.317  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc--------------------cHHHHHHHcCCcEEecCCC-HH-H
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS--------------------KKSEAVERLGADSFLVSRD-QD-E   99 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~--------------------~~~~~~~~~g~~~v~~~~~-~~-~   99 (220)
                      .+++|+|+|+|+.|+.++..++..|.+|+++.+.+.                    ...+..+++|++..++..- .+ .
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~  388 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT  388 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCC
Confidence            489999999999999999999999999999987753                    1223446778765554431 11 2


Q ss_pred             HHHhcCCccEEEEcCCCcc
Q 027668          100 MQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus       100 ~~~~~~~~d~vid~~g~~~  118 (220)
                      +.++..++|.||.++|...
T Consensus       389 ~~~l~~~~DaV~latGa~~  407 (639)
T PRK12809        389 FSDLTSEYDAVFIGVGTYG  407 (639)
T ss_pred             HHHHHhcCCEEEEeCCCCC
Confidence            3334458999999999853

>PRK09242 tropinone reductase; Provisional

Probab=97.76  E-value=0.00072  Score=51.69  Aligned_cols=75  Identities=13%  Similarity=0.250  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-----CCcE---EecCCCHHHHHH-------hcC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GADS---FLVSRDQDEMQA-------AMG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-----g~~~---v~~~~~~~~~~~-------~~~  105 (220)
                      .+++++|.|+ |.+|..+++.+...|++|++++++.++.+++..++     +...   ..|..+.+.+.+       ..+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999997 99999999999999999999999887665554433     2211   124444433322       224


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|.++|.
T Consensus        88 ~id~li~~ag~   98 (257)
T PRK09242         88 GLHILVNNAGG   98 (257)
T ss_pred             CCCEEEECCCC
Confidence            79999999986

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.76  E-value=0.00032  Score=53.54  Aligned_cols=75  Identities=21%  Similarity=0.277  Sum_probs=55.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHhc-------CCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAM-------GTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~-------~~~d~vid  112 (220)
                      +|++|+|.|+ |.+|..+++.+...|++|+++++++.+.+...++++... ..|..+.+.+++..       +++|++|.
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   85 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFN   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5789999997 999999999999999999999998776666555555432 23555554443222       37899999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        86 ~ag~   89 (255)
T PRK06057         86 NAGI   89 (255)
T ss_pred             CCCc
Confidence            9875

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.76  E-value=0.0018  Score=45.72  Aligned_cols=113  Identities=15%  Similarity=0.062  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -.|.+|+|+|+|.+|..-++.+...|++|++++  ++..+++ ++++...+ .....+  .....++|+||-+++... .
T Consensus        11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l-~~l~~i~~-~~~~~~--~~dl~~a~lViaaT~d~e-~   83 (157)
T PRK06719         11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEM-KELPYITW-KQKTFS--NDDIKDAHLIYAATNQHA-V   83 (157)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHH-HhccCcEE-EecccC--hhcCCCceEEEECCCCHH-H
Confidence            467899999999999999999999999999884  3333444 33543222 121111  111248999999998885 5


Q ss_pred             HHHHhccccCCEEEEecCCCCCcccCccc-cccCCcEEEEe
Q 027668          121 MPLIGLLKSQGKLVLLGAPEKPLELPAFP-LLTGEKIVGGS  160 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~~~~~~~~~~~~-~~~~~~~i~~~  160 (220)
                      +..+...++.+.++.........++-.+. +-..++++.-+
T Consensus        84 N~~i~~~a~~~~~vn~~d~~~~~~f~~pa~v~~~~l~iais  124 (157)
T PRK06719         84 NMMVKQAAHDFQWVNVVSDGTESSFHTPGVIRNDEYVVTIS  124 (157)
T ss_pred             HHHHHHHHHHCCcEEECCCCCcCcEEeeeEEEECCeEEEEE
Confidence            55444444334455443333323333332 33445666544

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.76  E-value=0.00049  Score=54.37  Aligned_cols=96  Identities=24%  Similarity=0.239  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHH---HHcCCcEEe-cCCCH-HHHHHhcCCccEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAV---ERLGADSFL-VSRDQ-DEMQAAMGTMDGII  111 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~---~~~g~~~v~-~~~~~-~~~~~~~~~~d~vi  111 (220)
                      .++++++||.+|+| +|..++.+++..+.  .|+.++.+++..+.+.   ++.|.+.+. ...+. +.... .+.||+|+
T Consensus        77 ~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~-~~~fD~Ii  154 (322)
T PRK13943         77 GLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE-FAPYDVIF  154 (322)
T ss_pred             CCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc-cCCccEEE
Confidence            36889999999998 49999999998764  6899999887554443   345554222 11121 11111 13799999


Q ss_pred             EcCCCcccHHHHHhccccCCEEEEe
Q 027668          112 DTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       112 d~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      .+.+.........+.++++|+++..
T Consensus       155 ~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        155 VTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             ECCchHHhHHHHHHhcCCCCEEEEE
Confidence            9888765566788899999998764

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=97.75  E-value=0.00083  Score=45.09  Aligned_cols=97  Identities=19%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHH---HcCCc--EEecCCCHHHHHHhcCCccEEEEc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      +.++++|+-+|+|. |..+..+++..+ .+++.++.++...+.+.+   .++..  .++..+-........+.+|.|+-.
T Consensus        17 ~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~   95 (124)
T TIGR02469        17 LRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIG   95 (124)
T ss_pred             CCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEEC
Confidence            56788999999986 888888888875 599999998876655432   34432  122211111111222479999976


Q ss_pred             CCCcc---cHHHHHhccccCCEEEEec
Q 027668          114 VSAVH---PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       114 ~g~~~---~~~~~~~~l~~~g~iv~~g  137 (220)
                      .+...   .++.+.+.|+++|.+++..
T Consensus        96 ~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        96 GSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            54322   4677888999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.75  E-value=0.00036  Score=58.54  Aligned_cols=74  Identities=18%  Similarity=0.209  Sum_probs=55.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      +.++++|+|+|.|.+|++++++++..|++|++.+..+.+.+.+ +++|+..+......+.+    ..+|+||.+.|-+.
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l-~~~g~~~~~~~~~~~~l----~~~D~VV~SpGi~~   82 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPH-AERGVATVSTSDAVQQI----ADYALVVTSPGFRP   82 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HhCCCEEEcCcchHhHh----hcCCEEEECCCCCC
Confidence            4678999999999999999999999999999988776555444 56787543222222222    36899999998863

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.74  E-value=0.00049  Score=52.25  Aligned_cols=98  Identities=20%  Similarity=0.285  Sum_probs=62.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHH---HcCCc---EEecCCCHHHHHHhc-------CC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVE---RLGAD---SFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~---~~g~~---~v~~~~~~~~~~~~~-------~~  106 (220)
                      ++++++|.|+ |.+|..+++.+...|++|+++.++.+ +.+.+..   ..+..   ...|..+.+.+....       ++
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            4678999997 99999999999999999998888653 3333322   22322   123555554443221       36


Q ss_pred             ccEEEEcCCCcc-------------------cHHHHHhccccCCEEEEecCC
Q 027668          107 MDGIIDTVSAVH-------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~vid~~g~~~-------------------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      +|++|.++|...                   .++.+.+.++.+|+++.++..
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~  136 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSH  136 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCc
Confidence            899998876431                   223445555567888888653

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.72  E-value=0.00031  Score=53.77  Aligned_cols=77  Identities=19%  Similarity=0.316  Sum_probs=55.7

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc----EEecCCCHHHHHHh-------cCCcc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD----SFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~-------~~~~d  108 (220)
                      .++.++||.|+ |.+|..+++.+...|++|++++++++..+.+.+..+..    ...|..+.+.+.+.       .+++|
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   88 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLD   88 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            57789999997 99999999999999999999999877666554443322    22344454433322       24799


Q ss_pred             EEEEcCCCc
Q 027668          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~vid~~g~~  117 (220)
                      +||.++|..
T Consensus        89 ~vi~~ag~~   97 (264)
T PRK12829         89 VLVNNAGIA   97 (264)
T ss_pred             EEEECCCCC
Confidence            999998764

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.72  E-value=0.00034  Score=53.30  Aligned_cols=75  Identities=21%  Similarity=0.296  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-cEEecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      .+++++|.|+ |.+|..+++.+...|++|+++++++............ ....|-.+.+.+.+..+++|++|+++|.
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~   89 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGI   89 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence            4689999997 9999999999999999999998876221111111111 1223555566666666789999999986

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.71  E-value=0.0013  Score=50.74  Aligned_cols=72  Identities=22%  Similarity=0.309  Sum_probs=50.4

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc----EEecCCCHHHHHHh-------cCCccE
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD----SFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~----~v~~~~~~~~~~~~-------~~~~d~  109 (220)
                      +++|.|+ |++|..+++.+...|++|++++++++..+.+.++   .+..    ...|-.+.+.+.+.       .+++|+
T Consensus         2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   81 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDV   81 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            6899997 9999999999999999999999887665544333   2322    12355554433221       247899


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|.++|.
T Consensus        82 lv~~ag~   88 (272)
T PRK07832         82 VMNIAGI   88 (272)
T ss_pred             EEECCCC
Confidence            9999985

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.00081  Score=52.14  Aligned_cols=86  Identities=20%  Similarity=0.249  Sum_probs=60.9

Q ss_pred             hhhHhccCCCCCCEEEEEcCch-HHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEE
Q 027668           32 SPLRFYGLDKPGMHVGVVGLGG-LGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~-~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v  110 (220)
                      ..++...---.|++|+|+|+|. +|..++.++...|+.|++..+...   .                  +.+...++|++
T Consensus       148 ~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---~------------------L~~~~~~aDIv  206 (283)
T PRK14192        148 RLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---N------------------LPELVKQADII  206 (283)
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---h------------------HHHHhccCCEE
Confidence            3344444336789999999976 999999999999998877765321   1                  11222478999


Q ss_pred             EEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          111 IDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 id~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      |+++|.+..+.  .+.++++..++.+|...
T Consensus       207 I~AtG~~~~v~--~~~lk~gavViDvg~n~  234 (283)
T PRK14192        207 VGAVGKPELIK--KDWIKQGAVVVDAGFHP  234 (283)
T ss_pred             EEccCCCCcCC--HHHcCCCCEEEEEEEee
Confidence            99998775433  35588888888887643

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.70  E-value=0.00052  Score=53.30  Aligned_cols=75  Identities=19%  Similarity=0.324  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcC----CcEEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG----ADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      ..+++++|+|+|+.+.+++.-+...|+ +++++.++.++.+.+++.+.    ...+. ..+..........+|+|+||+.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~-~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV-GVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEE-ecCHhHHHHHHhhcCEEEEcCC
Confidence            357899999999999999998888998 89999999888777766553    11121 1111111222246899999986


Q ss_pred             C
Q 027668          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      -
T Consensus       204 ~  204 (283)
T PRK14027        204 M  204 (283)
T ss_pred             C
Confidence            4

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.70  E-value=0.00035  Score=54.01  Aligned_cols=106  Identities=22%  Similarity=0.139  Sum_probs=67.0

Q ss_pred             hhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC---cEEecCCCHHHHHHhc
Q 027668           28 ITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---DSFLVSRDQDEMQAAM  104 (220)
Q Consensus        28 ~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~  104 (220)
                      .....++.+.....++++++|+|+|++|.+++..+...|++|+++.++.++.+.+.++++.   ......   +.  ...
T Consensus       102 ~G~~~~l~~~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~---~~--~~~  176 (270)
T TIGR00507       102 IGLVSDLERLIPLRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSM---DE--LPL  176 (270)
T ss_pred             HHHHHHHHhcCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEech---hh--hcc
Confidence            3334445443333557899999999999999998888899999999998877776665542   122211   11  112


Q ss_pred             CCccEEEEcCCCcc--cHH---HHHhccccCCEEEEecC
Q 027668          105 GTMDGIIDTVSAVH--PLM---PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       105 ~~~d~vid~~g~~~--~~~---~~~~~l~~~g~iv~~g~  138 (220)
                      ..+|+||+|++...  ...   .....++++..++.+..
T Consensus       177 ~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y  215 (270)
T TIGR00507       177 HRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVY  215 (270)
T ss_pred             cCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEecc
Confidence            47899999997641  010   11234566666665544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.70  E-value=0.0013  Score=50.08  Aligned_cols=75  Identities=21%  Similarity=0.317  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~  107 (220)
                      +++++||.|+ |.+|..+++.+...|++|+++++++++.+.+..++   +..   ...|-.+.+.+.+.       .+++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4578999997 99999999999999999999999887665554333   322   12244454444322       2379


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        83 d~vi~~a~~   91 (258)
T PRK12429         83 DILVNNAGI   91 (258)
T ss_pred             CEEEECCCC
Confidence            999998875

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.69  E-value=0.0011  Score=51.19  Aligned_cols=77  Identities=16%  Similarity=0.216  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCc---ccHHHHHHHcCCc--EEecCCCHHHHHHh-------c
Q 027668           40 DKPGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSP---SKKSEAVERLGAD--SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        40 ~~~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~---~~~~~~~~~~g~~--~v~~~~~~~~~~~~-------~  104 (220)
                      ...++++||.|+   +++|.++++.+...|++|+++.+++   ++.+++.++++..  ...|-.+.+.++++       .
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   86 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW   86 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence            346789999986   5899999999999999998887653   3334444455532  22344444433322       2


Q ss_pred             CCccEEEEcCCC
Q 027668          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~vid~~g~  116 (220)
                      +.+|++|+++|.
T Consensus        87 g~iD~lv~nAG~   98 (272)
T PRK08159         87 GKLDFVVHAIGF   98 (272)
T ss_pred             CCCcEEEECCcc
Confidence            479999999874

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.00028  Score=55.18  Aligned_cols=76  Identities=21%  Similarity=0.349  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE-E--ecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS-F--LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |++|..+++.+...|++|++++++.++.+.+.+++   +... .  .|-.+.+.+.+.       .+++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4578999997 99999999999999999999999987665554432   3221 1  244444433322       2479


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|+++|..
T Consensus       119 d~li~~AG~~  128 (293)
T PRK05866        119 DILINNAGRS  128 (293)
T ss_pred             CEEEECCCCC
Confidence            9999998753

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.68  E-value=0.00059  Score=50.78  Aligned_cols=96  Identities=30%  Similarity=0.320  Sum_probs=63.9

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      .++++++||-+|+|. |..+..+++..+  .+|+.++.+++..+.+.+.   .|..  .++..+..+.. ...+.||.|+
T Consensus        73 ~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~~fD~I~  150 (212)
T PRK13942         73 DLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENAPYDRIY  150 (212)
T ss_pred             CCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCCCcCEEE
Confidence            478999999999875 777777887765  4899999998765555333   3432  12222111110 0113799998


Q ss_pred             EcCCCcccHHHHHhccccCCEEEEe
Q 027668          112 DTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       112 d~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      -............+.|++||+++..
T Consensus       151 ~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        151 VTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             ECCCcccchHHHHHhhCCCcEEEEE
Confidence            6555555667788999999998875

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=97.68  E-value=0.00042  Score=53.18  Aligned_cols=75  Identities=23%  Similarity=0.276  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.++++..   ...|-.+.+.+++.       .+.+|++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   84 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDCF   84 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            5689999997 89999999999999999999999888777765555531   12244444333221       2479999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        85 i~~ag~   90 (263)
T PRK06200         85 VGNAGI   90 (263)
T ss_pred             EECCCC
Confidence            999884

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.68  E-value=0.00063  Score=52.10  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=53.4

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-C--c-EEecCCCHHHHHHh--------cCCccEE
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-A--D-SFLVSRDQDEMQAA--------MGTMDGI  110 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~--~-~v~~~~~~~~~~~~--------~~~~d~v  110 (220)
                      +++||.|+ |.+|..+++.+...|++|++++++.++.+++.+..+ .  . ...|-.+.+.+.+.        .+.+|++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v   81 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL   81 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence            47899997 999999999999999999999998887766655543 1  1 12344454433321        3478999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      |.++|..
T Consensus        82 i~~ag~~   88 (260)
T PRK08267         82 FNNAGIL   88 (260)
T ss_pred             EECCCCC
Confidence            9999863

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=97.67  E-value=0.00042  Score=53.49  Aligned_cols=82  Identities=17%  Similarity=0.250  Sum_probs=58.3

Q ss_pred             hhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc
Q 027668           26 AGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM  104 (220)
Q Consensus        26 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  104 (220)
                      -+...+.+++... ..++++++|+|+|+.+.+++.-++..|+ +++++.|+.++.+.+++.++...    .  +..  ..
T Consensus       106 D~~Gf~~~L~~~~-~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~----~--~~~--~~  176 (272)
T PRK12550        106 DYIAIAKLLASYQ-VPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEW----R--PDL--GG  176 (272)
T ss_pred             CHHHHHHHHHhcC-CCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcc----h--hhc--cc
Confidence            3334445565443 3556789999999999999999999998 79999999988888777665321    0  111  01


Q ss_pred             CCccEEEEcCCC
Q 027668          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~vid~~g~  116 (220)
                      ..+|+||+|+..
T Consensus       177 ~~~dlvINaTp~  188 (272)
T PRK12550        177 IEADILVNVTPI  188 (272)
T ss_pred             ccCCEEEECCcc
Confidence            368999999864

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.67  E-value=0.0018  Score=49.17  Aligned_cols=72  Identities=19%  Similarity=0.276  Sum_probs=52.0

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEEEEc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGIIDT  113 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~vid~  113 (220)
                      +++|.|+ |.+|..+++.+...|++|+++++++++.+.+...++...   ..|-.+.+.+.+.       .+++|.+|.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~   81 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            5889997 999999999999999999999999877666655555322   1244444433322       2479999999


Q ss_pred             CCC
Q 027668          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        82 ag~   84 (248)
T PRK10538         82 AGL   84 (248)
T ss_pred             CCc
Confidence            875

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.67  E-value=0.0013  Score=50.45  Aligned_cols=76  Identities=14%  Similarity=0.234  Sum_probs=50.1

Q ss_pred             CCCCEEEEEcC-c--hHHHHHHHHHHHCCCeEEEEeCCcc---cHHHHHHHcCCcEE--ecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLGADSF--LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g--~~G~~~~~~~~~~g~~v~~~~~~~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~  105 (220)
                      ..|+.++|.|+ +  ++|.++++.+...|++|++..+++.   ..+++.++.|....  .|-.+.+.++++       .+
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            35688999997 4  7999999988889999998877632   22333333353322  355555444322       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      .+|++++++|.
T Consensus        86 ~iDilVnnag~   96 (260)
T PRK06603         86 SFDFLLHGMAF   96 (260)
T ss_pred             CccEEEEcccc
Confidence            79999998874

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.67  E-value=0.00037  Score=54.77  Aligned_cols=95  Identities=16%  Similarity=0.157  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHH-CCC-eEEEEeCCcccHHHHHHHcCCc--EEecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVERLGAD--SFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~-~g~-~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      ....+++|+|+|..|.+.+..+.. .+. ++.+..++.++.+.++++++..  .+. ..   ...+...++|+|+.|++.
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~-~~---~~~~av~~aDiVitaT~s  198 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE-PL---DGEAIPEAVDLVVTATTS  198 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE-EC---CHHHHhhcCCEEEEccCC
Confidence            456789999999999999888764 676 8999999998888877776421  111 11   223334589999999877


Q ss_pred             cccHHHHHhccccCCEEEEecCCCC
Q 027668          117 VHPLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       117 ~~~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      ...+-..  .+++|-.+..+|....
T Consensus       199 ~~Pl~~~--~~~~g~hi~~iGs~~p  221 (304)
T PRK07340        199 RTPVYPE--AARAGRLVVAVGAFTP  221 (304)
T ss_pred             CCceeCc--cCCCCCEEEecCCCCC
Confidence            6544333  3789999999997653

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.66  E-value=0.00023  Score=54.58  Aligned_cols=108  Identities=22%  Similarity=0.243  Sum_probs=70.9

Q ss_pred             hhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCc-EE-ecCCCHHHHHHh
Q 027668           29 TVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD-SF-LVSRDQDEMQAA  103 (220)
Q Consensus        29 ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~-~v-~~~~~~~~~~~~  103 (220)
                      ..+..+.....++||+++|=+|||- |.+++..|+.+|++|+.++-+++..+.+.+   +.|.. .+ +...+   .+.+
T Consensus        59 ~k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d---~rd~  134 (283)
T COG2230          59 AKLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD---YRDF  134 (283)
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc---cccc
Confidence            3344444444589999999999975 778889999999999999999886555433   34533 11 11111   1122


Q ss_pred             cCCccEEE-----EcCCCc---ccHHHHHhccccCCEEEEecCCC
Q 027668          104 MGTMDGII-----DTVSAV---HPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       104 ~~~~d~vi-----d~~g~~---~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+.||-|+     +.+|..   .-+..+-+.|+++|++.+-....
T Consensus       135 ~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~  179 (283)
T COG2230         135 EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITG  179 (283)
T ss_pred             ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecC
Confidence            23577764     345552   23567888999999999876654

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.63  E-value=0.0011  Score=50.79  Aligned_cols=76  Identities=18%  Similarity=0.281  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc--CC--cE-EecCCCHHHHHHh------cCCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--GA--DS-FLVSRDQDEMQAA------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~--g~--~~-v~~~~~~~~~~~~------~~~~d~  109 (220)
                      ++.++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++  +.  .. ..|-.+.+.+..+      .+.+|.
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~   83 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV   83 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence            4678999997 99999999999999999999999887766654443  21  11 1234444333322      247899


Q ss_pred             EEEcCCCc
Q 027668          110 IIDTVSAV  117 (220)
Q Consensus       110 vid~~g~~  117 (220)
                      +|.++|..
T Consensus        84 lv~~ag~~   91 (263)
T PRK09072         84 LINNAGVN   91 (263)
T ss_pred             EEECCCCC
Confidence            99998763

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.63  E-value=0.0019  Score=49.45  Aligned_cols=99  Identities=19%  Similarity=0.262  Sum_probs=64.1

Q ss_pred             CCCEEEEEcCc---hHHHHHHHHHHHCCCeEEEEeCCccc---HHHHHHHcCCcEE--ecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGLG---GLGHVAVKFAKAMGVKVTVISTSPSK---KSEAVERLGADSF--LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~g---~~G~~~~~~~~~~g~~v~~~~~~~~~---~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~~  106 (220)
                      .|+++||.|++   ++|.++++.+...|++|++++++++.   .+++.++++....  .|-.+.+.++++       .+.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   88 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR   88 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence            57899999963   89999999999999999998887532   2334344443222  244444433322       247


Q ss_pred             ccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          107 MDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~vid~~g~~~-----------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +|++|+++|...                             ..+.++..++.+|+++.++...
T Consensus        89 ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~  151 (258)
T PRK07533         89 LDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYG  151 (258)
T ss_pred             CCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            899999987421                             1133455666678888876543

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.62  E-value=0.00062  Score=52.24  Aligned_cols=75  Identities=27%  Similarity=0.285  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc---EEecCCCHHHHH----Hh---cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQ----AA---MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~----~~---~~~~d~v  110 (220)
                      ++++++|.|+ |.+|..+++.+...|++|++++++.++.+++....+..   ...|-.+.+.+.    +.   .+.+|++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   83 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCL   83 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4689999997 89999999999999999999999887766664444422   112444433222    22   2478999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        84 i~~Ag~   89 (262)
T TIGR03325        84 IPNAGI   89 (262)
T ss_pred             EECCCC
Confidence            999874

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.62  E-value=0.0018  Score=51.17  Aligned_cols=126  Identities=24%  Similarity=0.341  Sum_probs=85.2

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCC-ccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA-VHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~-~~~  119 (220)
                      -.|+++-|+|.|.+|+++++.++..|++|...+++..  .+..+++++.++    +   +.++....|++.-..+. +++
T Consensus       144 l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~~~~y~----~---l~ell~~sDii~l~~Plt~~T  214 (324)
T COG1052         144 LRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKELGARYV----D---LDELLAESDIISLHCPLTPET  214 (324)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhcCceec----c---HHHHHHhCCEEEEeCCCChHH
Confidence            3588999999999999999999999999999998875  233245555544    1   33444568888765543 332


Q ss_pred             ---H-HHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCccee-EEEEecccH--
Q 027668          120 ---L-MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRAD-IEVIPADYV--  192 (220)
Q Consensus       120 ---~-~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~i--  192 (220)
                         + ...+..|++++.+|.++...-                        -+-+.+++.+++|.+... .++|..|..  
T Consensus       215 ~hLin~~~l~~mk~ga~lVNtaRG~~------------------------VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~  270 (324)
T COG1052         215 RHLINAEELAKMKPGAILVNTARGGL------------------------VDEQALIDALKSGKIAGAGLDVFENEPALF  270 (324)
T ss_pred             hhhcCHHHHHhCCCCeEEEECCCccc------------------------cCHHHHHHHHHhCCcceEEeeecCCCCCCC
Confidence               1 346778999999998876331                        134567777777777754 366665544  


Q ss_pred             HHHHHHH
Q 027668          193 NTAMERL  199 (220)
Q Consensus       193 ~~a~~~~  199 (220)
                      +..+..+
T Consensus       271 d~~l~~l  277 (324)
T COG1052         271 DHPLLRL  277 (324)
T ss_pred             ChhHhhc
Confidence            3444443

>PLN00203 glutamyl-tRNA reductase

Probab=97.61  E-value=0.00072  Score=56.80  Aligned_cols=76  Identities=24%  Similarity=0.332  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      .+.+|+|+|+|.+|.++++.+...|+ +|+++.++.++.+.+..+++...+ .....+...+...++|+||.|++...
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i-~~~~~~dl~~al~~aDVVIsAT~s~~  341 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEI-IYKPLDEMLACAAEADVVFTSTSSET  341 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCce-EeecHhhHHHHHhcCCEEEEccCCCC
Confidence            36899999999999999999999998 799999998888888777742111 11112223344468999999987764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.61  E-value=0.00031  Score=51.86  Aligned_cols=77  Identities=22%  Similarity=0.396  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcc-------------------cHHHHH---HHcCCc-EE--ec-C
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS-------------------KKSEAV---ERLGAD-SF--LV-S   94 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~-------------------~~~~~~---~~~g~~-~v--~~-~   94 (220)
                      .+.+|+|+|+|++|..+++.+...|. ++++++.+.-                   |.+.+.   +++... .+  ++ .
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~   99 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKER   99 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhc
Confidence            34789999999999999999999999 8888887622                   111111   222211 11  11 1


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCcc
Q 027668           95 RDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        95 ~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      -+.+.+.++..++|+||+|..+..
T Consensus       100 i~~~~~~~~~~~~D~Vi~~~d~~~  123 (202)
T TIGR02356       100 VTAENLELLINNVDLVLDCTDNFA  123 (202)
T ss_pred             CCHHHHHHHHhCCCEEEECCCCHH
Confidence            122334455568999999998865

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.60  E-value=0.0019  Score=49.94  Aligned_cols=75  Identities=19%  Similarity=0.225  Sum_probs=53.2

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEEE
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~vi  111 (220)
                      ++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+.++...   -.|..+.+.+.+.       .+++|.+|
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi   82 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV   82 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999997 999999999998899999999998877666544444221   1234444333221       24789999


Q ss_pred             EcCCCc
Q 027668          112 DTVSAV  117 (220)
Q Consensus       112 d~~g~~  117 (220)
                      .++|..
T Consensus        83 ~~ag~~   88 (275)
T PRK08263         83 NNAGYG   88 (275)
T ss_pred             ECCCCc
Confidence            999864

>PRK04457 spermidine synthase; Provisional

Probab=97.60  E-value=0.003  Score=48.56  Aligned_cols=95  Identities=18%  Similarity=0.219  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHHcCC----c--EEecCCCHHHHHHhcCCccEEE-E
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGA----D--SFLVSRDQDEMQAAMGTMDGII-D  112 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~g~----~--~v~~~~~~~~~~~~~~~~d~vi-d  112 (220)
                      .+.++||++|+|+ |..+..+++... .++++++.+++-.+.+.+.|+.    +  .++..+-.+.+.+..+.+|+|| |
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            4567899999875 777777777764 5999999998877766555552    1  2333332344444445899997 4


Q ss_pred             cCCC---------cccHHHHHhccccCCEEEEe
Q 027668          113 TVSA---------VHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       113 ~~g~---------~~~~~~~~~~l~~~g~iv~~  136 (220)
                      +...         ...++.+.+.|+++|.++..
T Consensus       144 ~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        144 GFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             CCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            3221         12356788899999999873

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.60  E-value=0.0014  Score=49.92  Aligned_cols=75  Identities=20%  Similarity=0.381  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++   +...   ..|-.+.+.+.+.       .+++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   87 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI   87 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence            4688999997 99999999999999999999999877655543333   3221   1244444433322       2479


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        88 d~vi~~ag~   96 (254)
T PRK08085         88 DVLINNAGI   96 (254)
T ss_pred             CEEEECCCc
Confidence            999999985

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.60  E-value=0.0016  Score=49.22  Aligned_cols=73  Identities=16%  Similarity=0.059  Sum_probs=50.2

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-Cc-EEecCCCHHHHHHhcC----CccEEEEcCCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-AD-SFLVSRDQDEMQAAMG----TMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~~-~v~~~~~~~~~~~~~~----~~d~vid~~g~  116 (220)
                      .+++|.|+ |++|..+++.+...|++|+++++++++.+++..... .. ...|-.+.+.+.+...    ..|.++.++|.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag~   81 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAGD   81 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCcc
Confidence            46899997 999999999988999999999998877666543322 22 1235555555544432    46777766653

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.59  E-value=0.0016  Score=49.68  Aligned_cols=98  Identities=16%  Similarity=0.214  Sum_probs=62.8

Q ss_pred             CCCEEEEEcCc---hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC---c-EEecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGLG---GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---D-SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~g---~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~---~-~v~~~~~~~~~~~~-------~~~~  107 (220)
                      .|++++|.|++   ++|.++++.+...|++|+++.+++ +.++..+++..   . ...|-.+.+.++++       .+.+
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   84 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKI   84 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999963   899999999999999999988873 33333333321   1 11344444433322       2479


Q ss_pred             cEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          108 DGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       108 d~vid~~g~~~-----------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      |++|+++|...                             ..+..+..++++|+++.++...
T Consensus        85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~  146 (252)
T PRK06079         85 DGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFG  146 (252)
T ss_pred             CEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccC
Confidence            99999987421                             0123345566778988887644

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.58  E-value=0.0024  Score=47.95  Aligned_cols=101  Identities=15%  Similarity=0.247  Sum_probs=63.0

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe---EEEEeCC----cccH-------HHHHHHcCCcEEecCCC
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK---VTVISTS----PSKK-------SEAVERLGADSFLVSRD   96 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~---v~~~~~~----~~~~-------~~~~~~~g~~~v~~~~~   96 (220)
                      ..+++....--.+.+++|+|+|..|..++..+...|++   +++++++    .++.       +.+.+.++... .. . 
T Consensus        13 ~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~~-~-   89 (226)
T cd05311          13 LNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-TG-G-   89 (226)
T ss_pred             HHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-cc-C-
Confidence            34455443224668999999999999999999999985   8888887    3332       23434443221 11 1 


Q ss_pred             HHHHHHhcCCccEEEEcCCCcccH-HHHHhccccCCEEEEec
Q 027668           97 QDEMQAAMGTMDGIIDTVSAVHPL-MPLIGLLKSQGKLVLLG  137 (220)
Q Consensus        97 ~~~~~~~~~~~d~vid~~g~~~~~-~~~~~~l~~~g~iv~~g  137 (220)
                        .+.+...++|++|++++.. .+ ...++.++++..+..+.
T Consensus        90 --~l~~~l~~~dvlIgaT~~G-~~~~~~l~~m~~~~ivf~ls  128 (226)
T cd05311          90 --TLKEALKGADVFIGVSRPG-VVKKEMIKKMAKDPIVFALA  128 (226)
T ss_pred             --CHHHHHhcCCEEEeCCCCC-CCCHHHHHhhCCCCEEEEeC
Confidence              1222234699999999733 33 35566676666555443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.58  E-value=0.0022  Score=49.19  Aligned_cols=99  Identities=16%  Similarity=0.228  Sum_probs=64.0

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCc---ccHHHHHHHc-CCc---EEecCCCHHHHHHh-------c
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSP---SKKSEAVERL-GAD---SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~---~~~~~~~~~~-g~~---~v~~~~~~~~~~~~-------~  104 (220)
                      .+++++|.|+   +++|.++++.+...|++|+++.++.   ++.+++.+++ +..   ...|-.+.+.+.++       .
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   85 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV   85 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence            4688999996   5999999999999999999886542   3344554444 221   12344454433322       2


Q ss_pred             CCccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          105 GTMDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       105 ~~~d~vid~~g~~~-----------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +.+|++|+++|...                             ..+..+..++++|+|+.++...
T Consensus        86 g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~  150 (257)
T PRK08594         86 GVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLG  150 (257)
T ss_pred             CCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccC
Confidence            47999999887421                             0123445566789999887654

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.58  E-value=0.0053  Score=45.76  Aligned_cols=117  Identities=13%  Similarity=-0.034  Sum_probs=70.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      .++.+|||+|+|.++.-=++.+...|++|++++..-. ....+. ..|.-.... .+.+  .....++++||-|++....
T Consensus        23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~-~~~~i~~~~-r~~~--~~dl~g~~LViaATdD~~v   98 (223)
T PRK05562         23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLK-KYGNLKLIK-GNYD--KEFIKDKHLIVIATDDEKL   98 (223)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHH-hCCCEEEEe-CCCC--hHHhCCCcEEEECCCCHHH
Confidence            3578999999999999888888889999998887643 222332 233222221 1111  1122589999999998853


Q ss_pred             HHHHHhccccCCEEEEecCCCCCcccCccccc-cCCcEEEEee
Q 027668          120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL-TGEKIVGGSL  161 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~-~~~~~i~~~~  161 (220)
                      -.......+..+.++.........++-.+.+. ...+++.-+.
T Consensus        99 N~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST  141 (223)
T PRK05562         99 NNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNT  141 (223)
T ss_pred             HHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEEC
Confidence            33444444555777766544333444433333 3456665443

>PRK06128 oxidoreductase; Provisional

Probab=97.58  E-value=0.0021  Score=50.43  Aligned_cols=99  Identities=13%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc--HHHH---HHHcCCcEE---ecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK--KSEA---VERLGADSF---LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~--~~~~---~~~~g~~~v---~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++.++.+.  .+..   .+..|....   .|-.+.+.++++       .+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  133 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG  133 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence            4689999997 999999999999999999887765331  1222   233343221   244444433322       24


Q ss_pred             CccEEEEcCCCcc--------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          106 TMDGIIDTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~vid~~g~~~--------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++|++|.++|...                          ..+.++..++++|+++.++...
T Consensus       134 ~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~  194 (300)
T PRK06128        134 GLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQ  194 (300)
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCcc
Confidence            7999999988521                          1233445556788999887653

>PRK07574 formate dehydrogenase; Provisional

Probab=97.58  E-value=0.0025  Score=51.59  Aligned_cols=91  Identities=19%  Similarity=0.237  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH-
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL-  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~-  120 (220)
                      .|.+|.|+|.|.+|+.+++.++.+|++|++.+++....+ ..+.+|....   .   .+.++....|+|+.+....... 
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~-~~~~~g~~~~---~---~l~ell~~aDvV~l~lPlt~~T~  263 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEE-VEQELGLTYH---V---SFDSLVSVCDVVTIHCPLHPETE  263 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchh-hHhhcCceec---C---CHHHHhhcCCEEEEcCCCCHHHH
Confidence            567899999999999999999999999999998753322 2234554321   1   2444556789999888754322 


Q ss_pred             ----HHHHhccccCCEEEEecCC
Q 027668          121 ----MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       121 ----~~~~~~l~~~g~iv~~g~~  139 (220)
                          ...+..|+++..+|.++..
T Consensus       264 ~li~~~~l~~mk~ga~lIN~aRG  286 (385)
T PRK07574        264 HLFDADVLSRMKRGSYLVNTARG  286 (385)
T ss_pred             HHhCHHHHhcCCCCcEEEECCCC
Confidence                2457788998888887653

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.58  E-value=0.0027  Score=46.99  Aligned_cols=118  Identities=15%  Similarity=0.041  Sum_probs=77.2

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc-ccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~-~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      -.|.+|||+|+|.+|.-=+.++...|++|+++.... ++...+..+.+...+-..-+.+    ...++++||-++++...
T Consensus        10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~----~~~~~~lviaAt~d~~l   85 (210)
T COG1648          10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAE----DLDDAFLVIAATDDEEL   85 (210)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChh----hhcCceEEEEeCCCHHH
Confidence            367899999999999999999999999999998887 3444443333322221111111    12258999999999864


Q ss_pred             HHHHHhccccCCEEEEecCCCCCcccCcccc-ccCCcEEEEeec
Q 027668          120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPL-LTGEKIVGGSLI  162 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~-~~~~~~i~~~~~  162 (220)
                      -+......++.+.++.........++-.+.. -.+.+++.-+..
T Consensus        86 n~~i~~~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~  129 (210)
T COG1648          86 NERIAKAARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTG  129 (210)
T ss_pred             HHHHHHHHHHhCCceeccCCcccCceecceeeccCCeEEEEECC
Confidence            4556666777888888766555445444433 344566654444

>PRK07062 short chain dehydrogenase; Provisional

Probab=97.57  E-value=0.00057  Score=52.48  Aligned_cols=75  Identities=20%  Similarity=0.290  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CC-c---EEecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GA-D---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~-~---~v~~~~~~~~~~~~-------~~  105 (220)
                      .+++++|.|+ |.+|..+++.+...|++|+++++++++.+...+++    +. .   ...|-.+.+.+.++       .+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4689999997 89999999999999999999999887655543332    11 1   12345555443322       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus        87 ~id~li~~Ag~   97 (265)
T PRK07062         87 GVDMLVNNAGQ   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            79999999985

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.57  E-value=0.0015  Score=41.98  Aligned_cols=86  Identities=20%  Similarity=0.353  Sum_probs=59.8

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC---CeEEEE-eCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG---VKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g---~~v~~~-~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      +|.|+|+|.+|.++++-+...|   .+++++ .+++++.+++.++++...+. .+..+.+    +..|+||-|+-... +
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~----~~advvilav~p~~-~   74 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATA-DDNEEAA----QEADVVILAVKPQQ-L   74 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEES-EEHHHHH----HHTSEEEE-S-GGG-H
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhcccccc-CChHHhh----ccCCEEEEEECHHH-H
Confidence            4678899999999999999999   788855 99999988888888865432 1222332    25899999998874 5


Q ss_pred             HHHHhcc---ccCCEEEEe
Q 027668          121 MPLIGLL---KSQGKLVLL  136 (220)
Q Consensus       121 ~~~~~~l---~~~g~iv~~  136 (220)
                      ...+..+   .++..++.+
T Consensus        75 ~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   75 PEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             HHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHhhccCCCEEEEe
Confidence            5554444   345555443

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.57  E-value=0.00057  Score=52.32  Aligned_cols=75  Identities=20%  Similarity=0.277  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-----CCc---EEecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GAD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-----g~~---~v~~~~~~~~~~~~-------~~  105 (220)
                      .+++++|.|+ |++|..+++.+...|++|+++++++++.+++.+++     +..   ...|..+.+.+.++       .+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4688999997 99999999999999999999999877666554443     221   12244444333322       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|.++|.
T Consensus        86 ~id~li~~ag~   96 (260)
T PRK07063         86 PLDVLVNNAGI   96 (260)
T ss_pred             CCcEEEECCCc
Confidence            79999999885

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.57  E-value=0.00091  Score=54.59  Aligned_cols=76  Identities=18%  Similarity=0.240  Sum_probs=55.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC--Cc-EEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG--AD-SFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g--~~-~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .+++++|.|+ |.+|.++++.+...|++|+++++++++........+  .. ...|..+.+.+.+..+++|++|+++|..
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAGi~  256 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHGIN  256 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCCcC
Confidence            5789999997 999999999999999999999988765433322211  11 1235556666666667899999988753

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.56  E-value=0.0014  Score=48.48  Aligned_cols=97  Identities=28%  Similarity=0.287  Sum_probs=64.0

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHH---HcCCc---EEecCCCHHHHHHhcCCccEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~~~~d~v  110 (220)
                      .++++++||-+|+|. |..+..+++..+  .+|+.++.+++..+.+.+   ..+..   .++..+-.+... ..+.||.|
T Consensus        69 ~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~-~~~~fD~I  146 (205)
T PRK13944         69 EPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE-KHAPFDAI  146 (205)
T ss_pred             CCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc-cCCCccEE
Confidence            368899999999875 777777787764  589999999876555433   33421   222222111111 12479999


Q ss_pred             EEcCCCcccHHHHHhccccCCEEEEec
Q 027668          111 IDTVSAVHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 id~~g~~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      +-+...........+.|++||+++..-
T Consensus       147 i~~~~~~~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        147 IVTAAASTIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             EEccCcchhhHHHHHhcCcCcEEEEEE
Confidence            876655545567889999999998743

>PRK04148 hypothetical protein; Provisional

Probab=97.56  E-value=0.0024  Score=43.49  Aligned_cols=98  Identities=16%  Similarity=0.164  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      .++.+++++|.| .|..++..++..|.+|++++.++...+.+ ++.+.+.+.+.-..... ++-.++|++..+=..++..
T Consensus        15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a-~~~~~~~v~dDlf~p~~-~~y~~a~liysirpp~el~   91 (134)
T PRK04148         15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKA-KKLGLNAFVDDLFNPNL-EIYKNAKLIYSIRPPRDLQ   91 (134)
T ss_pred             ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHH-HHhCCeEEECcCCCCCH-HHHhcCCEEEEeCCCHHHH
Confidence            456889999999 78877777778999999999999887766 56676555432211111 2224789999888777644


Q ss_pred             HHHHhcccc-CCEEEEecCCCC
Q 027668          121 MPLIGLLKS-QGKLVLLGAPEK  141 (220)
Q Consensus       121 ~~~~~~l~~-~g~iv~~g~~~~  141 (220)
                      ...++.-++ +..++..-..++
T Consensus        92 ~~~~~la~~~~~~~~i~~l~~e  113 (134)
T PRK04148         92 PFILELAKKINVPLIIKPLSGE  113 (134)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCC
Confidence            445554433 445555544443

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=97.55  E-value=0.00055  Score=48.59  Aligned_cols=74  Identities=23%  Similarity=0.350  Sum_probs=49.0

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCC-eEEEEeCC--cccHHHHHHH---cCCcE-E--ecCCCHHHHHHh-------cCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTS--PSKKSEAVER---LGADS-F--LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~-~v~~~~~~--~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~-------~~~  106 (220)
                      ++++|.|+ +++|..+++.+...|. .|+++.++  .++.+.+..+   .+... +  .|..+.+.+++.       .+.
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46899997 9999999998888877 77888887  4444444333   34321 1  233444433322       248


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++|.++|..
T Consensus        81 ld~li~~ag~~   91 (167)
T PF00106_consen   81 LDILINNAGIF   91 (167)
T ss_dssp             ESEEEEECSCT
T ss_pred             ccccccccccc
Confidence            99999998875

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.55  E-value=0.0018  Score=51.59  Aligned_cols=89  Identities=22%  Similarity=0.357  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..+++.++.+|++|++.+++....  ....+|...    .+   ..++....|+|+-++....   
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~~~~~----~~---l~ell~~aDiV~l~lP~t~~T~  219 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE--AEKELGAEY----RP---LEELLRESDFVSLHVPLTKETY  219 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh--hHHHcCCEe----cC---HHHHHhhCCEEEEeCCCChHHh
Confidence            57899999999999999999999999999998875432  223444421    12   3334457899999886543   


Q ss_pred             -cH-HHHHhccccCCEEEEecCC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~~  139 (220)
                       .+ ...+..++++..++.++..
T Consensus       220 ~~i~~~~~~~mk~ga~lIN~aRg  242 (333)
T PRK13243        220 HMINEERLKLMKPTAILVNTARG  242 (333)
T ss_pred             hccCHHHHhcCCCCeEEEECcCc
Confidence             12 3467788899888887653

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.00063  Score=51.87  Aligned_cols=75  Identities=12%  Similarity=0.215  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+++   +..   ...|-.+.+.+.++       .+++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4789999997 99999999999999999999999887666554443   321   12344454433322       2489


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        88 d~lv~~ag~   96 (253)
T PRK05867         88 DIAVCNAGI   96 (253)
T ss_pred             CEEEECCCC
Confidence            999999875

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.54  E-value=0.0011  Score=51.60  Aligned_cols=95  Identities=18%  Similarity=0.142  Sum_probs=71.5

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+.......|+..+---.|++|.|+|. |.+|.-++.++...|+.|++..+....                     .
T Consensus       138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~---------------------l  196 (301)
T PRK14194        138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTD---------------------A  196 (301)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCC---------------------H
Confidence            467776666666766553357999999997 699999999999999999988655431                     2


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ++.....|+||-++|.+..+...+  +++|..++.+|..
T Consensus       197 ~e~~~~ADIVIsavg~~~~v~~~~--ik~GaiVIDvgin  233 (301)
T PRK14194        197 KALCRQADIVVAAVGRPRLIDADW--LKPGAVVIDVGIN  233 (301)
T ss_pred             HHHHhcCCEEEEecCChhcccHhh--ccCCcEEEEeccc
Confidence            233346899999999987665544  8899888888854

>PLN03139 formate dehydrogenase; Provisional

Probab=97.54  E-value=0.002  Score=52.15  Aligned_cols=91  Identities=16%  Similarity=0.170  Sum_probs=64.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH-
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL-  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~-  120 (220)
                      .|++|.|+|.|.+|+.+++.++.+|++|++.+++....+.. ++.|+..+   .   .+.++....|+|+.+....... 
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~-~~~g~~~~---~---~l~ell~~sDvV~l~lPlt~~T~  270 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELE-KETGAKFE---E---DLDAMLPKCDVVVINTPLTEKTR  270 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhH-hhcCceec---C---CHHHHHhhCCEEEEeCCCCHHHH
Confidence            57899999999999999999999999999988764332222 34554322   1   2334445689999887653221 


Q ss_pred             ----HHHHhccccCCEEEEecCC
Q 027668          121 ----MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       121 ----~~~~~~l~~~g~iv~~g~~  139 (220)
                          ...+..|+++..+|.++..
T Consensus       271 ~li~~~~l~~mk~ga~lIN~aRG  293 (386)
T PLN03139        271 GMFNKERIAKMKKGVLIVNNARG  293 (386)
T ss_pred             HHhCHHHHhhCCCCeEEEECCCC
Confidence                2467788888888887753

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.54  E-value=0.0024  Score=48.79  Aligned_cols=74  Identities=19%  Similarity=0.275  Sum_probs=50.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-HHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~vi  111 (220)
                      .+++++|.|+ |.+|..+++.+...|++|+++.+..+. .+.+ +..+... ..|-.+.+.+.++       .+++|++|
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKEL-REKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH-HhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4688999997 999999999999999999887665443 2233 3334322 2344454433322       24799999


Q ss_pred             EcCCC
Q 027668          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      .++|.
T Consensus        85 ~~ag~   89 (255)
T PRK06463         85 NNAGI   89 (255)
T ss_pred             ECCCc
Confidence            99876

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.54  E-value=0.0015  Score=49.93  Aligned_cols=75  Identities=16%  Similarity=0.312  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcEE---ecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSF---LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~v---~~~~~~~~~~~~-------~~~~  107 (220)
                      +++++||.|+ |.+|..+++.+...|++|+++++++++.+++.++   .+....   .|-.+.+.+.+.       .+++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999997 9999999999999999999999988665554433   343321   244444433322       2468


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        86 d~vi~~ag~   94 (262)
T PRK13394         86 DILVSNAGI   94 (262)
T ss_pred             CEEEECCcc
Confidence            999999876

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.53  E-value=0.0027  Score=50.18  Aligned_cols=95  Identities=25%  Similarity=0.252  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHH-HCCC-eEEEEeCCcccHHHHHHHcC---CcEEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERLG---ADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~-~~g~-~v~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      ....+++|+|+|.+|...+..+. ..+. +|++..++.++.+.+++++.   ..... ..+   ..+...+.|+|+.|++
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~-~~~---~~~av~~aDIVi~aT~  198 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV-VTD---LEAAVRQADIISCATL  198 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE-eCC---HHHHHhcCCEEEEeeC
Confidence            45688999999999999987444 3565 89999999988888777653   22111 122   2233357999999887


Q ss_pred             CcccHHHHHhccccCCEEEEecCCC
Q 027668          116 AVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ....+- --+.++++-.+..+|...
T Consensus       199 s~~pvl-~~~~l~~g~~i~~ig~~~  222 (314)
T PRK06141        199 STEPLV-RGEWLKPGTHLDLVGNFT  222 (314)
T ss_pred             CCCCEe-cHHHcCCCCEEEeeCCCC
Confidence            653211 124678888777777643

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.52  E-value=0.0023  Score=48.86  Aligned_cols=75  Identities=20%  Similarity=0.265  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~  109 (220)
                      +++++||.|+ +++|.++++.+...|++|+++++.+. +.....+..+...   ..|-.+.+.++++       .+++|+
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD~   86 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHIDI   86 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999997 99999999999999999998877543 2222223444321   2355554444322       247999


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +++++|.
T Consensus        87 lv~~ag~   93 (251)
T PRK12481         87 LINNAGI   93 (251)
T ss_pred             EEECCCc
Confidence            9999875

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=97.51  E-value=0.0022  Score=49.46  Aligned_cols=137  Identities=20%  Similarity=0.137  Sum_probs=87.0

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCC-----------HHH-------HHH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD-----------QDE-------MQA  102 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-----------~~~-------~~~  102 (220)
                      .+...+++.|.|..|+.++..++..|+-|...+-...+.++. +.+|++..--.++           .+.       +.+
T Consensus       162 v~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv-~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~  240 (356)
T COG3288         162 VSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQV-ESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE  240 (356)
T ss_pred             ccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhh-hhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence            466788999999999999999999999887777766665555 5677543321111           111       112


Q ss_pred             hcCCccEEEEcCCCcc------cHHHHHhccccCCEEEEecCCC-CCc--ccCccccccCCcEEEEeeccCHHHHHHHHH
Q 027668          103 AMGTMDGIIDTVSAVH------PLMPLIGLLKSQGKLVLLGAPE-KPL--ELPAFPLLTGEKIVGGSLIGGLKETQEMID  173 (220)
Q Consensus       103 ~~~~~d~vid~~g~~~------~~~~~~~~l~~~g~iv~~g~~~-~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  173 (220)
                      ...++|+||.++--+.      .....+..|++|+.+|.+.... +++  +.+..-...+++++.|......+.-...-+
T Consensus       241 ~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~nlp~r~a~~aS~  320 (356)
T COG3288         241 QAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYTNLPGRLAAQASQ  320 (356)
T ss_pred             HhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCcccccCCeEEEeCCeEEEeecCcchhhhhhHHH
Confidence            2248999999874431      1356788999999999886654 333  333344567789998875533222233334


Q ss_pred             HHHhC
Q 027668          174 FAAKH  178 (220)
Q Consensus       174 ~~~~~  178 (220)
                      ++.++
T Consensus       321 LYa~N  325 (356)
T COG3288         321 LYATN  325 (356)
T ss_pred             HHHHH
Confidence            44443

>PRK06940 short chain dehydrogenase; Provisional

Probab=97.51  E-value=0.0018  Score=50.15  Aligned_cols=97  Identities=21%  Similarity=0.329  Sum_probs=61.8

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHHh------cCCccEE
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA------MGTMDGI  110 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~------~~~~d~v  110 (220)
                      ++.++|.|+|.+|..++..+. .|++|+++++++++.+.+.+++   |..   ...|-.+.+.+.+.      .+++|++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~l   80 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTGL   80 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCEE
Confidence            357788898999999999885 7999999999876655543333   322   12344454433322      2479999


Q ss_pred             EEcCCCccc------------------HHHHHhccccCCEEEEecCCC
Q 027668          111 IDTVSAVHP------------------LMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 id~~g~~~~------------------~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      |+++|....                  ++.+...++++|+++.+++..
T Consensus        81 i~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~  128 (275)
T PRK06940         81 VHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS  128 (275)
T ss_pred             EECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence            999986421                  223344555667777766543

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.51  E-value=0.00081  Score=51.32  Aligned_cols=76  Identities=25%  Similarity=0.377  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHhc-------CCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+.+   |...   ..|..+.+.+.++.       +.+
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   88 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI   88 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            5689999997 99999999999989999999999877655443332   3211   12445544443322       378


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|.++|..
T Consensus        89 d~li~~ag~~   98 (255)
T PRK07523         89 DILVNNAGMQ   98 (255)
T ss_pred             CEEEECCCCC
Confidence            9999998863

>PRK06398 aldose dehydrogenase; Validated

Probab=97.50  E-value=0.0018  Score=49.62  Aligned_cols=69  Identities=16%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .|+++||.|+ |.+|..+++.+...|++|+++++++....      ... ...|-.+.+.+.++       .+++|++|+
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~~------~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li~   78 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYN------DVDYFKVDVSNKEQVIKGIDYVISKYGRIDILVN   78 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccccC------ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4689999997 99999999999999999999988764321      111 12344454433322       247999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        79 ~Ag~   82 (258)
T PRK06398         79 NAGI   82 (258)
T ss_pred             CCCC
Confidence            9875

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.0013  Score=50.50  Aligned_cols=77  Identities=19%  Similarity=0.322  Sum_probs=53.9

Q ss_pred             CCCCCEEEEEcC-c-hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH----cCCcEE----ecCCCHHHHHHh------
Q 027668           40 DKPGMHVGVVGL-G-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LGADSF----LVSRDQDEMQAA------  103 (220)
Q Consensus        40 ~~~~~~vlI~G~-g-~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~g~~~v----~~~~~~~~~~~~------  103 (220)
                      +.++++++|.|+ | ++|.++++.+...|++|++++++.++.+...++    ++...+    .|..+.+.+.++      
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   93 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE   93 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            456789999996 6 799999999999999999998887665544332    343222    244444433322      


Q ss_pred             -cCCccEEEEcCCC
Q 027668          104 -MGTMDGIIDTVSA  116 (220)
Q Consensus       104 -~~~~d~vid~~g~  116 (220)
                       .+.+|++|.++|.
T Consensus        94 ~~g~id~li~~ag~  107 (262)
T PRK07831         94 RLGRLDVLVNNAGL  107 (262)
T ss_pred             HcCCCCEEEECCCC
Confidence             2478999999985

>PRK05717 oxidoreductase; Validated

Probab=97.49  E-value=0.0012  Score=50.47  Aligned_cols=77  Identities=19%  Similarity=0.315  Sum_probs=54.2

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHH----h---cCCccE
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQA----A---MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~----~---~~~~d~  109 (220)
                      ..|++++|.|+ |.+|..+++.+...|++|++++++.++.+...+.++...   ..|-.+.+.+.+    .   .+.+|+
T Consensus         8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   87 (255)
T PRK05717          8 HNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA   87 (255)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            35688999997 999999999999999999999887766555555555321   234444443322    2   236899


Q ss_pred             EEEcCCCc
Q 027668          110 IIDTVSAV  117 (220)
Q Consensus       110 vid~~g~~  117 (220)
                      +|.++|..
T Consensus        88 li~~ag~~   95 (255)
T PRK05717         88 LVCNAAIA   95 (255)
T ss_pred             EEECCCcc
Confidence            99998753

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.49  E-value=0.00072  Score=51.61  Aligned_cols=76  Identities=21%  Similarity=0.311  Sum_probs=53.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHH-------hcCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQA-------AMGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~-------~~~~  106 (220)
                      .++++++|.|+ |.+|..+++.+...|++|+++++++++.+.+.+++   +..   ...|..+.+.+..       ..+.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR   82 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            45688999997 99999999999999999999999877655554433   221   2234444443322       1247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        83 ~d~vi~~ag~   92 (258)
T PRK07890         83 VDALVNNAFR   92 (258)
T ss_pred             ccEEEECCcc
Confidence            8999999875

>PRK05854 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.00075  Score=53.34  Aligned_cols=75  Identities=21%  Similarity=0.205  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----C-Cc---EEecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----G-AD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g-~~---~v~~~~~~~~~~~~-------~~  105 (220)
                      .|++++|.|+ +++|..+++.+...|++|++++++.++.+++.+++    + ..   ...|-.+.+.++++       .+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            4689999997 99999999999999999999999887665554433    1 11   12355555444332       23


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      .+|++|+++|.
T Consensus        93 ~iD~li~nAG~  103 (313)
T PRK05854         93 PIHLLINNAGV  103 (313)
T ss_pred             CccEEEECCcc
Confidence            79999998875

>PRK06194 hypothetical protein; Provisional

Probab=97.48  E-value=0.0009  Score=52.03  Aligned_cols=76  Identities=20%  Similarity=0.324  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHhc-------CCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~-------~~~  107 (220)
                      .+.++||.|+ |.+|..+++.+...|++|++++++.+..++..+++   +...   ..|..+.+.+.+..       +++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            3578999997 99999999999999999999998876655544433   3221   12444444443322       368


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|.++|..
T Consensus        85 d~vi~~Ag~~   94 (287)
T PRK06194         85 HLLFNNAGVG   94 (287)
T ss_pred             CEEEECCCCC
Confidence            9999999863

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.48  E-value=0.00067  Score=54.05  Aligned_cols=77  Identities=21%  Similarity=0.343  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcc---------------------cHHH---HHHHcCCc----EEe
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS---------------------KKSE---AVERLGAD----SFL   92 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~---------------------~~~~---~~~~~g~~----~v~   92 (220)
                      .+.+|+|+|+|++|..++..+...|. ++++++.+.-                     |.+.   ..++++.+    .+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~  102 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV  102 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence            34789999999999999999999999 7887887631                     1111   11233321    111


Q ss_pred             cCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           93 VSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        93 ~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      ..-..+.+.++..++|+||||+.+..
T Consensus       103 ~~~~~~~~~~~~~~~DlVid~~D~~~  128 (338)
T PRK12475        103 TDVTVEELEELVKEVDLIIDATDNFD  128 (338)
T ss_pred             ccCCHHHHHHHhcCCCEEEEcCCCHH
Confidence            11123445566678999999998764

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=97.47  E-value=0.0013  Score=49.13  Aligned_cols=96  Identities=30%  Similarity=0.367  Sum_probs=62.4

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHH---HcCCcE--EecCCCHHHHHHhcCCccEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVE---RLGADS--FLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~---~~g~~~--v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      .++++++||-+|+|. |..++.+++..+.  +|+.++.+++..+.+.+   ++|.+.  ++..+-.+.. .....||.|+
T Consensus        74 ~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Ii  151 (215)
T TIGR00080        74 ELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLAPYDRIY  151 (215)
T ss_pred             CCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccCCCCEEE
Confidence            378999999999874 7777778877654  69999998876555433   344321  2211111110 1113799998


Q ss_pred             EcCCCcccHHHHHhccccCCEEEEe
Q 027668          112 DTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       112 d~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      -+...........+.|++||+++..
T Consensus       152 ~~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       152 VTAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             EcCCcccccHHHHHhcCcCcEEEEE
Confidence            6555555566788999999998865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.47  E-value=0.0012  Score=51.61  Aligned_cols=98  Identities=27%  Similarity=0.257  Sum_probs=62.2

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHc---CCc-EEecCCCHHHHHHhcCCccEEEEcC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL---GAD-SFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      ..++++||-+|+|+ |..++.+++ .|+ +|+.++.++...+.+.+..   +.. .+.... .+......+.||+|+...
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~-~~~~~~~~~~fDlVvan~  233 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKL-IYLEQPIEGKADVIVANI  233 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEe-cccccccCCCceEEEEec
Confidence            46889999999987 877777665 566 8999999988666554332   221 111110 011111124899998654


Q ss_pred             CCc---ccHHHHHhccccCCEEEEecCCC
Q 027668          115 SAV---HPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       115 g~~---~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ...   ..+..+.+.|+++|.++..|...
T Consensus       234 ~~~~l~~ll~~~~~~LkpgG~li~sgi~~  262 (288)
T TIGR00406       234 LAEVIKELYPQFSRLVKPGGWLILSGILE  262 (288)
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence            433   23455678999999999887643

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.47  E-value=0.0012  Score=52.17  Aligned_cols=71  Identities=23%  Similarity=0.280  Sum_probs=53.6

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhcCCccEEEEcCCC
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      +|+|.|+ |-+|..+++.+...|.+|++++++.++...+ ...+.+.+. |..+.+.+.+...++|+||.+++.
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~   74 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL-KEWGAELVYGDLSLPETLPPSFKGVTAIIDASTS   74 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH-hhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence            6899997 9999999999999999999999986544333 334655443 445566666666789999998764

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.47  E-value=0.0013  Score=48.95  Aligned_cols=97  Identities=19%  Similarity=0.178  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe---------c-------CCCHHHHH-Hh
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL---------V-------SRDQDEMQ-AA  103 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~---------~-------~~~~~~~~-~~  103 (220)
                      .++.+||+.|+|. |.-++-+|. .|.+|+.++-++...+.+.++.+.....         .       ..+..... ..
T Consensus        33 ~~~~rvLd~GCG~-G~da~~LA~-~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~  110 (213)
T TIGR03840        33 PAGARVFVPLCGK-SLDLAWLAE-QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD  110 (213)
T ss_pred             CCCCeEEEeCCCc-hhHHHHHHh-CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence            5778999999985 777777764 7999999999998877765544432110         0       00000000 11


Q ss_pred             cCCccEEEEcCCCc--------ccHHHHHhccccCCEEEEecCC
Q 027668          104 MGTMDGIIDTVSAV--------HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       104 ~~~~d~vid~~g~~--------~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      .+.||.++|+....        ..++...+.|++||++++.+..
T Consensus       111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~  154 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLD  154 (213)
T ss_pred             CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence            23589999976432        1356788899999997776654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK06949 short chain dehydrogenase; Provisional

Probab=97.47  E-value=0.00093  Score=51.00  Aligned_cols=76  Identities=25%  Similarity=0.314  Sum_probs=54.0

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC--c-EEecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA--D-SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~--~-~v~~~~~~~~~~~~-------~~~  106 (220)
                      ..+++++|.|+ |.+|..+++.+...|++|+++++++++.+.+...+   +.  . ...|..+.+.+++.       .+.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            45789999997 99999999999999999999999887765554432   21  1 12244444433322       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        87 ~d~li~~ag~   96 (258)
T PRK06949         87 IDILVNNSGV   96 (258)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0012  Score=50.30  Aligned_cols=74  Identities=15%  Similarity=0.127  Sum_probs=53.1

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCC--c-EEecCCCHHHHHHhcC-CccEEEEcC
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGA--D-SFLVSRDQDEMQAAMG-TMDGIIDTV  114 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~--~-~v~~~~~~~~~~~~~~-~~d~vid~~  114 (220)
                      ++++||.|+ |.+|..+++.+...|++|++++++++....+..   ..+.  . ...|..+.+.+.+... ++|++|.++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a   81 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA   81 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence            467999997 999999999999999999999988765444322   2232  1 1235555555555444 899999998


Q ss_pred             CC
Q 027668          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      |.
T Consensus        82 g~   83 (257)
T PRK09291         82 GI   83 (257)
T ss_pred             Cc
Confidence            84

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.46  E-value=0.00084  Score=53.35  Aligned_cols=95  Identities=18%  Similarity=0.278  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHH-HCCC-eEEEEeCCcccHHHHHHHc----CCcEEecCCCHHHHHHhcCCccEEEEcC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERL----GADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~-~~g~-~v~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      +...+++|+|+|..|.+.+..+. ..+. +|.+..++.++.+.+++++    |.. +....+   ..+...+.|+|+.|+
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~~~---~~~av~~aDiVvtaT  202 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAATD---PRAAMSGADIIVTTT  202 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEeCC---HHHHhccCCEEEEec
Confidence            44568999999999988888776 5776 8999999998877776655    433 211222   333345899999998


Q ss_pred             CCcccHHHHHhccccCCEEEEecCCC
Q 027668          115 SAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       115 g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +....+- .-..++++-.+..+|...
T Consensus       203 ~s~~p~i-~~~~l~~g~~i~~vg~~~  227 (326)
T TIGR02992       203 PSETPIL-HAEWLEPGQHVTAMGSDA  227 (326)
T ss_pred             CCCCcEe-cHHHcCCCcEEEeeCCCC
Confidence            7754221 123478888888887643

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.45  E-value=0.0014  Score=49.79  Aligned_cols=75  Identities=24%  Similarity=0.449  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc---EEecCCCHHHHHH----h---cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQA----A---MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~----~---~~~~  107 (220)
                      +++++||.|+ |++|+.+++.+...|++|++++++.++.+.+.++   .+..   ...|-.+.+.+.+    .   .+++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 9999999999999999999999987665554333   2332   1233344333322    1   2468


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |.+|.++|.
T Consensus        84 d~vi~~ag~   92 (253)
T PRK08217         84 NGLINNAGI   92 (253)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK05884 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.0012  Score=49.52  Aligned_cols=71  Identities=23%  Similarity=0.272  Sum_probs=52.9

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhc----CCccEEEEcCC
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAM----GTMDGIIDTVS  115 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~----~~~d~vid~~g  115 (220)
                      +++|.|+ |.+|..+++.+...|++|++++++.++.+.+.++.+...+ .|..+.+.+++..    +.+|++|+++|
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag   78 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPA   78 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCC
Confidence            4789987 9999999999999999999999988777666566555432 3555555444332    36899999875

>PRK09186 flagellin modification protein A; Provisional

Probab=97.44  E-value=0.001  Score=50.73  Aligned_cols=74  Identities=23%  Similarity=0.305  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CC---cE-EecCCCHHHHHHhc-------C
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GA---DS-FLVSRDQDEMQAAM-------G  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~---~~-v~~~~~~~~~~~~~-------~  105 (220)
                      ++++++|.|+ |.+|..++..+...|++|+++.+++++.+++.+++    +.   .. ..|-.+.+.+.++.       +
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5789999997 99999999999999999999998877765554443    22   12 23555555443322       3


Q ss_pred             CccEEEEcCC
Q 027668          106 TMDGIIDTVS  115 (220)
Q Consensus       106 ~~d~vid~~g  115 (220)
                      ++|++|.+++
T Consensus        83 ~id~vi~~A~   92 (256)
T PRK09186         83 KIDGAVNCAY   92 (256)
T ss_pred             CccEEEECCc
Confidence            5899999985

>PRK12747 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.0028  Score=48.24  Aligned_cols=99  Identities=15%  Similarity=0.212  Sum_probs=60.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEe-CCcccHHHHHHHc---CCcE---EecCCCHHHH-------HH----
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVERL---GADS---FLVSRDQDEM-------QA----  102 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~~~---g~~~---v~~~~~~~~~-------~~----  102 (220)
                      .+++++|.|+ |.+|.++++.+...|++|++.. +..++.+....++   +...   ..|-.+.+.+       .+    
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN   82 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence            4688999997 9999999999999999998865 4444433332222   3211   1233332211       11    


Q ss_pred             hcC--CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          103 AMG--TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       103 ~~~--~~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ..+  ++|++|.++|...                         ..+.+++.+++.|+++.++...
T Consensus        83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~  147 (252)
T PRK12747         83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA  147 (252)
T ss_pred             hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcc
Confidence            112  6999999988521                         1123455566779999988754

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.001  Score=51.52  Aligned_cols=75  Identities=21%  Similarity=0.314  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+++.+++   |...   ..|-.+.+.+.++       .+.+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV   84 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999997 99999999999999999999998877666554433   3221   2244444433322       2468


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        85 d~li~nAg~   93 (275)
T PRK05876         85 DVVFSNAGI   93 (275)
T ss_pred             CEEEECCCc
Confidence            999999885

>PLN02253 xanthoxin dehydrogenase

Probab=97.44  E-value=0.0015  Score=50.69  Aligned_cols=75  Identities=21%  Similarity=0.311  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC----c-EEecCCCHHHHHHh-------cCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----D-SFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~----~-~v~~~~~~~~~~~~-------~~~~d  108 (220)
                      .++++||.|+ |.+|.++++.+...|++|+++++.++..+.+.++++.    . ...|-.+.+.+.+.       .+++|
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~id   96 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTLD   96 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            4688999997 9999999999988999999999887665555444432    1 12344554444332       24799


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|+++|.
T Consensus        97 ~li~~Ag~  104 (280)
T PLN02253         97 IMVNNAGL  104 (280)
T ss_pred             EEEECCCc
Confidence            99999875

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.43  E-value=0.0017  Score=51.24  Aligned_cols=91  Identities=18%  Similarity=0.255  Sum_probs=61.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~--  119 (220)
                      .+|.|+|+|.+|...++.++..|.  +|+++++++++.+.+ ++.|....... +   ..+...+.|+||.|+.....  
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a-~~~g~~~~~~~-~---~~~~~~~aDvViiavp~~~~~~   81 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARA-RELGLGDRVTT-S---AAEAVKGADLVILCVPVGASGA   81 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHH-HhCCCCceecC-C---HHHHhcCCCEEEECCCHHHHHH
Confidence            679999999999999999998885  899999988776665 45664211111 1   12223578999999987532  


Q ss_pred             -HHHHHhccccCCEEEEecCC
Q 027668          120 -LMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       120 -~~~~~~~l~~~g~iv~~g~~  139 (220)
                       +......++++..++.+|..
T Consensus        82 v~~~l~~~l~~~~iv~dvgs~  102 (307)
T PRK07502         82 VAAEIAPHLKPGAIVTDVGSV  102 (307)
T ss_pred             HHHHHHhhCCCCCEEEeCccc
Confidence             22233455667766666653

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0057  Score=46.22  Aligned_cols=100  Identities=19%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-HHHHH---HHcCCc-EE--ecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAV---ERLGAD-SF--LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-~~~~~---~~~g~~-~v--~~~~~~~~~~~~-------~~  105 (220)
                      .++.+++|.|+ |.+|..+++.+...|++++++.++.+. .+.+.   +..+.. ..  .|-.+.+.+.+.       .+
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35688999997 999999999999999998887765432 22222   223321 11  233444333222       24


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++|++|.++|...                         .++.+++.++++|+++.++...
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~  142 (245)
T PRK12937         83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSV  142 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecc
Confidence            7999999988531                         0123344555678999887643

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.43  E-value=0.00092  Score=53.00  Aligned_cols=75  Identities=20%  Similarity=0.247  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-----cE-EecCCCHHHHHHhc-------CCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-----DS-FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-----~~-v~~~~~~~~~~~~~-------~~~  107 (220)
                      ++++++|.|+ |.+|..+++.+...|++|++++++.++.+.+.++++.     .. ..|-.+.+.++++.       +++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   84 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL   84 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence            4678999997 9999999999999999999999988776666555421     11 12444544433222       369


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        85 D~li~nAg~   93 (322)
T PRK07453         85 DALVCNAAV   93 (322)
T ss_pred             cEEEECCcc
Confidence            999999873

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.43  E-value=0.0034  Score=48.59  Aligned_cols=74  Identities=19%  Similarity=0.274  Sum_probs=51.0

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCC----c-EEecCCCHHHHHH---h---cCCc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA----D-SFLVSRDQDEMQA---A---MGTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~----~-~v~~~~~~~~~~~---~---~~~~  107 (220)
                      ++++||.|+ |.+|..++..+...|++|++++++.+..+...+.   .+.    . ...|..+.+.+..   .   .+++
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i   82 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI   82 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence            568999997 9999999999999999999999887755444222   221    1 1224445443322   2   2478


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |+++.++|.
T Consensus        83 d~vv~~ag~   91 (280)
T PRK06914         83 DLLVNNAGY   91 (280)
T ss_pred             eEEEECCcc
Confidence            999999875

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.0012  Score=50.38  Aligned_cols=75  Identities=23%  Similarity=0.317  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE-E--ecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS-F--LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~-------~~~~  107 (220)
                      ++++++|.|+ |.+|..+++.+...|++|+++++++++.+.+.+++   +... .  .|-.+.+.+.++       .+++
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999997 99999999999999999999999887766654433   3221 1  244444433322       2479


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        85 d~li~~ag~   93 (254)
T PRK07478         85 DIAFNNAGT   93 (254)
T ss_pred             CEEEECCCC
Confidence            999999875

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.42  E-value=0.0049  Score=47.42  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCc---hHHHHHHHHHHHCCCeEEEEeCCc---ccHHHHHHHcCCc--EEecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGLG---GLGHVAVKFAKAMGVKVTVISTSP---SKKSEAVERLGAD--SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~g---~~G~~~~~~~~~~g~~v~~~~~~~---~~~~~~~~~~g~~--~v~~~~~~~~~~~~-------~~~  106 (220)
                      .+++++|.|++   ++|.++++.+...|++|++..+++   +..+++..+.+..  ...|-.+.+.++++       .+.
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   84 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK   84 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence            57889999973   799999999999999999887763   1222332222321  22344554444322       246


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        85 iD~linnAg~   94 (262)
T PRK07984         85 FDGFVHSIGF   94 (262)
T ss_pred             CCEEEECCcc
Confidence            8999999974

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.001  Score=50.04  Aligned_cols=75  Identities=21%  Similarity=0.351  Sum_probs=51.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcEE-ecCCCHHHHHH-------hcCCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSF-LVSRDQDEMQA-------AMGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~v-~~~~~~~~~~~-------~~~~~d~  109 (220)
                      +++++||.|+ |.+|..+++.+...|++|++++++.++.....++   .+...+ .|..+.+.+.+       ..+++|+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   85 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDA   85 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCE
Confidence            4689999997 9999999999998999999999977654333222   233322 23344333322       2247999


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|.++|.
T Consensus        86 vi~~ag~   92 (239)
T PRK12828         86 LVNIAGA   92 (239)
T ss_pred             EEECCcc
Confidence            9998875

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.41  E-value=0.0028  Score=48.96  Aligned_cols=95  Identities=19%  Similarity=0.202  Sum_probs=70.9

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      ..+|+..+.+..++...---.|++|+|+|- ..+|.-++.+++..|+.|++..+....                     +
T Consensus       138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~~---------------------l  196 (285)
T PRK10792        138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTKN---------------------L  196 (285)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCCC---------------------H
Confidence            467776777777766553246999999997 569999999999999999887654221                     2


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ++....+|++|.++|.+..+..  +.++++..++.+|..
T Consensus       197 ~~~~~~ADIvi~avG~p~~v~~--~~vk~gavVIDvGin  233 (285)
T PRK10792        197 RHHVRNADLLVVAVGKPGFIPG--EWIKPGAIVIDVGIN  233 (285)
T ss_pred             HHHHhhCCEEEEcCCCcccccH--HHcCCCcEEEEcccc
Confidence            3334578999999999874433  678999999888854

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.40  E-value=0.0009  Score=49.73  Aligned_cols=34  Identities=26%  Similarity=0.455  Sum_probs=29.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      ...+|+|+|+|++|..++..+...|. ++++++.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            34789999999999999999999999 68888877

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.40  E-value=0.0019  Score=50.98  Aligned_cols=89  Identities=20%  Similarity=0.301  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH-
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL-  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~-  120 (220)
                      .|++|.|+|.|.+|..+++.++.+|++|++.+++.++..      +.....   ..+.+.++....|+|+.+....+.. 
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~------~~~~~~---~~~~l~e~l~~aDvvv~~lPlt~~T~  205 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWP------GVQSFA---GREELSAFLSQTRVLINLLPNTPETV  205 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCC------Cceeec---ccccHHHHHhcCCEEEECCCCCHHHH
Confidence            678999999999999999999999999999987653321      222221   1223445556789999888754321 


Q ss_pred             ----HHHHhccccCCEEEEecCC
Q 027668          121 ----MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       121 ----~~~~~~l~~~g~iv~~g~~  139 (220)
                          ...+..|+++..+|.+|..
T Consensus       206 ~li~~~~l~~mk~ga~lIN~aRG  228 (312)
T PRK15469        206 GIINQQLLEQLPDGAYLLNLARG  228 (312)
T ss_pred             HHhHHHHHhcCCCCcEEEECCCc
Confidence                2356788888888888753

>PRK06125 short chain dehydrogenase; Provisional

Probab=97.40  E-value=0.0012  Score=50.46  Aligned_cols=75  Identities=20%  Similarity=0.340  Sum_probs=53.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCc-EE--ecCCCHHHHHHhc---CCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GAD-SF--LVSRDQDEMQAAM---GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~v--~~~~~~~~~~~~~---~~~d~v  110 (220)
                      .+++++|.|+ |++|..+++.+...|++|+++++++++.+.+.+++    +.. ..  .|-.+.+.+.+..   +.+|++
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~l   85 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDIL   85 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCEE
Confidence            4689999997 89999999999999999999999877665543332    321 11  2444444444332   479999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |.++|.
T Consensus        86 v~~ag~   91 (259)
T PRK06125         86 VNNAGA   91 (259)
T ss_pred             EECCCC
Confidence            999875

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.40  E-value=0.0053  Score=47.61  Aligned_cols=77  Identities=26%  Similarity=0.264  Sum_probs=57.6

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-Ee-------cCCCHHHHHH----h---c
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FL-------VSRDQDEMQA----A---M  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~-------~~~~~~~~~~----~---~  104 (220)
                      +|..+|+|.|. .++|++++.-++..|+.|.++.++.+++.++++.++... +.       |-.+.+.+..    .   .
T Consensus        31 k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~  110 (331)
T KOG1210|consen   31 KPRRHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLE  110 (331)
T ss_pred             CccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhcc
Confidence            45578899875 899999999999999999999999999999988887422 11       1122333322    2   2


Q ss_pred             CCccEEEEcCCCc
Q 027668          105 GTMDGIIDTVSAV  117 (220)
Q Consensus       105 ~~~d~vid~~g~~  117 (220)
                      +.+|.+|.|+|..
T Consensus       111 ~~~d~l~~cAG~~  123 (331)
T KOG1210|consen  111 GPIDNLFCCAGVA  123 (331)
T ss_pred             CCcceEEEecCcc
Confidence            3789999999984

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.39  E-value=0.0018  Score=49.81  Aligned_cols=77  Identities=19%  Similarity=0.274  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC----C-cEEecCCCHH-------HHHHhcCCc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----A-DSFLVSRDQD-------EMQAAMGTM  107 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g----~-~~v~~~~~~~-------~~~~~~~~~  107 (220)
                      -.|+.|||.|+ +++|.+.++=+..+|+++++++...+..++..++..    + .++.|-.+.+       .+++..+.+
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V  115 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDV  115 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCc
Confidence            36889999997 799999999888999999999998876666544443    2 3455655544       334444689


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |+++|.+|--
T Consensus       116 ~ILVNNAGI~  125 (300)
T KOG1201|consen  116 DILVNNAGIV  125 (300)
T ss_pred             eEEEeccccc
Confidence            9999998874

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=97.39  E-value=0.0029  Score=48.50  Aligned_cols=99  Identities=14%  Similarity=0.180  Sum_probs=61.8

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCcc--cHHHHHHHc----CCc--EEecCCCHHHHHHh-------
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPS--KKSEAVERL----GAD--SFLVSRDQDEMQAA-------  103 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~~--~~~~~~~~~----g~~--~v~~~~~~~~~~~~-------  103 (220)
                      .+++++|.|+   +++|.++++.+...|++|+++.++.+  +.+...+++    +..  ...|-.+.+.+.++       
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   84 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK   84 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence            4688999996   48999999999999999988765432  222222222    211  12344454444322       


Q ss_pred             cCCccEEEEcCCCc-------c----------------------cHHHHHhccccCCEEEEecCCC
Q 027668          104 MGTMDGIIDTVSAV-------H----------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       104 ~~~~d~vid~~g~~-------~----------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+++|++|+++|..       .                      ..+.++..++++|+++.++...
T Consensus        85 ~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~  150 (258)
T PRK07370         85 WGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLG  150 (258)
T ss_pred             cCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccc
Confidence            24799999998742       1                      1133555666779998887643

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.38  E-value=0.00052  Score=46.52  Aligned_cols=87  Identities=20%  Similarity=0.333  Sum_probs=54.6

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  121 (220)
                      .-+|-|+|+|.+|..+...++..|..|..+.. +.+..+++...++...+.+.      .+....+|++|-++... .+.
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~------~~~~~~aDlv~iavpDd-aI~   82 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDL------EEILRDADLVFIAVPDD-AIA   82 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----T------TGGGCC-SEEEE-S-CC-HHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccccccc------ccccccCCEEEEEechH-HHH
Confidence            35789999999999999999999998887754 44455666555555444332      23345799999999997 577


Q ss_pred             HHHhccccC-----CEEEEe
Q 027668          122 PLIGLLKSQ-----GKLVLL  136 (220)
Q Consensus       122 ~~~~~l~~~-----g~iv~~  136 (220)
                      ..+..|...     |.++.-
T Consensus        83 ~va~~La~~~~~~~g~iVvH  102 (127)
T PF10727_consen   83 EVAEQLAQYGAWRPGQIVVH  102 (127)
T ss_dssp             HHHHHHHCC--S-TT-EEEE
T ss_pred             HHHHHHHHhccCCCCcEEEE
Confidence            777777654     666543

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK07677 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.0013  Score=50.04  Aligned_cols=74  Identities=20%  Similarity=0.313  Sum_probs=51.6

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc-EE--ecCCCHHHHHHh-------cCCcc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD-SF--LVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~~-------~~~~d  108 (220)
                      |++++|.|+ |.+|..+++.+...|++|++++++.++.+.+.+.+   +.. ..  .|-.+.+.+.++       .+++|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            468999997 89999999999999999999999877655553332   221 12  244444433322       24789


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      .+|+++|.
T Consensus        81 ~lI~~ag~   88 (252)
T PRK07677         81 ALINNAAG   88 (252)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.37  E-value=0.002  Score=49.23  Aligned_cols=74  Identities=20%  Similarity=0.263  Sum_probs=52.6

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC----c-EEecCCCHHHHHHh-------cCCccE
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----D-SFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~----~-~v~~~~~~~~~~~~-------~~~~d~  109 (220)
                      +.+++|.|+ |.+|..+++.+...|++|++++++.++.+.+.+++..    . ...|-.+.+.+.+.       .+.+|+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~   81 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV   81 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            468999997 9999999999999999999999988776665444421    1 12344444444322       236899


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|.++|.
T Consensus        82 lv~~ag~   88 (257)
T PRK07024         82 VIANAGI   88 (257)
T ss_pred             EEECCCc
Confidence            9999874

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.37  E-value=0.00083  Score=51.89  Aligned_cols=99  Identities=28%  Similarity=0.289  Sum_probs=56.7

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHH---HHcCCc--EEecCCCHHHHHHhcCCcc
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGAD--SFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~---~~~g~~--~v~~~~~~~~~~~~~~~~d  108 (220)
                      +++. .++||++||-+|+| -|-.+..+++..|++|+.++.+++..+.+.   ++.|..  ..+...+.   +++...||
T Consensus        55 ~~~~-~l~~G~~vLDiGcG-wG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~---~~~~~~fD  129 (273)
T PF02353_consen   55 CEKL-GLKPGDRVLDIGCG-WGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY---RDLPGKFD  129 (273)
T ss_dssp             HTTT-T--TT-EEEEES-T-TSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G---GG---S-S
T ss_pred             HHHh-CCCCCCEEEEeCCC-ccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec---cccCCCCC
Confidence            3444 48999999999987 477778888888999999999988655542   344421  11222222   22233889


Q ss_pred             EEEE-----cCCCc---ccHHHHHhccccCCEEEEec
Q 027668          109 GIID-----TVSAV---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       109 ~vid-----~~g~~---~~~~~~~~~l~~~g~iv~~g  137 (220)
                      .|+.     .+|..   ..++.+-+.|+|||++++-.
T Consensus       130 ~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  130 RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            8864     34432   12566788999999997543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0018  Score=49.19  Aligned_cols=75  Identities=19%  Similarity=0.288  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC--c-EEecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA--D-SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~--~-~v~~~~~~~~~~~~-------~~~~  107 (220)
                      .+.+++|.|+ |.+|..+++.+...|++|++++++++....+.+++   +.  . ...|..+.+.+.+.       .+++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   84 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI   84 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            4678999997 99999999999999999999999876544443332   21  1 12344444433221       2478


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        85 d~vi~~ag~   93 (250)
T PRK07774         85 DYLVNNAAI   93 (250)
T ss_pred             CEEEECCCC
Confidence            999999985

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.35  E-value=0.0031  Score=49.08  Aligned_cols=95  Identities=17%  Similarity=0.193  Sum_probs=70.0

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEc-CchHHHHHHHHHHHCCCeEEEEe-CCcccHHHHHHHcCCcEEecCCCHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~g~~G~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~   99 (220)
                      .++|+..+.+..|+...---.|++|+|+| .+.+|.-++.++...|+.|++.. ++. .                     
T Consensus       137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~-~---------------------  194 (296)
T PRK14188        137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR-D---------------------  194 (296)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC-C---------------------
Confidence            45666666666666554335799999999 59999999999999999999884 332 1                     


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ..+.....|+||-|+|.+..+...+  +++|..++.+|...
T Consensus       195 l~e~~~~ADIVIsavg~~~~v~~~~--lk~GavVIDvGin~  233 (296)
T PRK14188        195 LPAVCRRADILVAAVGRPEMVKGDW--IKPGATVIDVGINR  233 (296)
T ss_pred             HHHHHhcCCEEEEecCChhhcchhe--ecCCCEEEEcCCcc
Confidence            1223346899999999987555443  88999999888643

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.35  E-value=0.0078  Score=41.56  Aligned_cols=96  Identities=15%  Similarity=0.070  Sum_probs=68.9

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .+++........++..+---.|++|+|+|. ..+|.-++.++...|+.|+++.+.....+                    
T Consensus         7 ~~p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~--------------------   66 (140)
T cd05212           7 FVSPVAKAVKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQ--------------------   66 (140)
T ss_pred             ccccHHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHH--------------------
Confidence            355555555555655543357899999996 89999999999999999988875432222                    


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                       +.....|+|+-++|....+.  -+.+++|..++.+|...
T Consensus        67 -~~v~~ADIVvsAtg~~~~i~--~~~ikpGa~Vidvg~~~  103 (140)
T cd05212          67 -SKVHDADVVVVGSPKPEKVP--TEWIKPGATVINCSPTK  103 (140)
T ss_pred             -HHHhhCCEEEEecCCCCccC--HHHcCCCCEEEEcCCCc
Confidence             22346899999999886444  34589998888777644

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK06483 dihydromonapterin reductase; Provisional

Probab=97.35  E-value=0.0022  Score=48.30  Aligned_cols=74  Identities=16%  Similarity=0.135  Sum_probs=51.3

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHH----h---cCCccEEEEc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQA----A---MGTMDGIIDT  113 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~----~---~~~~d~vid~  113 (220)
                      ++++||.|+ |.+|..+++.+...|++|++++++++......+..+...+ .|..+.+.+++    .   .+++|++|.+
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~   81 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHN   81 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEEC
Confidence            467999997 8999999999999999999999876544333344554322 24444333322    2   2369999999


Q ss_pred             CCC
Q 027668          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        82 ag~   84 (236)
T PRK06483         82 ASD   84 (236)
T ss_pred             Ccc
Confidence            875

>PRK08589 short chain dehydrogenase; Validated

Probab=97.35  E-value=0.0016  Score=50.33  Aligned_cols=74  Identities=16%  Similarity=0.318  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHH-------hcCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQA-------AMGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~-------~~~~~  107 (220)
                      +++++||.|+ +.+|..+++.+...|++|++++++ ++.+...+++   +..   ...|-.+.+.+..       ..+++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            5689999997 999999999999999999999988 5444443333   321   1234444433322       22478


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        84 d~li~~Ag~   92 (272)
T PRK08589         84 DVLFNNAGV   92 (272)
T ss_pred             CEEEECCCC
Confidence            999999875

>PRK08643 acetoin reductase; Validated

Probab=97.35  E-value=0.0015  Score=49.90  Aligned_cols=74  Identities=22%  Similarity=0.348  Sum_probs=51.8

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCcc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~d  108 (220)
                      ++++||.|+ |.+|..+++.+...|++|++++++.++.+.+..++   +...   ..|-.+.+.+.+.       .+++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            568999997 99999999999999999999999877655543332   2221   1244444433222       24799


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|.++|.
T Consensus        82 ~vi~~ag~   89 (256)
T PRK08643         82 VVVNNAGV   89 (256)
T ss_pred             EEEECCCC
Confidence            99999875

>PRK07985 oxidoreductase; Provisional

Probab=97.35  E-value=0.007  Score=47.38  Aligned_cols=100  Identities=16%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc--cHHHHH---HHcCCc---EEecCCCHHHHHH-------hc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS--KKSEAV---ERLGAD---SFLVSRDQDEMQA-------AM  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~--~~~~~~---~~~g~~---~v~~~~~~~~~~~-------~~  104 (220)
                      ..++++||.|+ |.+|..+++.+...|++|+++.++..  ..+++.   ++.|..   ...|-.+.+.+.+       ..
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35678999997 99999999999999999998765432  222222   233432   1234444443322       22


Q ss_pred             CCccEEEEcCCCcc--------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          105 GTMDGIIDTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       105 ~~~d~vid~~g~~~--------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +++|+++.++|...                          .++.++..++++|+++.++...
T Consensus       127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~  188 (294)
T PRK07985        127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQ  188 (294)
T ss_pred             CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCch
Confidence            47899999887420                          1223444556678999887653

>PRK08177 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0019  Score=48.39  Aligned_cols=72  Identities=19%  Similarity=0.237  Sum_probs=50.9

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-Cc-EEecCCCHHHHHHhc----C-CccEEEEcCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-AD-SFLVSRDQDEMQAAM----G-TMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~~-~v~~~~~~~~~~~~~----~-~~d~vid~~g  115 (220)
                      ++++|.|+ |.+|..+++.+...|++|+++++++++.+.+ ++++ .. ...|-.+.+.++++.    + ++|++|.++|
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTAL-QALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHH-HhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            46899997 9999999999999999999999988766554 3333 22 123444544443322    2 6999999876


Q ss_pred             C
Q 027668          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        81 ~   81 (225)
T PRK08177         81 I   81 (225)
T ss_pred             c
Confidence            5

>PRK08862 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0021  Score=48.31  Aligned_cols=75  Identities=12%  Similarity=0.154  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc---EEecCCCHHHHHHh-------cC-C
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAA-------MG-T  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~-~  106 (220)
                      ++++++|.|+ +++|.++++.+...|++|+++.++.++.+++.++   .+..   ...|..+.+.++++       .+ .
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4688999997 8999999999999999999999988776655433   3432   12344454444322       24 6


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        84 iD~li~nag~   93 (227)
T PRK08862         84 PDVLVNNWTS   93 (227)
T ss_pred             CCEEEECCcc
Confidence            9999999863

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=97.34  E-value=0.0037  Score=45.50  Aligned_cols=98  Identities=23%  Similarity=0.259  Sum_probs=60.3

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHH---HHcCCcEE-ecCCCHHHHHHhcCCccEEEEc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAV---ERLGADSF-LVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~---~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      .++++.+||-+|+|+ |..++.+++.. +++|+.++.+++..+.+.   ++.+.+.+ +-..+...... .+.||+|+-.
T Consensus        42 ~l~~g~~VLDiGcGt-G~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~  119 (187)
T PRK00107         42 YLPGGERVLDVGSGA-GFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-EEKFDVVTSR  119 (187)
T ss_pred             hcCCCCeEEEEcCCC-CHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-CCCccEEEEc
Confidence            356689999999864 55556666544 569999999987554442   34454221 11112122211 2379999854


Q ss_pred             CCC--cccHHHHHhccccCCEEEEecC
Q 027668          114 VSA--VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 ~g~--~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ...  ...+..+.+.|+++|+++.+-.
T Consensus       120 ~~~~~~~~l~~~~~~LkpGG~lv~~~~  146 (187)
T PRK00107        120 AVASLSDLVELCLPLLKPGGRFLALKG  146 (187)
T ss_pred             cccCHHHHHHHHHHhcCCCeEEEEEeC
Confidence            322  1345678889999999998744

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.33  E-value=0.0051  Score=46.91  Aligned_cols=98  Identities=16%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH-cCCcEE-ecCCC-HHHHHHhc-CCccEEEEcCCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER-LGADSF-LVSRD-QDEMQAAM-GTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~-~g~~~v-~~~~~-~~~~~~~~-~~~d~vid~~g~  116 (220)
                      .+.+|+|.|+ |.+|..+++.+...|++|+++.++.++....... .++..+ .|..+ .+.+.+.. .++|+||.+.|.
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~   95 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF   95 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence            3578999997 9999999998888999999998887654333221 123222 23333 23343434 489999988775


Q ss_pred             ccc-------------HHHHHhcccc--CCEEEEecCC
Q 027668          117 VHP-------------LMPLIGLLKS--QGKLVLLGAP  139 (220)
Q Consensus       117 ~~~-------------~~~~~~~l~~--~g~iv~~g~~  139 (220)
                      ...             ....++.++.  .++++.++..
T Consensus        96 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         96 RRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             CcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            210             1233444433  3688887664

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.32  E-value=0.004  Score=47.08  Aligned_cols=75  Identities=20%  Similarity=0.396  Sum_probs=50.4

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEE-eCCcccHHHHHHHc---CCcE-E--ecCCCHHHHHHhc-------CCc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVERL---GADS-F--LVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~-~~~~~~~~~~~~~~---g~~~-v--~~~~~~~~~~~~~-------~~~  107 (220)
                      ++++||.|+ |.+|..++..+...|++++++ .++.++...+...+   +... +  .|..+.+.+.+..       +++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKI   84 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            468999997 999999999888889999988 87766554443322   2211 1  2444444433322       379


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|.++|..
T Consensus        85 d~vi~~ag~~   94 (247)
T PRK05565         85 DILVNNAGIS   94 (247)
T ss_pred             CEEEECCCcC
Confidence            9999988753

>PLN02928 oxidoreductase family protein

Probab=97.32  E-value=0.002  Score=51.58  Aligned_cols=95  Identities=19%  Similarity=0.252  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-----CcEEec-CCCHHHHHHhcCCccEEEEcCC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-----ADSFLV-SRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-----~~~v~~-~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      .|+++.|+|.|.+|+.+++.++.+|++|++.+++..+...  ..++     .....+ ......+.++....|+|+.++.
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lP  235 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPE--DGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCT  235 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhh--hhhccccccccccccccCcccCHHHHHhhCCEEEECCC
Confidence            5789999999999999999999999999999876332111  1111     000000 0112234455567899998876


Q ss_pred             Ccc----cH-HHHHhccccCCEEEEecC
Q 027668          116 AVH----PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       116 ~~~----~~-~~~~~~l~~~g~iv~~g~  138 (220)
                      ...    .+ ...+..|+++..+|.++.
T Consensus       236 lt~~T~~li~~~~l~~Mk~ga~lINvaR  263 (347)
T PLN02928        236 LTKETAGIVNDEFLSSMKKGALLVNIAR  263 (347)
T ss_pred             CChHhhcccCHHHHhcCCCCeEEEECCC
Confidence            432    12 356778899988888874

>PRK06138 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0016  Score=49.55  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=52.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc--CCc-EE--ecCCCHHHHHHh-------cCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--GAD-SF--LVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~--g~~-~v--~~~~~~~~~~~~-------~~~~d  108 (220)
                      ++++++|.|+ |.+|..+++.+...|++|+++.++.++.+.....+  +.. ..  .|-.+.+.+++.       .+++|
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   83 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRLD   83 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4678999997 99999999988889999999999877655544433  321 11  244444444332       24799


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      .+|.++|.
T Consensus        84 ~vi~~ag~   91 (252)
T PRK06138         84 VLVNNAGF   91 (252)
T ss_pred             EEEECCCC
Confidence            99999985

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=97.32  E-value=0.0019  Score=48.29  Aligned_cols=95  Identities=18%  Similarity=0.144  Sum_probs=59.7

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe---------cCCC-----HHHH---HH
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL---------VSRD-----QDEM---QA  102 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~---------~~~~-----~~~~---~~  102 (220)
                      ..++.+||+.|+|. |.-++-+|. .|++|+.++.++...+.+.++.+.....         ....     .+..   ..
T Consensus        35 ~~~~~rvL~~gCG~-G~da~~LA~-~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         35 LPAGSRVLVPLCGK-SLDMLWLAE-QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCCeEEEeCCCC-hHhHHHHHh-CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            35678999999874 776666664 8999999999998777765544432110         0000     0000   00


Q ss_pred             hcCCccEEEEcCCCc--------ccHHHHHhccccCCEEEEe
Q 027668          103 AMGTMDGIIDTVSAV--------HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       103 ~~~~~d~vid~~g~~--------~~~~~~~~~l~~~g~iv~~  136 (220)
                      ..+.||.|+|...-.        ..+....+.|++||++.++
T Consensus       113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~  154 (218)
T PRK13255        113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLV  154 (218)
T ss_pred             cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            113689999966422        1256678889999975543

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0049  Score=48.17  Aligned_cols=76  Identities=16%  Similarity=0.243  Sum_probs=49.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-HHHHH---HHcCCcE---EecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAV---ERLGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-~~~~~---~~~g~~~---v~~~~~~~~~~~~-------~~  105 (220)
                      .++.++||.|+ |.+|..+++.+...|++|+++.++.+. .+...   +..+...   ..|-.+.+.+.+.       .+
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~  123 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELG  123 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            45789999997 999999999998899999998887532 22221   2223322   1244444333222       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|.++|.
T Consensus       124 ~iD~lI~~Ag~  134 (290)
T PRK06701        124 RLDILVNNAAF  134 (290)
T ss_pred             CCCEEEECCcc
Confidence            78999998875

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.32  E-value=0.0034  Score=46.80  Aligned_cols=44  Identities=30%  Similarity=0.395  Sum_probs=34.7

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      ++....--.|.+|+|.|.|.+|+.+++.+...|++++.+..++.
T Consensus        14 ~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          14 MKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             HHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            33433224688999999999999999999999997777666655

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.31  E-value=0.0036  Score=47.18  Aligned_cols=75  Identities=19%  Similarity=0.302  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCcEE---ecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADSF---LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~~v---~~~~~~~~~~~~-------~~~~  107 (220)
                      ++.++||.|+ |.+|..+++.+...|.+|+++.+++++.+....   ..+....   .|..+.+.+.+.       .+.+
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4578999997 999999999999999999999998776544332   2233221   244444433222       2368


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |.+|.++|.
T Consensus        84 d~vi~~ag~   92 (246)
T PRK05653         84 DILVNNAGI   92 (246)
T ss_pred             CEEEECCCc
Confidence            999999866

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.31  E-value=0.0023  Score=48.87  Aligned_cols=75  Identities=20%  Similarity=0.328  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.++++...   ..|-.+.+.+.+.       .+.+|++
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   84 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDIL   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            3578999997 999999999999999999999999887666655554221   1233344333322       2478999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |.++|.
T Consensus        85 i~~ag~   90 (257)
T PRK07067         85 FNNAAL   90 (257)
T ss_pred             EECCCc
Confidence            998874

>PLN03075 nicotianamine synthase; Provisional

Probab=97.31  E-value=0.0024  Score=49.58  Aligned_cols=97  Identities=18%  Similarity=0.163  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHHcCC-----c-EEecCCCHHHHHHhcCCccEEEE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERLGA-----D-SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~g~-----~-~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .+.++|+-+|+|+.++.++.+++.+.  .+++.++.+++..+.+.+.+..     + -.+...+........++||+||-
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~  201 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL  201 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence            37799999999999998888887554  4799999998877666544421     1 11111121111111358999987


Q ss_pred             cCC------C-cccHHHHHhccccCCEEEEec
Q 027668          113 TVS------A-VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g------~-~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      .+-      . ...++...+.|++||.++.=.
T Consensus       202 ~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        202 AALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             ecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            641      1 124677888999999998754

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.30  E-value=0.0032  Score=45.04  Aligned_cols=92  Identities=25%  Similarity=0.366  Sum_probs=62.1

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEec--CCCHHHHHHhcCCccEEEEcCCCc--c-
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV--SRDQDEMQAAMGTMDGIIDTVSAV--H-  118 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~--~~~~~~~~~~~~~~d~vid~~g~~--~-  118 (220)
                      +|.|+|+ |-+|...++-++.+|.+|+++++++.+....   -+. .++.  --+.+.+.+...|+|+||++.|..  + 
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---~~~-~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~   77 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---QGV-TILQKDIFDLTSLASDLAGHDAVISAFGAGASDN   77 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---ccc-eeecccccChhhhHhhhcCCceEEEeccCCCCCh
Confidence            5788997 9999999999999999999999998765332   121 1221  112334445556999999998876  1 


Q ss_pred             ------cHHHHHhccccC--CEEEEecCCC
Q 027668          119 ------PLMPLIGLLKSQ--GKLVLLGAPE  140 (220)
Q Consensus       119 ------~~~~~~~~l~~~--g~iv~~g~~~  140 (220)
                            ..+..+..++..  -|+..+|.-.
T Consensus        78 ~~~~~k~~~~li~~l~~agv~RllVVGGAG  107 (211)
T COG2910          78 DELHSKSIEALIEALKGAGVPRLLVVGGAG  107 (211)
T ss_pred             hHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence                  122355556552  4777777643

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.29  E-value=0.0026  Score=47.89  Aligned_cols=70  Identities=23%  Similarity=0.367  Sum_probs=54.5

Q ss_pred             EEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc--HHHHHHHcCCcEEe-cCCCHHHHHHhcCCccEEEEcCCC
Q 027668           46 VGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK--KSEAVERLGADSFL-VSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~--~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      |+|.|+ |.+|..+++.+...+.+|.+..|+..+  .+.+ +..|++.+. |..+.+.+.+...|+|.||.+.+.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l-~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQL-QALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHH-HHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhh-hcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            689997 999999999999988999999998742  3333 567886543 555677787778899999999884

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=97.29  E-value=0.012  Score=44.86  Aligned_cols=154  Identities=17%  Similarity=0.162  Sum_probs=83.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCC----
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA----  116 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~----  116 (220)
                      .++.+||-+|+|+ |..+..+++ .|.+++.++.+++..+.+.+.......+..+- +...-..+.||+|+....-    
T Consensus        41 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~V~s~~~l~~~~  117 (251)
T PRK10258         41 RKFTHVLDAGCGP-GWMSRYWRE-RGSQVTALDLSPPMLAQARQKDAADHYLAGDI-ESLPLATATFDLAWSNLAVQWCG  117 (251)
T ss_pred             cCCCeEEEeeCCC-CHHHHHHHH-cCCeEEEEECCHHHHHHHHhhCCCCCEEEcCc-ccCcCCCCcEEEEEECchhhhcC
Confidence            4578899999875 665555544 68899999999887776644433222221111 1111111269999865432    


Q ss_pred             --cccHHHHHhccccCCEEEEecCCCCCcccCccccccC-CcEEEEeeccCHHHHHHHHHHHHhCCcceeE--EEEeccc
Q 027668          117 --VHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG-EKIVGGSLIGGLKETQEMIDFAAKHNIRADI--EVIPADY  191 (220)
Q Consensus       117 --~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~  191 (220)
                        ...+..+.+.|+++|.++......+...- ....+.. +..-.+....+.+++...   +..-.+....  ....+++
T Consensus       118 d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~e-l~~~~~~~~~~~~~~~~~~~~~l~~~---l~~~~~~~~~~~~~~~f~~  193 (251)
T PRK10258        118 NLSTALRELYRVVRPGGVVAFTTLVQGSLPE-LHQAWQAVDERPHANRFLPPDAIEQA---LNGWRYQHHIQPITLWFDD  193 (251)
T ss_pred             CHHHHHHHHHHHcCCCeEEEEEeCCCCchHH-HHHHHHHhccCCccccCCCHHHHHHH---HHhCCceeeeeEEEEECCC
Confidence              12366778899999999987654332110 0000000 000111222343444443   3333344333  4667888


Q ss_pred             HHHHHHHHHc
Q 027668          192 VNTAMERLAK  201 (220)
Q Consensus       192 i~~a~~~~~~  201 (220)
                      ..+.++.++.
T Consensus       194 ~~~~l~~lk~  203 (251)
T PRK10258        194 ALSAMRSLKG  203 (251)
T ss_pred             HHHHHHHHHH
Confidence            8888888864

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.29  E-value=0.0018  Score=48.83  Aligned_cols=76  Identities=21%  Similarity=0.347  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .+.+++|.|+ |.+|..++..+...|++|+++++++++.++..+++   +...   ..|..+.+.+.+.       .+++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            3578999997 99999999999899999999999877655443332   3221   1233344433322       2479


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |.+|.++|..
T Consensus        86 d~vi~~ag~~   95 (239)
T PRK07666         86 DILINNAGIS   95 (239)
T ss_pred             cEEEEcCccc
Confidence            9999998753

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.29  E-value=0.0021  Score=49.11  Aligned_cols=76  Identities=22%  Similarity=0.308  Sum_probs=53.6

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~  106 (220)
                      .+++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+.+   +..   ...|..+.+.+++.       .++
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35689999997 99999999999999999999999877655543322   221   12344554444221       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|.+|.++|.
T Consensus        90 id~vi~~ag~   99 (259)
T PRK08213         90 VDILVNNAGA   99 (259)
T ss_pred             CCEEEECCCC
Confidence            8999999875

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.002  Score=49.42  Aligned_cols=74  Identities=14%  Similarity=0.265  Sum_probs=50.9

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCCcc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~d  108 (220)
                      +.++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+.   .+...   ..|..+.+.+.+.       .+++|
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            357899997 9999999999999999999999987655444332   23221   2244444433322       23789


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|.++|.
T Consensus        81 ~vi~~ag~   88 (263)
T PRK06181         81 ILVNNAGI   88 (263)
T ss_pred             EEEECCCc
Confidence            99999875

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=97.28  E-value=0.0028  Score=50.33  Aligned_cols=75  Identities=15%  Similarity=0.169  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHHcC---CcE-EecCCCHHHHHHhcCCccEEEEcC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERLG---ADS-FLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~g---~~~-v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      .|.+|||.|+ |.+|..+++.+...|  .+|++.++++.+...+.+.++   ... ..|-.+.+.+.+...++|+||.++
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~A   82 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA   82 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECc
Confidence            4688999997 999999999888776  588888877654433333332   121 125556667766667899999998


Q ss_pred             CC
Q 027668          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      |.
T Consensus        83 g~   84 (324)
T TIGR03589        83 AL   84 (324)
T ss_pred             cc
Confidence            75

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.28  E-value=0.002  Score=49.34  Aligned_cols=72  Identities=19%  Similarity=0.284  Sum_probs=50.9

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE--EecCCCHHHHHHh-------cCCccEEE
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS--FLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~--v~~~~~~~~~~~~-------~~~~d~vi  111 (220)
                      ++||.|+ |++|..+++.+...|++|+++++++++.+++.+++   +...  ..|-.+.+.++++       .+++|++|
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li   81 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV   81 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            5899997 89999999999999999999999877665554433   2111  2344444433322       24799999


Q ss_pred             EcCCC
Q 027668          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        82 ~naG~   86 (259)
T PRK08340         82 WNAGN   86 (259)
T ss_pred             ECCCC
Confidence            99885

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.28  E-value=0.0013  Score=45.15  Aligned_cols=92  Identities=20%  Similarity=0.327  Sum_probs=54.0

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccH-------------------H---HHHHHcC-CcEE--e-cCC
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKK-------------------S---EAVERLG-ADSF--L-VSR   95 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~-------------------~---~~~~~~g-~~~v--~-~~~   95 (220)
                      ..+|+|+|+|++|..++..+-..|. ++++++.+.-+.                   +   +..+++. ...+  + ..-
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~   81 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKI   81 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeeccc
Confidence            4689999999999999999999999 788887752211                   1   1111222 1111  1 111


Q ss_pred             CHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEE
Q 027668           96 DQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLV  134 (220)
Q Consensus        96 ~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv  134 (220)
                      ..+...++..++|+||+|...........+..+..+.-.
T Consensus        82 ~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~  120 (135)
T PF00899_consen   82 DEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPF  120 (135)
T ss_dssp             SHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EE
T ss_pred             ccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCE
Confidence            234444444589999999988653333444444444433

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.27  E-value=0.0016  Score=46.29  Aligned_cols=89  Identities=22%  Similarity=0.327  Sum_probs=58.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      .+|-++|.|.+|...++-+...|.+|++.++++++.+.+. +.|+..+  . +   ..+.....|+||-|+.........
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~-~~g~~~~--~-s---~~e~~~~~dvvi~~v~~~~~v~~v   74 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALA-EAGAEVA--D-S---PAEAAEQADVVILCVPDDDAVEAV   74 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHH-HTTEEEE--S-S---HHHHHHHBSEEEE-SSSHHHHHHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhH-Hhhhhhh--h-h---hhhHhhcccceEeecccchhhhhh
Confidence            3678999999999999999999999999999998887774 4464433  2 1   222233569999999886544443


Q ss_pred             ------HhccccCCEEEEecCC
Q 027668          124 ------IGLLKSQGKLVLLGAP  139 (220)
Q Consensus       124 ------~~~l~~~g~iv~~g~~  139 (220)
                            +..++++..++.++..
T Consensus        75 ~~~~~i~~~l~~g~iiid~sT~   96 (163)
T PF03446_consen   75 LFGENILAGLRPGKIIIDMSTI   96 (163)
T ss_dssp             HHCTTHGGGS-TTEEEEE-SS-
T ss_pred             hhhhHHhhccccceEEEecCCc
Confidence                  3345556666666543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08017 oxidoreductase; Provisional

Probab=97.27  E-value=0.0033  Score=47.92  Aligned_cols=72  Identities=19%  Similarity=0.288  Sum_probs=52.1

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHH----h---c-CCccEEEEc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQA----A---M-GTMDGIIDT  113 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~----~---~-~~~d~vid~  113 (220)
                      ++++|.|+ |.+|+.+++.+...|++|++++++.++.+.+ +..+...+ .|..+.+.+.+    .   . +.+|.++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM-NSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH-HhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            57999998 9999999999999999999999988776655 45565433 34444433222    1   2 368899988


Q ss_pred             CCC
Q 027668          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      .|.
T Consensus        82 ag~   84 (256)
T PRK08017         82 AGF   84 (256)
T ss_pred             CCC
Confidence            775

>PRK06197 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0015  Score=51.37  Aligned_cols=76  Identities=26%  Similarity=0.290  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-----CCc--E-EecCCCHHHHHHh-------c
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GAD--S-FLVSRDQDEMQAA-------M  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-----g~~--~-v~~~~~~~~~~~~-------~  104 (220)
                      ..+++++|.|+ |.+|..+++.+...|++|++++++.++.+.+.+++     +..  . ..|-.+.+.++++       .
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            35689999997 99999999999989999999999876654433222     111  1 2244444443322       2


Q ss_pred             CCccEEEEcCCC
Q 027668          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~vid~~g~  116 (220)
                      +++|++|.++|.
T Consensus        94 ~~iD~li~nAg~  105 (306)
T PRK06197         94 PRIDLLINNAGV  105 (306)
T ss_pred             CCCCEEEECCcc
Confidence            379999999874

>PRK07069 short chain dehydrogenase; Validated

Probab=97.26  E-value=0.0051  Score=46.68  Aligned_cols=72  Identities=18%  Similarity=0.279  Sum_probs=48.6

Q ss_pred             EEEEcC-chHHHHHHHHHHHCCCeEEEEeCC-cccHHHHHHHcC----Cc----EEecCCCHHHHHHh-------cCCcc
Q 027668           46 VGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVERLG----AD----SFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~-~~~~~~~~~~~g----~~----~v~~~~~~~~~~~~-------~~~~d  108 (220)
                      ++|.|+ |.+|..+++.+...|++|++++++ .++.+.+.+++.    ..    ...|..+.+.+.+.       .+++|
T Consensus         2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   81 (251)
T PRK07069          2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGLS   81 (251)
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCcc
Confidence            788986 999999999999999999999987 554444433332    11    12244454433322       24789


Q ss_pred             EEEEcCCCc
Q 027668          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~vid~~g~~  117 (220)
                      ++|.++|..
T Consensus        82 ~vi~~ag~~   90 (251)
T PRK07069         82 VLVNNAGVG   90 (251)
T ss_pred             EEEECCCcC
Confidence            999998753

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0053  Score=46.71  Aligned_cols=75  Identities=15%  Similarity=0.216  Sum_probs=48.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEE-eCCcccHHHHHHHc---CCc-EE--ecCCCHHHHHH----hc-----
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVERL---GAD-SF--LVSRDQDEMQA----AM-----  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~-~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~----~~-----  104 (220)
                      .+.+++|.|+ |.+|..+++.+...|++|++. .++.++.+...+.+   +.. .+  .|-.+.+.+.+    ..     
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   84 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQI   84 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhcc
Confidence            3578999997 999999999998899988775 56655444433332   221 11  24444433322    11     


Q ss_pred             ----CCccEEEEcCCC
Q 027668          105 ----GTMDGIIDTVSA  116 (220)
Q Consensus       105 ----~~~d~vid~~g~  116 (220)
                          +++|++|.++|.
T Consensus        85 ~~~~~~id~vi~~ag~  100 (254)
T PRK12746         85 RVGTSEIDILVNNAGI  100 (254)
T ss_pred             ccCCCCccEEEECCCC
Confidence                258999999876

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0029  Score=48.88  Aligned_cols=75  Identities=21%  Similarity=0.349  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-----Cc-EE--ecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-----AD-SF--LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-----~~-~v--~~~~~~~~~~~~-------~~  105 (220)
                      +++++||.|+ |.+|..+++.+...|++|++++++.++.+...+++.     .. .+  .|-.+.+.+.+.       .+
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG   85 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4689999997 999999999999999999999988765544433321     11 12  244444433222       23


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|.++|.
T Consensus        86 ~~d~li~~ag~   96 (276)
T PRK05875         86 RLHGVVHCAGG   96 (276)
T ss_pred             CCCEEEECCCc
Confidence            78999999874

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0027  Score=48.35  Aligned_cols=74  Identities=23%  Similarity=0.360  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-c---EEecCCCHHHHHHh-------cCCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-D---SFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~---~v~~~~~~~~~~~~-------~~~~d~  109 (220)
                      +++++||.|+ |.+|..+++.+...|++|++++++.+..... .+... .   ...|-.+.+.+.++       .+++|+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVA-AQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            5789999997 9999999999999999999999886543322 33321 1   12344444433322       237899


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|.++|.
T Consensus        93 vi~~ag~   99 (255)
T PRK06841         93 LVNSAGV   99 (255)
T ss_pred             EEECCCC
Confidence            9999985

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.26  E-value=0.0035  Score=49.78  Aligned_cols=94  Identities=20%  Similarity=0.263  Sum_probs=65.1

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHH-CCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~-~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      -.+++|+|+|+ |.+|..+++.+.. .|. +++++.++.++...+.++++...+      ..+.+...+.|+|+-+++.+
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i------~~l~~~l~~aDiVv~~ts~~  226 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKI------LSLEEALPEADIVVWVASMP  226 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccH------HhHHHHHccCCEEEECCcCC
Confidence            46789999998 9999999998864 566 899999887777776666542211      12334445899999999876


Q ss_pred             ccHHHHHhccccCCEEEEecCCC
Q 027668          118 HPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       118 ~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ..+..--..++++-.++.++.+.
T Consensus       227 ~~~~I~~~~l~~~~~viDiAvPR  249 (340)
T PRK14982        227 KGVEIDPETLKKPCLMIDGGYPK  249 (340)
T ss_pred             cCCcCCHHHhCCCeEEEEecCCC
Confidence            44312223456677777777764

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.26  E-value=0.0043  Score=46.88  Aligned_cols=75  Identities=24%  Similarity=0.331  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      ++.+++|.|+ |.+|+.++..+...|+.|+...++.++.+.+...++...   ..|-.+.+.+++.       .+++|.+
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDIL   84 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4678999997 999999999999999998888888777666655554321   1233444433322       2479999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |.++|.
T Consensus        85 i~~ag~   90 (245)
T PRK12936         85 VNNAGI   90 (245)
T ss_pred             EECCCC
Confidence            999885

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.25  E-value=0.01  Score=43.48  Aligned_cols=99  Identities=16%  Similarity=0.153  Sum_probs=59.3

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHH---HcCCc--EEecCCCHHHHHHhcCCccEEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .++++++||=+|+|. |..++.+++.. +.+|+.++.+++..+.+.+   +++..  .++..+..+........+|.++-
T Consensus        37 ~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~  115 (196)
T PRK07402         37 RLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCI  115 (196)
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEE
Confidence            467889998888763 55555566554 4699999999876655533   34532  23322222222233234455443


Q ss_pred             cCCC--cccHHHHHhccccCCEEEEecC
Q 027668          113 TVSA--VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~g~--~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ..+.  ...++.+.+.|+++|+++....
T Consensus       116 ~~~~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        116 EGGRPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             ECCcCHHHHHHHHHHhcCCCeEEEEEee
Confidence            2222  1346778889999999988743

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.25  E-value=0.0013  Score=57.27  Aligned_cols=77  Identities=22%  Similarity=0.360  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc--------------------cHHHHHHHcCCcEEecCCC-HH-
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS--------------------KKSEAVERLGADSFLVSRD-QD-   98 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~--------------------~~~~~~~~~g~~~v~~~~~-~~-   98 (220)
                      ..+++|+|+|+|+.|+.++..+...|.+|+++++.+.                    +.....+++|.+...+..- .+ 
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            3588999999999999999999999999999987543                    0122335677654333211 01 


Q ss_pred             HHHHhcCCccEEEEcCCCc
Q 027668           99 EMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        99 ~~~~~~~~~d~vid~~g~~  117 (220)
                      .+.....+||.||.++|..
T Consensus       405 ~~~~~~~~~DavilAtGa~  423 (654)
T PRK12769        405 SLESLLEDYDAVFVGVGTY  423 (654)
T ss_pred             CHHHHHhcCCEEEEeCCCC
Confidence            1222234799999999874

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.24  E-value=0.0016  Score=51.89  Aligned_cols=76  Identities=26%  Similarity=0.426  Sum_probs=50.5

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcc---------------------cHHH---HHHHcCCcE-E--ec-
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS---------------------KKSE---AVERLGADS-F--LV-   93 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~---------------------~~~~---~~~~~g~~~-v--~~-   93 (220)
                      ..+|+|+|+|++|..++..+...|. ++.+++.+.-                     +.+.   ..++++... +  +. 
T Consensus        24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~  103 (339)
T PRK07688         24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQ  103 (339)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence            4789999999999999999999999 8888887631                     1111   112333211 1  11 


Q ss_pred             CCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           94 SRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        94 ~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      .-..+...++..++|+|+||+.+..
T Consensus       104 ~~~~~~~~~~~~~~DlVid~~Dn~~  128 (339)
T PRK07688        104 DVTAEELEELVTGVDLIIDATDNFE  128 (339)
T ss_pred             cCCHHHHHHHHcCCCEEEEcCCCHH
Confidence            1123444555678999999998874

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.24  E-value=0.0052  Score=47.53  Aligned_cols=96  Identities=19%  Similarity=0.259  Sum_probs=69.8

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+..+....++...---.|++|+|+|. +.+|.-++.++...|+.|++..+...                     .+
T Consensus       137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~---------------------~l  195 (285)
T PRK14189        137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR---------------------DL  195 (285)
T ss_pred             CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC---------------------CH
Confidence            456666666666665543357999999997 56699999999999999987543221                     12


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++.....|+|+-++|.+..+..  +.++++..++.+|...
T Consensus       196 ~~~~~~ADIVV~avG~~~~i~~--~~ik~gavVIDVGin~  233 (285)
T PRK14189        196 AAHTRQADIVVAAVGKRNVLTA--DMVKPGATVIDVGMNR  233 (285)
T ss_pred             HHHhhhCCEEEEcCCCcCccCH--HHcCCCCEEEEccccc
Confidence            2334578999999998865443  7789999999988643

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.23  E-value=0.006  Score=43.10  Aligned_cols=96  Identities=20%  Similarity=0.311  Sum_probs=61.9

Q ss_pred             cccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHH
Q 027668           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~   99 (220)
                      ..++|+..+.+..++...---.|++|+|+|. ..+|.-++.+++..|+.|++........++                  
T Consensus        14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~------------------   75 (160)
T PF02882_consen   14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQE------------------   75 (160)
T ss_dssp             SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHH------------------
T ss_pred             CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccc------------------
Confidence            4567776777777776553468999999996 789999999999999999887665433322                  


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCC
Q 027668          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       100 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                         .....|+||-++|.+..+.  -+.++++..++.+|..
T Consensus        76 ---~~~~ADIVVsa~G~~~~i~--~~~ik~gavVIDvG~~  110 (160)
T PF02882_consen   76 ---ITRRADIVVSAVGKPNLIK--ADWIKPGAVVIDVGIN  110 (160)
T ss_dssp             ---HHTTSSEEEE-SSSTT-B---GGGS-TTEEEEE--CE
T ss_pred             ---eeeeccEEeeeeccccccc--cccccCCcEEEecCCc
Confidence               2346889999999886433  3467888888887764

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.22  E-value=0.0055  Score=44.63  Aligned_cols=99  Identities=20%  Similarity=0.205  Sum_probs=58.7

Q ss_pred             HhccCCCCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHH---HHHHhc--CCc
Q 027668           35 RFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADSF-LVSRDQD---EMQAAM--GTM  107 (220)
Q Consensus        35 ~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~---~~~~~~--~~~  107 (220)
                      ++...+++|++||.+|+|+-+.......+..+ .++++++.++..     +..+...+ .+..+.+   .+.+..  +++
T Consensus        25 ~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~   99 (188)
T TIGR00438        25 QKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKV   99 (188)
T ss_pred             HHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence            34555789999999999875544333333333 389999988753     11233322 1332222   222222  279


Q ss_pred             cEEEE-cC----CC------------cccHHHHHhccccCCEEEEecC
Q 027668          108 DGIID-TV----SA------------VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       108 d~vid-~~----g~------------~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      |+|+. ..    |.            ...+..+.+.|+++|+++....
T Consensus       100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438       100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            99995 22    22            1245667889999999998643

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.22  E-value=0.0042  Score=53.13  Aligned_cols=91  Identities=20%  Similarity=0.196  Sum_probs=64.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEEcCCCcccHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~~~  121 (220)
                      ++++|+|.|.+|+.+++.++..|.++++++.++++.+++ ++.|...++ |..+++..++.. +.+|.++-++++.+...
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~-~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~  496 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDEL-RERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG  496 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence            789999999999999999999999999999999888777 567876555 344455554432 38998887777653211


Q ss_pred             ---HHHhccccCCEEEE
Q 027668          122 ---PLIGLLKSQGKLVL  135 (220)
Q Consensus       122 ---~~~~~l~~~g~iv~  135 (220)
                         .+.+...+..+++.
T Consensus       497 ~iv~~~~~~~~~~~iia  513 (558)
T PRK10669        497 EIVASAREKRPDIEIIA  513 (558)
T ss_pred             HHHHHHHHHCCCCeEEE
Confidence               23333444455544

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.22  E-value=0.0024  Score=50.62  Aligned_cols=75  Identities=21%  Similarity=0.272  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---C----CcEE-ecCCCHHHHHHhcCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G----ADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g----~~~v-~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++.++.++........   +    ...+ .|-.+.+.+.+...++|+||.
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            4689999997 99999999999999999988887765433321111   1    1111 244455556666668999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      +++.
T Consensus        84 ~A~~   87 (325)
T PLN02989         84 TASP   87 (325)
T ss_pred             eCCC
Confidence            9874

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=97.22  E-value=0.003  Score=50.70  Aligned_cols=75  Identities=21%  Similarity=0.245  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC----Cc-EEecCCCHHHHHHhcC--CccEEEEc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----AD-SFLVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g----~~-~v~~~~~~~~~~~~~~--~~d~vid~  113 (220)
                      ++.+|||.|+ |.+|..+++.+...|.+|+++++++.......+.++    .. ...|-.+.+.+.++..  ++|+||.+
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih~   82 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHL   82 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEEC
Confidence            4688999997 999999999999999999999887664332222222    22 1224455555555544  68999999


Q ss_pred             CCC
Q 027668          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      ++.
T Consensus        83 A~~   85 (349)
T TIGR02622        83 AAQ   85 (349)
T ss_pred             Ccc
Confidence            874

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK05855 short chain dehydrogenase; Validated

Probab=97.22  E-value=0.0044  Score=53.04  Aligned_cols=76  Identities=22%  Similarity=0.245  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .+.++||.|+ |.+|..+++-+...|++|++++++.++.+++.+.   .|...   ..|-.+.+.+.++       .+.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  393 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVP  393 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            4578999997 9999999999999999999999987766554332   23211   1344454443322       2469


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|+++|..
T Consensus       394 d~lv~~Ag~~  403 (582)
T PRK05855        394 DIVVNNAGIG  403 (582)
T ss_pred             cEEEECCccC
Confidence            9999999863

>PRK06720 hypothetical protein; Provisional

Probab=97.22  E-value=0.0034  Score=44.92  Aligned_cols=76  Identities=21%  Similarity=0.268  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHH-------hcCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQA-------AMGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~-------~~~~~  107 (220)
                      ++..++|.|+ +++|..++..+...|++|++++++.+..+...+++   +...   ..|..+.+.+.+       ..+++
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i   94 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI   94 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5788999997 78999999999899999999998876554443332   4221   223334333322       12478


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|+++|..
T Consensus        95 DilVnnAG~~  104 (169)
T PRK06720         95 DMLFQNAGLY  104 (169)
T ss_pred             CEEEECCCcC
Confidence            8999888753

>PRK07035 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.0027  Score=48.27  Aligned_cols=75  Identities=20%  Similarity=0.308  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc-EE--ecCCCHHHHHH-------hcCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD-SF--LVSRDQDEMQA-------AMGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v--~~~~~~~~~~~-------~~~~~  107 (220)
                      ++++++|.|+ |.+|..+++.+...|++|+.++++.++.+.+.+++   +.. ..  .|..+.+.+.+       ..+.+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   86 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL   86 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4578999997 99999999999999999999999876655554432   321 11  24444433322       22468


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |+++.++|.
T Consensus        87 d~li~~ag~   95 (252)
T PRK07035         87 DILVNNAAA   95 (252)
T ss_pred             CEEEECCCc
Confidence            999999874

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.21  E-value=0.0022  Score=47.25  Aligned_cols=34  Identities=26%  Similarity=0.456  Sum_probs=30.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      ...+|+|+|+|++|..++..+...|. ++++++.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            34789999999999999999999999 78888887

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.21  E-value=0.0031  Score=48.22  Aligned_cols=78  Identities=18%  Similarity=0.230  Sum_probs=51.5

Q ss_pred             CCCCCEEEEEcC-chHHHHHHHHHHHCC-CeEEEEeCCccc-HHHHHHHc---CC-c-EE--ecCCCHHH----HHHhc-
Q 027668           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSK-KSEAVERL---GA-D-SF--LVSRDQDE----MQAAM-  104 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~~~~~~g-~~v~~~~~~~~~-~~~~~~~~---g~-~-~v--~~~~~~~~----~~~~~-  104 (220)
                      +..+++|||.|+ |++|..+++-+...| ++|+++++++++ .+.+.+++   +. . .+  .|..+.+.    +++.. 
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~   84 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA   84 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh
Confidence            456789999997 999999999877775 899999998775 55443333   32 1 11  34444332    22222 


Q ss_pred             -CCccEEEEcCCCc
Q 027668          105 -GTMDGIIDTVSAV  117 (220)
Q Consensus       105 -~~~d~vid~~g~~  117 (220)
                       +++|++|.++|..
T Consensus        85 ~g~id~li~~ag~~   98 (253)
T PRK07904         85 GGDVDVAIVAFGLL   98 (253)
T ss_pred             cCCCCEEEEeeecC
Confidence             4799999887663

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=97.21  E-value=0.0091  Score=40.48  Aligned_cols=91  Identities=14%  Similarity=0.349  Sum_probs=59.6

Q ss_pred             EEEEcC-chHHHHHHHHHHHCC--CeEEEEeC--CcccHHHHHHHcCCcEEecCCCH--HHHH-----------------
Q 027668           46 VGVVGL-GGLGHVAVKFAKAMG--VKVTVIST--SPSKKSEAVERLGADSFLVSRDQ--DEMQ-----------------  101 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~~~~~~g--~~v~~~~~--~~~~~~~~~~~~g~~~v~~~~~~--~~~~-----------------  101 (220)
                      |.|+|+ |++|..+.++.+.+.  .+|+...-  +-+.+.+.+++|....+.-.++.  +.++                 
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~   80 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE   80 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence            578898 999999999999987  46665444  33356666678887776554432  2222                 


Q ss_pred             ---Hhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668          102 ---AAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       102 ---~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                         ++.  ..+|+|+.+..+...+.-.+..++.+-++.+.
T Consensus        81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaLA  120 (129)
T PF02670_consen   81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIALA  120 (129)
T ss_dssp             HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE-
T ss_pred             HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEEe
Confidence               211  27999999886666788888888877776653

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.20  E-value=0.0021  Score=48.77  Aligned_cols=76  Identities=26%  Similarity=0.442  Sum_probs=48.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHH----------------------HHHcCCc-EE--ec-CC
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA----------------------VERLGAD-SF--LV-SR   95 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~----------------------~~~~g~~-~v--~~-~~   95 (220)
                      +.+|+|+|+|++|..++..+...|. ++++++.+.-+...+                      .++++.. .+  ++ .-
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i  103 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKL  103 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            3789999999999999999999999 777777653221111                      1122211 11  11 11


Q ss_pred             CHHHHHHhcCCccEEEEcCCCcc
Q 027668           96 DQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        96 ~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      +.+...++..++|+||||..+..
T Consensus       104 ~~~~~~~~~~~~DlVvd~~D~~~  126 (240)
T TIGR02355       104 DDAELAALIAEHDIVVDCTDNVE  126 (240)
T ss_pred             CHHHHHHHhhcCCEEEEcCCCHH
Confidence            12344455568999999999875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.20  E-value=0.0018  Score=46.65  Aligned_cols=32  Identities=28%  Similarity=0.534  Sum_probs=28.3

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~   76 (220)
                      +|+|+|+|++|..+++.+...|. ++++++.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 688888775

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.19  E-value=0.0056  Score=40.71  Aligned_cols=90  Identities=19%  Similarity=0.281  Sum_probs=60.9

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEEcCCCcccHHH-
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVHPLMP-  122 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~~~~-  122 (220)
                      |+|+|.|.+|..+++.++..+.++++++.++++.+.+ ++.|...+. +..+.+.+++.. ..++.++-+++....-.. 
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~-~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~   79 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEEL-REEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI   79 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHH-HHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHH-HhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH
Confidence            5789999999999999999666999999999887777 456665443 334455555543 389999988887642222 


Q ss_pred             --HHhccccCCEEEEe
Q 027668          123 --LIGLLKSQGKLVLL  136 (220)
Q Consensus       123 --~~~~l~~~g~iv~~  136 (220)
                        ..+.+.+..+++..
T Consensus        80 ~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   80 ALLARELNPDIRIIAR   95 (116)
T ss_dssp             HHHHHHHTTTSEEEEE
T ss_pred             HHHHHHHCCCCeEEEE
Confidence              23334455566543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0039  Score=48.16  Aligned_cols=74  Identities=19%  Similarity=0.238  Sum_probs=52.7

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEEEE
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      +++||.|+ |.+|..+++.+...|++|+++.++.+..+.+.+..+...   ..|..+.+.+.+.       .+++|++|.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   82 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS   82 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            57899997 999999999999999999999998877666644444221   2344444433322       247899999


Q ss_pred             cCCCc
Q 027668          113 TVSAV  117 (220)
Q Consensus       113 ~~g~~  117 (220)
                      ++|..
T Consensus        83 ~ag~~   87 (276)
T PRK06482         83 NAGYG   87 (276)
T ss_pred             CCCCC
Confidence            98753

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.19  E-value=0.0029  Score=48.19  Aligned_cols=34  Identities=41%  Similarity=0.638  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      ...+|+|+|+|++|..++..+...|. ++++++.+
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            34789999999999999999999998 77777665

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=97.18  E-value=0.01  Score=44.94  Aligned_cols=76  Identities=22%  Similarity=0.271  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHH---HcCCcEE---ecCCCHHHHHH-------hcCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVE---RLGADSF---LVSRDQDEMQA-------AMGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~---~~g~~~v---~~~~~~~~~~~-------~~~~  106 (220)
                      +++.++|.|+ |.+|..+++.+...|+++++... ...+.+...+   ..+....   .|..+.+.+.+       ..++
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            3678999997 99999999999999998887543 3333222222   2343322   34444433322       2247


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++|.++|..
T Consensus        82 id~li~~ag~~   92 (246)
T PRK12938         82 IDVLVNNAGIT   92 (246)
T ss_pred             CCEEEECCCCC
Confidence            99999999863

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.18  E-value=0.0042  Score=46.63  Aligned_cols=74  Identities=16%  Similarity=0.268  Sum_probs=58.9

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH-HcCCcEE-ecCCCHHHHHHhc-CCccEEEEcCCCcc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE-RLGADSF-LVSRDQDEMQAAM-GTMDGIIDTVSAVH  118 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~-~~g~~~v-~~~~~~~~~~~~~-~~~d~vid~~g~~~  118 (220)
                      .++|+|+|.+|..+++.+...|..|+++++++++..+... +++...+ .+..+.+.++++. ..+|.++=++|...
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~   78 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE   78 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence            5789999999999999999999999999999998777433 4565444 3555667776663 48999999999864

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.18  E-value=0.0063  Score=48.19  Aligned_cols=118  Identities=18%  Similarity=0.267  Sum_probs=74.1

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc-c--
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH-P--  119 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-~--  119 (220)
                      |+++-|+|.|.+|+.+++.++.+|.+|++.++...+. .. ...+...   .   +.+.++....|++...+.-.+ +  
T Consensus       142 gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~-~~~~~~~---~---~~Ld~lL~~sDiv~lh~PlT~eT~g  213 (324)
T COG0111         142 GKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RA-GVDGVVG---V---DSLDELLAEADILTLHLPLTPETRG  213 (324)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hh-cccccee---c---ccHHHHHhhCCEEEEcCCCCcchhc
Confidence            7899999999999999999999999999999943321 11 1112111   1   224444456788887665432 1  


Q ss_pred             -H-HHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCccee-EEEEecccH
Q 027668          120 -L-MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRAD-IEVIPADYV  192 (220)
Q Consensus       120 -~-~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~i  192 (220)
                       + ...+..|+++..++.++...-                        -+-..+++.+++|.+.-. +++|+-|-.
T Consensus       214 ~i~~~~~a~MK~gailIN~aRG~v------------------------Vde~aL~~AL~~G~i~gA~lDVf~~EPl  265 (324)
T COG0111         214 LINAEELAKMKPGAILINAARGGV------------------------VDEDALLAALDSGKIAGAALDVFEEEPL  265 (324)
T ss_pred             ccCHHHHhhCCCCeEEEECCCcce------------------------ecHHHHHHHHHcCCcceEEecCCCCCCC
Confidence             1 345667888887777654321                        134566677777776633 355544433

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0033  Score=48.01  Aligned_cols=75  Identities=21%  Similarity=0.281  Sum_probs=53.4

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC---CcE-EecCCCHHHHHHhc-------CCccEE
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---ADS-FLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g---~~~-v~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      +++++|.|+ |.+|..++..+...|++|++++++.++.+.+.+.+.   ... ..|..+.+.+....       +++|++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL   81 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            468999997 999999999988899999999998877666655442   221 23444544443221       369999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      |.+.|..
T Consensus        82 i~~ag~~   88 (257)
T PRK07074         82 VANAGAA   88 (257)
T ss_pred             EECCCCC
Confidence            9999753

>PRK12743 oxidoreductase; Provisional

Probab=97.18  E-value=0.014  Score=44.51  Aligned_cols=74  Identities=18%  Similarity=0.245  Sum_probs=48.4

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHH---HHcCCcE-E--ecCCCHHHHHH-------hcCCc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAV---ERLGADS-F--LVSRDQDEMQA-------AMGTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~---~~~g~~~-v--~~~~~~~~~~~-------~~~~~  107 (220)
                      ++++||.|+ |.+|+.+++.+...|++|+++.+.+. +.+.+.   +..|... .  .|-.+.+.++.       ..+.+
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI   81 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999997 89999999999999999988765433 332222   2344321 1  34444443322       22478


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        82 d~li~~ag~   90 (256)
T PRK12743         82 DVLVNNAGA   90 (256)
T ss_pred             CEEEECCCC
Confidence            999999875

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=97.18  E-value=0.003  Score=48.51  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |.+|..++..+...|++|+++.+++++.+.+...+   |...   ..|-.+.+.+.++       .+.+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI   88 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            5688999997 99999999988899999999998877655543333   4321   2344454443332       2468


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |.+|.++|.
T Consensus        89 d~li~~ag~   97 (265)
T PRK07097         89 DILVNNAGI   97 (265)
T ss_pred             CEEEECCCC
Confidence            999999886

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=97.18  E-value=0.0089  Score=41.81  Aligned_cols=97  Identities=20%  Similarity=0.325  Sum_probs=58.5

Q ss_pred             EEEEEcCchHHHHHHHHHHH-CCCeEEEEeCC--cccHHHHHH---HcCC---cE-------Ee--------cCCCHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKA-MGVKVTVISTS--PSKKSEAVE---RLGA---DS-------FL--------VSRDQDEM  100 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~-~g~~v~~~~~~--~~~~~~~~~---~~g~---~~-------v~--------~~~~~~~~  100 (220)
                      +|.|+|.|.+|..+++.+.. .+.+++++...  .+....+.+   ..|.   +.       ++        ...++..+
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~p~~~   81 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPANL   81 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCChHHC
Confidence            57899999999999988775 45677766552  222222222   1121   10       11        11122233


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      .+-.-++|+|+||+|.-.....+...++.|.+-|+++.+..
T Consensus        82 ~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~  122 (149)
T smart00846       82 PWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAK  122 (149)
T ss_pred             cccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCC
Confidence            22223899999999886555667788888878888877643

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.18  E-value=0.0035  Score=49.54  Aligned_cols=85  Identities=20%  Similarity=0.273  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~--  119 (220)
                      .|+++.|+|.|.+|..++++++.+|++|+..++....      .....    .   ..+.++....|+|+-+....+.  
T Consensus       146 ~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~------~~~~~----~---~~l~ell~~sDiv~l~~Plt~~T~  212 (314)
T PRK06932        146 RGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS------VCREG----Y---TPFEEVLKQADIVTLHCPLTETTQ  212 (314)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc------ccccc----c---CCHHHHHHhCCEEEEcCCCChHHh
Confidence            4689999999999999999999999999988754321      11111    1   1244445578999887764321  


Q ss_pred             --H-HHHHhccccCCEEEEecCC
Q 027668          120 --L-MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       120 --~-~~~~~~l~~~g~iv~~g~~  139 (220)
                        + ...+..|+++..++.++..
T Consensus       213 ~li~~~~l~~mk~ga~lIN~aRG  235 (314)
T PRK06932        213 NLINAETLALMKPTAFLINTGRG  235 (314)
T ss_pred             cccCHHHHHhCCCCeEEEECCCc
Confidence              2 3577889999999988753

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.18  E-value=0.0087  Score=46.28  Aligned_cols=95  Identities=16%  Similarity=0.182  Sum_probs=69.3

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcCc-hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+..+....|+...---.|++|+|+|.| .+|.-++.++...|+.|++.......                     +
T Consensus       136 ~~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~---------------------l  194 (285)
T PRK14191        136 FVPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKD---------------------L  194 (285)
T ss_pred             CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHH---------------------H
Confidence            4566766666666655422479999999975 99999999999999998876433211                     2


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      .+....+|+|+-++|.+..+.  -+.+++|..++.+|..
T Consensus       195 ~~~~~~ADIvV~AvG~p~~i~--~~~vk~GavVIDvGi~  231 (285)
T PRK14191        195 SFYTQNADIVCVGVGKPDLIK--ASMVKKGAVVVDIGIN  231 (285)
T ss_pred             HHHHHhCCEEEEecCCCCcCC--HHHcCCCcEEEEeecc
Confidence            233457899999999987543  3456899999998864

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.18  E-value=0.0029  Score=47.97  Aligned_cols=76  Identities=22%  Similarity=0.333  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCcE-E--ecCCCHHHHHHhc-------CCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADS-F--LVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~~-v--~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++...+.+   ..+... +  .|-.+.+.+.+..       +.+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   84 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL   84 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4678999997 999999999999999999999998654443322   223211 1  2444444333322       378


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |.+|.++|..
T Consensus        85 d~vi~~ag~~   94 (251)
T PRK12826         85 DILVANAGIF   94 (251)
T ss_pred             CEEEECCCCC
Confidence            9999998663

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.17  E-value=0.0034  Score=50.04  Aligned_cols=94  Identities=19%  Similarity=0.302  Sum_probs=62.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHH-CCC-eEEEEeCCcccHHHHHHHc----CCcEEecCCCHHHHHHhcCCccEEEEcC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVERL----GADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~-~g~-~v~~~~~~~~~~~~~~~~~----g~~~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      +...+++|+|+|..|.+.+..+.. .+. +|.+..++.++.+.+.+++    |.. +....+   ..+...+.|+|+.|+
T Consensus       130 ~~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~-v~~~~d---~~~al~~aDiVi~aT  205 (330)
T PRK08291        130 EDASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIP-VTVARD---VHEAVAGADIIVTTT  205 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCce-EEEeCC---HHHHHccCCEEEEee
Confidence            344689999999999887776664 565 8999999988887776654    333 211222   233335789999998


Q ss_pred             CCcccHHHHHhccccCCEEEEecCC
Q 027668          115 SAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       115 g~~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      +....+-.. ..++++-.+..+|..
T Consensus       206 ~s~~p~i~~-~~l~~g~~v~~vg~d  229 (330)
T PRK08291        206 PSEEPILKA-EWLHPGLHVTAMGSD  229 (330)
T ss_pred             CCCCcEecH-HHcCCCceEEeeCCC
Confidence            765432211 236777778777764

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0035  Score=47.35  Aligned_cols=76  Identities=12%  Similarity=0.210  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc--E-EecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD--S-FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~--~-v~~~~~~~~~~~~-------~~~  106 (220)
                      ..+++++|.|+ |.+|+.+++.+...|++|+++++++++.+++.+.   .+..  . ..|-.+.+.+...       .++
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            34578999997 9999999999999999999999987765554332   2221  1 2244444433222       246


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        84 id~lv~~ag~   93 (241)
T PRK07454         84 PDVLINNAGM   93 (241)
T ss_pred             CCEEEECCCc
Confidence            9999999985

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.17  E-value=0.0026  Score=55.04  Aligned_cols=92  Identities=17%  Similarity=0.321  Sum_probs=66.8

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEEcCCCcccH
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVHPL  120 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~~  120 (220)
                      .++|+|+|.|.+|+.+++.++..|.++++++.++++.+.+ +++|...++ |..+.+..++.. +.+|.++-++++.+.-
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~-~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n  478 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETL-RKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTS  478 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHH-HhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHH
Confidence            3689999999999999999999999999999999988777 667876444 444556555443 3899999999886533


Q ss_pred             HHH---HhccccCCEEEE
Q 027668          121 MPL---IGLLKSQGKLVL  135 (220)
Q Consensus       121 ~~~---~~~l~~~g~iv~  135 (220)
                      ...   .+.+.|.-+++.
T Consensus       479 ~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        479 LQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             HHHHHHHHHhCCCCeEEE
Confidence            233   233344544443

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.16  E-value=0.0031  Score=51.18  Aligned_cols=77  Identities=23%  Similarity=0.361  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC-------------------cccHHHHHHHc---CC-cEEecC---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS-------------------PSKKSEAVERL---GA-DSFLVS---   94 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~-------------------~~~~~~~~~~~---g~-~~v~~~---   94 (220)
                      .+.+|+|+|+|++|..++..+...|. ++++++.+                   ..|.+.+.+.+   .. ..+...   
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~  213 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER  213 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence            55789999999999999999999999 78888876                   22323222222   21 111111   


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCcc
Q 027668           95 RDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        95 ~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      -+.+...++..++|+||||+.+..
T Consensus       214 ~~~~~~~~~~~~~D~Vv~~~d~~~  237 (376)
T PRK08762        214 VTSDNVEALLQDVDVVVDGADNFP  237 (376)
T ss_pred             CChHHHHHHHhCCCEEEECCCCHH
Confidence            122344445568999999999864

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.16  E-value=0.0072  Score=48.72  Aligned_cols=59  Identities=25%  Similarity=0.314  Sum_probs=45.1

Q ss_pred             ccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           18 DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        18 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .+|-+....+.+- .++.....--.|.+|.|.|.|.+|+.+++.+...|++|++++.+..
T Consensus       183 ~~aTg~Gv~~~~~-~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         183 SEATGYGVFYAIR-EALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             CcccceehHHHHH-HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            4444455554443 5555554224899999999999999999999999999999999877

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.15  E-value=0.0056  Score=51.27  Aligned_cols=86  Identities=16%  Similarity=0.293  Sum_probs=58.9

Q ss_pred             hhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCC
Q 027668           27 GITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGT  106 (220)
Q Consensus        27 ~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~  106 (220)
                      +.....++++...-..+.+++|+|+|++|.+++..+...|++++++.++.++.+.+.+.++... +...   .... ...
T Consensus       316 ~~G~~~~l~~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~-~~~~---~~~~-l~~  390 (477)
T PRK09310        316 GEGLFSLLKQKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKA-FPLE---SLPE-LHR  390 (477)
T ss_pred             HHHHHHHHHhcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccce-echh---Hhcc-cCC
Confidence            3334445544332245789999999999999999999999999999988877777666554321 2111   1111 247


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|+||+|++..
T Consensus       391 ~DiVInatP~g  401 (477)
T PRK09310        391 IDIIINCLPPS  401 (477)
T ss_pred             CCEEEEcCCCC
Confidence            89999998765

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.15  E-value=0.0041  Score=46.40  Aligned_cols=93  Identities=29%  Similarity=0.354  Sum_probs=59.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHH---HHcCCcEEecCCCH--HHHHHhcCCccEEEE----
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGADSFLVSRDQ--DEMQAAMGTMDGIID----  112 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~---~~~g~~~v~~~~~~--~~~~~~~~~~d~vid----  112 (220)
                      +|.+||=+|||+ |++..-+| ..|+.|+.++-+++..+.+.   .+-|..  +++...  +.+....+.||+|+.    
T Consensus        59 ~g~~vLDvGCGg-G~Lse~mA-r~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVl  134 (243)
T COG2227          59 PGLRVLDVGCGG-GILSEPLA-RLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVL  134 (243)
T ss_pred             CCCeEEEecCCc-cHhhHHHH-HCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHH
Confidence            889999999864 55555444 47899999999988766653   122323  334432  222222248999974    


Q ss_pred             -cCCCcc-cHHHHHhccccCCEEEEecC
Q 027668          113 -TVSAVH-PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 -~~g~~~-~~~~~~~~l~~~g~iv~~g~  138 (220)
                       -+..+. .+..+.++++|+|.+.....
T Consensus       135 EHv~dp~~~~~~c~~lvkP~G~lf~STi  162 (243)
T COG2227         135 EHVPDPESFLRACAKLVKPGGILFLSTI  162 (243)
T ss_pred             HccCCHHHHHHHHHHHcCCCcEEEEecc
Confidence             233332 35568889999999877543

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0025  Score=48.50  Aligned_cols=75  Identities=21%  Similarity=0.266  Sum_probs=52.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |.+|..+++.+...|++|+++++++++.+.+.+   +.+...   ..|..+.+.+.+.       .+.+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   85 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL   85 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            4689999997 999999999999999999999998765544433   233221   1244444333222       2478


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        86 d~li~~ag~   94 (253)
T PRK06172         86 DYAFNNAGI   94 (253)
T ss_pred             CEEEECCCC
Confidence            999999875

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=97.14  E-value=0.0033  Score=47.96  Aligned_cols=76  Identities=25%  Similarity=0.333  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCC--cE-EecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGA--DS-FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~--~~-v~~~~~~~~~~~~-------~~~  106 (220)
                      -++++++|.|+ |.+|..+++.+...|++|+++++++++.+.+.+   +.+.  .. ..|..+.+.+.+.       .+.
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            35789999997 999999999888899999999998765544433   2342  21 2244444433222       236


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|.+|.++|.
T Consensus        89 id~vi~~ag~   98 (256)
T PRK06124         89 LDILVNNVGA   98 (256)
T ss_pred             CCEEEECCCC
Confidence            8999999885

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=97.14  E-value=0.0051  Score=49.37  Aligned_cols=87  Identities=14%  Similarity=0.061  Sum_probs=57.2

Q ss_pred             hhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHH----HHHHcC------CcEEe-cCCC
Q 027668           29 TVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSE----AVERLG------ADSFL-VSRD   96 (220)
Q Consensus        29 ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~----~~~~~g------~~~v~-~~~~   96 (220)
                      |||.-++..-. -..++|||.|+ |-+|..++..+...|.+|+++++.......    .....+      ...+. |-.+
T Consensus         2 ~~~~~~~~~~~-~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (348)
T PRK15181          2 TAYEELRTKLV-LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRK   80 (348)
T ss_pred             chhhhhhhccc-ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCC
Confidence            56776654443 34578999997 999999999999999999999876432111    111111      11222 4444


Q ss_pred             HHHHHHhcCCccEEEEcCCC
Q 027668           97 QDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        97 ~~~~~~~~~~~d~vid~~g~  116 (220)
                      .+.+.+...++|+||.+++.
T Consensus        81 ~~~l~~~~~~~d~ViHlAa~  100 (348)
T PRK15181         81 FTDCQKACKNVDYVLHQAAL  100 (348)
T ss_pred             HHHHHHHhhCCCEEEECccc
Confidence            55555555689999998864

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=97.14  E-value=0.0035  Score=48.46  Aligned_cols=75  Identities=23%  Similarity=0.341  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      ++++++|.|+ |.+|+.+++.+...|++|++++++.++.+.+.+++   +...   ..|..+.+.+...       .+++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   88 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPC   88 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5688999997 99999999999999999999999876655544332   3221   1234444333222       2479


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        89 d~li~~ag~   97 (278)
T PRK08277         89 DILINGAGG   97 (278)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0033  Score=48.04  Aligned_cols=76  Identities=18%  Similarity=0.274  Sum_probs=52.5

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCe-EEEEeCCcccHHHHHH---HcCCc---EEecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVK-VTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-------~~  105 (220)
                      ..+++++|.|+ |.+|..+++.+...|++ |++++++.++......   ..+..   ...|..+.+.+.+.       .+
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG   83 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            35688999997 99999999999999997 9999888665443322   23432   12344554443332       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|.+|.+.|.
T Consensus        84 ~id~li~~ag~   94 (260)
T PRK06198         84 RLDALVNAAGL   94 (260)
T ss_pred             CCCEEEECCCc
Confidence            79999999985

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0036  Score=47.46  Aligned_cols=74  Identities=20%  Similarity=0.304  Sum_probs=51.1

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-----CCc-E--EecCCCHHHHHH-------hcCC
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GAD-S--FLVSRDQDEMQA-------AMGT  106 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-----g~~-~--v~~~~~~~~~~~-------~~~~  106 (220)
                      +++++|.|+ |.+|..+++.+...|++|+++++++++.+.+...+     +.. .  ..|..+.+.+.+       ..++
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            467999997 99999999988889999999999887655543322     211 1  124444443322       2247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        82 id~vi~~ag~   91 (248)
T PRK08251         82 LDRVIVNAGI   91 (248)
T ss_pred             CCEEEECCCc
Confidence            9999999874

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.13  E-value=0.0048  Score=49.12  Aligned_cols=86  Identities=22%  Similarity=0.291  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~--  119 (220)
                      .|.+|.|+|.|.+|..+++.++..|.+|++.+++.......     ..    ..  ....+.....|+|+.++.....  
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----~~----~~--~~l~ell~~aDiVil~lP~t~~t~  213 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----LT----YK--DSVKEAIKDADIISLHVPANKESY  213 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----hh----cc--CCHHHHHhcCCEEEEeCCCcHHHH
Confidence            56789999999999999999999999999999876432211     01    10  1233444578999988876531  


Q ss_pred             ---HHHHHhccccCCEEEEecC
Q 027668          120 ---LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ---~~~~~~~l~~~g~iv~~g~  138 (220)
                         ....+..++++..+|.++.
T Consensus       214 ~li~~~~l~~mk~gavlIN~aR  235 (330)
T PRK12480        214 HLFDKAMFDHVKKGAILVNAAR  235 (330)
T ss_pred             HHHhHHHHhcCCCCcEEEEcCC
Confidence               1235567788888877764

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.13  E-value=0.0037  Score=47.77  Aligned_cols=74  Identities=16%  Similarity=0.235  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHH---HHcCCc---EEecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~---~~~g~~---~v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++.++ ++.+.+.   .+.+..   ...|-.+.+.+.+.       .+++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   92 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKI   92 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 999999999999999999999887 3333332   233422   12344444433322       2478


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        93 d~li~~ag~  101 (258)
T PRK06935         93 DILVNNAGT  101 (258)
T ss_pred             CEEEECCCC
Confidence            999999875

>PRK10637 cysG siroheme synthase; Provisional

Probab=97.13  E-value=0.022  Score=47.48  Aligned_cols=117  Identities=10%  Similarity=-0.006  Sum_probs=73.2

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      -.|.+|||+|+|.++.-=++.+...|++|+++...-. ....+. ..|.-..+. ++.  ......++++||-|++....
T Consensus        10 l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~-~~~~i~~~~-~~~--~~~dl~~~~lv~~at~d~~~   85 (457)
T PRK10637         10 LRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWA-DAGMLTLVE-GPF--DESLLDTCWLAIAATDDDAV   85 (457)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHH-hCCCEEEEe-CCC--ChHHhCCCEEEEECCCCHHH
Confidence            3578999999999998888888889999988875432 233332 223222222 111  11223589999999999864


Q ss_pred             HHHHHhccccCCEEEEecCCCCCcccCccccc-cCCcEEEEee
Q 027668          120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL-TGEKIVGGSL  161 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~-~~~~~i~~~~  161 (220)
                      -.......+..|.++.........+|-.+..+ .+.+++.-+.
T Consensus        86 n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT  128 (457)
T PRK10637         86 NQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSS  128 (457)
T ss_pred             hHHHHHHHHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEEC
Confidence            44555556677888887665544454444433 3456665443

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.13  E-value=0.0075  Score=50.63  Aligned_cols=72  Identities=25%  Similarity=0.277  Sum_probs=50.8

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCccc----HHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK----KSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      ..+++|+|+|+|.+|+.++..++..|.+|++++..+..    .....++.|......... .    ...++|.||-+.|.
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~----~~~~~D~Vv~s~Gi   88 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-T----LPEDTDLVVTSPGW   88 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-c----ccCCCCEEEECCCc
Confidence            35679999999999999999999999999998866431    112235567664433221 1    22368999988887


Q ss_pred             c
Q 027668          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      +
T Consensus        89 ~   89 (480)
T PRK01438         89 R   89 (480)
T ss_pred             C
Confidence            5

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.12  E-value=0.0093  Score=39.85  Aligned_cols=87  Identities=21%  Similarity=0.316  Sum_probs=58.6

Q ss_pred             EEEEEcCchHHHHHHHHHHHC--CCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAM--GVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~--g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  121 (220)
                      ++.|+|+|..|..-..-++..  +.+++ ++++++++.+.+.+++|.. .+.  +.+.+-+. ..+|+|+-++.......
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~--~~~~ll~~-~~~D~V~I~tp~~~h~~   77 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIP-VYT--DLEELLAD-EDVDAVIIATPPSSHAE   77 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSE-EES--SHHHHHHH-TTESEEEEESSGGGHHH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhccc-chh--HHHHHHHh-hcCCEEEEecCCcchHH
Confidence            578999999998888766655  44766 4455555666677788887 432  22222211 27999999999886677


Q ss_pred             HHHhccccCCEEEEe
Q 027668          122 PLIGLLKSQGKLVLL  136 (220)
Q Consensus       122 ~~~~~l~~~g~iv~~  136 (220)
                      .+..+++.|- -+++
T Consensus        78 ~~~~~l~~g~-~v~~   91 (120)
T PF01408_consen   78 IAKKALEAGK-HVLV   91 (120)
T ss_dssp             HHHHHHHTTS-EEEE
T ss_pred             HHHHHHHcCC-EEEE
Confidence            7777777665 4444

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.12  E-value=0.0033  Score=43.64  Aligned_cols=31  Identities=42%  Similarity=0.549  Sum_probs=27.3

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      +|+|+|+|++|..++..+...|. ++++++.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            47899999999999999999999 78877765

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=97.12  E-value=0.0088  Score=48.16  Aligned_cols=93  Identities=13%  Similarity=0.328  Sum_probs=64.7

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHC--CCeEEEEe--CCcccHHHHHHHcCCcEEecCCCH--HHHHH--------------
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAM--GVKVTVIS--TSPSKKSEAVERLGADSFLVSRDQ--DEMQA--------------  102 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~--g~~v~~~~--~~~~~~~~~~~~~g~~~v~~~~~~--~~~~~--------------  102 (220)
                      ++|.|+|+ |++|..++...+..  .++|++.+  ++.+++.+.+++|+...+.-.++.  ..+++              
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~   81 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGEE   81 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEEChh
Confidence            47899996 99999999988765  45777775  445567777788998766543321  12221              


Q ss_pred             ----hcC--CccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668          103 ----AMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       103 ----~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                          +..  .+|+|+.+.++...+.-.+..++.|-++.+.
T Consensus        82 ~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLA  121 (385)
T PRK05447         82 GLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALA  121 (385)
T ss_pred             HHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEe
Confidence                111  5899999987765677788888877776663

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.12  E-value=0.0062  Score=55.18  Aligned_cols=96  Identities=19%  Similarity=0.224  Sum_probs=68.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHC-CCe-------------EEEEeCCcccHHHHHHHc-CCc-EEecCCCHHHHHHhcC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAM-GVK-------------VTVISTSPSKKSEAVERL-GAD-SFLVSRDQDEMQAAMG  105 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~-g~~-------------v~~~~~~~~~~~~~~~~~-g~~-~v~~~~~~~~~~~~~~  105 (220)
                      ..++|+|+|+|.+|...++.+... +++             |.+.+.+.++.+.+.+.+ ++. ..+|..+.+.+.+...
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            456899999999999999988754 334             777777776666666666 443 2345667777776666


Q ss_pred             CccEEEEcCCCcccHHHHHhccccCCEEEEec
Q 027668          106 TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       106 ~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      ++|+|+.|++..-....+..+++.+-.++...
T Consensus       648 ~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek  679 (1042)
T PLN02819        648 QVDVVISLLPASCHAVVAKACIELKKHLVTAS  679 (1042)
T ss_pred             CCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence            79999999998655556666777666665443

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.11  E-value=0.0029  Score=50.20  Aligned_cols=44  Identities=18%  Similarity=0.287  Sum_probs=38.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER   85 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~   85 (220)
                      .|++++|.|+ |++|.++++.+...|++|+++++++++.+.+.++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~   96 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDS   96 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH
Confidence            4789999997 8999999998888999999999998877665443

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=97.11  E-value=0.0055  Score=49.23  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=54.0

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc--C--CcEE-ecCCCHHHHHHhcCCccEEEEcC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--G--ADSF-LVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~--g--~~~v-~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      ..+.+|||.|+ |.+|..+++.+...|.+|++++++.++.+.+...+  +  ...+ .|-.+.+.+.+...++|.||.++
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   87 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA   87 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence            45678999996 99999999999999999999888765544433332  1  1211 23344556666666899999988


Q ss_pred             CC
Q 027668          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      +.
T Consensus        88 ~~   89 (353)
T PLN02896         88 AS   89 (353)
T ss_pred             cc
Confidence            64

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.10  E-value=0.0056  Score=47.33  Aligned_cols=88  Identities=17%  Similarity=0.260  Sum_probs=58.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHH--CCCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKA--MGVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~--~g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -+|.|+|.|.+|...++.+..  .+.++. +.++++++.+.+.+++|....+  .+.+   ++...+|+|+.|++.....
T Consensus         7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~--~~~e---ell~~~D~Vvi~tp~~~h~   81 (271)
T PRK13302          7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPV--VPLD---QLATHADIVVEAAPASVLR   81 (271)
T ss_pred             eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCccc--CCHH---HHhcCCCEEEECCCcHHHH
Confidence            578999999999988887765  367776 4455555655666666743232  2222   2334689999999987555


Q ss_pred             HHHHhccccCCEEEEe
Q 027668          121 MPLIGLLKSQGKLVLL  136 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~  136 (220)
                      +.....++.|..++..
T Consensus        82 e~~~~aL~aGk~Vi~~   97 (271)
T PRK13302         82 AIVEPVLAAGKKAIVL   97 (271)
T ss_pred             HHHHHHHHcCCcEEEe
Confidence            5566777776656543

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.10  E-value=0.0055  Score=46.48  Aligned_cols=75  Identities=21%  Similarity=0.264  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHHHcCCc---EEecCCCHHHHHH-------hcCCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGAD---SFLVSRDQDEMQA-------AMGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~g~~---~v~~~~~~~~~~~-------~~~~~d~  109 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++. +.....++.+..   ...|..+.+.+.+       ..+++|+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   83 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHIDI   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            4789999997 99999999999999999999988652 112222344432   1224444443332       1247999


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|.++|.
T Consensus        84 li~~ag~   90 (248)
T TIGR01832        84 LVNNAGI   90 (248)
T ss_pred             EEECCCC
Confidence            9999876

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK14967 putative methyltransferase; Provisional

Probab=97.08  E-value=0.0077  Score=45.18  Aligned_cols=92  Identities=26%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH---HcCCcE-EecCCCHHHHHHhc-CCccEEEEc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE---RLGADS-FLVSRDQDEMQAAM-GTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~---~~g~~~-v~~~~~~~~~~~~~-~~~d~vid~  113 (220)
                      ++++++||-.|+|. |..++.+++. |. +++.++.++...+.+.+   ..+... +++.+-.+   ... +.||+|+..
T Consensus        34 ~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~Vi~n  108 (223)
T PRK14967         34 LGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVVVSN  108 (223)
T ss_pred             cCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEEEEC
Confidence            67889999999987 8888888775 66 99999999876554432   233322 22222111   122 379999965


Q ss_pred             CCCcc---------------------------cHHHHHhccccCCEEEEe
Q 027668          114 VSAVH---------------------------PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       114 ~g~~~---------------------------~~~~~~~~l~~~g~iv~~  136 (220)
                      .+...                           .+..+.+.|+++|+++++
T Consensus       109 pPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~  158 (223)
T PRK14967        109 PPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLV  158 (223)
T ss_pred             CCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            32110                           134567889999998865

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=97.08  E-value=0.0057  Score=48.44  Aligned_cols=95  Identities=16%  Similarity=0.211  Sum_probs=60.9

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC----CeEEEEeCCccc--HHHHHHHcCC--------------cE--------EecCCC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG----VKVTVISTSPSK--KSEAVERLGA--------------DS--------FLVSRD   96 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g----~~v~~~~~~~~~--~~~~~~~~g~--------------~~--------v~~~~~   96 (220)
                      +|.|+|.|.+|..+.+.+...+    .++..+..-.+.  ...+. +++.              ..        ++..++
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll-~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELADQASMAHLL-RYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHH-hhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            3779999999999999988764    566666542221  11121 2221              01        111122


Q ss_pred             HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668           97 QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        97 ~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++.+.+...++|+||+|+|.......+...++.|++.|.++.+.
T Consensus        80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~  123 (325)
T TIGR01532        80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPG  123 (325)
T ss_pred             hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCC
Confidence            23332222389999999999877778888999998999888763

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>PRK08703 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0056  Score=46.19  Aligned_cols=43  Identities=23%  Similarity=0.319  Sum_probs=36.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE   84 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~   84 (220)
                      ++++++|.|+ |.+|..+++.+...|++|+++++++++.+.+.+
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~   48 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYD   48 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHH
Confidence            4678999997 999999999999999999999999876655433

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.07  E-value=0.006  Score=45.93  Aligned_cols=97  Identities=23%  Similarity=0.281  Sum_probs=66.0

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc---CCcEEecCCCHHHHHHhc--CCccEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL---GADSFLVSRDQDEMQAAM--GTMDGII  111 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~--~~~d~vi  111 (220)
                      .+.||++|+=.|.|+ |-+++-+++..|.  +|+.....++..+.+.+++   |....+.....| +.+..  +.+|.+|
T Consensus        91 gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D-v~~~~~~~~vDav~  168 (256)
T COG2519          91 GISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD-VREGIDEEDVDAVF  168 (256)
T ss_pred             CCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecc-ccccccccccCEEE
Confidence            479999999888775 8888889988876  8999999988766665544   322111111111 11111  2799987


Q ss_pred             EcCCC-cccHHHHHhccccCCEEEEec
Q 027668          112 DTVSA-VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       112 d~~g~-~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      --... ...++.+.+.|++||.++.+.
T Consensus       169 LDmp~PW~~le~~~~~Lkpgg~~~~y~  195 (256)
T COG2519         169 LDLPDPWNVLEHVSDALKPGGVVVVYS  195 (256)
T ss_pred             EcCCChHHHHHHHHHHhCCCcEEEEEc
Confidence            54444 456788999999999998874

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=97.06  E-value=0.0042  Score=47.39  Aligned_cols=75  Identities=19%  Similarity=0.315  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .+++++|.|+ |.+|..+++.+...|+++++++++.++.+.+..+   .+...   ..|..+.+.+.+.       .+++
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~   89 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV   89 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999997 9999999999999999999999887765544332   23221   2344454443322       2478


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        90 d~li~~ag~   98 (255)
T PRK06113         90 DILVNNAGG   98 (255)
T ss_pred             CEEEECCCC
Confidence            999999875

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.05  E-value=0.011  Score=45.57  Aligned_cols=96  Identities=16%  Similarity=0.234  Sum_probs=69.9

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+....+..++...---.|++|+|+|- ..+|.-++.+++..|+.|++..+...                     .+
T Consensus       131 ~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L  189 (279)
T PRK14178        131 FAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NL  189 (279)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HH
Confidence            456666666666666543357899999996 59999999999999998888765432                     13


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+....+|++|.++|.+..+...+  +++|..++.+|...
T Consensus       190 ~~~~~~ADIvI~Avgk~~lv~~~~--vk~GavVIDVgi~~  227 (279)
T PRK14178        190 KAELRQADILVSAAGKAGFITPDM--VKPGATVIDVGINQ  227 (279)
T ss_pred             HHHHhhCCEEEECCCcccccCHHH--cCCCcEEEEeeccc
Confidence            333457899999999775544333  79999999998753

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.05  E-value=0.0096  Score=46.05  Aligned_cols=96  Identities=15%  Similarity=0.230  Sum_probs=70.0

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+..+....|+...---.|++|+|+|. |.+|.-++.++...|+.|++......                     ..
T Consensus       137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~---------------------~l  195 (284)
T PRK14179        137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR---------------------NL  195 (284)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC---------------------CH
Confidence            456666666666665543357999999996 99999999999999999987632211                     12


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++.....|+||-++|.+..+...|  +++|..++.+|...
T Consensus       196 ~~~~~~ADIVI~avg~~~~v~~~~--ik~GavVIDvgin~  233 (284)
T PRK14179        196 AEVARKADILVVAIGRGHFVTKEF--VKEGAVVIDVGMNR  233 (284)
T ss_pred             HHHHhhCCEEEEecCccccCCHHH--ccCCcEEEEeccee
Confidence            233446899999999987665544  88998888888643

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=97.05  E-value=0.015  Score=44.50  Aligned_cols=76  Identities=18%  Similarity=0.202  Sum_probs=50.1

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHH---HHcCCc---EEecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAV---ERLGAD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~---~~~g~~---~v~~~~~~~~~~~~-------~~  105 (220)
                      -++++++|.|+ |.+|..+++.+...|++++++.++++ ..+.+.   +..+..   ...|-.+.+.+.++       .+
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g   84 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFG   84 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            35789999997 99999999999999999888877543 222222   222322   12344554443322       23


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|+++.++|.
T Consensus        85 ~id~lv~~ag~   95 (261)
T PRK08936         85 TLDVMINNAGI   95 (261)
T ss_pred             CCCEEEECCCC
Confidence            78999999885

>PRK08317 hypothetical protein; Provisional

Probab=97.04  E-value=0.0051  Score=46.31  Aligned_cols=100  Identities=27%  Similarity=0.351  Sum_probs=63.0

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHHc---CCcEEecCCCHHHHHHhcCCccEEEE
Q 027668           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERL---GADSFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      ..+.++++||.+|+|. |..+..+++..+  .+++.++.++...+.+.+..   +....+...+........+.||.|+-
T Consensus        15 ~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~   93 (241)
T PRK08317         15 LAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRS   93 (241)
T ss_pred             cCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEE
Confidence            3468899999999976 888888888774  58999999887665553331   11111111111111111237898875


Q ss_pred             cCCC------cccHHHHHhccccCCEEEEecC
Q 027668          113 TVSA------VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~g~------~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ....      ...+..+.+.|+++|.++....
T Consensus        94 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  125 (241)
T PRK08317         94 DRVLQHLEDPARALAEIARVLRPGGRVVVLDT  125 (241)
T ss_pred             echhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence            4221      1246678889999999988764

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0037  Score=48.13  Aligned_cols=72  Identities=22%  Similarity=0.312  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .+++++|.|+ |.+|..+++.+...|++|++++++.++.+..   .+... ..|..+.+.+++.       .+.+|++|.
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~   79 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI---PGVELLELDVTDDASVQAAVDEVIARAGRIDVLVN   79 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc---CCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            3568999997 9999999999999999999999886543221   23322 2355555444332       247899999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        80 ~ag~   83 (270)
T PRK06179         80 NAGV   83 (270)
T ss_pred             CCCC
Confidence            9986

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.03  E-value=0.0046  Score=49.24  Aligned_cols=91  Identities=21%  Similarity=0.233  Sum_probs=63.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-------CCc---EEecCCCHHHHHHhcCCccEEEEc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-------GAD---SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-------g~~---~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      -+|.|+|+|.+|...+..+...|.+|.++++++++.+.+.+.-       |..   .+....+   ..+.....|+||-|
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~---~~e~~~~aD~Vi~~   81 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTAD---PEEALAGADFAVVA   81 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCC---HHHHHcCCCEEEEE
Confidence            3689999999999999999999999999999877666654321       210   0111111   22233578999999


Q ss_pred             CCCcccHHHHHhccccCCEEEEecC
Q 027668          114 VSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 ~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      +.... +...++.++++-.++.+..
T Consensus        82 v~~~~-~~~v~~~l~~~~~vi~~~~  105 (328)
T PRK14618         82 VPSKA-LRETLAGLPRALGYVSCAK  105 (328)
T ss_pred             CchHH-HHHHHHhcCcCCEEEEEee
Confidence            98884 6777788887766665533

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.03  E-value=0.0059  Score=48.44  Aligned_cols=88  Identities=19%  Similarity=0.263  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHH-HCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--  118 (220)
                      .|+++.|+|.|.+|+.+++.++ .+|++|+..++....  .....++...+    +   +.++....|+|.-+....+  
T Consensus       144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~--~~~~~~~~~~~----~---l~ell~~sDvv~lh~plt~~T  214 (323)
T PRK15409        144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK--EAEERFNARYC----D---LDTLLQESDFVCIILPLTDET  214 (323)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch--hhHHhcCcEec----C---HHHHHHhCCEEEEeCCCChHH
Confidence            5689999999999999999998 999999987765322  11134444321    1   3344456788877665432  


Q ss_pred             --cH-HHHHhccccCCEEEEecC
Q 027668          119 --PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 --~~-~~~~~~l~~~g~iv~~g~  138 (220)
                        .+ ...+..|+++..+|.++.
T Consensus       215 ~~li~~~~l~~mk~ga~lIN~aR  237 (323)
T PRK15409        215 HHLFGAEQFAKMKSSAIFINAGR  237 (323)
T ss_pred             hhccCHHHHhcCCCCeEEEECCC
Confidence              11 246777888888877764

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=97.03  E-value=0.0057  Score=48.44  Aligned_cols=75  Identities=21%  Similarity=0.253  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---C----CcEE-ecCCCHHHHHHhcCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G----ADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g----~~~v-~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .|++|||.|+ |.+|..+++.+...|.+|+++.++..+.+.....+   +    ...+ .|..+.+.+.+...++|+||.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            4689999997 99999999999989999998888765433221111   1    1211 233344556666668999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      +++.
T Consensus        84 ~A~~   87 (322)
T PLN02986         84 TASP   87 (322)
T ss_pred             eCCC
Confidence            8874

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.03  E-value=0.0067  Score=47.91  Aligned_cols=85  Identities=28%  Similarity=0.348  Sum_probs=55.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|+++.|+|-|.+|+.++++++.+|++|++.++.....     ..+...       ..+.++....|+|+-++...+   
T Consensus       144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-----~~~~~~-------~~l~ell~~sDvv~lh~Plt~~T~  211 (311)
T PRK08410        144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-----NEEYER-------VSLEELLKTSDIISIHAPLNEKTK  211 (311)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc-----ccCcee-------ecHHHHhhcCCEEEEeCCCCchhh
Confidence            57899999999999999999999999999998753211     111111       123334445677766654321   


Q ss_pred             -cH-HHHHhccccCCEEEEecC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~  138 (220)
                       .+ ...+..|+++..+|.++.
T Consensus       212 ~li~~~~~~~Mk~~a~lIN~aR  233 (311)
T PRK08410        212 NLIAYKELKLLKDGAILINVGR  233 (311)
T ss_pred             cccCHHHHHhCCCCeEEEECCC
Confidence             11 245667777777777654

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.03  E-value=0.0047  Score=47.20  Aligned_cols=74  Identities=18%  Similarity=0.184  Sum_probs=50.6

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH----cC---CcE-EecCCCHHHHHHh-------cCC
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LG---ADS-FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~g---~~~-v~~~~~~~~~~~~-------~~~  106 (220)
                      ++++||.|+ |.+|..+++.+...|++|+.++++.++.+...++    .+   ... ..|-.+.+.+...       .++
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            468999997 9999999999999999999999887655444332    22   111 1244444333322       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|.+|.++|.
T Consensus        82 id~vv~~ag~   91 (259)
T PRK12384         82 VDLLVYNAGI   91 (259)
T ss_pred             CCEEEECCCc
Confidence            8999999875

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.02  E-value=0.016  Score=43.95  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=61.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc-ccHHHH---HHHcCCc-E--EecCCCHHHHHH-------hcCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEA---VERLGAD-S--FLVSRDQDEMQA-------AMGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~-~~~~~~---~~~~g~~-~--v~~~~~~~~~~~-------~~~~  106 (220)
                      .+.++||.|+ |.+|..+++-+...|+++++..++. +.....   .+..+.. .  ..|..+.+.+..       ..++
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            3578999997 9999999999889999987766543 222221   1233322 1  124444433322       1247


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          107 MDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +|.+|.++|...                         ..+.+.+.+++.|+++.++...
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~  143 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVA  143 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchh
Confidence            899999998411                         0223445556778999887754

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=97.02  E-value=0.0055  Score=46.57  Aligned_cols=74  Identities=22%  Similarity=0.290  Sum_probs=51.3

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc--E-EecCCCHHHH-------HHhcCCcc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD--S-FLVSRDQDEM-------QAAMGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~--~-v~~~~~~~~~-------~~~~~~~d  108 (220)
                      ++++||.|+ |.+|..+++.+...|++|++++++.++.+.+...+   +..  . ..|..+.+.+       .+..+++|
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            357999997 99999999999999999999999877655553332   222  1 1244454433       22234789


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      .+|.+++.
T Consensus        81 ~vi~~a~~   88 (255)
T TIGR01963        81 ILVNNAGI   88 (255)
T ss_pred             EEEECCCC
Confidence            99988875

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.02  E-value=0.0066  Score=50.48  Aligned_cols=72  Identities=26%  Similarity=0.344  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc-cHHHH---HHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEA---VERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~---~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .+++|+|+|+|.+|+.++..+...|++|++++..+. ..++.   .++.|..... .+..+   +..+++|+||.+.|..
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~-~~~~~---~~~~~~d~vv~~~g~~   79 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVL-GEYPE---EFLEGVDLVVVSPGVP   79 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEe-CCcch---hHhhcCCEEEECCCCC
Confidence            468899999988999999999999999999988752 22211   1344655322 22222   2335799999998864

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.01  E-value=0.0021  Score=45.40  Aligned_cols=91  Identities=19%  Similarity=0.270  Sum_probs=57.3

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-C----cEEecCC--CHHHHHHhcCCccEEEEcCCCc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-A----DSFLVSR--DQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~----~~v~~~~--~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      +|.|+|+|..|.+++..+...|.+|....++++..+.+.+.-. .    ...+...  -.+.+++...+.|+++-++...
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            5889999999999999999999999999999877666643211 0    0000000  0122334446899999999887


Q ss_pred             ccHHHHHhcccc---CCEEEEe
Q 027668          118 HPLMPLIGLLKS---QGKLVLL  136 (220)
Q Consensus       118 ~~~~~~~~~l~~---~g~iv~~  136 (220)
                       ..+..++.+++   .+..+..
T Consensus        81 -~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   81 -AHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             -GHHHHHHHHTTTSHTT-EEEE
T ss_pred             -HHHHHHHHHhhccCCCCEEEE
Confidence             36666666654   3444443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=97.01  E-value=0.0047  Score=52.35  Aligned_cols=73  Identities=22%  Similarity=0.235  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .+++++|+|+|++|.+++..+...|++|+++.++.++.+.+.++++... +...+.  ........|++++|++-.
T Consensus       378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~-~~~~~~--~~~~~~~~diiINtT~vG  450 (529)
T PLN02520        378 AGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQA-LTLADL--ENFHPEEGMILANTTSVG  450 (529)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCce-eeHhHh--hhhccccCeEEEecccCC
Confidence            4678999999999999999999999999999998888777777775432 222111  111122578999887543

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.0051  Score=47.38  Aligned_cols=73  Identities=22%  Similarity=0.322  Sum_probs=50.3

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHH-------hcCCccEE
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQA-------AMGTMDGI  110 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~-------~~~~~d~v  110 (220)
                      +++|.|+ |.+|..+++.+...|++|++++++.++.+.+.+.+   +...   ..|-.+.+.+.+       ..+++|++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~l   81 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVI   81 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            6899997 99999999999999999999999887655543322   3221   123334333322       22479999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      |.++|..
T Consensus        82 I~~ag~~   88 (270)
T PRK05650         82 VNNAGVA   88 (270)
T ss_pred             EECCCCC
Confidence            9998853

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=97.01  E-value=0.0054  Score=48.48  Aligned_cols=74  Identities=23%  Similarity=0.232  Sum_probs=52.9

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHHcCC-----cE-EecCCCHHHHHHh-------cCCc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGA-----DS-FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~g~-----~~-v~~~~~~~~~~~~-------~~~~  107 (220)
                      +++++|.|+ +++|..+++.+...| ++|++++++.++.+++.++++.     .. ..|-.+.+.++++       .+++
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   82 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL   82 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            568999997 899999999888899 8999999988776666555531     11 1344454433322       2479


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        83 D~lI~nAG~   91 (314)
T TIGR01289        83 DALVCNAAV   91 (314)
T ss_pred             CEEEECCCc
Confidence            999999874

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.01  E-value=0.009  Score=47.31  Aligned_cols=86  Identities=23%  Similarity=0.203  Sum_probs=59.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -.+++|.|+|.|.+|.+.++.++..|.+|++..+...+....+++.|....    +   ..+.....|+|+-++.... .
T Consensus        15 L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~----s---~~eaa~~ADVVvLaVPd~~-~   86 (330)
T PRK05479         15 IKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL----T---VAEAAKWADVIMILLPDEV-Q   86 (330)
T ss_pred             hCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC----C---HHHHHhcCCEEEEcCCHHH-H
Confidence            356889999999999999999999999998877765554444456676421    1   2334457899999998653 3


Q ss_pred             HHH-----HhccccCCEEE
Q 027668          121 MPL-----IGLLKSQGKLV  134 (220)
Q Consensus       121 ~~~-----~~~l~~~g~iv  134 (220)
                      ...     ...++++..++
T Consensus        87 ~~V~~~~I~~~Lk~g~iL~  105 (330)
T PRK05479         87 AEVYEEEIEPNLKEGAALA  105 (330)
T ss_pred             HHHHHHHHHhcCCCCCEEE
Confidence            333     33455555543

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=97.00  E-value=0.0029  Score=48.74  Aligned_cols=104  Identities=16%  Similarity=0.048  Sum_probs=64.6

Q ss_pred             hhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-cEE-ecCCCHHHHHHhc-CCccE
Q 027668           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSF-LVSRDQDEMQAAM-GTMDG  109 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v-~~~~~~~~~~~~~-~~~d~  109 (220)
                      ++... .+.++.+||=+|+|. |..+..+++..|++|+.++.++...+.+.+.+.. ..+ +...+.... .+. +.||+
T Consensus        44 ~l~~l-~l~~~~~VLDiGcG~-G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~-~~~~~~FD~  120 (263)
T PTZ00098         44 ILSDI-ELNENSKVLDIGSGL-GGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKK-DFPENTFDM  120 (263)
T ss_pred             HHHhC-CCCCCCEEEEEcCCC-ChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccC-CCCCCCeEE
Confidence            34444 478999999999874 5556677777788999999998776666544432 111 111111100 111 36999


Q ss_pred             EEEc--CCC------cccHHHHHhccccCCEEEEecCC
Q 027668          110 IIDT--VSA------VHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       110 vid~--~g~------~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      |+..  .-.      ...++.+.+.|+|||.++.....
T Consensus       121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~  158 (263)
T PTZ00098        121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC  158 (263)
T ss_pred             EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            9852  111      12456678899999999987653

>PRK08264 short chain dehydrogenase; Validated

Probab=96.99  E-value=0.0067  Score=45.69  Aligned_cols=71  Identities=25%  Similarity=0.317  Sum_probs=51.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCC--cE-EecCCCHHHHHHhc---CCccEEEEc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA--DS-FLVSRDQDEMQAAM---GTMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~--~~-v~~~~~~~~~~~~~---~~~d~vid~  113 (220)
                      .+.+++|.|+ |.+|..+++.+...|+ +|++++++.++.+.    .+.  .. ..|..+.+.+.+..   +.+|++|.+
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   80 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD----LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNN   80 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh----cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEEC
Confidence            4678999997 9999999999999999 99999988765432    332  22 13444555554433   368999999


Q ss_pred             CCC
Q 027668          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        81 ag~   83 (238)
T PRK08264         81 AGI   83 (238)
T ss_pred             CCc
Confidence            887

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=96.99  E-value=0.018  Score=43.71  Aligned_cols=70  Identities=19%  Similarity=0.211  Sum_probs=48.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC--c-EEecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--D-SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~--~-~v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +++++||.|+ |.+|..+++.+...|++|++++++.     . +..+.  . ...|-.+.+.+.+.       .+.+|++
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~-----~-~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF-----L-TQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVL   80 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch-----h-hhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5688999997 8999999999999999999998875     1 12222  1 11244444433332       2368999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      |.++|..
T Consensus        81 i~~ag~~   87 (252)
T PRK08220         81 VNAAGIL   87 (252)
T ss_pred             EECCCcC
Confidence            9998863

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.0085  Score=46.31  Aligned_cols=76  Identities=20%  Similarity=0.267  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCcEE---ecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADSF---LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~~v---~~~~~~~~~~~~-------~~~~  107 (220)
                      +..+++|.|+ |.+|..+++.+...|++|++++++.++...+..   ..+....   .|..+.+.+.++       .+++
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEI   88 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            3468999997 999999999999999999999887665444322   2233221   244444444322       2478


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |.+|.++|..
T Consensus        89 d~vi~~Ag~~   98 (274)
T PRK07775         89 EVLVSGAGDT   98 (274)
T ss_pred             CEEEECCCcC
Confidence            9999998763

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=96.99  E-value=0.024  Score=45.82  Aligned_cols=75  Identities=13%  Similarity=0.095  Sum_probs=47.5

Q ss_pred             CCCEEEEEcC-chHHHH--HHHHHHHCCCeEEEEeCCcc---------------cHHHHHHHcCCcE-E--ecCCCHHHH
Q 027668           42 PGMHVGVVGL-GGLGHV--AVKFAKAMGVKVTVISTSPS---------------KKSEAVERLGADS-F--LVSRDQDEM  100 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~--~~~~~~~~g~~v~~~~~~~~---------------~~~~~~~~~g~~~-v--~~~~~~~~~  100 (220)
                      -++++||.|+ +++|++  .++.+ ..|++++++....+               ..+.+.++.|... .  .|-.+.+.+
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v  118 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIK  118 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence            4578999996 899999  56666 89998888774221               1233445666432 2  234443332


Q ss_pred             H-------HhcCCccEEEEcCCCc
Q 027668          101 Q-------AAMGTMDGIIDTVSAV  117 (220)
Q Consensus       101 ~-------~~~~~~d~vid~~g~~  117 (220)
                      .       +..+++|+++++++.+
T Consensus       119 ~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        119 QKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHhcCCCCEEEECCccC
Confidence            2       2235799999999876

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.0057  Score=47.67  Aligned_cols=76  Identities=24%  Similarity=0.292  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc---------ccHHHHHHHc---CCcE---EecCCCHHHHHHh-
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP---------SKKSEAVERL---GADS---FLVSRDQDEMQAA-  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~---------~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-  103 (220)
                      .+++++||.|+ +++|..+++.+...|++|++++++.         ++.+.+.+++   +...   ..|-.+.+.+.++ 
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            45789999997 8999999999999999999887654         4344433333   3221   1244444333221 


Q ss_pred             ------cCCccEEEEcCCC
Q 027668          104 ------MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ------~~~~d~vid~~g~  116 (220)
                            .+.+|++|+++|.
T Consensus        84 ~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         84 DAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence                  2479999999886

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.98  E-value=0.0044  Score=53.43  Aligned_cols=92  Identities=17%  Similarity=0.208  Sum_probs=68.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEEcCCCcccHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~~~  121 (220)
                      ++|+|.|.|.+|+.+++.++..|.++++++.++++.+.+ +++|...++ |..+++..++.. +.+|.++-+.++.....
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~-~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLM-RKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHH-HhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            579999999999999999999999999999999888777 678876544 445556655543 38999999998865332


Q ss_pred             HH---HhccccCCEEEEe
Q 027668          122 PL---IGLLKSQGKLVLL  136 (220)
Q Consensus       122 ~~---~~~l~~~g~iv~~  136 (220)
                      ..   .+...|..+++.-
T Consensus       480 ~i~~~~r~~~p~~~IiaR  497 (601)
T PRK03659        480 KIVELCQQHFPHLHILAR  497 (601)
T ss_pred             HHHHHHHHHCCCCeEEEE
Confidence            33   3334456566543

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.98  E-value=0.0029  Score=47.61  Aligned_cols=33  Identities=39%  Similarity=0.627  Sum_probs=28.8

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      ..+|+|+|+|++|..++..+...|. ++++++.+
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D   54 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD   54 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            4789999999999999999999999 77777554

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=96.98  E-value=0.011  Score=44.50  Aligned_cols=100  Identities=26%  Similarity=0.345  Sum_probs=70.7

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCC---cEE-ecCCCHHHHHHhcC-CccEEEEc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA---DSF-LVSRDQDEMQAAMG-TMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~---~~v-~~~~~~~~~~~~~~-~~d~vid~  113 (220)
                      ..||++||=+|+| +|-.+..+++..|- +|+.++-++..++.+.++..-   ..+ +...+.+.+. +.+ .||+|.-+
T Consensus        49 ~~~g~~vLDva~G-TGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~  126 (238)
T COG2226          49 IKPGDKVLDVACG-TGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTIS  126 (238)
T ss_pred             CCCCCEEEEecCC-ccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEee
Confidence            4589999999887 49999999998876 999999999987777555442   111 1122223322 222 78988776


Q ss_pred             CCCc------ccHHHHHhccccCCEEEEecCCCC
Q 027668          114 VSAV------HPLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       114 ~g~~------~~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      .|-.      ..+..+.+.|+|+|+++.+.....
T Consensus       127 fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p  160 (238)
T COG2226         127 FGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKP  160 (238)
T ss_pred             ehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            6653      246778899999999998877653

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.98  E-value=0.011  Score=46.58  Aligned_cols=88  Identities=19%  Similarity=0.216  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc-
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP-  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~-  119 (220)
                      -.|++|.|+|-|.+|...++.++..|.+|++..+.....+.+ +..|+. +.      .+.+.....|+|+-++..... 
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A-~~~G~~-v~------sl~Eaak~ADVV~llLPd~~t~   85 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVA-KADGFE-VM------SVSEAVRTAQVVQMLLPDEQQA   85 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHH-HHcCCE-EC------CHHHHHhcCCEEEEeCCChHHH
Confidence            467899999999999999999999999999887664333333 455664 21      244455578999998876432 


Q ss_pred             --H-HHHHhccccCCEEEEe
Q 027668          120 --L-MPLIGLLKSQGKLVLL  136 (220)
Q Consensus       120 --~-~~~~~~l~~~g~iv~~  136 (220)
                        + ...+..|+++..++..
T Consensus        86 ~V~~~eil~~MK~GaiL~f~  105 (335)
T PRK13403         86 HVYKAEVEENLREGQMLLFS  105 (335)
T ss_pred             HHHHHHHHhcCCCCCEEEEC
Confidence              2 2355667777666544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.98  E-value=0.0066  Score=50.52  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=56.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHh-cCCccEEEEcCCCcc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAVH  118 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~~  118 (220)
                      +|+|+|+|.+|..+++.+...|.+++++++++++.+.+.+..|...+. +..+.+.+.+. ..++|.+|-+++...
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~   77 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE   77 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence            588999999999999999999999999999988877764436655443 33344555544 358999999888754

>PRK08328 hypothetical protein; Provisional

Probab=96.97  E-value=0.0045  Score=46.72  Aligned_cols=33  Identities=36%  Similarity=0.646  Sum_probs=29.0

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      +.+|+|+|+|++|..++..+...|. ++++++.+
T Consensus        27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            4789999999999999999999999 77777654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.97  E-value=0.019  Score=45.23  Aligned_cols=92  Identities=16%  Similarity=0.185  Sum_probs=60.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc-------CCcEEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL-------GADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      +|.|+|+|.+|..++..+...|.  +++++++.+++.+.....+       +....+...+.+.    ..+.|+||.|+|
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~----l~~aDIVIitag   77 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD----CKDADIVVITAG   77 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH----hCCCCEEEEccC
Confidence            68899999999999999988885  7999998877655554443       2211111222221    258999999999


Q ss_pred             Ccc---------------cHHH---HHhccccCCEEEEecCCC
Q 027668          116 AVH---------------PLMP---LIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       116 ~~~---------------~~~~---~~~~l~~~g~iv~~g~~~  140 (220)
                      .+.               .++.   .++...+.+.++.++.+.
T Consensus        78 ~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~  120 (306)
T cd05291          78 APQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV  120 (306)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChH
Confidence            852               1122   223345678888877553

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0068  Score=46.86  Aligned_cols=75  Identities=24%  Similarity=0.345  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-------HHHHH---HHcCCcE---EecCCCHHHHHHh----
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-------KSEAV---ERLGADS---FLVSRDQDEMQAA----  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-------~~~~~---~~~g~~~---v~~~~~~~~~~~~----  103 (220)
                      .+++++|.|+ |.+|..+++.+...|++|++++++.+.       .+.+.   +..+...   ..|..+.+.+.++    
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~   84 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA   84 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence            5678999997 999999999999999999999987542       12221   2333321   1344454444322    


Q ss_pred             ---cCCccEEEEcCCC
Q 027668          104 ---MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ---~~~~d~vid~~g~  116 (220)
                         .+.+|++|.++|.
T Consensus        85 ~~~~g~id~li~~ag~  100 (273)
T PRK08278         85 VERFGGIDICVNNASA  100 (273)
T ss_pred             HHHhCCCCEEEECCCC
Confidence               2479999999886

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.018  Score=42.14  Aligned_cols=60  Identities=20%  Similarity=0.320  Sum_probs=42.5

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc---CCccEEEEcCCC
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM---GTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~---~~~d~vid~~g~  116 (220)
                      +++|.|+ |++|..+++.+... .+|++++++..           ....|-.+.+.+++..   +++|++|.++|.
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-----------~~~~D~~~~~~~~~~~~~~~~id~lv~~ag~   65 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-----------DVQVDITDPASIRALFEKVGKVDAVVSAAGK   65 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-----------ceEecCCChHHHHHHHHhcCCCCEEEECCCC
Confidence            5889997 99999999887777 89999887653           1123444444444332   478999998875

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=96.97  E-value=0.0059  Score=45.78  Aligned_cols=72  Identities=19%  Similarity=0.273  Sum_probs=53.2

Q ss_pred             EEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHhcC--CccEEEEcCCCc
Q 027668           46 VGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMG--TMDGIIDTVSAV  117 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~--~~d~vid~~g~~  117 (220)
                      |||.|+ |-+|..++..+...|.+|+.+.++.........+.+.. ...|..+.+.++++..  .+|.||.+++..
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~   76 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFS   76 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeeccccccccccccccCceEEEEeeccc
Confidence            789997 99999999999999999988888877554433333432 2335556666666554  689999999874

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.97  E-value=0.0062  Score=47.83  Aligned_cols=85  Identities=19%  Similarity=0.324  Sum_probs=57.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~--  119 (220)
                      .|++|.|+|.|.+|+.++++++.+|++|++.+++...       .+.....  .   .++++....|+|+.+....+.  
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-------~~~~~~~--~---~l~ell~~aDiv~~~lp~t~~T~  188 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-------DGISSIY--M---EPEDIMKKSDFVLISLPLTDETR  188 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-------cCccccc--C---CHHHHHhhCCEEEECCCCCchhh
Confidence            5789999999999999999999999999999876321       1221111  1   133344467888877765321  


Q ss_pred             --H-HHHHhccccCCEEEEecC
Q 027668          120 --L-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 --~-~~~~~~l~~~g~iv~~g~  138 (220)
                        + ...+..|+++..++.++.
T Consensus       189 ~li~~~~l~~mk~ga~lIN~sR  210 (303)
T PRK06436        189 GMINSKMLSLFRKGLAIINVAR  210 (303)
T ss_pred             cCcCHHHHhcCCCCeEEEECCC
Confidence              1 245667777777777764

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.96  E-value=0.0051  Score=46.96  Aligned_cols=75  Identities=20%  Similarity=0.253  Sum_probs=51.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc---EEecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~  106 (220)
                      .++.++||.|+ |.+|..+++.+...|++++++++++++. .+.++   .+..   ...|-.+.+.+...       .++
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGR   83 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            35689999997 9999999999999999999998887654 32222   2322   12244444433322       147


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|.+|.++|.
T Consensus        84 id~vi~~ag~   93 (258)
T PRK08628         84 IDGLVNNAGV   93 (258)
T ss_pred             CCEEEECCcc
Confidence            8999999984

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=96.95  E-value=0.005  Score=46.76  Aligned_cols=98  Identities=19%  Similarity=0.285  Sum_probs=60.4

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc---CCc--EEecCCCH--HHHH-HhcCCcc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL---GAD--SFLVSRDQ--DEMQ-AAMGTMD  108 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~---g~~--~v~~~~~~--~~~~-~~~~~~d  108 (220)
                      .+.||++|+=-|.|+ |.++..+++..|.  +|+.....+++.+.+.++|   |..  ..+...+-  +-+. +..+.+|
T Consensus        37 ~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~D  115 (247)
T PF08704_consen   37 DIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFD  115 (247)
T ss_dssp             T--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEE
T ss_pred             CCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCccc
Confidence            389999999988654 6666677776664  9999999998877765544   431  12222221  1111 1223789


Q ss_pred             EEEEcCCC-cccHHHHHhcc-ccCCEEEEec
Q 027668          109 GIIDTVSA-VHPLMPLIGLL-KSQGKLVLLG  137 (220)
Q Consensus       109 ~vid~~g~-~~~~~~~~~~l-~~~g~iv~~g  137 (220)
                      .||-=... ...+..+.+.| ++||+++.+.
T Consensus       116 avfLDlp~Pw~~i~~~~~~L~~~gG~i~~fs  146 (247)
T PF08704_consen  116 AVFLDLPDPWEAIPHAKRALKKPGGRICCFS  146 (247)
T ss_dssp             EEEEESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred             EEEEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence            99855544 44688899999 8999998874

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK04266 fibrillarin; Provisional

Probab=96.95  E-value=0.018  Score=43.26  Aligned_cols=97  Identities=20%  Similarity=0.186  Sum_probs=59.0

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHH---c-CCcEEe-cCCCHHHHHHhcCCccEEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVER---L-GADSFL-VSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~---~-g~~~v~-~~~~~~~~~~~~~~~d~vid  112 (220)
                      .+++|++||=+|+|+ |..+..+++..+ .+|++++.+++..+.+.+.   . +...+. +..++.....+.+.+|+++-
T Consensus        69 ~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~  147 (226)
T PRK04266         69 PIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ  147 (226)
T ss_pred             CCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE
Confidence            478999999999764 555566666654 4899999998765544222   1 222221 11111111122346999995


Q ss_pred             cCCCcc----cHHHHHhccccCCEEEEe
Q 027668          113 TVSAVH----PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       113 ~~g~~~----~~~~~~~~l~~~g~iv~~  136 (220)
                      ....+.    .+..+.+.|++||++++.
T Consensus       148 d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        148 DVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             CCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            444321    246677889999999985

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.95  E-value=0.0079  Score=46.04  Aligned_cols=75  Identities=15%  Similarity=0.298  Sum_probs=51.1

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCc--ccHHHHHHHcCC--c-EEecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSP--SKKSEAVERLGA--D-SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~--~~~~~~~~~~g~--~-~v~~~~~~~~~~~~-------~~~  106 (220)
                      .+++++|.|+   +++|.++++.+...|++|++++++.  +..+++.++++.  . ...|-.+.+.++++       .++
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g~   85 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVDG   85 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999985   6999999999999999999988653  334455445542  2 22344444433322       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        86 iD~li~nAG~   95 (256)
T PRK07889         86 LDGVVHSIGF   95 (256)
T ss_pred             CcEEEEcccc
Confidence            9999998875

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.95  E-value=0.013  Score=49.23  Aligned_cols=73  Identities=15%  Similarity=0.226  Sum_probs=51.2

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      -.+++|+|+|.|.+|++++++++..|++|++.++......++.+++|..........+.+    .++|+||-+.|-+
T Consensus        13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~----~~~d~vV~Spgi~   85 (473)
T PRK00141         13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQL----DSFSLVVTSPGWR   85 (473)
T ss_pred             ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHh----cCCCEEEeCCCCC
Confidence            345789999999999999999999999999988765544333355676543322222222    3678888776664

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.94  E-value=0.006  Score=46.73  Aligned_cols=74  Identities=18%  Similarity=0.201  Sum_probs=48.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC-cccHHHHHHH----cCCc---EEecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVER----LGAD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~-~~~~~~~~~~----~g~~---~v~~~~~~~~~~~~-------~~  105 (220)
                      +++++||.|+ +++|..++..+...|++|+++.++ +++.+...++    .+..   ...|-.+.+.+++.       .+
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   86 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDFD   86 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            5789999997 999999999999999999887654 3333333222    2322   12244454433322       24


Q ss_pred             CccEEEEcCC
Q 027668          106 TMDGIIDTVS  115 (220)
Q Consensus       106 ~~d~vid~~g  115 (220)
                      .+|++|+++|
T Consensus        87 ~id~lv~nAg   96 (260)
T PRK08416         87 RVDFFISNAI   96 (260)
T ss_pred             CccEEEECcc
Confidence            7899999886

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=96.94  E-value=0.0088  Score=44.44  Aligned_cols=97  Identities=27%  Similarity=0.236  Sum_probs=59.9

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE--EecCCCHHHHHHhcCCccEEEEc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS--FLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~--v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      .++++++||-+|+|. |..+..+++.. .+++.++.+++..+.+.+.   ++...  +...+..+.. ...+.||.|+-.
T Consensus        75 ~~~~~~~VLeiG~Gs-G~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~  151 (212)
T PRK00312         75 ELKPGDRVLEIGTGS-GYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-PAYAPFDRILVT  151 (212)
T ss_pred             CCCCCCEEEEECCCc-cHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC-CcCCCcCEEEEc
Confidence            468899999999864 55555555553 4899999887765555333   34321  1111111111 011479999865


Q ss_pred             CCCcccHHHHHhccccCCEEEEecC
Q 027668          114 VSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 ~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ...........+.|+++|+++..-.
T Consensus       152 ~~~~~~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        152 AAAPEIPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             cCchhhhHHHHHhcCCCcEEEEEEc
Confidence            5554456678889999999886543

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=96.93  E-value=0.029  Score=43.64  Aligned_cols=104  Identities=14%  Similarity=0.184  Sum_probs=70.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc--CC--cEEecCCCHHHHHHhc-------C--C
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--GA--DSFLVSRDQDEMQAAM-------G--T  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~--g~--~~v~~~~~~~~~~~~~-------~--~  106 (220)
                      -+++.|+|.|+ ++.|..++.-+...|..|++.+..++..+.+..+.  +-  +..+|-.+++.+++..       +  +
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~g  106 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGEDG  106 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccccc
Confidence            45677999998 99999999999999999999998877666664444  21  2334555555554332       2  7


Q ss_pred             ccEEEEcCCCcc--------------------------cHHHHHhccc-cCCEEEEecCCCCCcc
Q 027668          107 MDGIIDTVSAVH--------------------------PLMPLIGLLK-SQGKLVLLGAPEKPLE  144 (220)
Q Consensus       107 ~d~vid~~g~~~--------------------------~~~~~~~~l~-~~g~iv~~g~~~~~~~  144 (220)
                      .-.++|++|...                          .....+..+| ..||+|.+++..+...
T Consensus       107 LwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~GR~~  171 (322)
T KOG1610|consen  107 LWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLGRVA  171 (322)
T ss_pred             ceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccccCcc
Confidence            788899988431                          1122333444 4799999998766433

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.93  E-value=0.0067  Score=46.56  Aligned_cols=75  Identities=12%  Similarity=0.243  Sum_probs=49.0

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCcc---cHHHHHHHcCCc--EEecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLGAD--SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~~---~~~~~~~~~g~~--~v~~~~~~~~~~~~-------~~~  106 (220)
                      +++.+||.|+   +++|.++++.+...|++|+++.+.+.   ..+++.++.|..  ...|-.+.+.+.++       .++
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWDG   84 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            5688999994   58999999999999999998765432   223333333422  22344454433322       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        85 iD~lVnnAG~   94 (261)
T PRK08690         85 LDGLVHSIGF   94 (261)
T ss_pred             CcEEEECCcc
Confidence            9999999875

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.93  E-value=0.0067  Score=45.97  Aligned_cols=75  Identities=20%  Similarity=0.299  Sum_probs=51.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE-E--ecCCCHHHHHHhc-------CCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS-F--LVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~-v--~~~~~~~~~~~~~-------~~~  107 (220)
                      ++.++||.|+ |.+|..+++.+...|++|++++++.++.+++.+.   .+... +  .|..+.+.+++..       +++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999997 9999999999999999999999887665544322   23211 1  2334444433321       368


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        82 d~vi~~ag~   90 (250)
T TIGR03206        82 DVLVNNAGW   90 (250)
T ss_pred             CEEEECCCC
Confidence            999999974

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.92  E-value=0.039  Score=42.78  Aligned_cols=89  Identities=20%  Similarity=0.246  Sum_probs=65.6

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH-
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL-  123 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~-  123 (220)
                      +|-++|.|.+|.-.++-+...|..+.+.++++++..+..+..|+...-+      ..+.....|+||-|+++....... 
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s------~~eaa~~aDvVitmv~~~~~V~~V~   75 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAAS------PAEAAAEADVVITMLPDDAAVRAVL   75 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCC------HHHHHHhCCEEEEecCCHHHHHHHH
Confidence            5778899999999999999999999999999988455556778764421      223334789999999887654443 


Q ss_pred             ------HhccccCCEEEEecCC
Q 027668          124 ------IGLLKSQGKLVLLGAP  139 (220)
Q Consensus       124 ------~~~l~~~g~iv~~g~~  139 (220)
                            ...++++..++.+...
T Consensus        76 ~g~~g~~~~~~~G~i~IDmSTi   97 (286)
T COG2084          76 FGENGLLEGLKPGAIVIDMSTI   97 (286)
T ss_pred             hCccchhhcCCCCCEEEECCCC
Confidence                  3445677777777654

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.92  E-value=0.025  Score=45.17  Aligned_cols=87  Identities=23%  Similarity=0.272  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHH-HHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           42 PGMHVGVVGLGGLGHVAVKFA-KAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~-~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      .|.+|.|+|.|.+|..+++.+ +.+|++|++.+++....  . .. +..    ..  +.+.+.....|+|+-++......
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~-~~-~~~----~~--~~l~ell~~aDvIvl~lP~t~~t  214 (332)
T PRK08605        145 KDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--A-AT-YVD----YK--DTIEEAVEGADIVTLHMPATKYN  214 (332)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--H-Hh-hcc----cc--CCHHHHHHhCCEEEEeCCCCcch
Confidence            478899999999999999988 67899999888765432  1 11 111    11  12334445789999887664322


Q ss_pred             H-----HHHhccccCCEEEEecC
Q 027668          121 M-----PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ~-----~~~~~l~~~g~iv~~g~  138 (220)
                      .     ..+..++++..++.++.
T Consensus       215 ~~li~~~~l~~mk~gailIN~sR  237 (332)
T PRK08605        215 HYLFNADLFKHFKKGAVFVNCAR  237 (332)
T ss_pred             hhhcCHHHHhcCCCCcEEEECCC
Confidence            2     23566777777776654

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.92  E-value=0.0071  Score=46.62  Aligned_cols=87  Identities=13%  Similarity=0.216  Sum_probs=54.9

Q ss_pred             EEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      +|.|+|+|.+|...++.+... +.++..+...+...+...+.++.. .+  ..+.+.   +...+|+|++|++.....+.
T Consensus         3 rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~--~~d~~~---l~~~~DvVve~t~~~~~~e~   77 (265)
T PRK13303          3 KVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRV--VSSVDA---LPQRPDLVVECAGHAALKEH   77 (265)
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCee--eCCHHH---hccCCCEEEECCCHHHHHHH
Confidence            688999999999998877765 456665554333333332333221 12  222222   22479999999998765667


Q ss_pred             HHhccccCCEEEEe
Q 027668          123 LIGLLKSQGKLVLL  136 (220)
Q Consensus       123 ~~~~l~~~g~iv~~  136 (220)
                      +..+|+.|-.++..
T Consensus        78 ~~~aL~aGk~Vvi~   91 (265)
T PRK13303         78 VVPILKAGIDCAVI   91 (265)
T ss_pred             HHHHHHcCCCEEEe
Confidence            77888877666653

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.91  E-value=0.0088  Score=46.13  Aligned_cols=85  Identities=14%  Similarity=0.194  Sum_probs=55.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHC--CCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAM--GVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~--g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  121 (220)
                      +|.|+|+|.+|...++.+...  +.+++ +.+++.++.+.+.+.++.. ++  .+.+   ++..++|+|++|++.....+
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~-~~--~~~~---ell~~~DvVvi~a~~~~~~~   76 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAK-AC--LSID---ELVEDVDLVVECASVNAVEE   76 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCe-eE--CCHH---HHhcCCCEEEEcCChHHHHH
Confidence            578999999999888876654  45544 5566666666665666643 22  2222   22357999999998765455


Q ss_pred             HHHhccccCCEEEE
Q 027668          122 PLIGLLKSQGKLVL  135 (220)
Q Consensus       122 ~~~~~l~~~g~iv~  135 (220)
                      .+...++.|-.++.
T Consensus        77 ~~~~al~~Gk~Vvv   90 (265)
T PRK13304         77 VVPKSLENGKDVII   90 (265)
T ss_pred             HHHHHHHcCCCEEE
Confidence            56667776554544

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.91  E-value=0.0093  Score=48.69  Aligned_cols=76  Identities=21%  Similarity=0.296  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH------HHHHHc-CCcEE-ecCCCHHHHHHhcC----Cc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS------EAVERL-GADSF-LVSRDQDEMQAAMG----TM  107 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~------~~~~~~-g~~~v-~~~~~~~~~~~~~~----~~  107 (220)
                      ..+.+|||.|+ |.+|..+++.+...|.+|++++++..+..      ...... +.+.+ .|..+.+.+.+...    ++
T Consensus        58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~  137 (390)
T PLN02657         58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPV  137 (390)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCC
Confidence            45678999997 99999999999999999999998764321      111112 33332 35556666655433    69


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |+||+|++.
T Consensus       138 D~Vi~~aa~  146 (390)
T PLN02657        138 DVVVSCLAS  146 (390)
T ss_pred             cEEEECCcc
Confidence            999999864

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.91  E-value=0.005  Score=49.74  Aligned_cols=34  Identities=35%  Similarity=0.538  Sum_probs=30.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      .+.+|+|+|+|++|..++..+...|. ++++++.+
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D   74 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD   74 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45789999999999999999999998 88888776

>PRK00811 spermidine synthase; Provisional

Probab=96.91  E-value=0.016  Score=45.19  Aligned_cols=95  Identities=17%  Similarity=0.133  Sum_probs=59.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCC--------c--EEecCCCHHHHHHhcCCccE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA--------D--SFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~--------~--~v~~~~~~~~~~~~~~~~d~  109 (220)
                      ...++||++|+|. |..+..+++..+. +|++++.+++-.+.+.+.+..        .  .++..+-...+....+.||+
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence            3557999999865 6667777776665 899999998766655443321        1  12222222333332347999


Q ss_pred             EEEcCCCc----------ccHHHHHhccccCCEEEEe
Q 027668          110 IIDTVSAV----------HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       110 vid~~g~~----------~~~~~~~~~l~~~g~iv~~  136 (220)
                      ||--...+          +.++.+.+.|+++|.++.-
T Consensus       154 Ii~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        154 IIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            98543221          1245677899999999864

>PRK09135 pteridine reductase; Provisional

Probab=96.91  E-value=0.0079  Score=45.49  Aligned_cols=75  Identities=16%  Similarity=0.219  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHHHc----C--Cc-EEecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERL----G--AD-SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~----g--~~-~v~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.+ +.+.+.+.+    +  .. ...|..+.+.+..+       .+
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4578999997 99999999999999999999988643 233322211    1  11 12244454444322       23


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|.++|.
T Consensus        85 ~~d~vi~~ag~   95 (249)
T PRK09135         85 RLDALVNNASS   95 (249)
T ss_pred             CCCEEEECCCC
Confidence            68999999984

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.91  E-value=0.01  Score=45.31  Aligned_cols=74  Identities=27%  Similarity=0.317  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc---EEecCCCHHHHHH-------hcCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQA-------AMGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~-------~~~~~  107 (220)
                      +++++||.|+ |.+|..+++.+...|++|+++++++. ...+.++   .+.+   ...|..+.+.+.+       ..+++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999997 99999999999999999999988753 2233222   2332   1234444433322       12479


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        86 d~lv~nAg~   94 (260)
T PRK12823         86 DVLINNVGG   94 (260)
T ss_pred             eEEEECCcc
Confidence            999999874

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.91  E-value=0.019  Score=44.48  Aligned_cols=95  Identities=17%  Similarity=0.214  Sum_probs=69.9

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      ..+|+..+....++...---.|++|+|+|. ..+|.-++.++...|+.|++.......                     +
T Consensus       143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~~---------------------l  201 (287)
T PRK14176        143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTDD---------------------L  201 (287)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCCC---------------------H
Confidence            456766666666666542248999999997 569999999999999998877643221                     2


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ++.+..+|++|.++|.+..+  --+.+++|..++.+|..
T Consensus       202 ~~~~~~ADIvv~AvG~p~~i--~~~~vk~gavVIDvGin  238 (287)
T PRK14176        202 KKYTLDADILVVATGVKHLI--KADMVKEGAVIFDVGIT  238 (287)
T ss_pred             HHHHhhCCEEEEccCCcccc--CHHHcCCCcEEEEeccc
Confidence            23345789999999998654  34478899999998874

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.90  E-value=0.0096  Score=45.62  Aligned_cols=94  Identities=22%  Similarity=0.276  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc---EEecCCCHHHHHHh-cCCccEEEEc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAA-MGTMDGIIDT  113 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~-~~~~d~vid~  113 (220)
                      .++.+||-+|+|. |..+..+++ .|.+|+.++.+++..+.+.+.   .|..   .++ ..+...+... .+.||+|+..
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~-~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~-~~d~~~l~~~~~~~fD~V~~~  119 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAE-LGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFI-HCAAQDIAQHLETPVDLILFH  119 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHhcCCccceEEE-EcCHHHHhhhcCCCCCEEEeh
Confidence            4567889899874 777777776 488999999998876665433   2321   122 2222223222 2479999854


Q ss_pred             CC-----C-cccHHHHHhccccCCEEEEec
Q 027668          114 VS-----A-VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       114 ~g-----~-~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      ..     . ...+..+.+.|++||.++.+-
T Consensus       120 ~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~  149 (255)
T PRK11036        120 AVLEWVADPKSVLQTLWSVLRPGGALSLMF  149 (255)
T ss_pred             hHHHhhCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            32     1 123667888999999998653

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.89  E-value=0.0078  Score=45.65  Aligned_cols=77  Identities=17%  Similarity=0.289  Sum_probs=51.7

Q ss_pred             CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc--EE--ecCC--CHHH-------HHH
Q 027668           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD--SF--LVSR--DQDE-------MQA  102 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~--~v--~~~~--~~~~-------~~~  102 (220)
                      ..++.+++|.|+ |.+|..+++.+...|++|++++++.++.+.+.+++   +..  .+  .+..  +.+.       +.+
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            457889999997 99999999998889999999999876554443332   221  11  1221  2222       222


Q ss_pred             hcCCccEEEEcCCC
Q 027668          103 AMGTMDGIIDTVSA  116 (220)
Q Consensus       103 ~~~~~d~vid~~g~  116 (220)
                      ..+.+|.+|.++|.
T Consensus        89 ~~~~id~vi~~Ag~  102 (247)
T PRK08945         89 QFGRLDGVLHNAGL  102 (247)
T ss_pred             HhCCCCEEEECCcc
Confidence            22478999998865

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.89  E-value=0.023  Score=45.06  Aligned_cols=95  Identities=17%  Similarity=0.165  Sum_probs=57.5

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH----------cCCc--EEecC-CCHHHHHHhcCCccE
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----------LGAD--SFLVS-RDQDEMQAAMGTMDG  109 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----------~g~~--~v~~~-~~~~~~~~~~~~~d~  109 (220)
                      -++|.|+|+|.+|...++.+...|.+|++.+.+++..+.+...          .|..  ..... .-...+.+...+.|+
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            3679999999999999999999999999999998755443221          1110  00000 000112233458999


Q ss_pred             EEEcCCCcccHH-----HHHhccccCCEEEEecC
Q 027668          110 IIDTVSAVHPLM-----PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       110 vid~~g~~~~~~-----~~~~~l~~~g~iv~~g~  138 (220)
                      |++|+.....++     .....++++ .++....
T Consensus        87 ViEavpE~l~vK~~lf~~l~~~~~~~-aIlaSnT  119 (321)
T PRK07066         87 IQESAPEREALKLELHERISRAAKPD-AIIASST  119 (321)
T ss_pred             EEECCcCCHHHHHHHHHHHHHhCCCC-eEEEECC
Confidence            999998763222     333444444 4554433

>PTZ00146 fibrillarin; Provisional

Probab=96.89  E-value=0.019  Score=44.65  Aligned_cols=103  Identities=16%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             hhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHH----HcCCcEEecCC-CHHHHHHhc
Q 027668           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVE----RLGADSFLVSR-DQDEMQAAM  104 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~----~~g~~~v~~~~-~~~~~~~~~  104 (220)
                      ..+..+. ++|+++||=+|+|+ |..+..++...|.  +|++++-+++..+.+.+    .-++..++... .+.......
T Consensus       123 ~g~~~l~-IkpG~~VLDLGaG~-G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~  200 (293)
T PTZ00146        123 GGVANIP-IKPGSKVLYLGAAS-GTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLV  200 (293)
T ss_pred             CCcceec-cCCCCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhccc
Confidence            4455554 79999999999875 7777888888763  79999888543222222    12343333222 222222223


Q ss_pred             CCccEEEEcCCCccc----HHHHHhccccCCEEEEe
Q 027668          105 GTMDGIIDTVSAVHP----LMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       105 ~~~d~vid~~g~~~~----~~~~~~~l~~~g~iv~~  136 (220)
                      +.+|+||-.+..++.    ...+...|+++|.+++.
T Consensus       201 ~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        201 PMVDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence            479999865554432    22456689999999984

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.89  E-value=0.012  Score=46.57  Aligned_cols=98  Identities=17%  Similarity=0.249  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHH-HCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~-~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      +....+.|+|+|..+.+-++.++ .++. ++.+.+++++..+.+++.+....-.+-...+..++...+.|+|+-|+....
T Consensus       128 ~da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~  207 (330)
T COG2423         128 KDASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE  207 (330)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC
Confidence            44567889999999988888777 4566 899999999987777654432211101111223444568999999887764


Q ss_pred             cHHHHHhccccCCEEEEecCC
Q 027668          119 PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       119 ~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      .+ ..-+.+++|-++..+|..
T Consensus       208 Pi-l~~~~l~~G~hI~aiGad  227 (330)
T COG2423         208 PV-LKAEWLKPGTHINAIGAD  227 (330)
T ss_pred             Ce-ecHhhcCCCcEEEecCCC
Confidence            22 234567899999999874

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=96.89  E-value=0.0038  Score=48.39  Aligned_cols=73  Identities=21%  Similarity=0.248  Sum_probs=50.4

Q ss_pred             EEEEcC-chHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcC-------Cc-E----EecCCCHHHHHHhcC--CccE
Q 027668           46 VGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG-------AD-S----FLVSRDQDEMQAAMG--TMDG  109 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g-------~~-~----v~~~~~~~~~~~~~~--~~d~  109 (220)
                      |||.|+ |++|..+++-+..++. +++++++++.++..+.+++.       .. .    +-|..+.+.+.+...  ++|+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi   80 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI   80 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence            789987 9999999999998887 89999999988777777772       11 1    124556778887776  9999


Q ss_pred             EEEcCCCcc
Q 027668          110 IIDTVSAVH  118 (220)
Q Consensus       110 vid~~g~~~  118 (220)
                      ||-++...+
T Consensus        81 VfHaAA~Kh   89 (293)
T PF02719_consen   81 VFHAAALKH   89 (293)
T ss_dssp             EEE------
T ss_pred             EEEChhcCC
Confidence            999988763

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.89  E-value=0.022  Score=35.74  Aligned_cols=34  Identities=29%  Similarity=0.369  Sum_probs=28.1

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVIST   74 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~   74 (220)
                      -++++++|+|+|.+|..+++.+...| .++.+.++
T Consensus        21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46789999999999999999999885 47776655

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=96.88  E-value=0.0075  Score=46.60  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=54.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC---Cc------EEecCCCHHHH--------HH
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---AD------SFLVSRDQDEM--------QA  102 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g---~~------~v~~~~~~~~~--------~~  102 (220)
                      -.|+.++|.|+ .++|.+++..+...|++|+++.+++++.++..+.+.   ..      .+.|-.+.+..        ++
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~   85 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK   85 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence            46788999997 899999999999999999999999987666544422   11      22233333222        22


Q ss_pred             hcCCccEEEEcCCCc
Q 027668          103 AMGTMDGIIDTVSAV  117 (220)
Q Consensus       103 ~~~~~d~vid~~g~~  117 (220)
                      +.+++|+.++.+|..
T Consensus        86 ~~GkidiLvnnag~~  100 (270)
T KOG0725|consen   86 FFGKIDILVNNAGAL  100 (270)
T ss_pred             hCCCCCEEEEcCCcC
Confidence            235799999988875

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.0068  Score=45.85  Aligned_cols=73  Identities=14%  Similarity=0.172  Sum_probs=50.1

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCc-EE--ecCCCHHHHHHhc----CCccEEE
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GAD-SF--LVSRDQDEMQAAM----GTMDGII  111 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~v--~~~~~~~~~~~~~----~~~d~vi  111 (220)
                      ++++|.|+ |.+|..+++.+...|++|+++++++++.+...+++    +.. .+  .|..+.+.+++..    ..+|+++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~vv   81 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIVL   81 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEEE
Confidence            47899997 99999999999999999999999887655443322    111 11  2444444443322    3579999


Q ss_pred             EcCCC
Q 027668          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      .++|.
T Consensus        82 ~~ag~   86 (243)
T PRK07102         82 IAVGT   86 (243)
T ss_pred             ECCcC
Confidence            88875

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=96.88  E-value=0.014  Score=45.99  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=31.3

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      .|+++||.|+   .++|.++++.+...|++|++ .+..++++
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~   48 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALN   48 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhh
Confidence            5789999998   78999999999999999988 55544433

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.87  E-value=0.0081  Score=46.98  Aligned_cols=85  Identities=22%  Similarity=0.231  Sum_probs=56.8

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH--
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL--  123 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~--  123 (220)
                      |.|+|.|.+|...++.+...|.+|++.++++++.+.+ .+.|....   .+   ..+.....|+||.|+.........  
T Consensus         2 IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~---~~---~~~~~~~aDivi~~vp~~~~~~~v~~   74 (291)
T TIGR01505         2 VGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADEL-LAAGAVTA---ET---ARQVTEQADVIFTMVPDSPQVEEVAF   74 (291)
T ss_pred             EEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-HHCCCccc---CC---HHHHHhcCCEEEEecCCHHHHHHHHc
Confidence            6788999999999998888999999999998877666 34554321   11   223334689999998775333322  


Q ss_pred             -----HhccccCCEEEEec
Q 027668          124 -----IGLLKSQGKLVLLG  137 (220)
Q Consensus       124 -----~~~l~~~g~iv~~g  137 (220)
                           ...++++..++..+
T Consensus        75 ~~~~~~~~~~~g~iivd~s   93 (291)
T TIGR01505        75 GENGIIEGAKPGKTLVDMS   93 (291)
T ss_pred             CcchHhhcCCCCCEEEECC
Confidence                 23344555555444

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.013  Score=44.78  Aligned_cols=75  Identities=24%  Similarity=0.246  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc----cHHHHHH---HcCCcE---EecCCCHHHHHHh-------
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS----KKSEAVE---RLGADS---FLVSRDQDEMQAA-------  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~----~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------  103 (220)
                      .+++++|.|+ |.+|..+++.+...|++|+++.....    ..+.+.+   ..+...   ..|-.+.+.+.++       
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   86 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA   86 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence            4678999997 99999999999999998776654322    2222222   234321   2344454444332       


Q ss_pred             cCCccEEEEcCCC
Q 027668          104 MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ~~~~d~vid~~g~  116 (220)
                      .+++|++|.++|.
T Consensus        87 ~~~id~li~~ag~   99 (257)
T PRK12744         87 FGRPDIAINTVGK   99 (257)
T ss_pred             hCCCCEEEECCcc
Confidence            2478999999885

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.87  E-value=0.012  Score=50.04  Aligned_cols=88  Identities=23%  Similarity=0.315  Sum_probs=62.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|+++.|+|.|.+|+.+++.++.+|++|++.++.... +.. ..+|...+    +   +.++....|+|+.++...+   
T Consensus       139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~-~~~g~~~~----~---l~ell~~aDiV~l~lP~t~~t~  209 (526)
T PRK13581        139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERA-AQLGVELV----S---LDELLARADFITLHTPLTPETR  209 (526)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHH-HhcCCEEE----c---HHHHHhhCCEEEEccCCChHhh
Confidence            4789999999999999999999999999999875432 222 35565433    1   3344456788888776542   


Q ss_pred             -cH-HHHHhccccCCEEEEecC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~  138 (220)
                       .+ ...+..|+++..++.++.
T Consensus       210 ~li~~~~l~~mk~ga~lIN~aR  231 (526)
T PRK13581        210 GLIGAEELAKMKPGVRIINCAR  231 (526)
T ss_pred             cCcCHHHHhcCCCCeEEEECCC
Confidence             22 346777888888887764

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=96.87  E-value=0.012  Score=45.37  Aligned_cols=99  Identities=18%  Similarity=0.194  Sum_probs=63.2

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHHcC------Cc--EEecCCCHHHHHHhc-CCc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERLG------AD--SFLVSRDQDEMQAAM-GTM  107 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~g------~~--~v~~~~~~~~~~~~~-~~~  107 (220)
                      .+.++++||-+|+|+ |..+..+++..|  .+|+.++.+++..+.+.++..      ..  .++.. +.+.+ .+. +.|
T Consensus        70 ~~~~~~~VLDlGcGt-G~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~-d~~~l-p~~~~sf  146 (261)
T PLN02233         70 GAKMGDRVLDLCCGS-GDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEG-DATDL-PFDDCYF  146 (261)
T ss_pred             CCCCCCEEEEECCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEc-ccccC-CCCCCCE
Confidence            467899999999875 666777777765  489999999987776643322      11  11111 11111 111 268


Q ss_pred             cEEEEcCCCc------ccHHHHHhccccCCEEEEecCCC
Q 027668          108 DGIIDTVSAV------HPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       108 d~vid~~g~~------~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      |.|+-..+-.      ..++.+.+.|+|||+++......
T Consensus       147 D~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        147 DAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             eEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            9997543322      23667888999999998876543

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=96.87  E-value=0.0038  Score=45.88  Aligned_cols=95  Identities=18%  Similarity=0.167  Sum_probs=57.8

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCcEE-ecCCCHHHHHHhcCCccEEEEcCC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADSF-LVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      ..++.+||-+|+|. |..+..+++. |.+|++++.+++..+.+.+   ..+...+ +...+.... ...+.||+|+.+..
T Consensus        28 ~~~~~~vLDiGcG~-G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~~fD~I~~~~~  104 (197)
T PRK11207         28 VVKPGKTLDLGCGN-GRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNL-TFDGEYDFILSTVV  104 (197)
T ss_pred             cCCCCcEEEECCCC-CHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhC-CcCCCcCEEEEecc
Confidence            45678999999875 7777777764 8899999999875554422   2232211 111111111 12247999987643


Q ss_pred             C--------cccHHHHHhccccCCEEEEec
Q 027668          116 A--------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       116 ~--------~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      .        ...+..+.+.|+++|.++.+.
T Consensus       105 ~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207        105 LMFLEAKTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            2        123556777889999965543

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.87  E-value=0.012  Score=46.07  Aligned_cols=87  Identities=22%  Similarity=0.268  Sum_probs=57.7

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH-
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL-  123 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~-  123 (220)
                      +|.|+|.|.+|...++.+...|.+|++.++++++.+.+ .+.|...+   .+   ..+.....|+||.|+......... 
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~-~~~g~~~~---~~---~~e~~~~~d~vi~~vp~~~~~~~v~   76 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEV-IAAGAETA---ST---AKAVAEQCDVIITMLPNSPHVKEVA   76 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHH-HHCCCeec---CC---HHHHHhcCCEEEEeCCCHHHHHHHH
Confidence            68899999999998888888999999999888776665 34554321   11   222334689999998765433333 


Q ss_pred             ------HhccccCCEEEEecC
Q 027668          124 ------IGLLKSQGKLVLLGA  138 (220)
Q Consensus       124 ------~~~l~~~g~iv~~g~  138 (220)
                            ...++++..++.++.
T Consensus        77 ~~~~~~~~~~~~g~iiid~st   97 (296)
T PRK11559         77 LGENGIIEGAKPGTVVIDMSS   97 (296)
T ss_pred             cCcchHhhcCCCCcEEEECCC
Confidence                  234455555555543

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.87  E-value=0.0056  Score=49.59  Aligned_cols=76  Identities=9%  Similarity=0.100  Sum_probs=51.5

Q ss_pred             CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      +..+.+|||.|+ |-+|..++..+...|.+|+++++........ ..++...+ .|..+.+.+.....++|+||.+++.
T Consensus        18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa~   95 (370)
T PLN02695         18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSE-DMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAAD   95 (370)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccccc-ccccceEEECCCCCHHHHHHHHhCCCEEEEcccc
Confidence            356789999997 9999999999999999999998754321111 11222222 2444445555555689999999853

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0097  Score=45.38  Aligned_cols=75  Identities=16%  Similarity=0.231  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-HHHHHH---HcCCc---EEecCCCHHHHHH-------hcCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVE---RLGAD---SFLVSRDQDEMQA-------AMGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~---~~g~~---~v~~~~~~~~~~~-------~~~~  106 (220)
                      ++++++|.|+ |.+|..+++.+...|++|++++++++. .+.+.+   ..+..   ...|-.+.+.+.+       ..+.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   86 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA   86 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999997 899999999999999999999887542 233322   22321   1124444433332       2247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        87 id~li~~ag~   96 (254)
T PRK06114         87 LTLAVNAAGI   96 (254)
T ss_pred             CCEEEECCCC
Confidence            8999999985

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.86  E-value=0.0072  Score=45.83  Aligned_cols=75  Identities=20%  Similarity=0.324  Sum_probs=49.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEE-eCCcccHHHHHH---HcCCcEE---ecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVE---RLGADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~-~~~~~~~~~~~~---~~g~~~v---~~~~~~~~~~~~-------~~~  106 (220)
                      ++.+++|.|+ |.+|+.+++.+...|++|++. .++.++.+.+.+   ..+....   .|-.+.+.+...       .++
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999997 999999999999999988764 555554444322   2343211   244444433322       237


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        83 id~vi~~ag~   92 (250)
T PRK08063         83 LDVFVNNAAS   92 (250)
T ss_pred             CCEEEECCCC
Confidence            8999999875

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0087  Score=44.66  Aligned_cols=73  Identities=22%  Similarity=0.282  Sum_probs=51.7

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHh----cC-CccEEEEcCCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAA----MG-TMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~----~~-~~d~vid~~g~  116 (220)
                      ++++|.|+ |.+|..+++.+...|++|++++++.+..+++ +..+.. ...|-.+.+.+..+    .+ ++|++|.+.|.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag~   80 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAAL-QALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAGV   80 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHH-HhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCCc
Confidence            46889987 9999999998888899999999987766555 344543 22344454444332    22 69999998876


Q ss_pred             c
Q 027668          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      .
T Consensus        81 ~   81 (222)
T PRK06953         81 Y   81 (222)
T ss_pred             c
Confidence            3

>TIGR02415 23BDH acetoin reductases

Probab=96.86  E-value=0.0076  Score=45.83  Aligned_cols=73  Identities=21%  Similarity=0.272  Sum_probs=50.6

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCCccE
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~d~  109 (220)
                      ++++|.|+ |.+|..+++.+...|++|+++.+++++.+.+.++   .+...   ..|-.+.+.+.+.       .+.+|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            36899997 9999999999999999999999887655444333   23221   1244455444332       236899


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|.++|.
T Consensus        81 vi~~ag~   87 (254)
T TIGR02415        81 MVNNAGV   87 (254)
T ss_pred             EEECCCc
Confidence            9999876

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=96.86  E-value=0.017  Score=42.84  Aligned_cols=108  Identities=22%  Similarity=0.328  Sum_probs=68.5

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC----CcEEe----cCCCHH----HHHHh---cCC
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----ADSFL----VSRDQD----EMQAA---MGT  106 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g----~~~v~----~~~~~~----~~~~~---~~~  106 (220)
                      |+++++.|+ |++|+....-+...|.++.++..+.|..+..+ +|.    ...++    |-.+..    .+++.   .+.
T Consensus         5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~a-kL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~   83 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIA-KLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGT   83 (261)
T ss_pred             CceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHH-HHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCc
Confidence            889999975 99999999999999999999988888765543 333    22222    111222    22222   247


Q ss_pred             ccEEEEcCCCcc-----------------cHHHHHhcc-----ccCCEEEEecCCCCCcccCccccc
Q 027668          107 MDGIIDTVSAVH-----------------PLMPLIGLL-----KSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus       107 ~d~vid~~g~~~-----------------~~~~~~~~l-----~~~g~iv~~g~~~~~~~~~~~~~~  151 (220)
                      .|++|+-+|-..                 ....++..+     .+||.+|..++..+-.+.+..+++
T Consensus        84 iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~pVY  150 (261)
T KOG4169|consen   84 IDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVY  150 (261)
T ss_pred             eEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccchhh
Confidence            899999888642                 112233333     267899998876654444444443

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=96.86  E-value=0.019  Score=44.05  Aligned_cols=95  Identities=22%  Similarity=0.196  Sum_probs=62.4

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc-
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV-  117 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~-  117 (220)
                      +.++++||-+|+|. |..+..+++.. +.+|+.++.++...+.+.+.+....++..+-.+.  ...+.||+|+-..... 
T Consensus        29 ~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~--~~~~~fD~v~~~~~l~~  105 (258)
T PRK01683         29 LENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASW--QPPQALDLIFANASLQW  105 (258)
T ss_pred             CcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhcc--CCCCCccEEEEccChhh
Confidence            57889999999874 77777888776 4699999999887766655443222222221111  0113799998654321 


Q ss_pred             -----ccHHHHHhccccCCEEEEec
Q 027668          118 -----HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       118 -----~~~~~~~~~l~~~g~iv~~g  137 (220)
                           ..+..+.+.|++||.++...
T Consensus       106 ~~d~~~~l~~~~~~LkpgG~~~~~~  130 (258)
T PRK01683        106 LPDHLELFPRLVSLLAPGGVLAVQM  130 (258)
T ss_pred             CCCHHHHHHHHHHhcCCCcEEEEEC
Confidence                 23666788999999998753

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.86  E-value=0.062  Score=41.94  Aligned_cols=39  Identities=28%  Similarity=0.272  Sum_probs=34.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA   82 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~   82 (220)
                      .+|.|+|+|.+|...++.+...|.+|++++.+++..+.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~   42 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKA   42 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence            578999999999999999998999999999998765555

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.85  E-value=0.051  Score=42.51  Aligned_cols=39  Identities=28%  Similarity=0.385  Sum_probs=34.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA   82 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~   82 (220)
                      .+|.|+|+|.+|...++.+...|.+|++++.++++.+.+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~   42 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNA   42 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence            579999999999999999999999999999998876543

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.85  E-value=0.0057  Score=41.16  Aligned_cols=90  Identities=18%  Similarity=0.179  Sum_probs=51.9

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCC-eEEEEeCCcc-cHHHHHHHcC----C-cEEecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPS-KKSEAVERLG----A-DSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~-~v~~~~~~~~-~~~~~~~~~g----~-~~v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      +|.|+|+ |.+|..+++++...-. +++.+..++. .-..+...++    . +..+...+.+.+    .++|+||.|++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Dvvf~a~~~   76 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL----SDVDVVFLALPH   76 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH----TTESEEEE-SCH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh----hcCCEEEecCch
Confidence            5889996 9999999998887543 6554444433 3223322222    2 222222222222    689999999998


Q ss_pred             cccHHHHHhccccCCEEEEecC
Q 027668          117 VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       117 ~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ....+..-..+++|-+++..+.
T Consensus        77 ~~~~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   77 GASKELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             HHHHHHHHHHHHTTSEEEESSS
T ss_pred             hHHHHHHHHHhhCCcEEEeCCH
Confidence            7433344444566666666544

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.85  E-value=0.023  Score=43.81  Aligned_cols=96  Identities=15%  Similarity=0.205  Sum_probs=70.0

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+..+.+..|+...---.|++|+|+|. ..+|.=++.++...|+.|++..+....                     +
T Consensus       137 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~~---------------------l  195 (278)
T PRK14172        137 FLPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTKN---------------------L  195 (278)
T ss_pred             CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCC---------------------H
Confidence            356666666666665543357999999995 899999999999999988776643221                     2


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++.+...|++|-++|.+..+.  -+.+++|..++.+|...
T Consensus       196 ~~~~~~ADIvIsAvGkp~~i~--~~~ik~gavVIDvGin~  233 (278)
T PRK14172        196 KEVCKKADILVVAIGRPKFID--EEYVKEGAIVIDVGTSS  233 (278)
T ss_pred             HHHHhhCCEEEEcCCCcCccC--HHHcCCCcEEEEeeccc
Confidence            233346899999999987543  34589999999988644

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.84  E-value=0.0061  Score=49.06  Aligned_cols=35  Identities=34%  Similarity=0.606  Sum_probs=30.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~   76 (220)
                      .+.+|+|+|+|++|..++..+...|. ++++++.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            34789999999999999999999999 788777763

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=96.84  E-value=0.035  Score=41.27  Aligned_cols=102  Identities=16%  Similarity=0.253  Sum_probs=71.7

Q ss_pred             CCCCCEEEEEc-C--chHHHHHHHHHHHCCCeEEEEeCCcc---cHHHHHHHcCCcEEe--cCCCHHHH-------HHhc
Q 027668           40 DKPGMHVGVVG-L--GGLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLGADSFL--VSRDQDEM-------QAAM  104 (220)
Q Consensus        40 ~~~~~~vlI~G-~--g~~G~~~~~~~~~~g~~v~~~~~~~~---~~~~~~~~~g~~~v~--~~~~~~~~-------~~~~  104 (220)
                      +-.|++.||.| +  -+++.-.++.++..|++...+-..+.   +.+++.+++|.+.++  |-.+.+.+       ++.-
T Consensus         3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~   82 (259)
T COG0623           3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKW   82 (259)
T ss_pred             ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhh
Confidence            35789999998 3  58999999999999999888877754   455566677776554  33333333       3333


Q ss_pred             CCccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEecCCCC
Q 027668          105 GTMDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       105 ~~~d~vid~~g~~~-----------------------------~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      +++|.++-|.+..+                             ..+.+...|+.||.++.+.....
T Consensus        83 g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs  148 (259)
T COG0623          83 GKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGS  148 (259)
T ss_pred             CcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccc
Confidence            58999998888753                             22445667888999987766543

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.84  E-value=0.0079  Score=46.16  Aligned_cols=75  Identities=16%  Similarity=0.279  Sum_probs=49.8

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCC---cccHHHHHHHcCCc--EEecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTS---PSKKSEAVERLGAD--SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~---~~~~~~~~~~~g~~--~v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+   +++|.++++.+...|++|+++.+.   .++.+++.++++..  ...|-.+.+.++++       .+.
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG   84 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence            4688999994   589999999999999999887543   33344444445532  22344444433322       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        85 iD~lvnnAG~   94 (260)
T PRK06997         85 LDGLVHSIGF   94 (260)
T ss_pred             CcEEEEcccc
Confidence            9999999874

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.0088  Score=47.13  Aligned_cols=74  Identities=22%  Similarity=0.241  Sum_probs=49.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc----------ccHHHHHH---HcCCcE---EecCCCHHHHHHh-
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP----------SKKSEAVE---RLGADS---FLVSRDQDEMQAA-  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~----------~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-  103 (220)
                      .+++++|.|+ +++|+++++.+...|++|++++++.          ++.+.+.+   ..|...   ..|-.+.+.++++ 
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   86 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV   86 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            4689999997 8999999999999999999998863          23333322   334221   2244444433322 


Q ss_pred             ------cCCccEEEEcC-C
Q 027668          104 ------MGTMDGIIDTV-S  115 (220)
Q Consensus       104 ------~~~~d~vid~~-g  115 (220)
                            .+.+|++|+++ |
T Consensus        87 ~~~~~~~g~iDilVnnA~g  105 (305)
T PRK08303         87 ERIDREQGRLDILVNDIWG  105 (305)
T ss_pred             HHHHHHcCCccEEEECCcc
Confidence                  24799999988 6

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.83  E-value=0.043  Score=42.84  Aligned_cols=38  Identities=32%  Similarity=0.457  Sum_probs=34.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      .+|.|+|+|.+|...++.+...|.+|++.+.+++..+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATA   43 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            47899999999999999988899999999999987665

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.83  E-value=0.011  Score=49.04  Aligned_cols=88  Identities=25%  Similarity=0.353  Sum_probs=58.2

Q ss_pred             EEEEEc-CchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc---H
Q 027668           45 HVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP---L  120 (220)
Q Consensus        45 ~vlI~G-~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~---~  120 (220)
                      +|.|+| .|.+|.+++..++..|.+|+++++++++....+.++|....   .+   ..+.....|+||-|+.....   +
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~---~~---~~e~~~~aDvVIlavp~~~~~~vl   75 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYA---ND---NIDAAKDADIVIISVPINVTEDVI   75 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeec---cC---HHHHhccCCEEEEecCHHHHHHHH
Confidence            588998 59999999999999999999999987765555566775311   11   11223467888888776421   2


Q ss_pred             HHHHhccccCCEEEEecC
Q 027668          121 MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~  138 (220)
                      ......++++..++.++.
T Consensus        76 ~~l~~~l~~~~iViDvsS   93 (437)
T PRK08655         76 KEVAPHVKEGSLLMDVTS   93 (437)
T ss_pred             HHHHhhCCCCCEEEEccc
Confidence            223334455666666654

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.0045  Score=47.12  Aligned_cols=72  Identities=24%  Similarity=0.291  Sum_probs=49.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++  .. ...+.. ...|..+.+.+++.       .+.+|++|.
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~--~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   81 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE--TV-DGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLVN   81 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh--hh-cCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5789999997 999999999999999999999987653  11 111122 12344444433322       247899999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        82 ~ag~   85 (252)
T PRK07856         82 NAGG   85 (252)
T ss_pred             CCCC
Confidence            9875

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.83  E-value=0.005  Score=45.95  Aligned_cols=99  Identities=20%  Similarity=0.336  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH-------HcCC----------------cEEecCC--
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE-------RLGA----------------DSFLVSR--   95 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~-------~~g~----------------~~v~~~~--   95 (220)
                      +..+|+|+|.|++|.+++..+...|. ++..++.+.-......+       ..|-                ..|...+  
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f  108 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDF  108 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhh
Confidence            34789999999999999999999999 77777765321111111       1111                0111011  


Q ss_pred             -CHHHHHHhcC-CccEEEEcCCCcccHHHHHh-ccccCCEEEEecCCC
Q 027668           96 -DQDEMQAAMG-TMDGIIDTVSAVHPLMPLIG-LLKSQGKLVLLGAPE  140 (220)
Q Consensus        96 -~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~-~l~~~g~iv~~g~~~  140 (220)
                       .++.+.++.. +||+||||...-..=-.++. +.+.+=.++..+...
T Consensus       109 ~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag  156 (263)
T COG1179         109 ITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAG  156 (263)
T ss_pred             hCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeecccc
Confidence             1344555554 89999999987642222333 444455566555443

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.82  E-value=0.0099  Score=46.66  Aligned_cols=89  Identities=18%  Similarity=0.222  Sum_probs=57.3

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-----EecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-----FLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-----v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      +|+|+|+|.+|...+..+...|.+|+++++++++.+.+. +.|...     .......+...+. ..+|+||-|+.... 
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~-   78 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALN-ENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQ-   78 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHH-HcCCcccCCceeecccCCCChhHc-CCCCEEEEeccccc-
Confidence            589999999999999988888999999999777666653 335421     0000000111122 57999999988764 


Q ss_pred             HHHHHhccc----cCCEEEEe
Q 027668          120 LMPLIGLLK----SQGKLVLL  136 (220)
Q Consensus       120 ~~~~~~~l~----~~g~iv~~  136 (220)
                      +..++..++    ++..++.+
T Consensus        79 ~~~~~~~l~~~l~~~~~iv~~   99 (304)
T PRK06522         79 LPAALPSLAPLLGPDTPVLFL   99 (304)
T ss_pred             HHHHHHHHhhhcCCCCEEEEe
Confidence            455555444    34456554

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=96.82  E-value=0.0091  Score=47.19  Aligned_cols=75  Identities=21%  Similarity=0.305  Sum_probs=50.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH--Hc-C----CcEE-ecCCCHHHHHHhcCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE--RL-G----ADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~--~~-g----~~~v-~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .+.+|||.|+ |-+|..++..+...|.+|++++++.+.......  .+ +    ...+ .|..+.+.+.+...++|+||.
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            3578999997 999999999999999999988887654222211  11 1    1111 133344455555668999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      +++.
T Consensus        83 ~A~~   86 (322)
T PLN02662         83 TASP   86 (322)
T ss_pred             eCCc
Confidence            8863

>PLN02244 tocopherol O-methyltransferase

Probab=96.82  E-value=0.012  Score=47.03  Aligned_cols=97  Identities=21%  Similarity=0.205  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCC-c-EEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGA-D-SFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~-~-~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      +++++||-+|+|. |..+..+++..|++|+.++.++...+.+.+   +.|. + ..+...+........+.||+|+-...
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~  195 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES  195 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence            6788999999874 667778888789999999999875544422   2232 1 11111111111001137999986433


Q ss_pred             Cc------ccHHHHHhccccCCEEEEecC
Q 027668          116 AV------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       116 ~~------~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ..      ..++.+.+.|++||++++...
T Consensus       196 ~~h~~d~~~~l~e~~rvLkpGG~lvi~~~  224 (340)
T PLN02244        196 GEHMPDKRKFVQELARVAAPGGRIIIVTW  224 (340)
T ss_pred             hhccCCHHHHHHHHHHHcCCCcEEEEEEe
Confidence            21      135677889999999998754

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.82  E-value=0.016  Score=44.61  Aligned_cols=34  Identities=32%  Similarity=0.603  Sum_probs=30.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      .+.+|+|+|+|++|..++..+...|. ++++++.+
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            45789999999999999999999997 88888765

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.81  E-value=0.01  Score=41.72  Aligned_cols=88  Identities=22%  Similarity=0.229  Sum_probs=56.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .+++|.|+|-|+.|.+.++-++..|.+|++..+...+..+.+++-|.+..       .+.+.....|+|+-.+....   
T Consensus         3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-------~~~eAv~~aDvV~~L~PD~~q~~   75 (165)
T PF07991_consen    3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-------SVAEAVKKADVVMLLLPDEVQPE   75 (165)
T ss_dssp             CTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-------EHHHHHHC-SEEEE-S-HHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-------cHHHHHhhCCEEEEeCChHHHHH
Confidence            47899999999999999999999999999999988744444477786522       23334457899998887641   


Q ss_pred             cH-HHHHhccccCCEEEEe
Q 027668          119 PL-MPLIGLLKSQGKLVLL  136 (220)
Q Consensus       119 ~~-~~~~~~l~~~g~iv~~  136 (220)
                      .+ +.....|+++-.++..
T Consensus        76 vy~~~I~p~l~~G~~L~fa   94 (165)
T PF07991_consen   76 VYEEEIAPNLKPGATLVFA   94 (165)
T ss_dssp             HHHHHHHHHS-TT-EEEES
T ss_pred             HHHHHHHhhCCCCCEEEeC
Confidence            12 2344567777766654

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.81  E-value=0.062  Score=42.56  Aligned_cols=96  Identities=16%  Similarity=0.176  Sum_probs=65.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHH-CCC-eEEEEeCCcccHHHHHHHc---CCcEEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVERL---GADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~-~g~-~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      +..+++.|+|+|..+..-++.+.. +.. +|.+.+++.++.+.+++.+   +......    +..++...+.|+|+.|++
T Consensus       126 ~d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~----~~~~~av~~ADIV~taT~  201 (315)
T PRK06823        126 QHVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTT----LDAAEVAHAANLIVTTTP  201 (315)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEE----CCHHHHhcCCCEEEEecC
Confidence            445788899999999888876664 455 8999999999877665433   4332211    123344568999999887


Q ss_pred             CcccHHHHHhccccCCEEEEecCCCC
Q 027668          116 AVHPLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      ....+- -.+.+++|-.+..+|....
T Consensus       202 s~~P~~-~~~~l~~G~hi~~iGs~~p  226 (315)
T PRK06823        202 SREPLL-QAEDIQPGTHITAVGADSP  226 (315)
T ss_pred             CCCcee-CHHHcCCCcEEEecCCCCc
Confidence            654321 2346789999999987653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	220
1yqd_A	366	Sinapyl Alcohol Dehydrogenase Complexed With Nadp+		6e-89
2cf5_A	357	Crystal Structures Of The Arabidopsis Cinnamyl Alco		4e-51
1uuf_A	369	Crystal Structure Of A Zinc-Type Alcohol Dehydrogen		7e-42
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		4e-31
1ps0_A	360	Crystal Structure Of The Nadp(H)-Dependent Cinnamyl		5e-21
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		1e-19
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		8e-19
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		9e-19
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		1e-15
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		9e-15
2hcy_A	347	Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevi		2e-12
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		4e-08
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		4e-08
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		6e-08

>pdb|1YQD|A Chain A, Sinapyl Alcohol Dehydrogenase Complexed With Nadp+ Length = 366

Iteration: 1
 Score =  323 bits (827), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 156/219 (71%), Positives = 178/219 (81%)
Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
           MVA+E +++R P+  PLD  APLLCAGITVYSPL+++GLD+PG                K
Sbjct: 146 MVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVK 205
Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KVTVISTSPSKK EA++  GADSFLVSRDQ++MQAA GT+DGIIDTVSAVHPL
Sbjct: 206 FAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL 265
Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL GLLKS GKL+L+GAPEKPLELPAF L+ G KIV GS IGG+KETQEMIDFAAKHNI
Sbjct: 266 LPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNI 325
Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKST 219
            ADIEVI  DY+NTAMERLAK DVRYRFVIDV NT+ +T
Sbjct: 326 TADIEVISTDYLNTAMERLAKNDVRYRFVIDVGNTLAAT 364

>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol Dehydrogenases, Atcad5 Length = 357

Iteration: 1
 Score =  197 bits (500), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 100/214 (46%), Positives = 136/214 (63%)
Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKF 61
           V  + FVV+IPEG  ++  APLLCAG+TVYSPL  +GL +PG+               K 
Sbjct: 140 VVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKI 199
Query: 62  AKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM 121
           AKAMG  VTVIS+S  K+ EA++ LGAD +++  DQ +M     ++D +IDTV   H L 
Sbjct: 200 AKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALE 259
Query: 122 PLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIR 181
           P + LLK  GKL+L+G    PL+     L+ G K++ GS IG +KET+EM++F  +  + 
Sbjct: 260 PYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGLS 319
Query: 182 ADIEVIPADYVNTAMERLAKADVRYRFVIDVANT 215
           + IEV+  DYVNTA ERL K DVRYRFV+DV  +
Sbjct: 320 SIIEVVKMDYVNTAFERLEKNDVRYRFVVDVEGS 353

>pdb|1UUF|A Chain A, Crystal Structure Of A Zinc-Type Alcohol Dehydrogenase-Like Protein Yahk Length = 369

Iteration: 1
 Score =  166 bits (421), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 97/213 (45%), Positives = 127/213 (59%), Gaps = 4/213 (1%)
Query: 1   MVADEHFVVRIPE-GAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
           +V  E +V+RI      L A APLLCAGIT YSPLR +    PG                
Sbjct: 153 IVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQAG-PGKKVGVVGIGGLGHMGI 211
Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           K A AMG  V   +TS +K+ EA + LGAD  + SR+ DEM A + + D I++TV+A H 
Sbjct: 212 KLAHAMGAHVVAFTTSEAKR-EAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN 270
Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELP-AFPLLTGEKIVGGSLIGGLKETQEMIDFAAKH 178
           L     LLK  G + L+GAP  P + P  F L+   + + GS+IGG+ ETQEM+DF A+H
Sbjct: 271 LDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEH 330
Query: 179 NIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
            I ADIE+I AD +N A ER+ + DV+YRFVID
Sbjct: 331 GIVADIEMIRADQINEAYERMLRGDVKYRFVID 363

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score =  130 bits (328), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/221 (36%), Positives = 121/221 (54%), Gaps = 14/221 (6%)
Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
           +V DE++V+ + + APL+  APLLCAGIT YSPL+F  + K G                K
Sbjct: 136 IVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKVTK-GTKVGVAGFGGLGSMAVK 194
Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           +A AMG +V+V + +  KK +A+  +G   F     Q + +     +D II T+   + L
Sbjct: 195 YAVAMGAEVSVFARNEHKKQDALS-MGVKHFYTDPKQCKEE-----LDFIISTIPTHYDL 248
Query: 121 MPLIGLLKSQGKLVLLGAPEKPLE----LPAFPLLT-GEKIVGGSLIGGLKETQEMIDFA 175
              + LL   G L L+G P  P+E    L  F  +  G + V GSLIGG+KETQEM+DF+
Sbjct: 249 KDYLKLLTYNGDLALVGLP--PVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFS 306
Query: 176 AKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
            KHNI  +I++I    ++TA   L     ++R+VID+  + 
Sbjct: 307 IKHNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSF 347

>pdb|1PS0|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Cinnamyl Alcohol Dehydrogenase From Saccharomyces Cerevisiae Length = 360

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 107/213 (50%), Gaps = 11/213 (5%)
Query: 5   EHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKA 64
           EHFVV IPE  P    APLLC G+TVYSPL   G   PG                  +KA
Sbjct: 143 EHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGCG-PGKKVGIVGLGGIGSMGTLISKA 201
Query: 65  MGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ-DEMQAAMGTMDGIIDTVSAV----HP 119
           MG +  VIS S  K+ +A+ ++GAD ++ + ++ D  +    T D I+   S++      
Sbjct: 202 MGAETYVISRSSRKREDAM-KMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFN 260
Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHN 179
           +MP    +K  G++V +  PE+   L   P       +  S +G +KE  +++   ++ +
Sbjct: 261 IMP--KAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKD 318
Query: 180 IRADIEVIPADY--VNTAMERLAKADVRYRFVI 210
           I+  +E +P     V+ A ER+ K DVRYRF +
Sbjct: 319 IKIWVETLPVGEAGVHEAFERMEKGDVRYRFTL 351

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 5/214 (2%)
Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
           +VAD ++V  +P+       AP+LCAG+TVY  L+     +PG                +
Sbjct: 126 VVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDT-RPGQWVVISGIGGLGHVAVQ 184
Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTMDGIIDTVSAV 117
           +A+AMG++V  +    +K + A  RLGA+  + +RD D    +Q  +G   G++ T  + 
Sbjct: 185 YARAMGLRVAAVDIDDAKLNLA-RRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSP 243
Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAK 177
                 IG+++  G + L G P      P F ++     + GS++G   + QE +DFAA 
Sbjct: 244 KAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLDFAAH 303
Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
            +++A +     D VN    RL +  V  R V+D
Sbjct: 304 GDVKATVSTAKLDDVNDVFGRLREGKVEGRVVLD 337

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 7/208 (3%)
Query: 7   FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMG 66
           +VV+IP+    +  AP+ CAG+T Y  L+  G  KPG                ++AKAMG
Sbjct: 130 YVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGLGHVAVQYAKAMG 188
Query: 67  VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE---MQAAMGTMDGIIDTVSAVHPLMPL 123
           + V  +     +K E  + LGAD  +    +D    M+  +G +   + T  +       
Sbjct: 189 LNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSA 247
Query: 124 IGLLKSQGKLVLLGAPEKPLELPAF-PLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRA 182
              ++  G  VL+G P + + +P F  +L G KI+G S++G  K+ QE + FAA+  ++ 
Sbjct: 248 YNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG-SIVGTRKDLQEALQFAAEGKVKT 306
Query: 183 DIEVIPADYVNTAMERLAKADVRYRFVI 210
            IEV P + +N   +R+ K  +  R V+
Sbjct: 307 IIEVQPLEKINEVFDRMLKGQINGRVVL 334

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 102/208 (49%), Gaps = 7/208 (3%)
Query: 7   FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFAKAMG 66
           +VV+IP+    +  AP+ CAG+T Y  L+  G  KPG                ++AKAMG
Sbjct: 130 YVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGFGHVAVQYAKAMG 188
Query: 67  VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE---MQAAMGTMDGIIDTVSAVHPLMPL 123
           + V  +     +K E  + LGAD  +    +D    M+  +G +   + T  +       
Sbjct: 189 LNVVAVDIG-DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSA 247
Query: 124 IGLLKSQGKLVLLGAPEKPLELPAF-PLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRA 182
              ++  G  VL+G P + + +P F  +L G KI+G S++G  K+ QE + FAA+  ++ 
Sbjct: 248 YNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIG-SIVGTRKDLQEALQFAAEGKVKT 306
Query: 183 DIEVIPADYVNTAMERLAKADVRYRFVI 210
            IEV P + +N   +R+ K  +  R V+
Sbjct: 307 IIEVQPLEKINEVFDRMLKGQINGRVVL 334

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 103/215 (47%), Gaps = 5/215 (2%)
Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
           ++AD ++V  +P+       AP+LCAG+TVY  L+     +PG                +
Sbjct: 130 VLADPNYVGILPKNVEFAEIAPILCAGVTVYKGLKQTNA-RPGQWVAISGIGGLGHVAVQ 188
Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA---MGTMDGIIDTVSAV 117
           +A+AMG+ V  I    +K  E   +LGA   + +R +D ++A    +G   G++ T  + 
Sbjct: 189 YARAMGLHVAAIDIDDAKL-ELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSN 247
Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAK 177
                 IG+ +  G + L+G P      P F ++     + GS++G   + QE +DFA +
Sbjct: 248 SAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEALDFAGE 307
Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV 212
             ++A I     D +N  ++++    +  R V+++
Sbjct: 308 GLVKATIHPGKLDDINQILDQMRAGQIEGRIVLEM 342

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 7/217 (3%)
Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXK 60
           +VAD +FV  +P+    +  AP+LCAG+TVY  L+     KPG                +
Sbjct: 149 VVADPNFVGHLPKNIDFNEIAPVLCAGVTVYKGLKVTDT-KPGDWVVISGIGGLGHMAVQ 207
Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTVS 115
           +A+AMG+ V  +     +K +   RLGA   + ++   +  A +     G   G++ T  
Sbjct: 208 YARAMGLNVAAVDID-DRKLDLARRLGATVTVNAKTVADPAAYIRKETDGGAQGVLVTAV 266
Query: 116 AVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFA 175
           +       +G++   G + L G P     L  F ++     V GS++G   + QE +DFA
Sbjct: 267 SPKAFEQALGMVARGGTVSLNGLPPGDFPLSIFNMVLNGVTVRGSIVGTRLDLQESLDFA 326
Query: 176 AKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV 212
           A   ++A I+    + +N   + + + ++  R V+D+
Sbjct: 327 ADGKVKATIQTGKLEDINAIFDDMRQGNIEGRIVMDL 363

>pdb|2HCY|A Chain A, Yeast Alcohol Dehydrogenase I, Saccharomyces Cerevisiae Fermentative Enzyme Length = 347

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 98/217 (45%), Gaps = 7/217 (3%)
Query: 3   ADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXXKFA 62
           AD      IP+G  L   AP+LCAGITVY  L+   L                    ++A
Sbjct: 131 ADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANLMAGHWVAISGAAGGLGSLAVQYA 190
Query: 63  KAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM----GTMDGIIDTVSAV 117
           KAMG +V  I     K+ E    +G + F+  ++++D + A +    G   G+I+   + 
Sbjct: 191 KAMGYRVLGIDGGEGKE-ELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSE 249
Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELP-AFPLLTGEKIVGGSLIGGLKETQEMIDFAA 176
             +      +++ G  VL+G P         F  +     + GS +G   +T+E +DF A
Sbjct: 250 AAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALDFFA 309
Query: 177 KHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA 213
           +  +++ I+V+    +    E++ K  +  R+V+D +
Sbjct: 310 RGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTS 346

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 1   MVADEHFVVRIPEGA-PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
           +VAD  + V++P+G  P++A++ + CAG+T Y  ++  G+ KPG                
Sbjct: 125 VVAD--YAVKVPDGLDPIEASS-ITCAGVTTYKAIKVSGV-KPGDWQVIFGAGGLGNLAI 180
Query: 60  KFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ---DEMQ---AAMGTMDGIID 112
           ++AK   G KV  +  +  K + A +++GAD  + S D    DE++     +G    I+ 
Sbjct: 181 QYAKNVFGAKVIAVDINQDKLNLA-KKIGADVIINSGDVNPVDEIKKITGGLGVQSAIVC 239
Query: 113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMI 172
            V+ +      +  LK  GK+V +  P   + L    ++     V GSL+G   +  E  
Sbjct: 240 AVARI-AFEQAVASLKPMGKMVAVALPNTEMTLSVPTVVFDGVEVAGSLVGTRLDLAEAF 298
Query: 173 DFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
            F A+  ++  +     + +N  ++ +    +  R VID
Sbjct: 299 QFGAEGKVKPIVATRKLEEINDIIDEMKAGKIEGRMVID 337

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 1   MVADEHFVVRIPEGA-PLDATAPLLCAGITVYSPLRFYGLDKPGMXXXXXXXXXXXXXXX 59
           +VAD  + V++P+G  P++A++ + CAG+T Y  ++  G+ KPG                
Sbjct: 125 VVAD--YAVKVPDGLDPIEASS-ITCAGVTTYKAIKVSGV-KPGDWQVIFGAGGLGNLAI 180
Query: 60  KFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ---DEMQ---AAMGTMDGIID 112
           ++AK   G KV  +  +  K + A +++GAD  + S D    DE++     +G    I+ 
Sbjct: 181 QYAKNVFGAKVIAVDINQDKLNLA-KKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVC 239
Query: 113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMI 172
            V+ +      +  LK  GK+V +  P   + L    ++     V GSL+G   +  E  
Sbjct: 240 AVARI-AFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAGSLVGTRLDLAEAF 298
Query: 173 DFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVID 211
            F A+  ++  +     + +N  ++ +    +  R VID
Sbjct: 299 QFGAEGKVKPIVATRKLEEINDIIDEMKAGKIEGRMVID 337

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 26/205 (12%)
Query: 21  APLLCAGITVYSPLR-----FYGLDKPGMXXXXXXXXXXXXXXXKFAKAMGVKVTVISTS 75
           APL  AGIT Y  ++      Y    PG                +  K M     +    
Sbjct: 164 APLADAGITAYRAVKKAARTLY----PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV 219
Query: 76  PSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIG---------- 125
             +K +  ERLGAD  + +R +D ++  M    G       V+  M  +G          
Sbjct: 220 KEEKLKLAERLGADHVVDAR-RDPVKQVMELTRG-----RGVNVAMDFVGSQATVDYTPY 273
Query: 126 LLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADIE 185
           LL   G+L+++G   + L  P   +++ E    GSL+G   E  E++  A +  +R +++
Sbjct: 274 LLGRMGRLIIVGYGGE-LRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGKVRVEVD 332
Query: 186 VIPADYVNTAMERLAKADVRYRFVI 210
           +   D +N  +ERL K +V  R V+
Sbjct: 333 IHKLDEINDVLERLEKGEVLGRAVL 357

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	1e-143
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	1e-141
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	1e-133
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	1e-128
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	1e-128
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	1e-104
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	1e-102
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	1e-99
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	7e-48
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	5e-45
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	8e-44
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	2e-41
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	8e-22
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	2e-20
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	2e-20
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	8e-18
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	2e-17
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-16
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	3e-15
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	4e-15
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	2e-14
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	8e-14
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	3e-13
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	5e-13
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	9e-13
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	1e-12
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	2e-12
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	2e-12
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	2e-12
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	9e-12
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-11
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	2e-11
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	2e-11
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	2e-11
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	7e-11
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	8e-11
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	9e-11
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	1e-10
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	3e-10
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	3e-10
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	4e-10
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	6e-10
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	1e-09
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	3e-09
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	4e-09
3gms_A	340	Putative NADPH:quinone reductase; structural genom	4e-09
4eye_A	342	Probable oxidoreductase; structural genomics, niai	5e-09
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	4e-08
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	5e-08
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	5e-07
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	5e-07
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	7e-07
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-06
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	2e-06
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	3e-06
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	4e-06
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	5e-06
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-05
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	5e-05
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	8e-05
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	1e-04
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	2e-04
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	4e-04
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	4e-04
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	6e-04
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	7e-04
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	7e-04

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score =  402 bits (1035), Expect = e-143
 Identities = 169/220 (76%), Positives = 193/220 (87%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           MVA+E +++R P+  PLD  APLLCAGITVYSPL+++GLD+PG H+G+VGLGGLGHVAVK
Sbjct: 146 MVANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFGLDEPGKHIGIVGLGGLGHVAVK 205

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           FAKA G KVTVISTSPSKK EA++  GADSFLVSRDQ++MQAA GT+DGIIDTVSAVHPL
Sbjct: 206 FAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL 265

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
           +PL GLLKS GKL+L+GAPEKPLELPAF L+ G KIV GS IGG+KETQEMIDFAAKHNI
Sbjct: 266 LPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNI 325

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKSTP 220
            ADIEVI  DY+NTAMERLAK DVRYRFVIDV NT+ +T 
Sbjct: 326 TADIEVISTDYLNTAMERLAKNDVRYRFVIDVGNTLAATK 365

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score =  398 bits (1025), Expect = e-141
 Identities = 108/218 (49%), Positives = 148/218 (67%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  + FVV+IPEG  ++  APLLCAG+TVYSPL  +GL +PG+  G++GLGG+GH+ VK
Sbjct: 139 TVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVK 198

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            AKAMG  VTVIS+S  K+ EA++ LGAD +++  DQ +M     ++D +IDTV   H L
Sbjct: 199 IAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHAL 258

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
            P + LLK  GKL+L+G    PL+     L+ G K++ GS IG +KET+EM++F  +  +
Sbjct: 259 EPYLSLLKLDGKLILMGVINNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGL 318

Query: 181 RADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMKS 218
            + IEV+  DYVNTA ERL K DVRYRFV+DV  +   
Sbjct: 319 SSIIEVVKMDYVNTAFERLEKNDVRYRFVVDVEGSNLD 356

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score =  379 bits (975), Expect = e-133
 Identities = 107/219 (48%), Positives = 141/219 (64%), Gaps = 5/219 (2%)

Query: 1   MVADEHFVVRIPEG-APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAV 59
           +V  E +V+RI      L A APLLCAGIT YSPLR +    PG  VGVVG+GGLGH+ +
Sbjct: 153 IVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQA-GPGKKVGVVGIGGLGHMGI 211

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           K A AMG  V   +TS +K+  A + LGAD  + SR+ DEM A + + D I++TV+A H 
Sbjct: 212 KLAHAMGAHVVAFTTSEAKREAA-KALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN 270

Query: 120 LMPLIGLLKSQGKLVLLGAPEKPLELP-AFPLLTGEKIVGGSLIGGLKETQEMIDFAAKH 178
           L     LLK  G + L+GAP  P + P  F L+   + + GS+IGG+ ETQEM+DF A+H
Sbjct: 271 LDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEH 330

Query: 179 NIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTMK 217
            I ADIE+I AD +N A ER+ + DV+YRFVID   T+ 
Sbjct: 331 GIVADIEMIRADQINEAYERMLRGDVKYRFVIDNR-TLT 368

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score =  364 bits (937), Expect = e-128
 Identities = 75/216 (34%), Positives = 118/216 (54%), Gaps = 7/216 (3%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +   EHFVV IPE  P    APLLC G+TVYSPL   G   PG  VG+VGLGG+G +   
Sbjct: 139 VRVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVRNGC-GPGKKVGIVGLGGIGSMGTL 197

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ-DEMQAAMGTMDGIIDTVSAVHP 119
            +KAMG +  VIS S  K+ +A+ ++GAD ++ + ++ D  +    T D I+   S++  
Sbjct: 198 ISKAMGAETYVISRSSRKREDAM-KMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD 256

Query: 120 L--MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAK 177
           +    +   +K  G++V +  PE+   L   P       +  S +G +KE  +++   ++
Sbjct: 257 IDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSE 316

Query: 178 HNIRADIEVIPADY--VNTAMERLAKADVRYRFVID 211
            +I+  +E +P     V+ A ER+ K DVRYRF + 
Sbjct: 317 KDIKIWVETLPVGEAGVHEAFERMEKGDVRYRFTLV 352

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score =  363 bits (934), Expect = e-128
 Identities = 88/219 (40%), Positives = 127/219 (57%), Gaps = 10/219 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V DE++V+ + + APL+  APLLCAGIT YSPL+F  +   G  VGV G GGLG +AVK
Sbjct: 136 IVVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFSKV-TKGTKVGVAGFGGLGSMAVK 194

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
           +A AMG +V+V + +  KK +A+  +G   F     Q         +D II T+   + L
Sbjct: 195 YAVAMGAEVSVFARNEHKKQDAL-SMGVKHFYTDPKQ-----CKEELDFIISTIPTHYDL 248

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLE--LPAFPLLT-GEKIVGGSLIGGLKETQEMIDFAAK 177
              + LL   G L L+G P   +   L  F  +  G + V GSLIGG+KETQEM+DF+ K
Sbjct: 249 KDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFSIK 308

Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM 216
           HNI  +I++I    ++TA   L     ++R+VID+  + 
Sbjct: 309 HNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSF 347

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  304 bits (780), Expect = e-104
 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 5/217 (2%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
             A   +VV+IP+    +  AP+ CAG+T Y  L+  G  KPG  V + G+GGLGHVAV+
Sbjct: 124 CRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGLGHVAVQ 182

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTMDGIIDTVSAV 117
           +AKAMG+ V  +     K   A + LGAD  +    +D    M+  +G +   + T  + 
Sbjct: 183 YAKAMGLNVVAVDIGDEKLELA-KELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSK 241

Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAK 177
                    ++  G  VL+G P + + +P F  +     + GS++G  K+ QE + FAA+
Sbjct: 242 PAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAE 301

Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVAN 214
             ++  IEV P + +N   +R+ K  +  R V+ + +
Sbjct: 302 GKVKTIIEVQPLEKINEVFDRMLKGQINGRVVLTLED 338

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  298 bits (766), Expect = e-102
 Identities = 72/216 (33%), Positives = 117/216 (54%), Gaps = 5/216 (2%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +VAD ++V  +P+       AP+LCAG+TVY  L+     +PG  V + G+GGLGHVAV+
Sbjct: 126 VVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDT-RPGQWVVISGIGGLGHVAVQ 184

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGTMDGIIDTVSAV 117
           +A+AMG++V  +    +K + A  RLGA+  + +RD D    +Q  +G   G++ T  + 
Sbjct: 185 YARAMGLRVAAVDIDDAKLNLA-RRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSP 243

Query: 118 HPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAK 177
                 IG+++  G + L G P      P F ++     + GS++G   + QE +DFAA 
Sbjct: 244 KAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLDFAAH 303

Query: 178 HNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA 213
            +++A +     D VN    RL +  V  R V+D +
Sbjct: 304 GDVKATVSTAKLDDVNDVFGRLREGKVEGRVVLDFS 339

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  292 bits (749), Expect = 1e-99
 Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 9/220 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAV 59
             AD      IP+G  L   AP+LCAGITVY  L+   L   G  V + G  GGLG +AV
Sbjct: 129 ATADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSANL-MAGHWVAISGAAGGLGSLAV 187

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-----MQAAMGTMDGIIDTV 114
           ++AKAMG +V  I     K+      +G + F+    + +     ++A  G   G+I+  
Sbjct: 188 QYAKAMGYRVLGIDGGEGKEELF-RSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVS 246

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGEKIVGGSLIGGLKETQEMID 173
            +   +      +++ G  VL+G P         F  +     + GS +G   +T+E +D
Sbjct: 247 VSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREALD 306

Query: 174 FAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA 213
           F A+  +++ I+V+    +    E++ K  +  R+V+D +
Sbjct: 307 FFARGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTS 346

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  159 bits (404), Expect = 7e-48
 Identities = 55/217 (25%), Positives = 86/217 (39%), Gaps = 7/217 (3%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR---FYGLDKPGMHVGVVGLGGLGHV 57
           M+      +           APL  AG T    +R    +        V V G+GGL   
Sbjct: 126 MLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGIGGLAVY 185

Query: 58  AVKFAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQDE--MQAAMGTM-DGIIDT 113
            ++  KA+   +T++  S SK   +    LGAD     +D +    +   G      ID 
Sbjct: 186 TIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDL 245

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMID 173
           V        L  LL  +G ++L+G   K + L AF      K + GS  G L + ++++ 
Sbjct: 246 VGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSNYGSLNDLEDVVR 305

Query: 174 FAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
            +    I+  I  +P D +N A   L +  V  R VI
Sbjct: 306 LSESGKIKPYIIKVPLDDINKAFTNLDEGRVDGRQVI 342

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  152 bits (386), Expect = 5e-45
 Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 11/219 (5%)

Query: 1   MVADEHFVVRIPEGAPLDAT---APLLCAGITVYSPLRFYGLD-KPGMHVGVVGLGGLGH 56
           M      V+++P+    +     APL  AGIT Y  ++       PG +V +VG+GGLGH
Sbjct: 141 MRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGH 200

Query: 57  VAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQD--EMQAAMGTM--DGII 111
           +AV+  K M    V  +     K  +  ERLGAD  + +R     ++         +  +
Sbjct: 201 IAVQLLKVMTPATVIALDVKEEKL-KLAERLGADHVVDARRDPVKQVMELTRGRGVNVAM 259

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEM 171
           D V +   +     LL   G+L+++G   + L  P   +++ E    GSL+G   E  E+
Sbjct: 260 DFVGSQATVDYTPYLLGRMGRLIIVGYGGE-LRFPTIRVISSEVSFEGSLVGNYVELHEL 318

Query: 172 IDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
           +  A +  +R ++++   D +N  +ERL K +V  R V+
Sbjct: 319 VTLALQGKVRVEVDIHKLDEINDVLERLEKGEVLGRAVL 357

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  148 bits (377), Expect = 8e-44
 Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 10/218 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAV 59
           ++   +  +           APL C+GIT Y  +R   L  P   + VVG  GGLG +AV
Sbjct: 130 VIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAV 188

Query: 60  KFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDT 113
           + AKA+ G  +  +        EA +R GAD  + +  QD +           +D +ID 
Sbjct: 189 QIAKAVSGATIIGVDVREEAV-EAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDL 247

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMID 173
            ++   L      L  QGK V++G     L   A  +   E    GSL+G   +   ++ 
Sbjct: 248 NNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMR 307

Query: 174 FAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVI 210
            A    ++  I + +  +  N A++ L       R V+
Sbjct: 308 LAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVL 345

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  142 bits (361), Expect = 2e-41
 Identities = 47/216 (21%), Positives = 80/216 (37%), Gaps = 7/216 (3%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-KPGMHVGVVGLGGLGHVAV 59
           M+ D    +         A APL  AG+T Y  +        PG    V+G+GGLGHV +
Sbjct: 129 MIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGI 188

Query: 60  KFAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQ--DEMQAAMGTM--DGIIDTV 114
           +  +A+   +V  +     +       +GAD+ + S     D ++   G      + D V
Sbjct: 189 QILRAVSAARVIAVDLDDDRL-ALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFV 247

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDF 174
            A   +     ++   G + ++G          F ++     V     G   E  E++  
Sbjct: 248 GAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGFFMIPFGASVVTPYWGTRSELMEVVAL 307

Query: 175 AAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVI 210
           A    +    E    D    A  RL +  +R R V+
Sbjct: 308 ARAGRLDIHTETFTLDEGPAAYRRLREGSIRGRGVV 343

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 91.1 bits (227), Expect = 8e-22
 Identities = 48/216 (22%), Positives = 82/216 (37%), Gaps = 18/216 (8%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKF 61
           +  E  V+++ E   LD  A  +C+G T Y     Y     G  V + G G LG   V  
Sbjct: 155 LDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVI 214

Query: 62  AKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQD--EMQAAMGTM------DGIID 112
           A+++G   V VI+ SP++   A E +GAD  L  R+    E + A+  +      D I++
Sbjct: 215 ARSLGAENVIVIAGSPNRLKLA-EEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE 273

Query: 113 TVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG----EKIVGGSLIGGLKET 168
                  L+    LL+  G   + G       +P F +            G  +      
Sbjct: 274 ATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVP-FKVYEWLVLKNATFKGIWVSDTSHF 332

Query: 169 QEMIDFAAKHNIRAD---IEVIPADYVNTAMERLAK 201
            + +   +++           +P    N A+E +  
Sbjct: 333 VKTVSITSRNYQLLSKLITHRLPLKEANKALELMES 368

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 86.9 bits (216), Expect = 2e-20
 Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 9/208 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
           +V  E + V  P+       + L CAG+T +  L   G  + G  V V G GG+    ++
Sbjct: 148 VVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQ 207

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVS 115
            AKA G +V V S+S  +K +    LGAD  +   ++D ++             I++   
Sbjct: 208 IAKATGAEVIVTSSSR-EKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG 266

Query: 116 AVHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTGEKIVGGSLIGGLKETQEMIDF 174
               L   +  +   G++ ++G  E      P  PLL    +V G  +G  +  ++++  
Sbjct: 267 GAG-LGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRALEDLVGA 325

Query: 175 AAKHNIRADI-EVIPADYVNTAMERLAK 201
             +  ++  I        V  A+  L +
Sbjct: 326 VDRLGLKPVIDMRYKFTEVPEALAHLDR 353

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score = 86.5 bits (215), Expect = 2e-20
 Identities = 40/221 (18%), Positives = 83/221 (37%), Gaps = 10/221 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAV 59
           +V  E  +   P+    +  A +    +T +  +      +PG  V V+    G+   A+
Sbjct: 125 VVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAI 184

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTV 114
           + AK  G +V   + S  K     + LGAD  +     D  +       G     ++D  
Sbjct: 185 QIAKLFGARVIATAGSEDKL-RRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHT 243

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPE-KPLELPAFPLLTGEKIVGGSLIGGLKETQEMID 173
            A++    +I    + G++ + GA       LP   +   +  + GS +        ++ 
Sbjct: 244 GALY-FEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASKSRLFPILR 302

Query: 174 FAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA 213
           F  +  ++  + +V+P +        L +  V  + V+ V 
Sbjct: 303 FVEEGKLKPVVGQVLPLEAAAEGHRLLEERRVFGKVVLQVG 343

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 80.2 bits (198), Expect = 8e-18
 Identities = 39/239 (16%), Positives = 72/239 (30%), Gaps = 29/239 (12%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPL--RFYGLDKPGMHVGVVGL-GGLGHV 57
            +   + ++  P+    +  A       T Y  L  R     K G +V + G  GGLG  
Sbjct: 185 ALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSY 244

Query: 58  AVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTM---------- 107
           A +FA A G     + +SP K  E    +GA++ +    +                    
Sbjct: 245 ATQFALAGGANPICVVSSPQKA-EICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFG 303

Query: 108 ------------DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGE 154
                       D + +           + + +  G +    +      E     L    
Sbjct: 304 KRIRELTGGEDIDIVFEHPGRET-FGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSL 362

Query: 155 KIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV 212
           K + GS     +E  E     AK  I   + +V   +    A   + +   + +  +  
Sbjct: 363 KRIIGSHFANYREAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLC 421

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 79.5 bits (196), Expect = 2e-17
 Identities = 39/238 (16%), Positives = 67/238 (28%), Gaps = 27/238 (11%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPL--RFYGLDKPGMHVGVVGL-GGLGHV 57
            V     ++  P     +  A       T Y  L        K G  V + G  GGLG  
Sbjct: 177 GVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSY 236

Query: 58  AVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV 117
           A++F K  G     + +S  K+  AV  LG D  +   +             +++T   +
Sbjct: 237 AIQFVKNGGGIPVAVVSSAQKE-AAVRALGCDLVINRAELGITDDIADDPRRVVETGRKL 295

Query: 118 HPLMPLIG---------------------LLKSQGKLVLLGAPEKP-LELPAFPLLTGEK 155
             L+                         + +  G +V  G+            L    K
Sbjct: 296 AKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLK 355

Query: 156 IVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV 212
            + GS     +E Q          +   +  V P      A   +  +    +  +  
Sbjct: 356 KIVGSHGANHEEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGKVAVLC 413

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 32/213 (15%), Positives = 65/213 (30%), Gaps = 26/213 (12%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V +   V+ +P+    +  A L C  +T +       L      V +VG G + ++  +
Sbjct: 102 TVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAFEKIPL-TKQREVLIVGFGAVNNLLTQ 160

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
                G    V   S S       + G         Q   +        I D V++ +  
Sbjct: 161 MLNNAG--YVVDLVSASLSQALAAKRGVRHLYREPSQVTQK-----YFAIFDAVNSQN-A 212

Query: 121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
             L+  LK+ G ++ +         P  P  T         +G L +  +  D+      
Sbjct: 213 AALVPSLKANGHIICIQDRI---PAPIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQ 269

Query: 181 RADI--------------EVIPADYVNTAMERL 199
              +              ++   + +  A++  
Sbjct: 270 GEALLTLIAQGKMEIAAPDIFRFEQMIEALDHS 302

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 72.2 bits (178), Expect = 3e-15
 Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 11/216 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAV 59
           + A    +++  E       A L  AG+T    L    + K G  V +    GG+GH+A+
Sbjct: 112 VCASPDTIIQKLEKLSFLQAASLPTAGLTALQALNQAEV-KQGDVVLIHAGAGGVGHLAI 170

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP 119
           + AK  G   TVI+T+  +    ++ LGA+  +   ++D + A    +D +ID V     
Sbjct: 171 QLAKQKGT--TVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-DV 227

Query: 120 LMPLIGLLKSQGKLVLLGAP--EKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAK 177
            +  I  LK  G +V +      + +E+          ++    I  L    +++    +
Sbjct: 228 GIQSIDCLKETGCIVSVPTITAGRVIEVAKQKHRRAFGLLKQFNIEELHYLGKLVS---E 284

Query: 178 HNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV 212
             +R +I  +       TA E L    VR + V  V
Sbjct: 285 DKLRIEISRIFQLSEAVTAHELLETGHVRGKLVFKV 320

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 72.2 bits (178), Expect = 4e-15
 Identities = 44/216 (20%), Positives = 80/216 (37%), Gaps = 13/216 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            ++ E+  V++ +  P++   PL C   T            P       G G +G  A+ 
Sbjct: 149 ALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALL 208

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM----GTMDGIIDTVS 115
            AK  G   +  +    S+   A + LGA   + S+ QD + A      G ++  +++  
Sbjct: 209 AAKVCGASIIIAVDIVESRLELAKQ-LGATHVINSKTQDPVAAIKEITDGGVNFALESTG 267

Query: 116 AVHPLMPLIGLLKSQGKLVLLGAP--EKPLELPAFPLLTGEKIVGGSLIGGLK---ETQE 170
           +   L   +  L   GK+ ++GAP      +     LL G K + G + G         E
Sbjct: 268 SPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPE 327

Query: 171 MIDFAAKHNIRAD--IEVIPADYVNTAMERLAKADV 204
           ++    +     D  ++    D +N A     K   
Sbjct: 328 LVRLYQQGKFPFDQLVKFYAFDEINQAAIDSRKGIT 363

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 70.5 bits (173), Expect = 2e-14
 Identities = 37/226 (16%), Positives = 71/226 (31%), Gaps = 25/226 (11%)

Query: 1   MVADEHFVVRIPEGAPLDA--TAPLLCA---------GITVYSPLRFYGLDKPGMHVGVV 49
              D  ++V+IP+          PL                               V VV
Sbjct: 128 WYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVV 187

Query: 50  GLGGLGHVAVKFAKAMGVKVTVISTS--PSKKSEAVERLGADSFLVSRDQDEMQAAMGTM 107
           G G +G +     +  G++V + +       +   +E    + +  S   D+++ ++G  
Sbjct: 188 GTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKF 247

Query: 108 DGIIDTV-SAVHPLMPLIGLLKSQGKLVLLGAPEKPL----ELPAFPLLTGEKIVGGSLI 162
           D IID   + V+ L  +I LL   G L L G                ++   K + G + 
Sbjct: 248 DVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVN 307

Query: 163 GGLKETQEMIDFAAKHNIRADIEV-------IPADYVNTAMERLAK 201
           G     Q+ +   A                 +  +     ++ L +
Sbjct: 308 GQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLRE 353

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 68.4 bits (168), Expect = 8e-14
 Identities = 44/218 (20%), Positives = 84/218 (38%), Gaps = 16/218 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  E  + R+ + A L+    + C   + Y          PG    V GLG +G  A+ 
Sbjct: 154 TVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAII 213

Query: 61  FAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAM-----GTMDGIIDT 113
             K  G  ++  I  +  K  +A + LGA   L  R+ D+ +Q  +     G +D  +D 
Sbjct: 214 GCKIAGASRIIAIDINGEKFPKA-KALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 272

Query: 114 VSAVHPLMP-LIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQE-- 170
                 L   +   +   G   ++GA    + +P   ++ G + + G+  GG K      
Sbjct: 273 AGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILG-RSINGTFFGGWKSVDSVP 331

Query: 171 -MIDFAAKHNIRADI---EVIPADYVNTAMERLAKADV 204
            ++          D+     +P + +N A++ + +   
Sbjct: 332 NLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKS 369

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 21/163 (12%)

Query: 1   MVADEHFVVRIPEGAPLD----ATAPLLCAGITVY------SPLRFYGLDKPGMHVGVV- 49
            + +E  V + P+   +      + PL   GIT Y        +     +  G  + ++ 
Sbjct: 103 QLINERLVAKAPKN--ISAEQAVSLPL--TGITAYETLFDVFGISRNRNENEGKTLLIIN 158

Query: 50  GLGGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQ---AAMG 105
           G GG+G +A + AKA G  + VI+T S ++  E  +++GAD  L  ++    Q     + 
Sbjct: 159 GAGGVGSIATQIAKAYG--LRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIE 216

Query: 106 TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF 148
            +D +  T +       +I L+K +G +  + A E   +L A 
Sbjct: 217 LVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFENDQDLNAL 259

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 65.7 bits (161), Expect = 5e-13
 Identities = 36/145 (24%), Positives = 54/145 (37%), Gaps = 11/145 (7%)

Query: 1   MVADEHFVVRIPEGAPLD--ATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHV 57
              D   +   P    +   +  PL    IT +  L      + G  V +  G GG+GHV
Sbjct: 109 AAVDARLLASKPAALTMRQASVLPL--VFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHV 166

Query: 58  AVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM---GTMDGIIDTV 114
           A++ A A G    V +T+     E V  LGA     SR+ ++  A        D + DT+
Sbjct: 167 AIQIALARG--ARVFATARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTL 224

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAP 139
                L      +K  G +V     
Sbjct: 225 GGPV-LDASFSAVKRFGHVVSCLGW 248

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 65.3 bits (160), Expect = 9e-13
 Identities = 40/221 (18%), Positives = 80/221 (36%), Gaps = 26/221 (11%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
           +V     V  +P   P++  A   P+      +++            +V ++G G +G +
Sbjct: 121 IVVKRKNVFALPTDMPIEDGAFIEPITVG---LHAFHL--AQGCENKNVIIIGAGTIGLL 175

Query: 58  AVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----II 111
           A++ A A+G   VT I  S  K + A +  GA     S +    Q      +      I+
Sbjct: 176 AIQCAVALGAKSVTAIDISSEKLALA-KSFGAMQTFNSSEMSAPQMQSVLRELRFNQLIL 234

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP---LLTGEKIVGGSLIG----- 163
           +T      +   + +     +L L+G   + L L +     +L  E  V GS +      
Sbjct: 235 ETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPW 294

Query: 164 GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAK 201
             +E +       +  +  +  I      +    A+  +A+
Sbjct: 295 PGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIAR 335

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 64.5 bits (158), Expect = 1e-12
 Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 18/194 (9%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
            V     + + P+  P +      PL  A   V + L        G  V + G G LG +
Sbjct: 129 AVVPAQNIWKNPKSIPPEYATLQEPLGNA---VDTVLAG---PISGKSVLITGAGPLGLL 182

Query: 58  AVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----II 111
            +  AKA G   V V   S  ++  A +++GAD  +   ++D ++  M   DG      +
Sbjct: 183 GIAVAKASGAYPVIVSEPSDFRRELA-KKVGADYVINPFEEDVVKEVMDITDGNGVDVFL 241

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG-EKIVGGSLIGGLKET-Q 169
           +   A   L   +  +   G++ LLG     + +    L+      + G     L ET  
Sbjct: 242 EFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWY 301

Query: 170 EMIDFAAKHNIRAD 183
            +        +  D
Sbjct: 302 TVSRLLQSGKLNLD 315

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 53/226 (23%), Positives = 88/226 (38%), Gaps = 18/226 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V ++  V +I   APLD    L C   T +         +PG    V GLG +G  AV 
Sbjct: 151 TVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVM 210

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAM-----GTMDGIIDT 113
              + G  ++  +  +P K  +A +  GA  F+   D  E +   +     G +D  ++ 
Sbjct: 211 GCHSAGAKRIIAVDLNPDKFEKA-KVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC 269

Query: 114 VSAVHPLMP-LIGLLKSQGKLVLLG-APEKPLELPAFPLLTGEKIVGGSLIGGLKETQEM 171
           V  V  +   L   LK  G  VL+G      +      L+ G +   GS+ GG K    +
Sbjct: 270 VGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAG-RTWKGSMFGGFKGKDGV 328

Query: 172 ---IDFAAKHNIRADI---EVIPADYVNTAMERLAKADVRYRFVID 211
              +       ++ D      +P + VN A++ +       R V+ 
Sbjct: 329 PKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLS 373

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 64.3 bits (157), Expect = 2e-12
 Identities = 35/151 (23%), Positives = 54/151 (35%), Gaps = 12/151 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYG----LDKPGMHVGVVG-LGGLG 55
           +V   + V   P+       A L    +T +S +   G     +  G  V ++G  GG+G
Sbjct: 138 VVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVG 197

Query: 56  HVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD--EMQAAMGTMDGIIDT 113
             A++  KA      V +      SE V +LGAD  +  +     E   ++   D I+D 
Sbjct: 198 TFAIQVMKAWD--AHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDN 255

Query: 114 VSAVHPLMPLIGLLKSQ--GKLVLLGAPEKP 142
           V            LK       V L  P   
Sbjct: 256 VGG-STETWAPDFLKKWSGATYVTLVTPFLL 285

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 46/217 (21%), Positives = 78/217 (35%), Gaps = 23/217 (10%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
           ++        IP        A   PL C    ++         K G  V ++G G +G +
Sbjct: 143 VLVPRKQAFEIPLTLDPVHGAFCEPLACC---LHGVDL--SGIKAGSTVAILGGGVIGLL 197

Query: 58  AVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG------- 109
            V+ A+  G   V + +   +K+  A E +GA + +     D ++A  G +         
Sbjct: 198 TVQLARLAGATTVILSTRQATKRRLA-EEVGATATVDPSAGDVVEAIAGPVGLVPGGVDV 256

Query: 110 IIDTVSAVHPLMPLIGLLKSQGKLVLLG--APEKPLELPAFPLLTGEKIVGGSLIGGLKE 167
           +I+       +     L K+ G +V+LG     + +E+  F +L  E  V GS       
Sbjct: 257 VIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGS-FINPFV 315

Query: 168 TQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAK 201
            +   D  A   I  D  I   I  D     +   A 
Sbjct: 316 HRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAA 352

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 62.6 bits (153), Expect = 9e-12
 Identities = 51/229 (22%), Positives = 91/229 (39%), Gaps = 21/229 (9%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  +  V +I   APLD    L C   T Y         +PG    V GLGG+G   + 
Sbjct: 149 TVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIM 208

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAM-----GTMDGIIDT 113
             K  G  ++  +  +  K + A +  GA   +  +D  + +Q  +     G +D   + 
Sbjct: 209 GCKVAGASRIIGVDINKDKFARA-KEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC 267

Query: 114 VSAVHPLMPLIGLL-KSQGKLVLLG--APEKPLELPAFPLLTGEKIVGGSLIGGLKETQE 170
           +  V  +   +    K  G  V++G  A  + +    F L+TG +   G+  GG K  + 
Sbjct: 268 IGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTG-RTWKGTAFGGWKSVES 326

Query: 171 MIDFAAKHNIRADIEV-------IPADYVNTAMERLAKADVRYRFVIDV 212
           +    +++ +   I+V       +  D +N A E +       R V+ +
Sbjct: 327 VPKLVSEY-MSKKIKVDEFVTHNLSFDEINKAFELMHSGKS-IRTVVKI 373

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 12/176 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V DE  V +I   +PL+    + C   T Y           G    V GLGG+G   + 
Sbjct: 150 TVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIM 209

Query: 61  FAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM------GTMDGIIDT 113
             KA G  ++  +  +  K ++A + +GA   +  +D  +    +      G +D   + 
Sbjct: 210 GCKAAGAARIIGVDINKDKFAKA-KEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV 268

Query: 114 VSAVHPLMPLIGLL-KSQGKLVLLG--APEKPLELPAFPLLTGEKIVGGSLIGGLK 166
           +  +  ++  +    ++ G  V++G     + L +    LL+G +   G++ GG K
Sbjct: 269 IGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSG-RTWKGAIFGGFK 323

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 18/219 (8%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            V  +  V +I   APL++   + C   T Y          PG    V GLGG+G  A+ 
Sbjct: 151 TVVADIAVAKIDPKAPLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIV 209

Query: 61  FAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE-MQAAM-----GTMDGIIDT 113
             KA G  ++  + T   K  +A   LGA   L  +D D+ +   +     G +D  ++ 
Sbjct: 210 GCKAAGASRIIGVGTHKDKFPKA-IELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC 268

Query: 114 VSAVHPL-MPLIGLLKSQGKLVLLG--APEKPLELPAFPLLTGEKIVGGSLIGGLKETQ- 169
              +  +   L       G  V+LG  +P + L L    LLTG + + GS+ GG K  + 
Sbjct: 269 AGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTG-RSLKGSVFGGFKGEEV 327

Query: 170 -EMIDFAAKHNIRADI---EVIPADYVNTAMERLAKADV 204
             ++D   K  I  +      +  D +N A E L+    
Sbjct: 328 SRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQG 366

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
              +  ++ +PEG   +  A    + +T Y  L+     +PG  V V    G LG  AV+
Sbjct: 86  AVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQ 144

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL 120
            A+AMG++V   ++ P K       LGA+      +  E   A G +D +++       +
Sbjct: 145 VARAMGLRVLAAASRPEKL-ALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGKE--V 201

Query: 121 MPLIGLLKSQGKLVLLGAP--EKPLELPAFPLLTGEKIVGGS 160
              +GLL   G+LV +GA   E    +P   L+     V G 
Sbjct: 202 EESLGLLAHGGRLVYIGAAEGEVA-PIPPLRLMRRNLAVLGF 242

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 25/160 (15%), Positives = 43/160 (26%), Gaps = 21/160 (13%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV------------ 49
           V       +IP+G   +  A L     T    ++  GL  P                   
Sbjct: 112 VTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVY 171

Query: 50  -GLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ----AAM 104
            G      V ++  +  G     I+T      +  +  GA+     R  +  Q       
Sbjct: 172 GGSTATATVTMQMLRLSG--YIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTK 229

Query: 105 GTMDGIIDTVSAVHPLMPLIGLLKSQGKLV--LLGAPEKP 142
             +   +D ++ V         +   G     L   PE  
Sbjct: 230 NNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHA 269

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 59.7 bits (145), Expect = 7e-11
 Identities = 37/150 (24%), Positives = 58/150 (38%), Gaps = 11/150 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPL-RFYGLDKPGMHVG-----VVGLGGL 54
            + DE  V R P+       A L    IT +        ++KP          V G GG+
Sbjct: 125 HLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGV 184

Query: 55  GHVAVKFAKAMGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQAA---MGTMDGI 110
           G +AV+ A+     +TVI+T S  +  E V+ LGA   +        + A   +G    +
Sbjct: 185 GSIAVQIARQRT-DLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFV 243

Query: 111 IDTVSAVHPLMPLIGLLKSQGKLVLLGAPE 140
             T         +  L+  QG+  L+  P 
Sbjct: 244 FSTTHTDKHAAEIADLIAPQGRFCLIDDPS 273

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 59.6 bits (145), Expect = 8e-11
 Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 18/172 (10%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
            V    F  ++P+   L+  A   PL      V++  R     + G  V V+G G +G V
Sbjct: 129 YVHAADFCHKLPDNVSLEEGALLEPLSVG---VHACRR--AGVQLGTTVLVIGAGPIGLV 183

Query: 58  AVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV--SRDQDEMQAAM-------GTMD 108
           +V  AKA G  V   + SP +   A +  GAD  LV     ++E               +
Sbjct: 184 SVLAAKAYGAFVVCTARSPRRLEVA-KNCGADVTLVVDPAKEEESSIIERIRSAIGDLPN 242

Query: 109 GIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGS 160
             ID       +   I + ++ G L+L+G   + + +P       E  +   
Sbjct: 243 VTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSV 294

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 59.2 bits (144), Expect = 9e-11
 Identities = 39/233 (16%), Positives = 82/233 (35%), Gaps = 22/233 (9%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAV 59
            V  E  ++++P   PL + A L     T Y  L  +   +PG  V       G+G   +
Sbjct: 126 AVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVI 185

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVER---LGADSFLVSRDQDEMQAAMGTMDG-----II 111
           + A A+G++   +        +  +R   LGA+  +   +    +      D       +
Sbjct: 186 QIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLAL 245

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAP-EKPLELPAFPLLTGEKIVGGSLIGGLKETQ- 169
           + V        L+  L   G +V  G   ++P+      L+  +  + G  +   K+   
Sbjct: 246 NCVGG-KSSTELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHS 304

Query: 170 ---------EMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV 212
                     + D   +  + A     +P     +A+E   K  +  + ++ +
Sbjct: 305 PDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSKQILTM 357

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 23/169 (13%), Positives = 54/169 (31%), Gaps = 13/169 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV--GLGGLGHVA 58
            VA+    + + +    +  A ++   +T  +        +      V+  G   L  + 
Sbjct: 124 AVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVKQ-EGEKAF-VMTAGASQLCKLI 181

Query: 59  VKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDT 113
           +  AK  G +  V      +    ++ +GA   L  +  D        M        +D 
Sbjct: 182 IGLAKEEGFRPIVTVRRDEQI-ALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDA 240

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGA--PEKPLELPAFPLLTGEKIVGGS 160
           V+       +   +  + + ++ G   P+  +      L+   K + G 
Sbjct: 241 VTGPL-ASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGF 288

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 42/166 (25%), Positives = 69/166 (41%), Gaps = 9/166 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
           +     ++  P+G      A L     TV++ L        G  V +  G  G+G  A++
Sbjct: 127 LLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQ 186

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGT-MDGIIDTVSA 116
            A+A G +V   + S  K  EA ERLGA   +  R +D    ++A  G  +D I+D + A
Sbjct: 187 LARAFGAEVYATAGSTGKC-EACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA 245

Query: 117 VHPLMPLIGLLKSQGKLVLLGAP--EKPLELPAFPLLTGEKIVGGS 160
            +     I  L   G L ++         ++   P++     V GS
Sbjct: 246 AY-FERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGS 290

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 17/171 (9%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
              +  F  ++P+    +  A   PL      +++  R  G    G  V V G G +G V
Sbjct: 132 YKHNAAFCYKLPDNVTFEEGALIEPLSVG---IHACRR--GGVTLGHKVLVCGAGPIGMV 186

Query: 58  AVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-------GTMDG 109
            +  AKAMG  +V V   S ++ S+A + +GAD  L    +   + A           + 
Sbjct: 187 TLLVAKAMGAAQVVVTDLSATRLSKA-KEIGADLVLQISKESPQEIARKVEGQLGCKPEV 245

Query: 110 IIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGS 160
            I+   A   +   I   +S G LVL+G   +   +P       E  + G 
Sbjct: 246 TIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGV 296

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 37/225 (16%), Positives = 81/225 (36%), Gaps = 28/225 (12%)

Query: 1   MVADEHFVVRIPEGA-------PLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVG 50
           +  D  +   + E            A +   P   A     + +   G  +PG +V ++G
Sbjct: 165 VKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVA---YNAVIVRGGGIRPGDNVVILG 221

Query: 51  LGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
            G +G  AV   K  G  KV +   S  +++ A + LGAD  +    ++ ++A +   +G
Sbjct: 222 GGPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KELGADHVIDPTKENFVEAVLDYTNG 280

Query: 110 -----IIDTVSAVHPLMPLIGLLKSQGK-----LVLLGAPEKPLELPAFPLLTGEKIVGG 159
                 ++       + P I  +  + +     + ++   +  + L           + G
Sbjct: 281 LGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVG 340

Query: 160 SLIGGLKET-QEMIDFAAKH-NIRADI-EVIPADYVNTAMERLAK 201
           S       T   +I   A   ++   I + +  + +   ++RL  
Sbjct: 341 SQGHSGHGTFPRVISLMASGMDMTKIISKTVSMEEIPEYIKRLQT 385

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 56.8 bits (138), Expect = 6e-10
 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 11/166 (6%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
           +A +H V ++PE       A +     T Y  L      K G  V V G  GG+G  A +
Sbjct: 130 LAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQ 189

Query: 61  FAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTV 114
            A+A G  + ++ T+ ++   + V + GA      R+ + +      +       II+ +
Sbjct: 190 IARAYG--LKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEML 247

Query: 115 SAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGS 160
           + V+ L   + LL   G+++++G+    +E+     +  E  + G 
Sbjct: 248 ANVN-LSKDLSLLSHGGRVIVVGSR-GTIEINPRDTMAKESSIIGV 291

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 55.7 bits (135), Expect = 1e-09
 Identities = 33/213 (15%), Positives = 66/213 (30%), Gaps = 18/213 (8%)

Query: 1   MVADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHV 57
           +V         P+  P +  A   P   A   V++          G  V + G G +G +
Sbjct: 125 VVVPAENAWVNPKDLPFEVAAILEPFGNA---VHTVYAG-SG-VSGKSVLITGAGPIGLM 179

Query: 58  AVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRD--QDEMQAAMGT-MDGIIDT 113
           A    +A G   + V   +P + + A             +   + ++   G+ ++ +++ 
Sbjct: 180 AAMVVRASGAGPILVSDPNPYRLAFA-RPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEF 238

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG-EKIVGGSLIGGLKET-QEM 171
                 +   +  L   G+  +LG P  P+       L        G     L +T  + 
Sbjct: 239 SGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQG 298

Query: 172 IDFAAKHNIRAD--I-EVIPADYVNTAMERLAK 201
                   +     +   +P      A   LA 
Sbjct: 299 TALVYSGRVDLSPLLTHRLPLSRYREAFGLLAS 331

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 54.9 bits (133), Expect = 3e-09
 Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 8/142 (5%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
              E  ++ IPEG  L   A +  A +T +  L   G  + G +V +  GL G+G  A++
Sbjct: 122 TVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQ 181

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDTVS 115
             +  G    V + S  K  +  E+LGA +    + +D  +A +    G     I+D + 
Sbjct: 182 LTRMAGAIPLVTAGSQKKL-QMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIG 240

Query: 116 AVHPLMPLIGLLKSQGKLVLLG 137
             +     +  L   G+ VL G
Sbjct: 241 GSY-WEKNVNCLALDGRWVLYG 261

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
                FV +IP+       A      +T Y  L      + GM V V    GG+G    +
Sbjct: 102 CTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQ 161

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMGT-MDGIIDTVSA 116
               +     V  T+ + K EA++       L  R+ D   E++      +D ++D +  
Sbjct: 162 LCSTVPNVT-VFGTASTFKHEAIKDSVTH--LFDRNADYVQEVKRISAEGVDIVLDCLCG 218

Query: 117 VHPLMPLIGLLKSQGKLVLLG 137
            +     + LLK  G  +L G
Sbjct: 219 DN-TGKGLSLLKPLGTYILYG 238

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 54.5 bits (132), Expect = 4e-09
 Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 12/167 (7%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR-FYGLDKPGMHVGVVG-LGGLGHVAV 59
                FVV IP+       A +    +T +        L +    + V      +GH+  
Sbjct: 104 KTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNL-QRNDVLLVNACGSAIGHLFA 162

Query: 60  KFAKAMGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG-----IIDT 113
           + ++ +     +I+    +K +E + RLGA   + +      +  M   +G      ID+
Sbjct: 163 QLSQILN--FRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDS 220

Query: 114 VSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGS 160
           +        L   L+  G  + +G         A  +   +      
Sbjct: 221 IGG-PDGNELAFSLRPNGHFLTIGLLSGIQVNWAEIVTKAKVHANIF 266

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 54.1 bits (131), Expect = 5e-09
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 2/96 (2%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVK 60
                 ++  P          L+    T+Y      G  + G  V V+G  GG+G  A++
Sbjct: 119 AVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQ 178

Query: 61  FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD 96
            AK MG KV  +    +  +E V+ +GAD  L   +
Sbjct: 179 IAKGMGAKVIAVVNRTA-ATEFVKSVGADIVLPLEE 213

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 31/198 (15%), Positives = 60/198 (30%), Gaps = 15/198 (7%)

Query: 1   MVADEHFVVRIPEGAPLDATA--PLLCAGITVY-SPLRFYGLDKPGMHVGVVGLGGLGHV 57
             + E ++VRIP           P+      +  +       D       V+G G LG +
Sbjct: 128 FTSPEKYLVRIPRSQAELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVLGNGSLGLL 187

Query: 58  AVKFAKAMG---VKVTVISTS--PSKKSEAVERLGADSFLVSRD-QDEMQAAMGTMDGII 111
            +   K        +  +     P    + +E L A      +   +++      MD I 
Sbjct: 188 TLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIY 247

Query: 112 DTVSAVHPLMPLIGLLKSQGKLVLLGAP-----EKPLELPAFPLLTGEKIVGGSLIGGLK 166
           +        +  +  L   G   LLG P     E         ++   K + GS+   ++
Sbjct: 248 EATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVE 307

Query: 167 ETQE-MIDFAAKHNIRAD 183
             +   + F        +
Sbjct: 308 HFEAATVTFTKLPKWFLE 325

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV--GLGGLGHVAV 59
           V        +P   P      LL +G T Y  L+  G    G  V +V    GG G  A+
Sbjct: 125 VVPASIATPVPSVKP--EYLTLLVSGTTAYISLKELGGLSEGKKV-LVTAAAGGTGQFAM 181

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD 98
           + +K     V    +S  +KS  ++ LG D  +  + + 
Sbjct: 182 QLSKKAKCHVIGTCSSD-EKSAFLKSLGCDRPINYKTEP 219

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 3/110 (2%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAV 59
                   + +PEGA     A      +T    +    L +    +        LG +  
Sbjct: 131 RCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMRL-EGHSALVHTAAASNLGQMLN 189

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
           +     G+K+  I     +  + ++  GA     +     MQ     +  
Sbjct: 190 QICLKDGIKLVNIVRKQEQA-DLLKAQGAVHVCNAASPTFMQDLTEALVS 238

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 48.1 bits (115), Expect = 5e-07
 Identities = 31/232 (13%), Positives = 65/232 (28%), Gaps = 27/232 (11%)

Query: 3   ADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV--GLGGLGHVAVK 60
             +      P G  ++  A +    +T Y  L  Y    PG    +   G   +G  A +
Sbjct: 127 PAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQ 186

Query: 61  FAKAMGVKV-TVISTSPSK--KSEAVERLGADSFLVSRDQDEMQAAM----------GTM 107
             K +     +VI   P+      +++ LGA   +     +  +             G  
Sbjct: 187 IGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEA 246

Query: 108 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGEKIVGGSLIGGLK 166
              ++ V        +   L + G ++  G     P+ +P    +       G  +  L 
Sbjct: 247 KLALNCVGG-KSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELL 305

Query: 167 ET---------QEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRF 208
           +           ++I +  +  +          D      E         + 
Sbjct: 306 KNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKD 357

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 5/73 (6%)

Query: 42  PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ 101
            G +V V+GLG +G    +   A+G KV V +      +   E +G + F       +  
Sbjct: 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAE-MGMEPF----HISKAA 208

Query: 102 AAMGTMDGIIDTV 114
             +  +D  I+T+
Sbjct: 209 QELRDVDVCINTI 221

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 24/175 (13%)

Query: 1   MVADEHFVVRIP-----EGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLG 55
           +     +  +I       GA L+   PL    + +    R     + G  V + G G +G
Sbjct: 141 VNHPAVWCHKIGNMSYENGAMLE---PL---SVALAGLQRAG--VRLGDPVLICGAGPIG 192

Query: 56  HVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRD----QDEMQAAMGTMDG- 109
            + +  AKA G   + +      +   A + +  +      +    ++  +  + +  G 
Sbjct: 193 LITMLCAKAAGACPLVITDIDEGRLKFA-KEICPEVVTHKVERLSAEESAKKIVESFGGI 251

Query: 110 ----IIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGS 160
                ++       +   I  +K  GK+ ++G  +  +++P       E  +   
Sbjct: 252 EPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQ 306

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 4/99 (4%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVK 60
                    +P     +  A     G+TVY  LR     KP          GG+G +A +
Sbjct: 100 NIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQ 159

Query: 61  FAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQD 98
           +AKA+G    +I T  +  K+++  + GA   +  R++D
Sbjct: 160 WAKALG--AKLIGTVGTAQKAQSALKAGAWQVINYREED 196

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 4/101 (3%)

Query: 2    VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
            +  +H    +P    L+  A +     T Y  L   G  +PG  V +  G GG+G  A+ 
Sbjct: 1627 LLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIA 1686

Query: 61   FAKAMGVKVTVISTSPSKKSEAVER---LGADSFLVSRDQD 98
             A + G +V     S  K++    R   L    F  SRD  
Sbjct: 1687 IALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRDTS 1727

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 2   VADEHFVVRIPEGAPLD--ATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVA 58
           +     ++++P+   LD    A L+  G+T    L      KPG +V +    GG+GH+ 
Sbjct: 103 LYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIM 162

Query: 59  VKFAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQD 98
           V +A+ +G   TVI T  ++ K+E   +LG    +    QD
Sbjct: 163 VPWARHLG--ATVIGTVSTEEKAETARKLGCHHTINYSTQD 201

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVK 60
           V  E  +V++ +    +  A L+  G+TV   LR     KPG  +      GG+G +A +
Sbjct: 100 VLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQ 159

Query: 61  FAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQD 98
           +AKA+G    +I T  S  K+   + LGA   +    +D
Sbjct: 160 WAKALG--AKLIGTVSSPEKAAHAKALGAWETIDYSHED 196

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 12/110 (10%)

Query: 6   HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-----KPGMHVGV-VGLGGLGHVAV 59
             VV IP+    +  A    A +T +     + L       PG  V +    GG+G  AV
Sbjct: 2   DLVVPIPDTLADNEAATFGVAYLTAW-----HSLCEVGRLSPGERVLIHSATGGVGMAAV 56

Query: 60  KFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG 109
             AK +G ++   + S +K+ E + RLG +    SR  D     +   DG
Sbjct: 57  SIAKMIGARIYTTAGSDAKR-EMLSRLGVEYVGDSRSVDFADEILELTDG 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 49/316 (15%), Positives = 83/316 (26%), Gaps = 124/316 (39%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR--FYGLDKPGMHVGVVGLGGLG-HVA 58
           V  ++ V R+                   Y  LR     L +P  +V + G+ G G    
Sbjct: 125 VFAKYNVSRLQP-----------------YLKLRQALLEL-RPAKNVLIDGVLGSGKTWV 166

Query: 59  V-------KFAKAMGVKV---TV------------------------------ISTSPSK 78
                   K    M  K+    +                               S    +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 79  KSEAVERL--------GADSFLVSRD-QD-EMQAAMG--------TMD-GIIDTVSA--- 116
                  L          +  LV  + Q+ +   A          T    + D +SA   
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 117 VHPLM--PLIGLLKSQGK-LVLLGAPEKPLELPA-----FPLLTGEKIVGGSLIGG-LKE 167
            H  +    + L   + K L+L     +P +LP       P          S+I   +++
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-------SIIAESIRD 339

Query: 168 TQEMIDF-------AAKHNIRADIEVI-PADY-------------VNTAMERLAK--ADV 204
                D             I + + V+ PA+Y              +     L+    DV
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 205 RYRFVIDVANTM--KS 218
               V+ V N +   S
Sbjct: 400 IKSDVMVVVNKLHKYS 415

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 2   VADEHFVVRIPEGAP---LDATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHV 57
           ++ +  V+++P+G     L   A  L   +T  S        K G +V +    GG+G +
Sbjct: 105 ISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLI 164

Query: 58  AVKFAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQD 98
             +  K  G     I+ + +  K +  +  GA+  + +  +D
Sbjct: 165 LNQLLKMKG--AHTIAVASTDEKLKIAKEYGAEYLINASKED 204

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 30/105 (28%), Positives = 41/105 (39%), Gaps = 18/105 (17%)

Query: 2   VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLD-----KPGMHVGV-VGLGGLG 55
           VAD   V RIP G      A +    +T Y     Y L      +PG  + V    GG+G
Sbjct: 305 VADHRMVTRIPAGWSFARAASVPIVFLTAY-----YALVDLAGLRPGESLLVHSAAGGVG 359

Query: 56  HVAVKFAKAMGVKV--TVISTSPSKKSEAVERLGADSFLVSRDQD 98
             A++ A+ +G +V  T    S  K       L  +    SR  D
Sbjct: 360 MAAIQLARHLGAEVYATA---SEDKWQAV--ELSREHLASSRTCD 399

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364

 Score = 41.7 bits (99), Expect = 8e-05
 Identities = 17/55 (30%), Positives = 22/55 (40%)

Query: 35  RFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD 89
            F      G+ V V GLG +     K     G K+ V   + +  S AV   GAD
Sbjct: 165 AFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGAD 219

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 43  GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL 86
           G  + ++G G +G       K  G+KV  +S S  ++    +++
Sbjct: 140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSG-RERAGFDQV 182

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 43  GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL 86
              VG++G G LG    +  +A G  +   S S  K    VE  
Sbjct: 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSR-KSWPGVESY 181

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 43  GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF 91
           G  + + G G +G      A A+G+ V  ++T+        E +   + 
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTAT 185

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 28  ITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG 87
              + P  F G D  G  +G++GLG +G    K AK   ++  ++  S ++K E    L 
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMR--ILYYSRTRKEEVERELN 192

Query: 88  A 88
           A
Sbjct: 193 A 193

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 7/131 (5%)

Query: 41  KPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDE 99
           K G  V V+G+G +G ++V  A  +G  ++  + +      +     GA   +  ++ D 
Sbjct: 165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCC-DIALEYGATDIINYKNGDI 223

Query: 100 MQAAMGTMDGI-----IDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGE 154
           ++  +   DG      +     VH     + ++K    +  +    +   +       G 
Sbjct: 224 VEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGV 283

Query: 155 KIVGGSLIGGL 165
            +    + GGL
Sbjct: 284 GMGHKHIHGGL 294

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 39  LDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ 97
           L   GM V VVG  G +    +   K  G +   +  +  +  E +   GA   +V+  +
Sbjct: 17  LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPE-LRERGASDIVVANLE 75

Query: 98  DEMQAAMGTMDGIIDTVSA 116
           ++   A  ++D ++    +
Sbjct: 76  EDFSHAFASIDAVVFAAGS 94

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 42  PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ 101
            G  V V+GLG  G    +   A+G  V V + S +  +   E             DE++
Sbjct: 156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHT-----DELK 210

Query: 102 AAMGTMDGIIDTVSA 116
             +  +D  I+T+ +
Sbjct: 211 EHVKDIDICINTIPS 225

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.98
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.98
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.98
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.98
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.98
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.98
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.98
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.98
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.97
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.97
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.97
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.97
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.97
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.97
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.97
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.97
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.97
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.97
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.97
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.96
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.94
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.92
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.36
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.35
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.35
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.34
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.21
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.08
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.08
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.05
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.03
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.97
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.76
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.74
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.74
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.74
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	98.69
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.66
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.59
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.57
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	98.45
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.44
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	98.44
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.41
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.37
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	98.32
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	98.31
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.31
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	98.3
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	98.29
4dqx_A	277	Probable oxidoreductase protein; structural genomi	98.28
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	98.27
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	98.26
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	98.26
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.26
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.26
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	98.25
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	98.24
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	98.23
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	98.23
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	98.22
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	98.22
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	98.21
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	98.21
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	98.21
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.21
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.2
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.2
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	98.2
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	98.18
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	98.18
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	98.18
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	98.17
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	98.16
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	98.16
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	98.16
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	98.15
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	98.14
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.14
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	98.14
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	98.13
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	98.13
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	98.13
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	98.13
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.12
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.12
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.11
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	98.1
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.09
3imf_A	257	Short chain dehydrogenase; structural genomics, in	98.09
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	98.09
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	98.09
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	98.08
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	98.08
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	98.08
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	98.08
1spx_A	278	Short-chain reductase family member (5L265); paral	98.07
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	98.07
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	98.07
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	98.07
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	98.07
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	98.06
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.06
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.06
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	98.06
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	98.05
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	98.05
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	98.05
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	98.05
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	98.04
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	98.04
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.03
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	98.03
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	98.03
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	98.03
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	98.02
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	98.02
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	98.02
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	98.02
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	98.01
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	98.01
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	98.0
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	98.0
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	98.0
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	98.0
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	98.0
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	98.0
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	98.0
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.99
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.99
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.99
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.98
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.98
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.98
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.98
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.97
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.97
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.97
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.97
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.97
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.96
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.96
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.96
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.96
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.95
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.95
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.95
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.95
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.95
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.94
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	97.94
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.94
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.94
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.94
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.94
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.94
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.93
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.93
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.93
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.93
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.93
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.92
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.92
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.92
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	97.92
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	97.91
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.91
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.91
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.91
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.91
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.9
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.9
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.9
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.9
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	97.9
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.9
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.89
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.89
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.89
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	97.88
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.88
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.88
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.88
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.88
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.88
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.87
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.87
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.87
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.87
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.87
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.87
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.87
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.86
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.86
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.86
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.86
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.86
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.86
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.86
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.85
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.85
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.85
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.85
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.85
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.85
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.85
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.85
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.85
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.84
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.84
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.84
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.84
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.83
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.81
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.8
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.8
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	97.8
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	97.8
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.79
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.78
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.78
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.78
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.78
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.78
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.78
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.77
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.77
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.77
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.77
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.77
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.76
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.76
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.76
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.76
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.76
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.76
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.75
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	97.75
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.75
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.75
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.75
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.75
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.75
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.74
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.74
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.74
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	97.74
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.74
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.74
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.73
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.73
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	97.73
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.73
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.73
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.73
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.72
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.72
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.72
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.72
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.71
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.71
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.71
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.71
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.7
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.7
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	97.7
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.69
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.69
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.68
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.68
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.68
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.68
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.68
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.67
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.67
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.67
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.67
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.67
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.67
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.66
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.66
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.66
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.66
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.66
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.66
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.65
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.65
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	97.64
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	97.64
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.64
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.63
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.63
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	97.63
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.63
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.62
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.62
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	97.62
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.61
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.61
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.61
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.61
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	97.61
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.61
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.61
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	97.61
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.6
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.6
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	97.6
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.6
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.6
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.59
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.59
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	97.59
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.58
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.58
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	97.58
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	97.58
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.58
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.58
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.57
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	97.57
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.57
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.56
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.56
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.56
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.56
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.55
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.55
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.55
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.55
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.54
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.54
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.53
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.53
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.53
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.53
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.52
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.52
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.52
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.51
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	97.51
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.51
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.51
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.51
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	97.5
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.5
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.5
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.49
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.47
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.46
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	97.46
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.46
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.45
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.45
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.45
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.45
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.45
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	97.44
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.44
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.44
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	97.44
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.44
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	97.43
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.43
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.41
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.41
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	97.41
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.4
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	97.4
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	97.39
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.39
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.38
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.38
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.38
4e4y_A	244	Short chain dehydrogenase family protein; structur	97.38
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	97.38
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.38
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.37
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	97.37
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.37
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	97.37
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	97.36
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.36
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.36
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	97.35
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.35
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	97.34
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.34
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.34
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.34
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	97.33
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.33
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.32
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.32
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.31
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.31
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.31
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	97.3
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.3
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	97.3
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	97.29
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	97.29
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.29
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.28
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.28
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.28
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.28
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.28
4had_A	350	Probable oxidoreductase protein; structural genomi	97.27
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	97.27
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.26
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.26
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.25
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.25
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.24
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	97.24
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	97.24
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.24
3f4k_A	257	Putative methyltransferase; structural genomics, P	97.24
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.24
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.24
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	97.23
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.23
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.23
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	97.22
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.22
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.22
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.22
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.22
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.21
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.21
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.21
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.21
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	97.21
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.2
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.18
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.18
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.18
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	97.18
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	97.17
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.16
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.15
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	97.15
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.15
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.14
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.14
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.14
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.14
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.13
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	97.13
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	97.12

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=9.4e-37  Score=242.70  Aligned_cols=213  Identities=51%  Similarity=0.895  Sum_probs=190.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCC-CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK-PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++.+.|||+++++.. ++ +|++|||+|+|++|++++|+++.+|++|+++++++++++
T Consensus       140 ~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~l~~~~-~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~  218 (357)
T 2cf5_A          140 VVHQKFVVKIPEGMAVEQAAPLLCAGVTVYSPLSHFG-LKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKRE  218 (357)
T ss_dssp             EEEGGGEEECCSSCCHHHHTGGGTHHHHHHHHHHHTS-TTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHH
T ss_pred             EechhhEEECcCCCCHHHhhhhhhhHHHHHHHHHhcC-CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHH
Confidence            5788999999999999999999999999999998765 77 999999999999999999999999999999999988887


Q ss_pred             HHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcc-cCccccccCCcEEEE
Q 027668           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLE-LPAFPLLTGEKIVGG  159 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~-~~~~~~~~~~~~i~~  159 (220)
                      .+.+++|++.++++.+.+.+++.++++|+||||+|....++.++++++++|+++.+|....... ++.. ++.+++++.|
T Consensus       219 ~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g  297 (357)
T 2cf5_A          219 EALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITG  297 (357)
T ss_dssp             HHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEE
T ss_pred             HHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEE
Confidence            7755899999999888777777777999999999987678999999999999999998664433 5555 7789999999


Q ss_pred             eeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeCCcc
Q 027668          160 SLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~~  216 (220)
                      +..++.++++++++++++|.+++.+++|+++++++||+.+.+++..+|+|++++++.
T Consensus       298 ~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~~~  354 (357)
T 2cf5_A          298 SFIGSMKETEEMLEFCKEKGLSSIIEVVKMDYVNTAFERLEKNDVRYRFVVDVEGSN  354 (357)
T ss_dssp             CCSCCHHHHHHHHHHHHHTTCCCCEEEEEGGGHHHHHHHHHTTCSSSEEEEETTSCC
T ss_pred             EccCCHHHHHHHHHHHHcCCCCCceEEEeHHHHHHHHHHHHCCCCceEEEEeCCccc
Confidence            988888899999999999999988899999999999999998888899999997653

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=3.9e-36  Score=239.80  Aligned_cols=213  Identities=77%  Similarity=1.217  Sum_probs=193.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCC-CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK-PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++.+.|||+++++.. ++ +|++|||+|+|++|++++|+++.+|++|+++++++++++
T Consensus       147 ~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~al~~~~-~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~  225 (366)
T 1yqd_A          147 VANERYIIRFPDNMPLDGGAPLLCAGITVYSPLKYFG-LDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKE  225 (366)
T ss_dssp             EEEGGGCEECCTTSCTTTTGGGGTHHHHHHHHHHHTT-CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHH
T ss_pred             EEchhhEEECCCCCCHHHhhhhhhhHHHHHHHHHhcC-cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5788999999999999999999999999999998765 67 999999999999999999999999999999999998888


Q ss_pred             HHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEe
Q 027668           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGS  160 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~  160 (220)
                      .+.+++|++.++++.+.+.+.+..+++|+||||+|....++.++++++++|+++.+|......+++...++.+++++.++
T Consensus       226 ~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~  305 (366)
T 1yqd_A          226 EALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGS  305 (366)
T ss_dssp             HHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSCEEECHHHHHTTTCEEEEC
T ss_pred             HHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCCCCcCHHHHHhCCcEEEEe
Confidence            87668999999998887777777789999999999876689999999999999999987655566767778899999999


Q ss_pred             eccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeCCc
Q 027668          161 LIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      ..++.++++++++++++|.+++.+++|+++++++||+.+.+++..+|+|+.++++
T Consensus       306 ~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~~~  360 (366)
T 1yqd_A          306 GIGGMKETQEMIDFAAKHNITADIEVISTDYLNTAMERLAKNDVRYRFVIDVGNT  360 (366)
T ss_dssp             CSCCHHHHHHHHHHHHHTTCCCCEEEECGGGHHHHHHHHHTTCCSSEEEECHHHH
T ss_pred             cCCCHHHHHHHHHHHHcCCCCCceEEEcHHHHHHHHHHHHcCCcceEEEEEcccc
Confidence            8888889999999999999998889999999999999999888889999998654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=2.4e-36  Score=239.62  Aligned_cols=208  Identities=42%  Similarity=0.728  Sum_probs=186.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++++++||++++++.|||+++++. .+++|++|||+|+|++|++++|+++.+|++|++++.++++++.
T Consensus       137 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~  215 (348)
T 3two_A          137 VVDENYVISVDKNAPLEKVAPLLCAGITTYSPLKFS-KVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQD  215 (348)
T ss_dssp             EEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHHT-TCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHH
T ss_pred             EechhhEEECCCCCCHHHhhhhhhhHHHHHHHHHhc-CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            578899999999999999999999999999999877 5899999999999999999999999999999999999888876


Q ss_pred             HHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC-CCcc-cCccccc-cCCcEEE
Q 027668           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KPLE-LPAFPLL-TGEKIVG  158 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~-~~~~-~~~~~~~-~~~~~i~  158 (220)
                      + +++|++.++  .+.+.+   ..++|+||||+|....++.++++++++|+++.+|... .... ++...++ .+++++.
T Consensus       216 ~-~~lGa~~v~--~~~~~~---~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~  289 (348)
T 3two_A          216 A-LSMGVKHFY--TDPKQC---KEELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVY  289 (348)
T ss_dssp             H-HHTTCSEEE--SSGGGC---CSCEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEE
T ss_pred             H-HhcCCCeec--CCHHHH---hcCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEE
Confidence            6 789999888  333332   2389999999999877999999999999999999876 5444 6666666 8999999


Q ss_pred             EeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeCCcc
Q 027668          159 GSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~~  216 (220)
                      |+..++..+++++++++++|.+++.+++|+++++++||+.+.+++..+|+|++++++.
T Consensus       290 g~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvVi~~~~~~  347 (348)
T 3two_A          290 GSLIGGIKETQEMVDFSIKHNIYPEIDLILGKDIDTAYHNLTHGKAKFRYVIDMKKSF  347 (348)
T ss_dssp             ECCSCCHHHHHHHHHHHHHTTCCCCEEEECGGGHHHHHHHHHTTCCCSEEEEEGGGCC
T ss_pred             EEecCCHHHHHHHHHHHHhCCCCceEEEEEHHHHHHHHHHHHcCCCceEEEEecCCcC
Confidence            9999999999999999999999998899999999999999999998899999997764

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.6e-36  Score=239.48  Aligned_cols=212  Identities=50%  Similarity=0.805  Sum_probs=187.2

Q ss_pred             cccCcceeeCCCC-CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEG-APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~-~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|++ +++++||++++.+.|||+++++. .+++|++|||+|+|++|++++|+++.+|++|+++++++++++
T Consensus       154 ~v~~~~~~~~P~~~ls~~~aa~l~~~~~tA~~al~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~  232 (369)
T 1uuf_A          154 VVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHW-QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKRE  232 (369)
T ss_dssp             EEEGGGCEECCSCGGGHHHHGGGGTHHHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             EEcchhEEECCCCCCCHHHhhhhhhhHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5788999999999 99999999999999999999876 589999999999999999999999999999999999988877


Q ss_pred             HHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCc-ccCccccccCCcEEEE
Q 027668           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTGEKIVGG  159 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~-~~~~~~~~~~~~~i~~  159 (220)
                      .+ +++|++.++++.+.+.+++..+++|+||||+|....++.++++++++|+++.+|...... +++...++.+++++.|
T Consensus       233 ~a-~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g  311 (369)
T 1uuf_A          233 AA-KALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAG  311 (369)
T ss_dssp             HH-HHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEE
T ss_pred             HH-HHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEE
Confidence            66 689999999988877666666799999999998767899999999999999999876544 5666677889999999


Q ss_pred             eeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeCCc
Q 027668          160 SLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      +...+.++++++++++++|.+++.+++|+++++++||+.+.+++..+|+|+.+++.
T Consensus       312 ~~~~~~~~~~~~~~l~~~g~i~~~i~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~~  367 (369)
T 1uuf_A          312 SMIGGIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVIDNRTL  367 (369)
T ss_dssp             CCSCCHHHHHHHHHHHHHHTCCCCEEEECGGGHHHHHHHHHTTCSSSEEEEEGGGG
T ss_pred             eecCCHHHHHHHHHHHHhCCCCcceEEEcHHHHHHHHHHHHcCCCceEEEEecCCC
Confidence            98888889999999999999998888899999999999999888789999998653

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=3.5e-36  Score=238.02  Aligned_cols=211  Identities=34%  Similarity=0.593  Sum_probs=190.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++++++||++++.+.|||++++.. .+++|++|||+|+|++|++++|+++.+|++|+++++++++++.
T Consensus       127 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~  205 (340)
T 3s2e_A          127 VADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVT-DTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNL  205 (340)
T ss_dssp             EECTTTSEECCTTSCHHHHGGGGTHHHHHHHHHHTT-TCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             EechHHEEECCCCCCHHHhhcccchhHHHHHHHHHc-CCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHH
Confidence            578999999999999999999999999999999655 5899999999999999999999999999999999999888776


Q ss_pred             HHHHcCCcEEecCCCHH---HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEE
Q 027668           82 AVERLGADSFLVSRDQD---EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVG  158 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~---~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~  158 (220)
                      + +++|++.++++.+.+   .+.+..+++|++||++|....++.++++++++|+++.+|...+..+++...++.+++++.
T Consensus       206 ~-~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~  284 (340)
T 3s2e_A          206 A-RRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIR  284 (340)
T ss_dssp             H-HHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCSSEEEEEHHHHHHTTCEEE
T ss_pred             H-HHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCCCCCCCCHHHHHhCCeEEE
Confidence            6 789999999887643   333433589999999998878999999999999999999877666677777888999999


Q ss_pred             EeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          159 GSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      ++...+.++++++++++++|.+++.++.++++++++||+.+.+++..||+|+++++
T Consensus       285 g~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~  340 (340)
T 3s2e_A          285 GSIVGTRSDLQESLDFAAHGDVKATVSTAKLDDVNDVFGRLREGKVEGRVVLDFSR  340 (340)
T ss_dssp             ECCSCCHHHHHHHHHHHHTTSCCCCEEEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred             EEecCCHHHHHHHHHHHHhCCCCceEEEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            99999999999999999999999988889999999999999999988999999864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=7.3e-36  Score=237.87  Aligned_cols=211  Identities=35%  Similarity=0.559  Sum_probs=188.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++++++||++++.+.|||+++.+ ..+++|++|||+|+|++|++++|+++.+|++|+++++++++++.
T Consensus       140 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~  218 (360)
T 1piw_A          140 RVHEHFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRED  218 (360)
T ss_dssp             EEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHH
T ss_pred             EEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence            57889999999999999999999999999999987 45899999999999999999999999999999999998888776


Q ss_pred             HHHHcCCcEEecCCCH-HHHHHhcCCccEEEEcCCC--cccHHHHHhccccCCEEEEecCCCCCc-ccCccccccCCcEE
Q 027668           82 AVERLGADSFLVSRDQ-DEMQAAMGTMDGIIDTVSA--VHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTGEKIV  157 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~-~~~~~~~~~~d~vid~~g~--~~~~~~~~~~l~~~g~iv~~g~~~~~~-~~~~~~~~~~~~~i  157 (220)
                      + +++|++.++++.+. +..+++.+++|+||||+|.  ...++.++++++++|+++.+|.... . .++...++.+++++
T Consensus       219 ~-~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i  296 (360)
T 1piw_A          219 A-MKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSI  296 (360)
T ss_dssp             H-HHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGCBSCEE
T ss_pred             H-HHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHhCCeEE
Confidence            6 67999999988765 5555555689999999998  5578899999999999999998765 4 56666778899999


Q ss_pred             EEeeccCHHHHHHHHHHHHhCCcceeEEEEeccc--HHHHHHHHHcCCcceEEEEEeCCc
Q 027668          158 GGSLIGGLKETQEMIDFAAKHNIRADIEVIPADY--VNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      .++..++.++++++++++++|.+++.+++|++++  +++||+.+.+++..+|+|++++++
T Consensus       297 ~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~~~  356 (360)
T 1piw_A          297 SYSALGSIKELNQLLKLVSEKDIKIWVETLPVGEAGVHEAFERMEKGDVRYRFTLVGYDK  356 (360)
T ss_dssp             EECCCCCHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHHHHTCCSSEEEEECCHH
T ss_pred             EEEecCCHHHHHHHHHHHHhCCCcceEEEEeccHhHHHHHHHHHHCCCCceEEEEecCcc
Confidence            9998888899999999999999998889999999  999999999888789999998654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=2.8e-35  Score=233.58  Aligned_cols=211  Identities=26%  Similarity=0.466  Sum_probs=189.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++|+++++.+.|||++++... +++|++|||+|+|++|.+++|+++.. |++|+++++++++++
T Consensus       124 ~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~  202 (348)
T 4eez_A          124 IVVADYAVKVPDGLDPIEASSITCAGVTTYKAIKVSG-VKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLN  202 (348)
T ss_dssp             EEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHH
T ss_pred             cccccceeecCCCCCHHHHhhcccceeeEEeeecccC-CCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhh
Confidence            5788999999999999999999999999999997665 79999999999999999999999976 569999999988775


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCc
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEK  155 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      .+ +++|++.++|+.+.   +.+.+.++  ++|.++++++...++..++++++++|+++.+|......+++...++.+++
T Consensus       203 ~~-~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  281 (348)
T 4eez_A          203 LA-KKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGV  281 (348)
T ss_dssp             HH-HHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECHHHHHHSCC
T ss_pred             hh-hhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCCceEEEEeccCCCCccCHHHHHhCCe
Confidence            55 89999999998874   45556665  79999999999888999999999999999999887777888888899999


Q ss_pred             EEEEeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          156 IVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      ++.|+..+++.+++++++++++|.+++.+++|+|+++++||+.+++++..||+|++|+.
T Consensus       282 ~i~gs~~~~~~~~~~~~~l~~~g~i~p~~~~~~l~~~~~A~~~l~~g~~~GKvVl~~sk  340 (348)
T 4eez_A          282 EVAGSLVGTRLDLAEAFQFGAEGKVKPIVATRKLEEINDIIDEMKAGKIEGRMVIDFTK  340 (348)
T ss_dssp             EEEECCSCCHHHHHHHHHHHHTTSCCCCEEEECGGGHHHHHHHHHTTCCSSEEEEECC-
T ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCEEEEEEEeHHHHHHHHHHHHCCCCccEEEEEccc
Confidence            99999999999999999999999999878999999999999999999988999999964

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=4.3e-35  Score=233.60  Aligned_cols=208  Identities=25%  Similarity=0.340  Sum_probs=186.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++++++||++++.+.|||+++.+...+++|++|||+|+|++|++++|+++.+|++|+++++++++++.
T Consensus       149 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~  228 (363)
T 3uog_A          149 VLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDR  228 (363)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             EechHHeEECCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHH
Confidence            57889999999999999999999999999999976777999999999999999999999999999999999999888776


Q ss_pred             HHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCCc
Q 027668           82 AVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGEK  155 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~~  155 (220)
                      + +++|++.+++....   +.+.+.++  ++|++|||+|.. .+..++++++++|+++.+|..... .+++...++.+++
T Consensus       229 ~-~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~  306 (363)
T 3uog_A          229 A-FALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGA-GLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSP  306 (363)
T ss_dssp             H-HHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETTSS-CHHHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHTCC
T ss_pred             H-HHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCChH-HHHHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhCCc
Confidence            5 78999999985432   45555554  899999999965 799999999999999999987653 5677777888999


Q ss_pred             EEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          156 IVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ++.|+...+.+++++++++++++.+++.+ ++|+++++++||+.+.+++ .+|+|+++
T Consensus       307 ~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~-~gKvvi~~  363 (363)
T 3uog_A          307 VVQGISVGHRRALEDLVGAVDRLGLKPVIDMRYKFTEVPEALAHLDRGP-FGKVVIEF  363 (363)
T ss_dssp             EEEECCCCCHHHHHHHHHHHHHHTCCCCEEEEEEGGGHHHHHHTGGGCC-SBEEEEEC
T ss_pred             EEEEEecCCHHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHHcCC-CccEEEeC
Confidence            99999999999999999999999999888 8999999999999999888 89999975

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=5.5e-35  Score=231.05  Aligned_cols=211  Identities=31%  Similarity=0.564  Sum_probs=187.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++++++||++++.+.|||+++++. .+++|++|||+|+|++|++++|+++.+|++|+++++++++++.
T Consensus       125 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~  203 (339)
T 1rjw_A          125 RAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVT-GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLEL  203 (339)
T ss_dssp             EEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHHHHH-TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             EechHHEEECCCCCCHHHhhhhhhhHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            578899999999999999999999999999999887 5899999999999889999999999999999999999888776


Q ss_pred             HHHHcCCcEEecCCCH---HHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEE
Q 027668           82 AVERLGADSFLVSRDQ---DEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVG  158 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~---~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~  158 (220)
                      + +++|++.++++.+.   +.+.+.++++|++||++|....++.++++++++|+++.+|......+++...++.+++++.
T Consensus       204 ~-~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~  282 (339)
T 1rjw_A          204 A-KELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKII  282 (339)
T ss_dssp             H-HHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEE
T ss_pred             H-HHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCCccCHHHHHhCCcEEE
Confidence            6 68999988887653   3444444689999999998667899999999999999999876555666666778999999


Q ss_pred             EeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          159 GSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      |+...+.++++++++++++|.+++.+++|+++++++||+.+.+++..+|+|+++++
T Consensus       283 g~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  338 (339)
T 1rjw_A          283 GSIVGTRKDLQEALQFAAEGKVKTIIEVQPLEKINEVFDRMLKGQINGRVVLTLED  338 (339)
T ss_dssp             ECCSCCHHHHHHHHHHHHTTSCCCCEEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             EeccCCHHHHHHHHHHHHcCCCCccEEEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            99888889999999999999999878999999999999999988878999999854

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.1e-35  Score=232.86  Aligned_cols=207  Identities=28%  Similarity=0.454  Sum_probs=183.6

Q ss_pred             cccCcceeeCCCCCCccccc---ccchhhhhhhhhhHhc-cCCCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCc
Q 027668            2 VADEHFVVRIPEGAPLDATA---PLLCAGITVYSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSP   76 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa---~~~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~   76 (220)
                      ++|++.++++|+++++++||   ++++++.|||+++.+. ..+++|++|||+|+|++|++++|+++.+ |++|+++++++
T Consensus       142 ~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~  221 (359)
T 1h2b_A          142 RTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE  221 (359)
T ss_dssp             EECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             EechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence            57889999999999999999   8999999999999885 5689999999999999999999999999 99999999998


Q ss_pred             ccHHHHHHHcCCcEEecCCCH--HHHHHhcC--CccEEEEcCCCcc--cHHHHHhccccCCEEEEecCCCCCcccCcccc
Q 027668           77 SKKSEAVERLGADSFLVSRDQ--DEMQAAMG--TMDGIIDTVSAVH--PLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL  150 (220)
Q Consensus        77 ~~~~~~~~~~g~~~v~~~~~~--~~~~~~~~--~~d~vid~~g~~~--~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~  150 (220)
                      ++++.+ +++|+++++++.+.  +.++++++  ++|++|||+|...  .+..++++  ++|+++.+|..... +++...+
T Consensus       222 ~~~~~~-~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~-~~~~~~~  297 (359)
T 1h2b_A          222 EKLKLA-ERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGEL-RFPTIRV  297 (359)
T ss_dssp             HHHHHH-HHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSCC-CCCHHHH
T ss_pred             HHHHHH-HHhCCCEEEeccchHHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCCC-CCCHHHH
Confidence            887766 78999999998765  55556664  7999999999975  67888887  99999999987655 6666677


Q ss_pred             ccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          151 LTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       151 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +.+++++.|+...+.++++++++++++|.+++.+++|+++++++||+.+.+++..+|+|+++
T Consensus       298 ~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~l~~~~~A~~~~~~~~~~gKvvv~~  359 (359)
T 1h2b_A          298 ISSEVSFEGSLVGNYVELHELVTLALQGKVRVEVDIHKLDEINDVLERLEKGEVLGRAVLIP  359 (359)
T ss_dssp             HHTTCEEEECCSCCHHHHHHHHHHHHTTSCCCCEEEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             HhCCcEEEEecCCCHHHHHHHHHHHHcCCCcceEEEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence            88999999998888899999999999999998779999999999999999888789999874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=1.4e-34  Score=229.26  Aligned_cols=208  Identities=24%  Similarity=0.319  Sum_probs=185.2

Q ss_pred             ccc-CcceeeCCCCCCcccccccchhhhhhhhhhHh-ccCCCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCccc
Q 027668            2 VAD-EHFVVRIPEGAPLDATAPLLCAGITVYSPLRF-YGLDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSK   78 (220)
Q Consensus         2 ~~~-~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~   78 (220)
                      ++| ++.++++|+ +++++||++++.+.|||+++.+ ...+++|++|||+|+|++|++++|+++.+ |++|++++.++++
T Consensus       130 ~v~~~~~~~~~p~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~  208 (345)
T 3jv7_A          130 IVDSARHLVPIGD-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDR  208 (345)
T ss_dssp             EESCGGGEEECTT-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHH
T ss_pred             EecchhceEeCCC-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            456 899999999 9999999999999999999988 44689999999999999999999999999 5699999999888


Q ss_pred             HHHHHHHcCCcEEecCCC--HHHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccC
Q 027668           79 KSEAVERLGADSFLVSRD--QDEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTG  153 (220)
Q Consensus        79 ~~~~~~~~g~~~v~~~~~--~~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~  153 (220)
                      ++.+ +++|++.++++.+  .+.+++.++  ++|+||||+|....++.++++++++|+++.+|.... ..+++. .++.+
T Consensus       209 ~~~~-~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~  286 (345)
T 3jv7_A          209 LALA-REVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPF  286 (345)
T ss_dssp             HHHH-HHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST-TTSCT
T ss_pred             HHHH-HHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhC
Confidence            7666 7899999998765  245555554  899999999998678999999999999999998765 556664 77889


Q ss_pred             CcEEEEeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          154 EKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ++++.++...+.++++++++++++|.+++.+++|+++++++||+.+.+++..||+|+.+
T Consensus       287 ~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          287 GASVVTPYWGTRSELMEVVALARAGRLDIHTETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             TCEEECCCSCCHHHHHHHHHHHHTTCCCCCEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             CCEEEEEecCCHHHHHHHHHHHHcCCCceEEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence            99999999999999999999999999998779999999999999999999999999864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=1.1e-34  Score=229.80  Aligned_cols=208  Identities=26%  Similarity=0.324  Sum_probs=169.8

Q ss_pred             ccc-CcceeeCCCCCCcccccccchhhhhhhhhhHhc----cCCCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeC
Q 027668            2 VAD-EHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY----GLDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVIST   74 (220)
Q Consensus         2 ~~~-~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~----~~~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~   74 (220)
                      ++| ++.++++ +++++++||++++++.|||+++...    ..+ +|++|||+|+|++|++++|+++.+  |++|+++++
T Consensus       127 ~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~  204 (344)
T 2h6e_A          127 LVKSSRWLVKL-NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISR  204 (344)
T ss_dssp             EESCGGGEEEE-SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECS
T ss_pred             EecCcccEEEe-CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeC
Confidence            567 8999999 9999999999999999999999877    258 999999999999999999999999  999999999


Q ss_pred             CcccHHHHHHHcCCcEEecCCC-HHHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccc
Q 027668           75 SPSKKSEAVERLGADSFLVSRD-QDEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~  151 (220)
                      ++++++.+ +++|++.++++.+ .+.++++++  ++|+||||+|....++.++++++++|+++.+|......+++...++
T Consensus       205 ~~~~~~~~-~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~  283 (344)
T 2h6e_A          205 SKKHRDFA-LELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTA  283 (344)
T ss_dssp             CHHHHHHH-HHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHH
T ss_pred             CHHHHHHH-HHhCCCEEeccccchHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCCCcccCHHHHh
Confidence            88887666 7899999998766 555666653  7999999999976789999999999999999987655667777778


Q ss_pred             cCCcEEEEeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          152 TGEKIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .+++++.++...+.++++++++++++|.+++.+++|+++++++||+.+.+++..+|+|+++
T Consensus       284 ~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~i~~~~l~~~~~A~~~~~~~~~~gKvvl~~  344 (344)
T 2h6e_A          284 VWNKKLLGSNYGSLNDLEDVVRLSESGKIKPYIIKVPLDDINKAFTNLDEGRVDGRQVITP  344 (344)
T ss_dssp             HTTCEEEECCSCCHHHHHHHHHHHHTTSSCCCEEEECC----------------CEEEECC
T ss_pred             hCCcEEEEEecCCHHHHHHHHHHHHcCCCCcceEEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence            8999999998888899999999999999988779999999999999998888778999864

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=1.7e-33  Score=225.47  Aligned_cols=208  Identities=20%  Similarity=0.330  Sum_probs=177.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++++.|||+++.+...+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++
T Consensus       155 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  234 (376)
T 1e3i_A          155 VVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFP  234 (376)
T ss_dssp             EEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             EeccccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            578899999999999999999999999999998766678999999999999999999999999999 8999998888876


Q ss_pred             HHHHHcCCcEEecCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCCCcccCccccccC
Q 027668           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKPLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-----~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~~~~~~~~~~~~~  153 (220)
                      .+ +++|++.++++.+     .+.+++.++ ++|+||||+|....++.++++++++ |+++.+|......+++...++.+
T Consensus       235 ~a-~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~  313 (376)
T 1e3i_A          235 KA-KALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILG  313 (376)
T ss_dssp             HH-HHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHTT
T ss_pred             HH-HHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCCccccCHHHhhcc
Confidence            66 7899999988763     234555554 8999999999866789999999999 99999998544455666667778


Q ss_pred             CcEEEEeecc---CHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          154 EKIVGGSLIG---GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      + ++.|+...   ..++++++++++++|.+++  .+ ++|+++++++||+.+.+++. +|+++++
T Consensus       314 ~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~~  376 (376)
T 1e3i_A          314 R-SINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKS-IRTILTF  376 (376)
T ss_dssp             C-EEEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             C-eEEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCc-ceEEEeC
Confidence            8 99998653   3577999999999999874  45 89999999999999988774 6999874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=1.3e-33  Score=226.21  Aligned_cols=210  Identities=22%  Similarity=0.348  Sum_probs=179.8

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++++.|||+++.+...+++|++|||+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       153 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~  232 (378)
T 3uko_A          153 VVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYE  232 (378)
T ss_dssp             EEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHH
T ss_pred             EechhheEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            578899999999999999999999999999998777779999999999999999999999999999 8999998888876


Q ss_pred             HHHHHcCCcEEecCC--C---HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCCC--cccCccccc
Q 027668           81 EAVERLGADSFLVSR--D---QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKP--LELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~--~---~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~~--~~~~~~~~~  151 (220)
                      .+ +++|++.++++.  +   .+.+++.++ ++|+||||+|.+..++.++++++++ |+++.+|.....  .+++...++
T Consensus       233 ~a-~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~  311 (378)
T 3uko_A          233 TA-KKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV  311 (378)
T ss_dssp             HH-HTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHH
T ss_pred             HH-HHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHh
Confidence            55 899999999876  2   245556654 8999999999977789999999996 999999986533  444555544


Q ss_pred             cCCcEEEEeecc---CHHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          152 TGEKIVGGSLIG---GLKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       152 ~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      . +.++.|+...   ..++++++++++++|.+++.  + ++|+++++++||+.+.+++.. |+|+++++
T Consensus       312 ~-~~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~-Kvvi~~~~  378 (378)
T 3uko_A          312 T-GRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCL-RCVLDTSK  378 (378)
T ss_dssp             T-TCEEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCS-EEEEETTC
T ss_pred             c-CcEEEEEEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCce-EEEEecCC
Confidence            4 8899998654   46789999999999998853  5 899999999999999888765 99999864

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=1.2e-33  Score=224.48  Aligned_cols=209  Identities=23%  Similarity=0.260  Sum_probs=182.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEc-CchHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++.+.|||+++.+...+++|++|||+| +|++|++++|+++..|++|+++++++++++
T Consensus       127 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  206 (353)
T 4dup_A          127 LLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCE  206 (353)
T ss_dssp             EEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             EEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            5789999999999999999999999999999997777799999999996 499999999999999999999999998877


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cc-cCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LE-LPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~-~~~~~~~~~~  154 (220)
                      .+ +++|++.++++.+.+   .+.+.++ ++|++|||+|.. .+..++++++++|+++.+|..... .. ++...++.++
T Consensus       207 ~~-~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~  284 (353)
T 4dup_A          207 AC-ERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA-YFERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKR  284 (353)
T ss_dssp             HH-HHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG-GHHHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHHTT
T ss_pred             HH-HhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH-HHHHHHHHhccCCEEEEEEecCCCcccCCCHHHHHhcC
Confidence            66 689999999877643   3444444 899999999987 689999999999999999987653 23 6667788899


Q ss_pred             cEEEEeeccCHHH----------HHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          155 KIVGGSLIGGLKE----------TQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~i~~~~~~~~~~----------~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +++.|+......+          ++++++++++|.+++.+ ++|+++++++||+.+.+++..+|+|+++
T Consensus       285 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          285 LTVTGSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             CEEEECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             ceEEEEeccccchhhhHHHHHHHHHHHHHHHHCCCccCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9999998755432          78899999999999888 8999999999999999999889999874

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=2.2e-33  Score=222.44  Aligned_cols=212  Identities=18%  Similarity=0.235  Sum_probs=179.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCC------CCCEEEEEc-CchHHHHHHHHHHHCCCeEEEEeC
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK------PGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVIST   74 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~------~~~~vlI~G-~g~~G~~~~~~~~~~g~~v~~~~~   74 (220)
                      ++|++.++++|+++++++||++++++.|||+++.....++      +|++|||+| +|++|++++|+++..|++|+++++
T Consensus       104 ~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~  183 (346)
T 3fbg_A          104 LINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGLRVITTAS  183 (346)
T ss_dssp             EEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             EEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeC
Confidence            5788999999999999999999999999999997777788      999999996 599999999999999999999999


Q ss_pred             CcccHHHHHHHcCCcEEecCCCH--HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccc
Q 027668           75 SPSKKSEAVERLGADSFLVSRDQ--DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~  151 (220)
                      ++++++.+ +++|++.++++.+.  +.+++..+ ++|++|||+|....++.++++++++|+++.++...  .+++...+.
T Consensus       184 ~~~~~~~~-~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~~--~~~~~~~~~  260 (346)
T 3fbg_A          184 RNETIEWT-KKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFE--NDQDLNALK  260 (346)
T ss_dssp             SHHHHHHH-HHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSCCS--SCBCGGGGT
T ss_pred             CHHHHHHH-HhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEECCCC--CCCcccccc
Confidence            88887666 68999999988752  34445533 89999999998766789999999999999987533  345566677


Q ss_pred             cCCcEEEEeeccC------------HHHHHHHHHHHHhCCcceeE-EEE---ecccHHHHHHHHHcCCcceEEEEEeCCc
Q 027668          152 TGEKIVGGSLIGG------------LKETQEMIDFAAKHNIRADI-EVI---PADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       152 ~~~~~i~~~~~~~------------~~~~~~~~~~~~~~~~~~~i-~~~---~~~~i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      .+++++.++..+.            .+.++++++++++|.+++.+ ++|   +++++++||+.+.+++..||+|++++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~~  340 (346)
T 3fbg_A          261 PKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNEG  340 (346)
T ss_dssp             TTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSCCCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC---
T ss_pred             ccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEECCccceecCCCHHHHHHHHHHHhcCCcceEEEEecCCc
Confidence            8999999876543            24578899999999999887 777   8999999999999999999999999776


Q ss_pred             c
Q 027668          216 M  216 (220)
Q Consensus       216 ~  216 (220)
                      .
T Consensus       341 ~  341 (346)
T 3fbg_A          341 H  341 (346)
T ss_dssp             -
T ss_pred             c
Confidence            3

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=1.1e-33  Score=231.73  Aligned_cols=212  Identities=18%  Similarity=0.190  Sum_probs=187.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhc--cCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~   78 (220)
                      ++|++.++++|+++++++||++++.+.|||+++...  ..+++|++|||+|+ |++|++++|+++.+|++|+++++++++
T Consensus       186 ~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~  265 (456)
T 3krt_A          186 LVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQK  265 (456)
T ss_dssp             EEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             EechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            578899999999999999999999999999998654  56899999999998 999999999999999999999988887


Q ss_pred             HHHHHHHcCCcEEecCCCH--------------------HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668           79 KSEAVERLGADSFLVSRDQ--------------------DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus        79 ~~~~~~~~g~~~v~~~~~~--------------------~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      ++.+ +++|++.++++.+.                    +.+++.++  ++|+||||+|.. .+..++++++++|+++.+
T Consensus       266 ~~~~-~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~-~~~~~~~~l~~~G~iv~~  343 (456)
T 3krt_A          266 AEIC-RAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRE-TFGASVFVTRKGGTITTC  343 (456)
T ss_dssp             HHHH-HHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHH-HHHHHHHHEEEEEEEEES
T ss_pred             HHHH-HhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCch-hHHHHHHHhhCCcEEEEE
Confidence            7666 78999999987653                    45556554  899999999984 799999999999999999


Q ss_pred             cCCCCC-cccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          137 GAPEKP-LELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       137 g~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      |...+. .+++...++.++.++.|+...+..++.++++++++|.+++.+ ++|+++++++||+.+.+++..+|+++.+..
T Consensus       344 G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~eA~~~l~~~~~~GKvvv~~~~  423 (456)
T 3krt_A          344 ASTSGYMHEYDNRYLWMSLKRIIGSHFANYREAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVLCLA  423 (456)
T ss_dssp             CCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEESSC
T ss_pred             ecCCCcccccCHHHHHhcCeEEEEeccCCHHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence            987643 456666778899999999998988899999999999999888 899999999999999999989999998855


Q ss_pred             c
Q 027668          215 T  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       424 ~  424 (456)
T 3krt_A          424 P  424 (456)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=6.3e-33  Score=222.01  Aligned_cols=208  Identities=23%  Similarity=0.348  Sum_probs=177.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++++.|||+++.+...+++|++|||+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       152 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~  231 (374)
T 1cdo_A          152 VVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFE  231 (374)
T ss_dssp             EEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             EEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence            578899999999999999999999999999998766678999999999999999999999999999 8999998888877


Q ss_pred             HHHHHcCCcEEecCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCC-CcccCcccccc
Q 027668           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK-PLELPAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-----~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~-~~~~~~~~~~~  152 (220)
                      .+ +++|++.++++.+     .+.+++.++ ++|++|||+|....++.++++++++ |+++.+|.... ..+++...++.
T Consensus       232 ~~-~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~  310 (374)
T 1cdo_A          232 KA-KVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIA  310 (374)
T ss_dssp             HH-HHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHT
T ss_pred             HH-HHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhc
Confidence            66 7899999988763     234455544 8999999999866789999999999 99999998654 44566666677


Q ss_pred             CCcEEEEeecc---CHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          153 GEKIVGGSLIG---GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       153 ~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ++ ++.|+...   ..++++++++++++|.+++  .+ ++|+++++++||+.+.+++. +|+++++
T Consensus       311 ~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  374 (374)
T 1cdo_A          311 GR-TWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKC-IRTVLSL  374 (374)
T ss_dssp             TC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             CC-eEEEEecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCe-eEEEEeC
Confidence            88 99998654   3577999999999999874  45 89999999999999988775 6999875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=3.9e-33  Score=220.63  Aligned_cols=208  Identities=21%  Similarity=0.305  Sum_probs=174.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++.+.|||+++.+...+++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       119 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  198 (342)
T 4eye_A          119 AVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE  198 (342)
T ss_dssp             EECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             EEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            57889999999999999999999999999999977777999999999998 99999999999999999999999988876


Q ss_pred             HHHHHcCCcEEecCCC--HHHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCCc
Q 027668           81 EAVERLGADSFLVSRD--QDEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGEK  155 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~--~~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~~  155 (220)
                      .+ +++|++.++++.+  .+.+.+.++  ++|++|||+|.. .+..++++++++|+++.+|...+. ..++...++.+++
T Consensus       199 ~~-~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~  276 (342)
T 4eye_A          199 FV-KSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP-AFDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNA  276 (342)
T ss_dssp             HH-HHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC---CHHHHHHTEEEEEEEEEC----------CCCCGGGTTC
T ss_pred             HH-HhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh-HHHHHHHhhcCCCEEEEEEccCCCCCccCHHHHhhcCC
Confidence            66 7899999988773  234455554  799999999997 689999999999999999976643 4566667888999


Q ss_pred             EEEEeeccCH---------HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          156 IVGGSLIGGL---------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ++.|+.....         +.++.+++++++| +++.+ ++|+++++++||+.+.+++..||+|+++
T Consensus       277 ~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g-l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          277 SLIGVAWGEFLRTHADYLYETQAGLEKLVAEG-MRPPVSARIPLSEGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             EEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT-CCCCEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             EEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC-CCCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9999875332         4588999999999 88888 8999999999999999999889999874

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-33  Score=225.43  Aligned_cols=208  Identities=22%  Similarity=0.318  Sum_probs=181.2

Q ss_pred             cc-cCcceeeCCCCCCcc-cccccchhhhhhhhhhHhccC-CCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcc
Q 027668            2 VA-DEHFVVRIPEGAPLD-ATAPLLCAGITVYSPLRFYGL-DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS   77 (220)
Q Consensus         2 ~~-~~~~~~~~p~~~~~~-~aa~~~~~~~ta~~~l~~~~~-~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~   77 (220)
                      ++ |++.++++|++++++ +|+.+. .+.|||++++. .. +++|++|||+|+|++|++++|+|+.+|+ +|++++++++
T Consensus       154 ~v~~~~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al~~-~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~  231 (380)
T 1vj0_A          154 VLDPETDVLKVSEKDDLDVLAMAMC-SGATAYHAFDE-YPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPN  231 (380)
T ss_dssp             EECTTCCEEEECTTSCHHHHHHHTT-HHHHHHHHHHT-CSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred             EEcccceEEECCCCCChHHhHhhhc-HHHHHHHHHHh-cCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHH
Confidence            46 899999999999999 666555 99999999965 46 8999999999999999999999999995 9999999988


Q ss_pred             cHHHHHHHcCCcEEecCC---CHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCC-C-CcccCc
Q 027668           78 KKSEAVERLGADSFLVSR---DQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-K-PLELPA  147 (220)
Q Consensus        78 ~~~~~~~~~g~~~v~~~~---~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~-~-~~~~~~  147 (220)
                      +++.+ +++|++.++++.   +.+   .+++.++  ++|+||||+|....+..++++++++|+++.+|... . ..+++.
T Consensus       232 ~~~~~-~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~  310 (380)
T 1vj0_A          232 RLKLA-EEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKV  310 (380)
T ss_dssp             HHHHH-HHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECH
T ss_pred             HHHHH-HHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEch
Confidence            87766 689999999877   433   4445554  79999999998767899999999999999999876 4 556776


Q ss_pred             cc-cccCCcEEEEeeccCHHHHHHHHHHHHh--CCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          148 FP-LLTGEKIVGGSLIGGLKETQEMIDFAAK--HNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       148 ~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      .. ++.+++++.|+...+.++++++++++++  |.+++.+ ++|+++++++||+.+.+++.. |+|++++
T Consensus       311 ~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~-Kvvl~~~  379 (380)
T 1vj0_A          311 YEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELMESREAL-KVILYPE  379 (380)
T ss_dssp             HHHTTTTTCEEEECCCCCHHHHHHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHHHTSCS-CEEEECC
T ss_pred             HHHHHhCCeEEEEeecCCHHHHHHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHhcCCCc-eEEEEeC
Confidence            67 7889999999988888999999999999  9998777 899999999999999988877 9999875

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.4e-33  Score=222.21  Aligned_cols=209  Identities=21%  Similarity=0.253  Sum_probs=179.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++++.|||+++.+...+++|++|||+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       150 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~  229 (371)
T 1f8f_A          150 LSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLE  229 (371)
T ss_dssp             EEEGGGEEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHH
T ss_pred             EechhheEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            578889999999999999999999999999999666678999999999999999999999999999 6999998888776


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~~~~~~  154 (220)
                      .+ +++|++.++++.+.   +.+++.++ ++|+||||+|....++.++++++++|+++.+|....  ..+++...++.++
T Consensus       230 ~a-~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~  308 (371)
T 1f8f_A          230 LA-KQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGG  308 (371)
T ss_dssp             HH-HHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTT
T ss_pred             HH-HHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCC
Confidence            66 78999999987653   34555554 799999999986678999999999999999998653  3466666778899


Q ss_pred             cEEEEeeccC---HHHHHHHHHHHHhCCccee--E-EEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          155 KIVGGSLIGG---LKETQEMIDFAAKHNIRAD--I-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       155 ~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~--i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      +++.++....   .++++++++++++|.+++.  + + |+++++++||+.+.+++. +|+|+++.
T Consensus       309 ~~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~-~Kvvv~~~  371 (371)
T 1f8f_A          309 KTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGIT-LKPIIKIA  371 (371)
T ss_dssp             CEEEECSGGGSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSC-SEEEEECC
T ss_pred             CEEEEeCCCCCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCc-eEEEEeeC
Confidence            9999987542   4679999999999999863  5 6 999999999999988775 69999863

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=1.1e-32  Score=220.52  Aligned_cols=208  Identities=21%  Similarity=0.346  Sum_probs=177.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++++.|||+++.+...+++|++|||+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       151 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~  230 (374)
T 2jhf_A          151 VVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFA  230 (374)
T ss_dssp             EEEGGGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH
T ss_pred             EEchHHeEECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            578899999999999999999999999999998766778999999999999999999999999999 8999998888876


Q ss_pred             HHHHHcCCcEEecCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCC--CcccCccccc
Q 027668           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-----~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|++.++++.+     .+.+++.++ ++|+||||+|....+..++++++++ |+++.+|....  ..+++...++
T Consensus       231 ~~-~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~  309 (374)
T 2jhf_A          231 KA-KEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLL  309 (374)
T ss_dssp             HH-HHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHH
T ss_pred             HH-HHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHh
Confidence            66 7899999988753     234555554 8999999999866789999999999 99999997653  3456666667


Q ss_pred             cCCcEEEEeecc---CHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          152 TGEKIVGGSLIG---GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .++ ++.|+...   ..++++++++++++|.+++  .+ ++|+++++++||+.+.+++. .|+++++
T Consensus       310 ~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~Kvvi~~  374 (374)
T 2jhf_A          310 SGR-TWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGES-IRTILTF  374 (374)
T ss_dssp             TTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCC-SEEEEEC
T ss_pred             cCC-eEEEeccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            788 99998653   2578999999999999874  45 89999999999999988774 6999874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=7e-33  Score=221.71  Aligned_cols=208  Identities=22%  Similarity=0.324  Sum_probs=177.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++++.|||+++.+...+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++
T Consensus       150 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~  229 (373)
T 2fzw_A          150 VVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFA  229 (373)
T ss_dssp             EEEGGGEEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred             EEchhheEECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence            578899999999999999999999999999998766678999999999999999999999999999 8999998888876


Q ss_pred             HHHHHcCCcEEecCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCC--CcccCccccc
Q 027668           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-----~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|++.++++.+     .+.+++.++ ++|+||||+|....+..++++++++ |+++.+|....  ..+++...++
T Consensus       230 ~~-~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~  308 (373)
T 2fzw_A          230 RA-KEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLV  308 (373)
T ss_dssp             HH-HHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHH
T ss_pred             HH-HHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHh
Confidence            66 7899999988753     234555554 8999999999866789999999999 99999997653  3456666666


Q ss_pred             cCCcEEEEeecc---CHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          152 TGEKIVGGSLIG---GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .++ ++.|+...   ..++++++++++++|.+++  .+ ++|+++++++||+.+.+++. .|+++++
T Consensus       309 ~~~-~i~g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 2fzw_A          309 TGR-TWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKS-IRTVVKI  373 (373)
T ss_dssp             TTC-EEEECSGGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCC-SEEEEEC
T ss_pred             cCC-EEEEeccCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCc-ceEEEeC
Confidence            778 99998654   3577999999999999874  45 89999999999999988775 6999874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=4e-33  Score=221.76  Aligned_cols=209  Identities=21%  Similarity=0.250  Sum_probs=177.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||.+ ..+.|||++++.. .+++|++|||+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       133 ~v~~~~~~~iP~~l~~~~aa~~-~~~~ta~~al~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  210 (356)
T 1pl8_A          133 KHNAAFCYKLPDNVTFEEGALI-EPLSVGIHACRRG-GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLS  210 (356)
T ss_dssp             EEEGGGEEECCTTSCHHHHHHH-HHHHHHHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             EeehHHEEECcCCCCHHHHHhh-chHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            5788999999999999999865 5778999999654 58999999999999999999999999999 8999999888776


Q ss_pred             HHHHHcCCcEEecCC---CHH---HHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccC
Q 027668           81 EAVERLGADSFLVSR---DQD---EMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~---~~~---~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~  153 (220)
                      .+ +++|++.++++.   +.+   .+.+.+ +++|+||||+|....++.++++++++|+++.+|......+++...++.+
T Consensus       211 ~a-~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  289 (356)
T 1pl8_A          211 KA-KEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIR  289 (356)
T ss_dssp             HH-HHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHT
T ss_pred             HH-HHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHhc
Confidence            66 789999999877   233   333444 3899999999987678899999999999999998654556676777889


Q ss_pred             CcEEEEeeccCHHHHHHHHHHHHhCCcc--eeE-EEEecccHHHHHHHHHcCCcceEEEEEeCCc
Q 027668          154 EKIVGGSLIGGLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      ++++.|+..+ ..+++++++++++|.++  +.+ ++|+++++++||+.+.++ ..+|+|++++++
T Consensus       290 ~~~i~g~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~-~~gKvvi~~~~~  352 (356)
T 1pl8_A          290 EVDIKGVFRY-CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKG-LGLKIMLKCDPS  352 (356)
T ss_dssp             TCEEEECCSC-SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTT-CCSEEEEECCTT
T ss_pred             ceEEEEeccc-HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCC-CceEEEEeCCCC
Confidence            9999998765 46799999999999875  456 899999999999999888 678999999655

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=5.1e-33  Score=220.16  Aligned_cols=209  Identities=20%  Similarity=0.252  Sum_probs=183.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||+++..+.|||+++.+...+++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       126 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~  205 (343)
T 2eih_A          126 VLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLR  205 (343)
T ss_dssp             EEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             EeChHHeEECCCCCCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            57889999999999999999999999999999988667899999999998 99999999999999999999999988877


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCC
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      .+ +++|++.+++..+.   +.+.+.++  ++|++||++| ...++.++++++++|+++.+|..... .+++...++.++
T Consensus       206 ~~-~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  283 (343)
T 2eih_A          206 RA-KALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTG-ALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQ  283 (343)
T ss_dssp             HH-HHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSC-SSSHHHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTT
T ss_pred             HH-HhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-HHHHHHHHHhhccCCEEEEEecCCCCcCccCHHHHHhCC
Confidence            66 67999888887654   34445443  7999999999 45799999999999999999987543 346666677899


Q ss_pred             cEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          155 KIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +++.|+.....++++++++++++|.+++.+ ++|+++++++||+.+.+++..+|+|+++
T Consensus       284 ~~~~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (343)
T 2eih_A          284 LSILGSTMASKSRLFPILRFVEEGKLKPVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV  342 (343)
T ss_dssp             CEEEECCSCCGGGHHHHHHHHHHTSSCCCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred             cEEEEecCccHHHHHHHHHHHHcCCCCCceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence            999998877788899999999999999888 8999999999999999888789999976

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=1.4e-32  Score=219.94  Aligned_cols=207  Identities=26%  Similarity=0.344  Sum_probs=175.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|++++++ ||++++++.|||+++.+...+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++
T Consensus       152 ~v~~~~~~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  230 (373)
T 1p0f_A          152 VVADIAVAKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFP  230 (373)
T ss_dssp             EEETTSEEEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH
T ss_pred             EEchhhEEECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHH
Confidence            57889999999999999 999999999999998766778999999999999999999999999999 8999998888876


Q ss_pred             HHHHHcCCcEEecCCC-----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCC--CcccCccccc
Q 027668           81 EAVERLGADSFLVSRD-----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-----~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|++.++++.+     .+.+++.++ ++|+||||+|....+..++++++++ |+++.+|....  ..+++...++
T Consensus       231 ~a-~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~  309 (373)
T 1p0f_A          231 KA-IELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLL  309 (373)
T ss_dssp             HH-HHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHH
T ss_pred             HH-HHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhc
Confidence            66 7899999988763     234555554 8999999999866789999999999 99999997653  3455666666


Q ss_pred             cCCcEEEEeecc--CHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          152 TGEKIVGGSLIG--GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .++ ++.|+...  ..++++++++++++|.+++  .+ ++|+++++++||+.+.+++. +|+++++
T Consensus       310 ~~~-~i~g~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvi~~  373 (373)
T 1p0f_A          310 TGR-SLKGSVFGGFKGEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQG-VRSIMIY  373 (373)
T ss_dssp             TTC-EEEECSGGGCCGGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSC-SEEEEEC
T ss_pred             cCc-eEEeeccCCcCHHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCc-ceEEEeC
Confidence            777 99998653  3468999999999999874  45 89999999999999987764 6999874

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=6.4e-33  Score=220.28  Aligned_cols=210  Identities=17%  Similarity=0.223  Sum_probs=176.0

Q ss_pred             cccCc--ceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCccc
Q 027668            2 VADEH--FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSK   78 (220)
Q Consensus         2 ~~~~~--~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~   78 (220)
                      ++|++  .++++|+++++++||+++..+.|||++++.. .+++|++|||+|+|++|++++|+++.+|+ +|+++++++++
T Consensus       125 ~v~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~al~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~  203 (352)
T 3fpc_A          125 HVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELA-NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHC  203 (352)
T ss_dssp             EESSHHHHCEECCTTSCHHHHTTTTTHHHHHHHHHHHT-TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHH
T ss_pred             EeccccCeEEECCCCCCHHHHhhccchhHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHH
Confidence            35654  8999999999999999999999999999654 58999999999999999999999999999 89999888877


Q ss_pred             HHHHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccc----
Q 027668           79 KSEAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP----  149 (220)
Q Consensus        79 ~~~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~----  149 (220)
                      ++.+ +++|++.++++.+.   +.+.+.++  ++|+||||+|.+..++.++++++++|+++.+|.......++...    
T Consensus       204 ~~~~-~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~  282 (352)
T 3fpc_A          204 CDIA-LEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWG  282 (352)
T ss_dssp             HHHH-HHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTG
T ss_pred             HHHH-HHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCceecchhHhh
Confidence            6655 78999999987654   45555654  79999999999767999999999999999999875433332222    


Q ss_pred             cccCCcEEEEeecc-CHHHHHHHHHHHHhCCccee--E-EEEe-cccHHHHHHHHHcCCcc-eEEEEEeC
Q 027668          150 LLTGEKIVGGSLIG-GLKETQEMIDFAAKHNIRAD--I-EVIP-ADYVNTAMERLAKADVR-YRFVIDVA  213 (220)
Q Consensus       150 ~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~--i-~~~~-~~~i~~a~~~~~~~~~~-~k~v~~~~  213 (220)
                      ...++.++.++... +..+++++++++++|.+++.  + ++|+ ++++++||+.+.+++.. +|+|++++
T Consensus       283 ~~~~~~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~  352 (352)
T 3fpc_A          283 VGMGHKHIHGGLCPGGRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA  352 (352)
T ss_dssp             GGTBCEEEEEBCCCCHHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred             hhccccEEEEeeccCchhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence            23578999998764 36789999999999999875  5 8999 99999999999886654 89999874

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=7.4e-33  Score=218.68  Aligned_cols=211  Identities=20%  Similarity=0.250  Sum_probs=182.3

Q ss_pred             CcccCcceeeCCCCCCcccc--cccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668            1 MVADEHFVVRIPEGAPLDAT--APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         1 ~~~~~~~~~~~p~~~~~~~a--a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      +++|++.++++|+++++.++  +++++.+.|||+++.+...+++|++|||+|+ |++|++++|+++..|++|++++++++
T Consensus       106 ~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~  185 (336)
T 4b7c_A          106 FIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAE  185 (336)
T ss_dssp             EEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             EEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            36789999999999987776  7899999999999977777999999999998 99999999999999999999999998


Q ss_pred             cHHHHHHHcCCcEEecCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC----C---cccC
Q 027668           78 KKSEAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK----P---LELP  146 (220)
Q Consensus        78 ~~~~~~~~~g~~~v~~~~~~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~----~---~~~~  146 (220)
                      +++.+.+++|++.++++.+.+   .+.+.++ ++|++|||+|.. .+..++++++++|+++.+|....    .   ..++
T Consensus       186 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~  264 (336)
T 4b7c_A          186 KCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGGE-ILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPAN  264 (336)
T ss_dssp             HHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEECCCGGGGC------CCTT
T ss_pred             HHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCcc-hHHHHHHHHhhCCEEEEEeecccccCCcccccchh
Confidence            887776889999998877643   4444444 899999999985 68999999999999999997652    1   3455


Q ss_pred             ccccccCCcEEEEeeccCH-----HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          147 AFPLLTGEKIVGGSLIGGL-----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       147 ~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ...++.+++++.++..+..     +.++++++++++|.+++.+ .+++++++++||+.+.+++..+|+|+++
T Consensus       265 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          265 YLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             TTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccceeeecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            5667889999999987653     6789999999999999987 6799999999999999998889999974

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.1e-32  Score=219.05  Aligned_cols=209  Identities=20%  Similarity=0.206  Sum_probs=177.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++++++||.+ ..+.|||++++.. .+++|++|||+|+|++|++++|+++.+|++|+++++++++++.
T Consensus       130 ~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~al~~~-~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~  207 (352)
T 1e3j_A          130 VHAADFCHKLPDNVSLEEGALL-EPLSVGVHACRRA-GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEV  207 (352)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTH-HHHHHHHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             EeChHHeEECcCCCCHHHHHhh-chHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHH
Confidence            5788999999999999999865 5778999999554 5899999999999999999999999999999999988887766


Q ss_pred             HHHHcCCcEEecCCC-H---HHHHHhc-----CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCcccccc
Q 027668           82 AVERLGADSFLVSRD-Q---DEMQAAM-----GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLT  152 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~-~---~~~~~~~-----~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~  152 (220)
                      + +++|++.++++.+ .   +.+.+.+     +++|++|||+|....++.++++++++|+++.+|......+++...++.
T Consensus       208 ~-~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  286 (352)
T 1e3j_A          208 A-KNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACA  286 (352)
T ss_dssp             H-HHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHT
T ss_pred             H-HHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccccHHHHHh
Confidence            6 7899999988763 2   3444443     379999999998766889999999999999999865445666677788


Q ss_pred             CCcEEEEeeccCHHHHHHHHHHHHhCCcc--eeE-EEEecccHHHHHHHHHcCC-cceEEEEEeCC
Q 027668          153 GEKIVGGSLIGGLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKAD-VRYRFVIDVAN  214 (220)
Q Consensus       153 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~i-~~~~~~~i~~a~~~~~~~~-~~~k~v~~~~~  214 (220)
                      +++++.++..+ ..+++++++++++|.++  +.+ ++|+++++++||+.+.+++ ..+|+|+++++
T Consensus       287 ~~~~i~g~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  351 (352)
T 1e3j_A          287 REIDIKSVFRY-CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ  351 (352)
T ss_dssp             TTCEEEECCSC-SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECCC
T ss_pred             cCcEEEEeccc-hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence            99999998765 46799999999999875  455 8999999999999999887 57899999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-32  Score=218.61  Aligned_cols=210  Identities=29%  Similarity=0.464  Sum_probs=183.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++.+.|||+++++. .+++|++|||+|+ |++|++++|+++..|++|+++++++++.+
T Consensus       130 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~  208 (347)
T 2hcy_A          130 TADAVQAAHIPQGTDLAQVAPILCAGITVYKALKSA-NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEE  208 (347)
T ss_dssp             EEETTTSEEECTTCCHHHHGGGGTHHHHHHHHHHTT-TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHH
T ss_pred             EeccccEEECCCCCCHHHHHHHhhhHHHHHHHHHhc-CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHH
Confidence            578899999999999999999999999999999877 5899999999998 99999999999999999999999888775


Q ss_pred             HHHHHcCCcEEecCCC-H---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCC
Q 027668           81 EAVERLGADSFLVSRD-Q---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~  154 (220)
                      .+ +++|++.+++..+ .   +.+++.++ ++|++||++|....++.++++++++|+++.+|.... ..+++...++.++
T Consensus       209 ~~-~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~  287 (347)
T 2hcy_A          209 LF-RSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKS  287 (347)
T ss_dssp             HH-HHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTT
T ss_pred             HH-HHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCC
Confidence            55 7899988887653 2   34444443 799999999986678899999999999999998763 3456666677899


Q ss_pred             cEEEEeeccCHHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          155 KIVGGSLIGGLKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       155 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      +++.|+...+..+++++++++++|.+++.+++|+++++++||+.+.+++..+|+|++++
T Consensus       288 ~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  346 (347)
T 2hcy_A          288 ISIVGSYVGNRADTREALDFFARGLVKSPIKVVGLSTLPEIYEKMEKGQIVGRYVVDTS  346 (347)
T ss_dssp             CEEEECCCCCHHHHHHHHHHHHTTSCCCCEEEEEGGGHHHHHHHHHTTCCSSEEEEESC
T ss_pred             cEEEEccCCCHHHHHHHHHHHHhCCCccceEEEcHHHHHHHHHHHHcCCcceeEEEecC
Confidence            99999988888999999999999999987899999999999999998887799999875

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=3.7e-33  Score=228.15  Aligned_cols=212  Identities=18%  Similarity=0.145  Sum_probs=184.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhc--cCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~   78 (220)
                      ++|++.++++|+++++++||++++.+.|||+++...  ..+++|++|||+|+ |++|++++|+++..|++|+++++++++
T Consensus       178 ~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~  257 (447)
T 4a0s_A          178 VVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQK  257 (447)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             ecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            578899999999999999999999999999998643  56899999999998 999999999999999999999988888


Q ss_pred             HHHHHHHcCCcEEecCCCH---------------------HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668           79 KSEAVERLGADSFLVSRDQ---------------------DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus        79 ~~~~~~~~g~~~v~~~~~~---------------------~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      ++.+ +++|++.++++.+.                     +.+.+.++ ++|++|||+|.. .++.++++++++|+++.+
T Consensus       258 ~~~~-~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G~~-~~~~~~~~l~~~G~iv~~  335 (447)
T 4a0s_A          258 EAAV-RALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRV-TFGLSVIVARRGGTVVTC  335 (447)
T ss_dssp             HHHH-HHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSCHH-HHHHHHHHSCTTCEEEES
T ss_pred             HHHH-HhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCCch-HHHHHHHHHhcCCEEEEE
Confidence            7666 78999888875432                     33444445 899999999986 688999999999999999


Q ss_pred             cCCCCC-cccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          137 GAPEKP-LELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       137 g~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      |...+. ..++...++.++.++.|+...+..++.++++++++|.+++.+ ++|+++++++||+.+.+++..+|+++.+.+
T Consensus       336 G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~GKvvv~~~~  415 (447)
T 4a0s_A          336 GSSSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQTSRQVGKVAVLCMA  415 (447)
T ss_dssp             CCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEESSC
T ss_pred             ecCCCcccccCHHHHHhCCCEEEecCCCCHHHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence            987643 456666678899999999999988999999999999999888 899999999999999999988999999855


Q ss_pred             c
Q 027668          215 T  215 (220)
Q Consensus       215 ~  215 (220)
                      +
T Consensus       416 ~  416 (447)
T 4a0s_A          416 P  416 (447)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=2e-32  Score=216.07  Aligned_cols=210  Identities=17%  Similarity=0.198  Sum_probs=181.5

Q ss_pred             ccc-CcceeeCCCCCCccc---ccccchhhhhhhhhhHhccCCCCCCEEEEEc-CchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668            2 VAD-EHFVVRIPEGAPLDA---TAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus         2 ~~~-~~~~~~~p~~~~~~~---aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ++| ++.++++|+++++++   ++++++.+.|||+++.+...+++|++|||+| +|++|++++|+++..|++|+++++++
T Consensus       104 ~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~  183 (334)
T 3qwb_A          104 KISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD  183 (334)
T ss_dssp             EEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            466 889999999999999   8889999999999998887799999999999 59999999999999999999999988


Q ss_pred             ccHHHHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCcccc
Q 027668           77 SKKSEAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPL  150 (220)
Q Consensus        77 ~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~  150 (220)
                      ++++.+ +++|++.++++.+.   +.+.+.++  ++|++|||+|.. .++.++++++++|+++.+|...+. ..++...+
T Consensus       184 ~~~~~~-~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~  261 (334)
T 3qwb_A          184 EKLKIA-KEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKD-TFEISLAALKRKGVFVSFGNASGLIPPFSITRL  261 (334)
T ss_dssp             HHHHHH-HHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGGG-GHHHHHHHEEEEEEEEECCCTTCCCCCBCGGGG
T ss_pred             HHHHHH-HHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCChH-HHHHHHHHhccCCEEEEEcCCCCCCCCcchhhh
Confidence            887755 78999999988764   34445553  799999999985 799999999999999999987654 36677778


Q ss_pred             ccCCcEEEEeecc----CHHH----HHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          151 LTGEKIVGGSLIG----GLKE----TQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       151 ~~~~~~i~~~~~~----~~~~----~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      +.+++++.++...    ...+    ++++++++++|.+++.+ ++|+++++++||+.+.+++..+|+|+++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~  333 (334)
T 3qwb_A          262 SPKNITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRKTVGKLVLEIP  333 (334)
T ss_dssp             TTTTCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHHTTCCCBEEEEECC
T ss_pred             hhCceEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCceeeEEcHHHHHHHHHHHHhCCCceEEEEecC
Confidence            8899999976432    3333    46889999999999988 89999999999999999998899999985

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=2.5e-33  Score=223.81  Aligned_cols=209  Identities=21%  Similarity=0.243  Sum_probs=176.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++|| +...+.+||++++.. .+++|++|||+|+|++|++++|+++.+|+ +|++++.++++++
T Consensus       144 ~v~~~~~~~~P~~~~~~~aa-l~~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  221 (370)
T 4ej6_A          144 LVPRKQAFEIPLTLDPVHGA-FCEPLACCLHGVDLS-GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRR  221 (370)
T ss_dssp             EEEGGGEEEECTTSCTTGGG-GHHHHHHHHHHHHHH-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHH
T ss_pred             EEchhhEEECCCCCCHHHHh-hhhHHHHHHHHHHhc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            57889999999999999997 777889999999554 58999999999999999999999999999 8888888887765


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHH---hcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccccc
Q 027668           81 EAVERLGADSFLVSRDQD---EMQA---AMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLL  151 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~---~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~~~  151 (220)
                      .+ +++|++.++++.+.+   .+++   .++ ++|+||||+|....+..++++++++|+++.+|....  ..+++...++
T Consensus       222 ~a-~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~  300 (370)
T 4ej6_A          222 LA-EEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDIL  300 (370)
T ss_dssp             HH-HHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHH
T ss_pred             HH-HHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHH
Confidence            54 789999999887644   3333   333 899999999987678999999999999999998765  4577777888


Q ss_pred             cCCcEEEEeeccCHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCC-cceEEEEEeCC
Q 027668          152 TGEKIVGGSLIGGLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKAD-VRYRFVIDVAN  214 (220)
Q Consensus       152 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~-~~~k~v~~~~~  214 (220)
                      .+++++.|+.... .+++++++++++|.+++  .+ ++|+++++++||+.+.+++ ..+|+++++++
T Consensus       301 ~~~~~i~g~~~~~-~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~~  366 (370)
T 4ej6_A          301 FRELRVLGSFINP-FVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAER  366 (370)
T ss_dssp             HTTCEEEECCSCT-TCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC---
T ss_pred             hCCcEEEEeccCh-HHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEcccc
Confidence            9999999998765 56999999999999964  36 8999999999999998776 44788888754

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=1.6e-32  Score=217.74  Aligned_cols=207  Identities=17%  Similarity=0.155  Sum_probs=177.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++. .+.|||+++++ ..+ +|++|||+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       130 ~v~~~~~~~iP~~~~~~~aa~~~-~~~ta~~~l~~-~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~  206 (348)
T 2d8a_A          130 VVPAQNIWKNPKSIPPEYATLQE-PLGNAVDTVLA-GPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRE  206 (348)
T ss_dssp             EEEGGGEEECCTTSCHHHHTTHH-HHHHHHHHHTT-SCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             EeChHHeEECCCCCCHHHHHhhh-HHHHHHHHHHh-cCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            57889999999999999998775 77899999954 457 99999999999999999999999999 9999999988776


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCc-cccccCC
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA-FPLLTGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~-~~~~~~~  154 (220)
                      .+ +++|++.++++.+.   +.+.+.++  ++|++|||+|....++.++++++++|+++.+|......+++. ..++.++
T Consensus       207 ~~-~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~  285 (348)
T 2d8a_A          207 LA-KKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKA  285 (348)
T ss_dssp             HH-HHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHTTTTT
T ss_pred             HH-HHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCcccCchHHHHhCC
Confidence            66 78999999987653   34555554  799999999986678899999999999999998765566666 6778899


Q ss_pred             cEEEEeeccC-HHHHHHHHHHHHhCCcc--eeE-EEEe-cccHHHHHHHHHcCCcceEEEEEeC
Q 027668          155 KIVGGSLIGG-LKETQEMIDFAAKHNIR--ADI-EVIP-ADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       155 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~--~~i-~~~~-~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      +++.|+.... .++++++++++++|.++  +.+ ++|+ ++++++||+.+.+ ...+|+|++++
T Consensus       286 ~~i~g~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~-~~~gKvvi~~~  348 (348)
T 2d8a_A          286 LTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRA-GKTGKVVFMLK  348 (348)
T ss_dssp             CEEEECCCCCSHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHT-TCCSEEEEEC-
T ss_pred             cEEEEecCCCcHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhC-CCceEEEEeeC
Confidence            9999987766 78899999999999964  556 8999 9999999999977 55689999863

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=4.3e-33  Score=216.95  Aligned_cols=206  Identities=24%  Similarity=0.353  Sum_probs=176.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++.+.|||+++.... +++|++|||+|+ |++|++++|+++.+|++|+++++++++++
T Consensus        86 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~  164 (302)
T 1iz0_A           86 AVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA  164 (302)
T ss_dssp             EEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH
T ss_pred             EEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            5788999999999999999999999999999998667 899999999997 99999999999999999999999988877


Q ss_pred             HHHHHcCCcEEecCCC-HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCCcEEE
Q 027668           81 EAVERLGADSFLVSRD-QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGEKIVG  158 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~-~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~~~i~  158 (220)
                      .+ +++|++.++++.+ .+..+.+ +++|++|| +|.. .++.++++++++|+++.+|..... .+++...++.+++++.
T Consensus       165 ~~-~~~ga~~~~~~~~~~~~~~~~-~~~d~vid-~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  240 (302)
T 1iz0_A          165 LP-LALGAEEAATYAEVPERAKAW-GGLDLVLE-VRGK-EVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVL  240 (302)
T ss_dssp             HH-HHTTCSEEEEGGGHHHHHHHT-TSEEEEEE-CSCT-THHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEE
T ss_pred             HH-HhcCCCEEEECCcchhHHHHh-cCceEEEE-CCHH-HHHHHHHhhccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEE
Confidence            66 6899999988876 5544444 78999999 9884 799999999999999999986543 3456666778999999


Q ss_pred             Eeecc----CHHHHHHHHH---HHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          159 GSLIG----GLKETQEMID---FAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       159 ~~~~~----~~~~~~~~~~---~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      |+...    ..+.++++++   ++++|.+++.+ ++|+++++++||+.+.+++..+|+++++
T Consensus       241 g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  302 (302)
T 1iz0_A          241 GFWLTPLLREGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL  302 (302)
T ss_dssp             ECCHHHHTTCHHHHHHHHHHHGGGBTTTBCCCEEEEEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred             EEeccchhhhHHHHHHHHhhhHHHHcCCcccccceEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            98753    5677899999   99999999887 8999999999999998887789999864

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=1.2e-32  Score=219.45  Aligned_cols=209  Identities=18%  Similarity=0.218  Sum_probs=179.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCC-----CCCEEEEEc-CchHHHHHHHHHHH-CCCeEEEEeC
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDK-----PGMHVGVVG-LGGLGHVAVKFAKA-MGVKVTVIST   74 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-----~~~~vlI~G-~g~~G~~~~~~~~~-~g~~v~~~~~   74 (220)
                      ++|++.++++|+++++++||+++++++|||+++.....++     +|++|||+| +|++|++++|+|+. .|++|+++++
T Consensus       126 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~  205 (363)
T 4dvj_A          126 LVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDLTVIATAS  205 (363)
T ss_dssp             EEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECS
T ss_pred             EeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5788999999999999999999999999999997777677     899999999 59999999999998 5889999999


Q ss_pred             CcccHHHHHHHcCCcEEecCCCH--HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccc
Q 027668           75 SPSKKSEAVERLGADSFLVSRDQ--DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL  151 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~v~~~~~~--~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~  151 (220)
                      ++++++.+ +++|++.++++.+.  +.+++..+ ++|+||||+|....++.++++++++|+++.+|..   ..++...+.
T Consensus       206 ~~~~~~~~-~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~---~~~~~~~~~  281 (363)
T 4dvj_A          206 RPETQEWV-KSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDP---SAFDIMLFK  281 (363)
T ss_dssp             SHHHHHHH-HHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSCC---SSCCGGGGT
T ss_pred             CHHHHHHH-HHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECCC---CccchHHHh
Confidence            98887666 78999999988652  34444433 8999999999876789999999999999999653   356667778


Q ss_pred             cCCcEEEEeeccC------------HHHHHHHHHHHHhCCcceeE-EEE---ecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          152 TGEKIVGGSLIGG------------LKETQEMIDFAAKHNIRADI-EVI---PADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       152 ~~~~~i~~~~~~~------------~~~~~~~~~~~~~~~~~~~i-~~~---~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      .+++++.++...+            .+.++++++++++|.+++.+ +++   +++++++||+.+.+++..||+|+++..
T Consensus       282 ~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~~~  360 (363)
T 4dvj_A          282 RKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTLTNRLSPINAANLKQAHALVESGTARGKVVIEGFG  360 (363)
T ss_dssp             TTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCCCEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEECSC
T ss_pred             hccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeeccccceecCCCHHHHHHHHHHHHhCCCceEEEEeCcc
Confidence            8999999876543            25578999999999999887 666   899999999999999988999999854

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=3e-33  Score=219.56  Aligned_cols=206  Identities=23%  Similarity=0.254  Sum_probs=174.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEc-CchHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G-~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++++.|||++++ ...+++|++|||+| +|++|++++|+++.+|++|+++++ ++++ 
T Consensus       113 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~-~~~~-  189 (321)
T 3tqh_A          113 CASPDTIIQKLEKLSFLQAASLPTAGLTALQALN-QAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-KRNH-  189 (321)
T ss_dssp             EECGGGEEECCTTSCHHHHHHSHHHHHHHHHHHH-HTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEEC-HHHH-
T ss_pred             EecHHHhccCCCCCCHHHHhhhhhHHHHHHHHHH-hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEec-cchH-
Confidence            5788999999999999999999999999999994 55689999999998 599999999999999999998874 4444 


Q ss_pred             HHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEe
Q 027668           81 EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGS  160 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~  160 (220)
                      ++++++|++.++++.+.+...+..+++|++|||+|... ...++++++++|+++.+|.......  ...+..+++++.++
T Consensus       190 ~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~--~~~~~~~~~~~~~~  266 (321)
T 3tqh_A          190 AFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGDV-GIQSIDCLKETGCIVSVPTITAGRV--IEVAKQKHRRAFGL  266 (321)
T ss_dssp             HHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCHHH-HHHHGGGEEEEEEEEECCSTTHHHH--HHHHHHTTCEEECC
T ss_pred             HHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCcHH-HHHHHHhccCCCEEEEeCCCCchhh--hhhhhhcceEEEEE
Confidence            44588999999998876634444479999999999985 6899999999999999986543211  12345678888885


Q ss_pred             e-ccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          161 L-IGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       161 ~-~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      . ..+.++++++++++++|.+++.+ ++|+++++++||+.+.+++..+|+|+++.
T Consensus       267 ~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  321 (321)
T 3tqh_A          267 LKQFNIEELHYLGKLVSEDKLRIEISRIFQLSEAVTAHELLETGHVRGKLVFKVR  321 (321)
T ss_dssp             CCCCCHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             ecCCCHHHHHHHHHHHHCCCcccccccEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence            3 45678899999999999999988 89999999999999999998899999863

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=1.6e-32  Score=217.59  Aligned_cols=207  Identities=26%  Similarity=0.351  Sum_probs=182.5

Q ss_pred             cccC-cceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHC-CCeEEEEeCCccc
Q 027668            2 VADE-HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSK   78 (220)
Q Consensus         2 ~~~~-~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~-g~~v~~~~~~~~~   78 (220)
                      ++|+ +.++++ +++++++||++++++.|||+++++ ..+++|++|||+|+ |++|++++|+++.. |++|+++++++++
T Consensus       131 ~v~~~~~~~~i-~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~  208 (347)
T 1jvb_A          131 IVPHYKYMYKL-RRLNAVEAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEA  208 (347)
T ss_dssp             EESCGGGEEEC-SSSCHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHH
T ss_pred             EecCccceEEe-CCCCHHHcccchhhHHHHHHHHHh-cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHH
Confidence            5788 899999 999999999999999999999976 55899999999998 59999999999999 9999999999888


Q ss_pred             HHHHHHHcCCcEEecCCCHHH---HHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC-CCcccCcccccc
Q 027668           79 KSEAVERLGADSFLVSRDQDE---MQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KPLELPAFPLLT  152 (220)
Q Consensus        79 ~~~~~~~~g~~~v~~~~~~~~---~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~-~~~~~~~~~~~~  152 (220)
                      ++.+ +++|++.+++..+.+.   +.+.+  +++|++||++|....++.++++++++|+++.+|... .. +++...++.
T Consensus       209 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~  286 (347)
T 1jvb_A          209 VEAA-KRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHAPLITL  286 (347)
T ss_dssp             HHHH-HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCHHHHHH
T ss_pred             HHHH-HHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCHHHHHh
Confidence            7666 7899998888766433   45555  489999999998766889999999999999999876 44 666667788


Q ss_pred             CCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          153 GEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       153 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +++++.++...+.++++++++++++|.+++.+ ++|+++++++||+.+.+++..+|+|+++
T Consensus       287 ~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          287 SEIQFVGSLVGNQSDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             HTCEEEECCSCCHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             CceEEEEEeccCHHHHHHHHHHHHcCCCCceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence            99999999888889999999999999999887 8999999999999999888789999874

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1.2e-32  Score=217.94  Aligned_cols=207  Identities=15%  Similarity=0.160  Sum_probs=177.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++ ..+.|||+++.....+ +|++|||+|+|++|++++|+++.+|+ +|+++++++++++
T Consensus       126 ~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~  203 (343)
T 2dq4_A          126 VVPAENAWVNPKDLPFEVAAIL-EPFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLA  203 (343)
T ss_dssp             EEEGGGEEEECTTSCHHHHTTH-HHHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHG
T ss_pred             EEchHHeEECCCCCCHHHHHhh-hHHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            5788999999999999999877 4667999999745568 99999999999999999999999999 9999999988776


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCc-cccccCCc
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA-FPLLTGEK  155 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~-~~~~~~~~  155 (220)
                      .+ +++ ++.++++.+.   +.+++.++ ++|++||++|....++.++++++++|+++.+|......+++. ..++.+++
T Consensus       204 ~~-~~l-a~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~  281 (343)
T 2dq4_A          204 FA-RPY-ADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGI  281 (343)
T ss_dssp             GG-TTT-CSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCEEECHHHHTGGGTC
T ss_pred             HH-HHh-HHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCceeCcHHHHHhCce
Confidence            66 678 9989987753   33444434 899999999986678999999999999999998765566776 67788999


Q ss_pred             EEEEeecc-CHHHHHHHHHHHHhCCc--ceeE-EEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          156 IVGGSLIG-GLKETQEMIDFAAKHNI--RADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       156 ~i~~~~~~-~~~~~~~~~~~~~~~~~--~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      ++.|+... ..++++++++++++|.+  .+.+ ++|+++++++||+.+.+++. +|+|++++
T Consensus       282 ~i~g~~~~~~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-gKvv~~~~  342 (343)
T 2dq4_A          282 TAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQA-VKVILDPK  342 (343)
T ss_dssp             EEEECCSCCTTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSC-SEEEEETT
T ss_pred             EEEEeecCCCHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCc-eEEEEeeC
Confidence            99998776 67889999999999985  4556 89999999999999988877 89999874

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=7.3e-33  Score=220.34  Aligned_cols=210  Identities=19%  Similarity=0.278  Sum_probs=174.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc--
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK--   78 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~--   78 (220)
                      ++|++.++++|+++++++||++++.+.|||+++.....+++|++|||+|+ |++|++++|+|+.+|++++++++++++  
T Consensus       127 ~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~  206 (357)
T 1zsy_A          127 VFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQ  206 (357)
T ss_dssp             EEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHH
T ss_pred             ecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchH
Confidence            57889999999999999999999999999999988777999999999997 999999999999999988888766542  


Q ss_pred             -HHHHHHHcCCcEEecCCCH--HHHHHhcC---CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccc
Q 027668           79 -KSEAVERLGADSFLVSRDQ--DEMQAAMG---TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLL  151 (220)
Q Consensus        79 -~~~~~~~~g~~~v~~~~~~--~~~~~~~~---~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~  151 (220)
                       +.++++++|++.++++.+.  +.+.+.++   ++|+||||+|... ...++++++++|+++.+|.... ...++...++
T Consensus       207 ~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~  285 (357)
T 1zsy_A          207 KLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKS-STELLRQLARGGTMVTYGGMAKQPVVASVSLLI  285 (357)
T ss_dssp             HHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEESSCHHH-HHHHHTTSCTTCEEEECCCCTTCCBCCCHHHHH
T ss_pred             HHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEECCCcHH-HHHHHHhhCCCCEEEEEecCCCCCCCCCHHHHH
Confidence             2344579999999876432  23334433   5999999999874 5678999999999999986543 4556666677


Q ss_pred             cCCcEEEEeeccC----------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          152 TGEKIVGGSLIGG----------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       152 ~~~~~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      .+++++.++....          .+.++++++++++|.+++.+ ++|+++++++||+.+.+++..+|+|+++
T Consensus       286 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  357 (357)
T 1zsy_A          286 FKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSKQILTM  357 (357)
T ss_dssp             HSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHTSSSCSSEEEEEC
T ss_pred             hcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCccceEEcHHHHHHHHHHHHhCCCCCcEEEeC
Confidence            8999999986532          23578899999999999877 9999999999999998888778999874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=5.8e-33  Score=223.85  Aligned_cols=213  Identities=18%  Similarity=0.195  Sum_probs=178.6

Q ss_pred             cccCc--ceeeCCCCCCccc----ccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeC
Q 027668            2 VADEH--FVVRIPEGAPLDA----TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVIST   74 (220)
Q Consensus         2 ~~~~~--~~~~~p~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~   74 (220)
                      ++|++  .++++|+++++++    ||++++.+.|||++++. ..+++|++|||+|+|++|++++|+++.+|+ +|+++++
T Consensus       140 ~v~~~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  218 (398)
T 2dph_A          140 LVPYADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGCVS-AGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQ  218 (398)
T ss_dssp             EESSHHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEES
T ss_pred             EeccccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            45665  7999999999988    88899999999999964 558999999999999999999999999999 9999999


Q ss_pred             CcccHHHHHHHcCCcEEecCCC----HHHHHHhcC--CccEEEEcCCCcc--------------cHHHHHhccccCCEEE
Q 027668           75 SPSKKSEAVERLGADSFLVSRD----QDEMQAAMG--TMDGIIDTVSAVH--------------PLMPLIGLLKSQGKLV  134 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~v~~~~~----~~~~~~~~~--~~d~vid~~g~~~--------------~~~~~~~~l~~~g~iv  134 (220)
                      ++++++.+ +++|++ ++++.+    .+.+++.++  ++|+||||+|...              .+..++++++++|+++
T Consensus       219 ~~~~~~~a-~~lGa~-~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv  296 (398)
T 2dph_A          219 NPERLKLL-SDAGFE-TIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIG  296 (398)
T ss_dssp             CHHHHHHH-HTTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEE
T ss_pred             CHHHHHHH-HHcCCc-EEcCCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEE
Confidence            98887666 789996 777655    344555554  7999999999763              4788999999999999


Q ss_pred             EecCCC-------------CCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcc--e--eE-EEEecccHHHHH
Q 027668          135 LLGAPE-------------KPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIR--A--DI-EVIPADYVNTAM  196 (220)
Q Consensus       135 ~~g~~~-------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~--~i-~~~~~~~i~~a~  196 (220)
                      .+|...             ...+++...++.+++++.++.....++++++++++++|.++  +  .+ ++|+++++++||
T Consensus       297 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~  376 (398)
T 2dph_A          297 IPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGY  376 (398)
T ss_dssp             CCSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCCGGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHH
T ss_pred             EeccccccccccccccccCCcccccHHHHhhcCCEEEEeccCcHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHH
Confidence            999762             12344555667899999988776677899999999999998  6  34 899999999999


Q ss_pred             HHHHcCCcceEEEEEeCCcccc
Q 027668          197 ERLAKADVRYRFVIDVANTMKS  218 (220)
Q Consensus       197 ~~~~~~~~~~k~v~~~~~~~~~  218 (220)
                      +.+.+++. +|+|+.+++...+
T Consensus       377 ~~~~~~~~-gKvvv~~~~~~~~  397 (398)
T 2dph_A          377 AKFDKGSP-AKFVIDPHGMLKN  397 (398)
T ss_dssp             HHHHTTCS-CEEEECTTSCCCC
T ss_pred             HHHhcCCc-eEEEEecCccccC
Confidence            99998887 9999998765443

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=1.4e-33  Score=221.87  Aligned_cols=209  Identities=19%  Similarity=0.214  Sum_probs=177.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhc--cCCCC--CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKP--GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~--~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ++|++.++++|+++++++||++++.+.|||+++...  ..+++  |+ |||+|+ |++|++++|+++.+|++|++++.++
T Consensus       103 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~  181 (324)
T 3nx4_A          103 RVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRE  181 (324)
T ss_dssp             EECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             ecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCe-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578899999999999999999999999999888533  23566  45 999997 9999999999999999999999998


Q ss_pred             ccHHHHHHHcCCcEEecCCCHHHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCC
Q 027668           77 SKKSEAVERLGADSFLVSRDQDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGE  154 (220)
Q Consensus        77 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~  154 (220)
                      ++++.+ +++|++.++++.+.+.++++++ ++|++|||+|.. .++.++++++++|+++.+|..... .+++...++.++
T Consensus       182 ~~~~~~-~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~  259 (324)
T 3nx4_A          182 STHGYL-KSLGANRILSRDEFAESRPLEKQLWAGAIDTVGDK-VLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRN  259 (324)
T ss_dssp             GGHHHH-HHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCHH-HHHHHHHTEEEEEEEEECCCTTCSEEEEESHHHHHHC
T ss_pred             HHHHHH-HhcCCCEEEecCCHHHHHhhcCCCccEEEECCCcH-HHHHHHHHHhcCCEEEEEecCCCCCCCCCHHHHhhcC
Confidence            887766 7899999998766443333443 899999999987 789999999999999999987653 456666778899


Q ss_pred             cEEEEeeccC------HHHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          155 KIVGGSLIGG------LKETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       155 ~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      +++.++....      .+.++.+++++++|.+++..++|+++++++||+.+.+++..+|+|++++
T Consensus       260 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~~  324 (324)
T 3nx4_A          260 VRLQGVDSVMTPPARRAEAWARLVKDLPESFYAQAATEITLADAPKFADAIINNQVQGRTLVKIK  324 (324)
T ss_dssp             CEEEECCSTTCCHHHHHHHHHHHHHHSCHHHHHHHEEEEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             eEEEEEeccccChHHHHHHHHHHHHHHHcCCCCCCceeEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence            9999986532      2557888899999998876789999999999999999998899999874

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=3.2e-32  Score=214.04  Aligned_cols=209  Identities=21%  Similarity=0.253  Sum_probs=177.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++.+.|+|+++.....+++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       100 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  179 (325)
T 3jyn_A          100 VLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAA  179 (325)
T ss_dssp             EEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH
T ss_pred             EecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            57889999999999999999999999999999988878999999999994 99999999999999999999999988877


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCc-ccCccccccC-
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL-ELPAFPLLTG-  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~-~~~~~~~~~~-  153 (220)
                      .+ +++|++.++++.+.   +.+.+.++  ++|++|||+|.. .+..++++++++|+++.+|...... .++...+..+ 
T Consensus       180 ~~-~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~  257 (325)
T 3jyn_A          180 HA-KALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQD-TWLTSLDSVAPRGLVVSFGNASGPVSGVNLGILAQKD  257 (325)
T ss_dssp             HH-HHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCGG-GHHHHHTTEEEEEEEEECCCTTCCCCSCCTHHHHHTT
T ss_pred             HH-HHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCChH-HHHHHHHHhcCCCEEEEEecCCCCCCCCCHHHHhhcC
Confidence            66 68999999988764   34445554  799999999985 7899999999999999999876543 5666666666 


Q ss_pred             CcEEEEeec----cCHHH----HHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          154 EKIVGGSLI----GGLKE----TQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~i~~~~~----~~~~~----~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ++++.+...    .++.+    ++++++++++|.+++.+ ++|+++++++||+.+.+++..||+|+.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          258 SVYVTRPTLGSYANNAQNLQTMADELFDMLASGKLKVDGIEQYALKDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             SCEEECCCHHHHSCSTTHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             cEEEEeeeeeeecCCHHHHHHHHHHHHHHHHCCCeeCccccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            566654322    22333    45889999999999988 9999999999999999999999999864

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=1.5e-32  Score=219.01  Aligned_cols=207  Identities=13%  Similarity=0.133  Sum_probs=173.2

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+ +++++||++ ..+.|||++++.. .+++|++|||+|+|++|++++|+++.+|++ |++++.++++++
T Consensus       142 ~v~~~~~~~iP~-~s~~~aa~~-~~~~ta~~~l~~~-~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~  218 (363)
T 3m6i_A          142 NHPAVWCHKIGN-MSYENGAML-EPLSVALAGLQRA-GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLK  218 (363)
T ss_dssp             EEEGGGEEECTT-CCHHHHHHH-HHHHHHHHHHHHH-TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHH
T ss_pred             EEehhhEEECCC-CCHHHHHhh-hHHHHHHHHHHHc-CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH
Confidence            578899999999 999999977 4778999999654 489999999999999999999999999996 999999988877


Q ss_pred             HHHHHcCCcEEecCC----C-H---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCcccc
Q 027668           81 EAVERLGADSFLVSR----D-Q---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPL  150 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~----~-~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~  150 (220)
                      .+ +++ ++.++++.    + .   +.+++.++  ++|++|||+|....++.++++++++|+++.+|.......++...+
T Consensus       219 ~a-~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~  296 (363)
T 3m6i_A          219 FA-KEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRA  296 (363)
T ss_dssp             HH-HHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCSCCCCCHHHH
T ss_pred             HH-HHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCCCccccHHHH
Confidence            66 567 53333321    2 2   34455553  899999999998678999999999999999998776667777788


Q ss_pred             ccCCcEEEEeeccCHHHHHHHHHHHHhCCcc--eeE-EEEecccHHHHHHHHHcC-CcceEEEEEeCC
Q 027668          151 LTGEKIVGGSLIGGLKETQEMIDFAAKHNIR--ADI-EVIPADYVNTAMERLAKA-DVRYRFVIDVAN  214 (220)
Q Consensus       151 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~i-~~~~~~~i~~a~~~~~~~-~~~~k~v~~~~~  214 (220)
                      +.+++++.++..+ .++++++++++++|.++  +.+ ++|+++++++||+.+.++ ...+|++++.++
T Consensus       297 ~~~~~~i~g~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  363 (363)
T 3m6i_A          297 SVREVDLQFQYRY-CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE  363 (363)
T ss_dssp             HHHTCEEEECCSC-SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred             HhcCcEEEEccCC-HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence            8899999999776 67899999999999985  446 899999999999999987 556899998753

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.7e-32  Score=216.46  Aligned_cols=210  Identities=19%  Similarity=0.264  Sum_probs=168.0

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCC-CeEEEEeCCcccH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKK   79 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g-~~v~~~~~~~~~~   79 (220)
                      ++|++.++++|+++++++||++++.+.|||+++.+...+++|++|||+|+ |++|++++|+++.+| .+|++++ +++++
T Consensus       102 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~  180 (349)
T 4a27_A          102 CTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKH  180 (349)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGH
T ss_pred             EecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHH
Confidence            57889999999999999999999999999999987777999999999998 999999999999996 4888877 45555


Q ss_pred             HHHHHHcCCcEEecCCC--HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC--------------
Q 027668           80 SEAVERLGADSFLVSRD--QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--------------  142 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~--~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~--------------  142 (220)
                      +.+ + +|++.+++...  .+.+++.++ ++|++|||+|... +..++++++++|+++.+|.....              
T Consensus       181 ~~~-~-~ga~~~~~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~  257 (349)
T 4a27_A          181 EAI-K-DSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGDN-TGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSW  257 (349)
T ss_dssp             HHH-G-GGSSEEEETTSCHHHHHHHHCTTCEEEEEEECC--------CTTEEEEEEEEEEC-------------------
T ss_pred             HHH-H-cCCcEEEcCCccHHHHHHHhcCCCceEEEECCCchh-HHHHHHHhhcCCEEEEECCCccccccccccccccccc
Confidence            544 5 99999988322  244555554 8999999999974 68899999999999999975311              


Q ss_pred             ---cccCccccccCCcEEEEeeccC-----------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceE
Q 027668          143 ---LELPAFPLLTGEKIVGGSLIGG-----------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYR  207 (220)
Q Consensus       143 ---~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k  207 (220)
                         ..++...++.++.++.++....           .++++++++++++|.+++.+ ++|+++++++||+.+.+++..+|
T Consensus       258 ~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~l~~~~~~GK  337 (349)
T 4a27_A          258 WQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKPVVDSLWALEEVKEAMQRIHDRGNIGK  337 (349)
T ss_dssp             ------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSCCCCEEEEECGGGHHHHHHHHHTTCCSSE
T ss_pred             ccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCccccccceECHHHHHHHHHHHHhCCCCce
Confidence               1244555677899999986532           57789999999999999888 89999999999999999998899


Q ss_pred             EEEEeCCc
Q 027668          208 FVIDVANT  215 (220)
Q Consensus       208 ~v~~~~~~  215 (220)
                      +|++++++
T Consensus       338 vvi~~~~~  345 (349)
T 4a27_A          338 LILDVEKT  345 (349)
T ss_dssp             EEEETTCC
T ss_pred             EEEecCCC
Confidence            99999775

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=4.7e-32  Score=213.82  Aligned_cols=211  Identities=19%  Similarity=0.247  Sum_probs=179.7

Q ss_pred             cccCcceeeCCCCCCccc--ccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc
Q 027668            2 VADEHFVVRIPEGAPLDA--TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~--aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~   78 (220)
                      ++|++.++++|+++++++  ||++++.+.|||+++.....+++|++|||+|+ |++|++++|+++..|++|+++++++++
T Consensus       103 ~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~  182 (333)
T 1wly_A          103 LYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEK  182 (333)
T ss_dssp             EEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             EecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            578899999999999999  89999999999999987677899999999996 999999999999999999999999887


Q ss_pred             HHHHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCcc-ccc
Q 027668           79 KSEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAF-PLL  151 (220)
Q Consensus        79 ~~~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~-~~~  151 (220)
                      ++.+ +++|++.+++..+.+   .+.+.++  ++|++|||+|.. .++.++++++++|+++.+|...+ ..+++.. .++
T Consensus       183 ~~~~-~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~  260 (333)
T 1wly_A          183 AETA-RKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKD-TLQKSLDCLRPRGMCAAYGHASGVADPIRVVEDLG  260 (333)
T ss_dssp             HHHH-HHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCTT-THHHHHHTEEEEEEEEECCCTTCCCCCCCHHHHTT
T ss_pred             HHHH-HHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcHH-HHHHHHHhhccCCEEEEEecCCCCcCCCChhHhhh
Confidence            7666 679999888876543   3444443  799999999984 79999999999999999998653 3456665 677


Q ss_pred             cCC--cEEEEeecc---CH----HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          152 TGE--KIVGGSLIG---GL----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       152 ~~~--~~i~~~~~~---~~----~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      .++  +++.|+...   ..    +.++++++++++|.+++.+ ++|+++++++||+.+.+++..+|+++++++
T Consensus       261 ~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  333 (333)
T 1wly_A          261 VRGSLFITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAAAAHKYMGGRQTIGSIVLLPQA  333 (333)
T ss_dssp             TTTSCEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred             hcCCcEEEEEeehhhccCHHHHHHHHHHHHHHHHCCCcCCCcceEEeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            788  898887541   22    3688999999999999887 899999999999999988878999998753

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=8.5e-32  Score=213.44  Aligned_cols=208  Identities=19%  Similarity=0.194  Sum_probs=171.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||+++. ..++++++... .+++|++|||+|+|++|++++|+++++|++ +++++.++++++
T Consensus       122 ~v~~~~~~~iP~~l~~~~aa~l~~-~~~~~~~~~~~-~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~  199 (346)
T 4a2c_A          122 VVKRKNVFALPTDMPIEDGAFIEP-ITVGLHAFHLA-QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLA  199 (346)
T ss_dssp             EEEGGGEEECCTTSCGGGGGGHHH-HHHHHHHHHHT-TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             ccchheEEECCCCCCHHHHHhchH-HHHHHHHHHHh-ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHH
Confidence            578999999999999999997653 45556665544 579999999999999999999999999995 466667776665


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCccc---Ccccccc
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLEL---PAFPLLT  152 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~---~~~~~~~  152 (220)
                      .+ +++|++.++++.+.   +..+++++  ++|++|||+|....++.++++++++|+++.+|.......+   +...++.
T Consensus       200 ~a-~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~  278 (346)
T 4a2c_A          200 LA-KSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILR  278 (346)
T ss_dssp             HH-HHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHH
T ss_pred             HH-HHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccccccchhhhhhheecCCeEEEEEeccCCCccccccCHHHHhh
Confidence            44 89999999998764   34445554  8999999999887889999999999999999987765333   3345678


Q ss_pred             CCcEEEEeecc-----CHHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          153 GEKIVGGSLIG-----GLKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       153 ~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +++++.|+...     ..++++++++++++|++++  .+ ++|+|+++++||+.+.+++..||+|+.+
T Consensus       279 k~~~i~G~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          279 KELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             HTCEEEECCTTCCSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred             ceeEEEEEeccccCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence            99999998653     2467999999999998864  36 8999999999999999998889999864

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=4.3e-32  Score=214.76  Aligned_cols=208  Identities=19%  Similarity=0.187  Sum_probs=173.9

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++++.|||+++.+...+++|++|||+|+ |++|++++|+++..|++|+++ .++++++
T Consensus       110 ~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~  188 (343)
T 3gaz_A          110 AVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLE  188 (343)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHH
T ss_pred             EecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHH
Confidence            57889999999999999999999999999999966667999999999995 999999999999999999998 7777766


Q ss_pred             HHHHHcCCcEEecCCC--HHHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcE
Q 027668           81 EAVERLGADSFLVSRD--QDEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKI  156 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~--~~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~  156 (220)
                      .+ +++|++. ++..+  .+.+.+.++  ++|++|||+|.. .+..++++++++|+++.+|...   .++...+..++++
T Consensus       189 ~~-~~lGa~~-i~~~~~~~~~~~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~G~iv~~g~~~---~~~~~~~~~~~~~  262 (343)
T 3gaz_A          189 YV-RDLGATP-IDASREPEDYAAEHTAGQGFDLVYDTLGGP-VLDASFSAVKRFGHVVSCLGWG---THKLAPLSFKQAT  262 (343)
T ss_dssp             HH-HHHTSEE-EETTSCHHHHHHHHHTTSCEEEEEESSCTH-HHHHHHHHEEEEEEEEESCCCS---CCCCHHHHHTTCE
T ss_pred             HH-HHcCCCE-eccCCCHHHHHHHHhcCCCceEEEECCCcH-HHHHHHHHHhcCCeEEEEcccC---ccccchhhhcCcE
Confidence            55 7899988 55222  244455554  899999999985 6899999999999999998765   3455667789999


Q ss_pred             EEEeeccCH-----------HHHHHHHHHHHhCCcceeE--EEEecccHHHHHHHHHcCCc----ceEEEEEeCCcc
Q 027668          157 VGGSLIGGL-----------KETQEMIDFAAKHNIRADI--EVIPADYVNTAMERLAKADV----RYRFVIDVANTM  216 (220)
Q Consensus       157 i~~~~~~~~-----------~~~~~~~~~~~~~~~~~~i--~~~~~~~i~~a~~~~~~~~~----~~k~v~~~~~~~  216 (220)
                      +.++.....           ++++++++++++|.+++.+  ++|+++++++||+.+.+++.    .||++++++.+.
T Consensus       263 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~~~~  339 (343)
T 3gaz_A          263 YSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVEGHH  339 (343)
T ss_dssp             EEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCCCCBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC---
T ss_pred             EEEEEeccchhcccchHHHHHHHHHHHHHHHCCCcccCccCcEecHHHHHHHHHHHHcCCCcccccceEEEEecccc
Confidence            999865432           6689999999999999876  49999999999999998765    589999997764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=6e-33  Score=217.34  Aligned_cols=202  Identities=15%  Similarity=0.243  Sum_probs=154.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSE   81 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~   81 (220)
                      ++|++.++++|+++++++||++++.+.|||+++ ....+++|++|||+|+|++|++++|+++.+|++|++++ ++++++.
T Consensus       103 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~  180 (315)
T 3goh_A          103 VLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQAL  180 (315)
T ss_dssp             EEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHH
T ss_pred             EEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHH
Confidence            578999999999999999999999999999999 56668999999999999999999999999999999999 7777766


Q ss_pred             HHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCc--cccccCCcEEEE
Q 027668           82 AVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPA--FPLLTGEKIVGG  159 (220)
Q Consensus        82 ~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~--~~~~~~~~~i~~  159 (220)
                      + +++|++.+++  +   .+++.+++|++|||+|... ...++++++++|+++.+|........+.  ..+..+++++.+
T Consensus       181 ~-~~lGa~~v~~--d---~~~v~~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  253 (315)
T 3goh_A          181 A-AKRGVRHLYR--E---PSQVTQKYFAIFDAVNSQN-AAALVPSLKANGHIICIQDRIPAPIDPAFTRTISYHEIALGA  253 (315)
T ss_dssp             H-HHHTEEEEES--S---GGGCCSCEEEEECC--------TTGGGEEEEEEEEEECCC----------CCSEEEEECGGG
T ss_pred             H-HHcCCCEEEc--C---HHHhCCCccEEEECCCchh-HHHHHHHhcCCCEEEEEeCCCCccccchhhhcceeeEEEeec
Confidence            6 7899998884  2   2233459999999999974 6889999999999999976543222221  112223333333


Q ss_pred             eec-cCH-------HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          160 SLI-GGL-------KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       160 ~~~-~~~-------~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      +.. .+.       +.++++++++++|.+++.+ ++|+++++++||+.+.  +..+|+|+++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~gKvvi~~~~  315 (315)
T 3goh_A          254 LHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEALDHSE--QTKLKTVLTLNE  315 (315)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHHH--HHCCCEEEESCC
T ss_pred             ccccCChhHHHHHHHHHHHHHHHHHCCCcccccceEecHHHHHHHHHHHH--hcCCcEEEEecC
Confidence            322 222       2467899999999999887 9999999999999998  566899999864

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.98  E-value=8.1e-32  Score=217.24  Aligned_cols=211  Identities=19%  Similarity=0.162  Sum_probs=174.3

Q ss_pred             cccCc--ceeeCCCCCCccc----ccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeC
Q 027668            2 VADEH--FVVRIPEGAPLDA----TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVIST   74 (220)
Q Consensus         2 ~~~~~--~~~~~p~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~   74 (220)
                      ++|++  .++++|+++++++    ++++++.+.|||++++. ..+++|++|||+|+|++|++++|+|+.+|+ +|++++.
T Consensus       140 ~v~~~~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~  218 (398)
T 1kol_A          140 LVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL  218 (398)
T ss_dssp             EESSHHHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEES
T ss_pred             EecchhCeEEECCCCcchhhhcccccccccHHHHHHHHHHH-cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcC
Confidence            45665  7999999999887    68899999999999975 458999999999999999999999999999 7899999


Q ss_pred             CcccHHHHHHHcCCcEEecCCC----HHHHHHhcC--CccEEEEcCCCcc---------------cHHHHHhccccCCEE
Q 027668           75 SPSKKSEAVERLGADSFLVSRD----QDEMQAAMG--TMDGIIDTVSAVH---------------PLMPLIGLLKSQGKL  133 (220)
Q Consensus        75 ~~~~~~~~~~~~g~~~v~~~~~----~~~~~~~~~--~~d~vid~~g~~~---------------~~~~~~~~l~~~g~i  133 (220)
                      ++++++.+ +++|++ ++++.+    .+.+++.++  ++|+||||+|...               .++.++++++++|++
T Consensus       219 ~~~~~~~a-~~lGa~-~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~i  296 (398)
T 1kol_A          219 NPARLAHA-KAQGFE-IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKI  296 (398)
T ss_dssp             CHHHHHHH-HHTTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEE
T ss_pred             CHHHHHHH-HHcCCc-EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEE
Confidence            88887666 789997 677654    245556554  7999999999862               578999999999999


Q ss_pred             EEecCCC-C------------CcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcc---eeE-EEEecccHHHHH
Q 027668          134 VLLGAPE-K------------PLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIR---ADI-EVIPADYVNTAM  196 (220)
Q Consensus       134 v~~g~~~-~------------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~i-~~~~~~~i~~a~  196 (220)
                      +.+|... .            ..+++...++.+++++.++.....+.++++++++++|.++   +.+ ++|+++++++||
T Consensus       297 v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~  376 (398)
T 1kol_A          297 GIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGY  376 (398)
T ss_dssp             EECSCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSCCHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHH
T ss_pred             EEeccccCCcccccccccccccccccHHHHhhcccEEEecccChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHH
Confidence            9999752 1            1234444567789999987655567789999999999998   334 899999999999


Q ss_pred             HHHHcCCcceEEEEEeCCcc
Q 027668          197 ERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       197 ~~~~~~~~~~k~v~~~~~~~  216 (220)
                      +.+.+++. +|+|++++...
T Consensus       377 ~~~~~~~~-gKvvi~~~~~~  395 (398)
T 1kol_A          377 GEFDAGVP-KKFVIDPHKTF  395 (398)
T ss_dssp             HHHHHTCS-CEEEECTTCSS
T ss_pred             HHHhCCCc-eEEEEEeCCcc
Confidence            99988887 99999986553

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.98  E-value=5e-32  Score=215.24  Aligned_cols=210  Identities=20%  Similarity=0.253  Sum_probs=177.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++.+.|||+++.....+++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       122 ~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~  201 (354)
T 2j8z_A          122 TVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQ  201 (354)
T ss_dssp             EEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred             EeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            57889999999999999999999999999999976677999999999995 99999999999999999999999988877


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCc-cccccC
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPA-FPLLTG  153 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~-~~~~~~  153 (220)
                      .+ +++|++.+++..+.+   .+.+.++  ++|++|||+|.. .+..++++++++|+++.+|..... .+++. ..++.+
T Consensus       202 ~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~  279 (354)
T 2j8z_A          202 MA-EKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGS-YWEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFK  279 (354)
T ss_dssp             HH-HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCGG-GHHHHHHHEEEEEEEEECCCTTCSCCCSCHHHHHHHT
T ss_pred             HH-HHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCch-HHHHHHHhccCCCEEEEEeccCCCccCCChhHHHHhC
Confidence            76 789999888876643   3444443  799999999997 688999999999999999986543 45666 667789


Q ss_pred             CcEEEEeeccCH--H-------H-HHHHHHHHHhC---CcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          154 EKIVGGSLIGGL--K-------E-TQEMIDFAAKH---NIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       154 ~~~i~~~~~~~~--~-------~-~~~~~~~~~~~---~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      ++++.|+.....  .       . ++++++++++|   .+++.+ ++|+++++++||+.+.+++..+|+|+++.
T Consensus       280 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  353 (354)
T 2j8z_A          280 RGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELP  353 (354)
T ss_dssp             TCEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEECC
T ss_pred             CCEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence            999999876432  1       1 23577888899   888877 89999999999999998887899999874

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.98  E-value=4.9e-32  Score=216.16  Aligned_cols=210  Identities=13%  Similarity=0.189  Sum_probs=175.3

Q ss_pred             cccCcceeeCCC-----------CCCcccccccchhhhhhhhhhHhccCCCCC-CEEEEEcC-chHHHHHHHHHHHCCCe
Q 027668            2 VADEHFVVRIPE-----------GAPLDATAPLLCAGITVYSPLRFYGLDKPG-MHVGVVGL-GGLGHVAVKFAKAMGVK   68 (220)
Q Consensus         2 ~~~~~~~~~~p~-----------~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~vlI~G~-g~~G~~~~~~~~~~g~~   68 (220)
                      ++|++.++++|+           ++++++||++++.+.|||+++.+...+++| ++|||+|+ |++|++++|+|+.+|++
T Consensus       115 ~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~  194 (364)
T 1gu7_A          115 LGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFN  194 (364)
T ss_dssp             EEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCE
T ss_pred             ecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCE
Confidence            578899999998           899999999999999999999887678999 99999997 99999999999999999


Q ss_pred             EEEEeCCccc---HHHHHHHcCCcEEecCCC---H---HHHHHhc----CCccEEEEcCCCcccHHHHHhccccCCEEEE
Q 027668           69 VTVISTSPSK---KSEAVERLGADSFLVSRD---Q---DEMQAAM----GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus        69 v~~~~~~~~~---~~~~~~~~g~~~v~~~~~---~---~~~~~~~----~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~  135 (220)
                      +++++++.++   +.+.++++|++.++++.+   .   +.+++.+    +++|+||||+|... ...++++++++|+++.
T Consensus       195 vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~-~~~~~~~l~~~G~~v~  273 (364)
T 1gu7_A          195 SISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNNGLMLT  273 (364)
T ss_dssp             EEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTTCEEEE
T ss_pred             EEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchh-HHHHHHHhccCCEEEE
Confidence            9988876654   223347899999988753   2   3455554    38999999999875 4588999999999999


Q ss_pred             ecCCCC-CcccCccccccCCcEEEEeeccC---------HHHHHHHHHHHHhCCcceeE-EEEecc---cHHHHHHHHHc
Q 027668          136 LGAPEK-PLELPAFPLLTGEKIVGGSLIGG---------LKETQEMIDFAAKHNIRADI-EVIPAD---YVNTAMERLAK  201 (220)
Q Consensus       136 ~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~i-~~~~~~---~i~~a~~~~~~  201 (220)
                      +|.... ..+++...++.+++++.++....         .++++++++++++|.+++.. .+++++   ++++||+.+.+
T Consensus       274 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~~  353 (364)
T 1gu7_A          274 YGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVA  353 (364)
T ss_dssp             CCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHHHHHHH
T ss_pred             ecCCCCCCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHHHHHHHh
Confidence            997653 35566666778999999986643         35689999999999999865 677664   99999999998


Q ss_pred             CCcceEEEEEe
Q 027668          202 ADVRYRFVIDV  212 (220)
Q Consensus       202 ~~~~~k~v~~~  212 (220)
                      ++..+|+|+++
T Consensus       354 ~~~~gKvvv~~  364 (364)
T 1gu7_A          354 NSKDGKQLITY  364 (364)
T ss_dssp             TGGGSCEEEEC
T ss_pred             CCCCceEEEeC
Confidence            87789999874

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.98  E-value=2.5e-31  Score=210.93  Aligned_cols=208  Identities=22%  Similarity=0.304  Sum_probs=174.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++.+.|||+++.....+++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       130 ~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~  209 (351)
T 1yb5_A          130 LAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQK  209 (351)
T ss_dssp             EEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             EECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHH
Confidence            57889999999999999999999999999999987677899999999997 99999999999999999999999988877


Q ss_pred             HHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCc
Q 027668           81 EAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEK  155 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      .+ +++|++.+++..+.+   .+.+.++  ++|++|||+|.. .+..++++++++|+++.+|.. +..+++...++.+++
T Consensus       210 ~~-~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~~-~~~~~~~~l~~~G~iv~~g~~-~~~~~~~~~~~~~~~  286 (351)
T 1yb5_A          210 IV-LQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANV-NLSKDLSLLSHGGRVIVVGSR-GTIEINPRDTMAKES  286 (351)
T ss_dssp             HH-HHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHHH-HHHHHHHHEEEEEEEEECCCC-SCEEECTHHHHTTTC
T ss_pred             HH-HHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCChH-HHHHHHHhccCCCEEEEEecC-CCCccCHHHHHhCCc
Confidence            55 789999888877643   3344443  799999999986 588999999999999999964 334566666788999


Q ss_pred             EEEEeec--cCHHHHHH----HHHHHHhCCcceeE-EEEecccHHHHHHH-HHcCCcceEEEEEe
Q 027668          156 IVGGSLI--GGLKETQE----MIDFAAKHNIRADI-EVIPADYVNTAMER-LAKADVRYRFVIDV  212 (220)
Q Consensus       156 ~i~~~~~--~~~~~~~~----~~~~~~~~~~~~~i-~~~~~~~i~~a~~~-~~~~~~~~k~v~~~  212 (220)
                      ++.|+..  .+.+++++    +.+++++|.+++.+ ++|+++++++||+. +..+...+|+|+++
T Consensus       287 ~i~g~~~~~~~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          287 SIIGVTLFSSTKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             EEEECCGGGCCHHHHHHHHHHHHHHHHHTCCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             EEEEEEeecCCHHHHHHHHHHHHHHHHCCCccCccceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            9999853  34455544    55577889998887 89999999999998 56666678999864

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.98  E-value=3.6e-32  Score=215.04  Aligned_cols=211  Identities=13%  Similarity=0.149  Sum_probs=172.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++.+.|||+++.+...+++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       104 ~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~  183 (340)
T 3gms_A          104 KTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE  183 (340)
T ss_dssp             EEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHH
T ss_pred             EcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence            57889999999999999999999999999999977777999999999998 69999999999999999999999988877


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccc-cCC
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL-TGE  154 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~-~~~  154 (220)
                      .+ +++|++.++++.+.   +.+.+.++  ++|++|||+|... ....+++++++|+++.+|..... .++...+. ...
T Consensus       184 ~~-~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~-~~~~~~~~~~~~  260 (340)
T 3gms_A          184 EL-LRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPD-GNELAFSLRPNGHFLTIGLLSGI-QVNWAEIVTKAK  260 (340)
T ss_dssp             HH-HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTSC-CCCHHHHHHTSC
T ss_pred             HH-HhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHHhcCCCEEEEEeecCCC-CCCHHHhhhccc
Confidence            66 68999999987764   34455554  8999999999884 56677999999999999986542 33332222 234


Q ss_pred             cEEEEeec----------cCHHHHHHHHHHHHhCCccee-E-EEEecccHHHHHHHHHcCCc-ceEEEEEeCCc
Q 027668          155 KIVGGSLI----------GGLKETQEMIDFAAKHNIRAD-I-EVIPADYVNTAMERLAKADV-RYRFVIDVANT  215 (220)
Q Consensus       155 ~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~-i-~~~~~~~i~~a~~~~~~~~~-~~k~v~~~~~~  215 (220)
                      +++..+..          ...++++++++++++|.+++. + ++|+++++++||+.+.+++. .||+++++.++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~~  334 (340)
T 3gms_A          261 VHANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKAAVDVVQSAEKTKGKVFLTSYEG  334 (340)
T ss_dssp             CEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCCEEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC--
T ss_pred             ceEEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCccccccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEecc
Confidence            44444332          124678999999999999974 5 89999999999999999874 59999999776

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.98  E-value=3.3e-32  Score=216.57  Aligned_cols=205  Identities=19%  Similarity=0.199  Sum_probs=174.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCC------CEEEEEcCchHHHHH-HHHH-HHCCCe-EEEE
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG------MHVGVVGLGGLGHVA-VKFA-KAMGVK-VTVI   72 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~------~~vlI~G~g~~G~~~-~~~~-~~~g~~-v~~~   72 (220)
                      ++|++.++++|++++ +. |+++..+.|||++++.. .+++|      ++|||+|+|++|+++ +|+| +.+|++ |+++
T Consensus       129 ~v~~~~~~~iP~~~~-~~-aal~~~~~ta~~al~~~-~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~  205 (357)
T 2b5w_A          129 TSPEKYLVRIPRSQA-EL-GFLIEPISITEKALEHA-YASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCL  205 (357)
T ss_dssp             EEEGGGEEECCGGGS-TT-GGGHHHHHHHHHHHHHH-HHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEE
T ss_pred             EEchHHeEECCCCcc-hh-hhhhchHHHHHHHHHhc-CCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            578899999999999 55 55788999999999654 47999      999999999999999 9999 999996 9999


Q ss_pred             eCCcc---cHHHHHHHcCCcEEecCCCHHH--HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC-CCcccC
Q 027668           73 STSPS---KKSEAVERLGADSFLVSRDQDE--MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE-KPLELP  146 (220)
Q Consensus        73 ~~~~~---~~~~~~~~~g~~~v~~~~~~~~--~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~-~~~~~~  146 (220)
                      +++++   +++.+ +++|++.+ ++.+.+.  +.+..+++|+||||+|....++.++++++++|+++.+|... ...+++
T Consensus       206 ~~~~~~~~~~~~~-~~lGa~~v-~~~~~~~~~i~~~~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~  283 (357)
T 2b5w_A          206 GRRDRPDPTIDII-EELDATYV-DSRQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVD  283 (357)
T ss_dssp             ECCCSSCHHHHHH-HHTTCEEE-ETTTSCGGGHHHHSCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCC
T ss_pred             eCCcccHHHHHHH-HHcCCccc-CCCccCHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceec
Confidence            99887   77666 78999988 7765321  55553389999999998766899999999999999999876 455666


Q ss_pred             cccc----ccCCcEEEEeeccCHHHHHHHHHHHHhC--C-cceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          147 AFPL----LTGEKIVGGSLIGGLKETQEMIDFAAKH--N-IRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       147 ~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~-~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      ...+    +.+++++.|+...+.++++++++++++|  . +.+.+ ++|+++++++||+.+   ...+|+|+++++
T Consensus       284 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~A~~~~---~~~gKvvi~~~~  356 (357)
T 2b5w_A          284 AGAFHREMVLHNKALVGSVNSHVEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDD---DTTIKTAIEFST  356 (357)
T ss_dssp             HHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHHHHSCHHHHHHHEEEEEEGGGGGGGGCCS---TTCCEEEEECCC
T ss_pred             HHHHhHHHHhCCeEEEEeccCCHHHHHHHHHHHHhCchhhhhhhcceeecHHHHHHHHHHh---CCCceEEEEecC
Confidence            6666    7899999999888889999999999999  8 57777 899999999999988   346899999853

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.98  E-value=3e-32  Score=216.20  Aligned_cols=206  Identities=13%  Similarity=0.146  Sum_probs=170.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCC-CEEEEEc-CchHHHHHHHHHHHCCCeEEEEeCCcccH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPG-MHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~vlI~G-~g~~G~~~~~~~~~~g~~v~~~~~~~~~~   79 (220)
                      ++|++.++++|+++++++||++++.+.|||++++...  ++| +++||+| +|++|++++|+++..|++|++++++++++
T Consensus       125 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~--~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~  202 (349)
T 3pi7_A          125 VAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVK--QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQI  202 (349)
T ss_dssp             EEEGGGEEECCTTCCC--GGGSSHHHHHHHHHHHHHH--HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGH
T ss_pred             eechHHeEECCCCCCHHHHhhccccHHHHHHHHHHHh--hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            5788999999999999999999999999998776655  566 7888885 59999999999999999999999998887


Q ss_pred             HHHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCc-ccccc
Q 027668           80 SEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPA-FPLLT  152 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~-~~~~~  152 (220)
                      +.+ +++|++.++++.+.+   .+++.++  ++|++|||+|... +..++++++++|+++.+|.... ...++. ..++.
T Consensus       203 ~~~-~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~  280 (349)
T 3pi7_A          203 ALL-KDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGPL-ASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIF  280 (349)
T ss_dssp             HHH-HHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCHHH-HHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHH
T ss_pred             HHH-HHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCChh-HHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhc
Confidence            766 789999999887643   4444443  8999999999874 7889999999999999997653 355666 67788


Q ss_pred             CCcEEEEeeccC---------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          153 GEKIVGGSLIGG---------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       153 ~~~~i~~~~~~~---------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      +++++.++...+         .+.++++++++++|.+++.+ ++|+++++++||+.+. +...+|+|+++
T Consensus       281 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~-~~~~gKvvl~p  349 (349)
T 3pi7_A          281 QHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRWSTDVTAVVPLAEAIAWVPAEL-TKPNGKVFIRP  349 (349)
T ss_dssp             SCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSCCC-CCEEEEHHHHHHHHHHHH-TSSSSCEEEEC
T ss_pred             cccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCcccccceEEcHHHHHHHHHHHh-CCCCceEEEeC
Confidence            999999987643         45678888899999998887 9999999999999544 45668999874

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.98  E-value=1.3e-31  Score=210.94  Aligned_cols=209  Identities=18%  Similarity=0.239  Sum_probs=168.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhc--cCCCCCC-EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKPGM-HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~-~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      ++|++.++++|+++++++||++++.+.|||.++...  ..+++|+ +|||+|+ |++|++++|+++.+|++|++++++++
T Consensus       106 ~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~  185 (328)
T 1xa0_A          106 RLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAA  185 (328)
T ss_dssp             EECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             EechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            578899999999999999999999999999887532  4578886 9999997 99999999999999999999999988


Q ss_pred             cHHHHHHHcCCcEEecCCCH--HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccC
Q 027668           78 KKSEAVERLGADSFLVSRDQ--DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTG  153 (220)
Q Consensus        78 ~~~~~~~~~g~~~v~~~~~~--~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~  153 (220)
                      +++.+ +++|++.++++.+.  +.+++..+ ++|++|||+|.. .+..++++++++|+++.+|...+ ..+++...++.+
T Consensus       186 ~~~~~-~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~  263 (328)
T 1xa0_A          186 EHDYL-RVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR-TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILR  263 (328)
T ss_dssp             CHHHH-HHTTCSEEEECC---------CCSCCEEEEEECSTTT-THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHT
T ss_pred             HHHHH-HHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcHH-HHHHHHHhhccCCEEEEEeecCCCCCCCchhhhhhc
Confidence            87776 78999999887754  22334433 899999999986 79999999999999999998654 345555667789


Q ss_pred             CcEEEEeec--cCH----HHHHHHHHHHHhCCcceeEEEEecccHHHHHHHHHcCCcceEEEEEeC
Q 027668          154 EKIVGGSLI--GGL----KETQEMIDFAAKHNIRADIEVIPADYVNTAMERLAKADVRYRFVIDVA  213 (220)
Q Consensus       154 ~~~i~~~~~--~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~i~~a~~~~~~~~~~~k~v~~~~  213 (220)
                      ++++.|+..  ...    +.++.+.++++++ +++..++|+++++++||+.+.+++..+|+|++++
T Consensus       264 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g-l~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  328 (328)
T 1xa0_A          264 GVSLLGIDSVYCPMDLRLRIWERLAGDLKPD-LERIAQEISLAELPQALKRILRGELRGRTVVRLA  328 (328)
T ss_dssp             TCEEEECCSSSCCHHHHHHHHHHHHTTTCCC-HHHHEEEEEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred             CceEEEEecccCCHHHHHHHHHHHHHHHHcC-CceeeeEeCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence            999999742  232    2355566666667 6664599999999999999998887899999863

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.97  E-value=1.4e-31  Score=216.12  Aligned_cols=209  Identities=15%  Similarity=0.189  Sum_probs=176.2

Q ss_pred             cccCcceeeCCCCCCc------ccccccchhhhhhhhhhHhc-cCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEe
Q 027668            2 VADEHFVVRIPEGAPL------DATAPLLCAGITVYSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVIS   73 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~------~~aa~~~~~~~ta~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~   73 (220)
                      ++|++.++++|++++.      .++|+++..+.|||+++... ..+++|++|||+|+|++|++++|+|+.+|+ +|++++
T Consensus       166 ~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~  245 (404)
T 3ip1_A          166 KVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSE  245 (404)
T ss_dssp             EEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             EechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence            5788999999998864      45788999999999998644 368999999999999999999999999999 899998


Q ss_pred             CCcccHHHHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCc-ccHHHHHhcc----ccCCEEEEecCCCCCc
Q 027668           74 TSPSKKSEAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAV-HPLMPLIGLL----KSQGKLVLLGAPEKPL  143 (220)
Q Consensus        74 ~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~-~~~~~~~~~l----~~~g~iv~~g~~~~~~  143 (220)
                      .++++++.+ +++|++.++++.+.   +.+.+.++  ++|+||||+|.. ..+..+++++    +++|+++.+|......
T Consensus       246 ~~~~~~~~~-~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~  324 (404)
T 3ip1_A          246 PSEVRRNLA-KELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKI  324 (404)
T ss_dssp             SCHHHHHHH-HHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCE
T ss_pred             CCHHHHHHH-HHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCC
Confidence            888877655 89999999988764   45556654  799999999997 2456666666    9999999999987767


Q ss_pred             ccCccccccCCcEEEEeeccC-HHHHHHHHHHHHhCCcce--eE-EEEecccHHHHHHHHHcCCcceEEEEEeCCcc
Q 027668          144 ELPAFPLLTGEKIVGGSLIGG-LKETQEMIDFAAKHNIRA--DI-EVIPADYVNTAMERLAKADVRYRFVIDVANTM  216 (220)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~--~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~~  216 (220)
                      +++...++.+++++.|+.... ..+++++++++++| +++  .+ ++|+++++++||+.+.    .||+|++++++.
T Consensus       325 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~----~GKvvl~~~~~~  396 (404)
T 3ip1_A          325 PLTGEVFQVRRAQIVGSQGHSGHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ----TDKSLVKVTMLN  396 (404)
T ss_dssp             EECHHHHHHTTCEEEECCCCCSTTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT----TCTTCSCEEEEC
T ss_pred             cccHHHHhccceEEEEecCCCchHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh----CCcEEEecCCCC
Confidence            788888889999999998654 67899999999999 764  35 8999999999999987    478888886653

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.97  E-value=1.4e-30  Score=207.32  Aligned_cols=214  Identities=13%  Similarity=0.150  Sum_probs=178.4

Q ss_pred             CcccCcceeeCCCCC-----CcccccccchhhhhhhhhhHhccCCCCC--CEEEEEcC-chHHHHHHHHHHHCCC-eEEE
Q 027668            1 MVADEHFVVRIPEGA-----PLDATAPLLCAGITVYSPLRFYGLDKPG--MHVGVVGL-GGLGHVAVKFAKAMGV-KVTV   71 (220)
Q Consensus         1 ~~~~~~~~~~~p~~~-----~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~G~-g~~G~~~~~~~~~~g~-~v~~   71 (220)
                      +++|++.++++|+++     +++ +++++..+.|||+++.+...+++|  ++|||+|+ |++|++++|+++..|+ +|++
T Consensus       113 ~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~  191 (357)
T 2zb4_A          113 VILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVG  191 (357)
T ss_dssp             EEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEE
Confidence            357889999999999     555 678999999999999666678999  99999997 9999999999999999 9999


Q ss_pred             EeCCcccHHHHHHHcCCcEEecCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccC
Q 027668           72 ISTSPSKKSEAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELP  146 (220)
Q Consensus        72 ~~~~~~~~~~~~~~~g~~~v~~~~~~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~  146 (220)
                      +++++++++.+.+++|++.+++..+.   +.+.+.++ ++|++|||+|.. .++.++++++++|+++.+|..... ..++
T Consensus       192 ~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~  270 (357)
T 2zb4_A          192 ICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDNVGGN-ISDTVISQMNENSHIILCGQISQYNKDVP  270 (357)
T ss_dssp             EESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEESCCHH-HHHHHHHTEEEEEEEEECCCGGGTTSCCC
T ss_pred             EeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEECCCHH-HHHHHHHHhccCcEEEEECCccccccCcc
Confidence            99998887777555999988887653   34444444 799999999974 688999999999999999976431 2222


Q ss_pred             c---------cccccCCcEEEEeeccC-----HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEE
Q 027668          147 A---------FPLLTGEKIVGGSLIGG-----LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVID  211 (220)
Q Consensus       147 ~---------~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~  211 (220)
                      .         ..++.+++++.++....     .+.++++++++++|.+++.+ .+|+++++++||+.+.+++..+|+|++
T Consensus       271 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvi~  350 (357)
T 2zb4_A          271 YPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVC  350 (357)
T ss_dssp             SSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCCEEEEECGGGHHHHHHHHHTTCCSBEEEEE
T ss_pred             ccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCccceecCHHHHHHHHHHHHcCCCCceEEEE
Confidence            1         34567899999987643     56789999999999999876 789999999999999988878999999


Q ss_pred             eCCcc
Q 027668          212 VANTM  216 (220)
Q Consensus       212 ~~~~~  216 (220)
                      ++++.
T Consensus       351 ~~~~~  355 (357)
T 2zb4_A          351 ISEEI  355 (357)
T ss_dssp             CCCCC
T ss_pred             Eeccc
Confidence            97653

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.97  E-value=1.9e-30  Score=207.29  Aligned_cols=213  Identities=13%  Similarity=0.108  Sum_probs=171.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhc-cCC-----------CCCCEEEEEcC-chHHHHHHHHHHHCCCe
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY-GLD-----------KPGMHVGVVGL-GGLGHVAVKFAKAMGVK   68 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~-~~~-----------~~~~~vlI~G~-g~~G~~~~~~~~~~g~~   68 (220)
                      ++|++.++++|+++++++||++++++.|||+++... .++           ++|++|||+|+ |++|++++|+++..|++
T Consensus       112 ~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~  191 (371)
T 3gqv_A          112 VTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYI  191 (371)
T ss_dssp             ECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCE
T ss_pred             EEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCE
Confidence            578999999999999999999999999999999766 332           89999999998 99999999999999999


Q ss_pred             EEEEeCCcccHHHHHHHcCCcEEecCCCHH---HHHHhcC-CccEEEEcCCCcccHHHHHhcc-ccCCEEEEecCCCC--
Q 027668           69 VTVISTSPSKKSEAVERLGADSFLVSRDQD---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLL-KSQGKLVLLGAPEK--  141 (220)
Q Consensus        69 v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l-~~~g~iv~~g~~~~--  141 (220)
                      |+++. ++++++ +++++|++.++++.+.+   .+++.++ ++|++|||+|....++.+++++ +++|+++.+|....  
T Consensus       192 Vi~~~-~~~~~~-~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~  269 (371)
T 3gqv_A          192 PIATC-SPHNFD-LAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHA  269 (371)
T ss_dssp             EEEEE-CGGGHH-HHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC--
T ss_pred             EEEEe-CHHHHH-HHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCcccc
Confidence            99887 566665 45899999999987753   4555554 7999999999976788999999 69999999996542  


Q ss_pred             --C--cccC---ccccccCCcEEEEeecc--CH-------HHHHHHHHHHHhCCcceeE---EEEecccHHHHHHHHHcC
Q 027668          142 --P--LELP---AFPLLTGEKIVGGSLIG--GL-------KETQEMIDFAAKHNIRADI---EVIPADYVNTAMERLAKA  202 (220)
Q Consensus       142 --~--~~~~---~~~~~~~~~~i~~~~~~--~~-------~~~~~~~~~~~~~~~~~~i---~~~~~~~i~~a~~~~~~~  202 (220)
                        .  .+.+   ...++.+++++.|+...  ..       +.++++++++++|.+++..   +.|+++++++||+.+.++
T Consensus       270 ~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g  349 (371)
T 3gqv_A          270 ATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKG  349 (371)
T ss_dssp             -CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTT
T ss_pred             ccccccceeeeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcC
Confidence              1  1111   23466788888877443  22       1245788999999999863   569999999999999998


Q ss_pred             Ccce-EEEEEeCCcc
Q 027668          203 DVRY-RFVIDVANTM  216 (220)
Q Consensus       203 ~~~~-k~v~~~~~~~  216 (220)
                      +..+ |+|+.+++..
T Consensus       350 ~~~Gkkvvv~~~~~~  364 (371)
T 3gqv_A          350 ELSGEKLVVRLEGPL  364 (371)
T ss_dssp             CCSSCEEEEEECCC-
T ss_pred             CCceEEEEEEeCCcc
Confidence            8776 7788876663

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.97  E-value=5.2e-31  Score=210.31  Aligned_cols=208  Identities=19%  Similarity=0.221  Sum_probs=173.2

Q ss_pred             CcccCcceeeCCCCCCcccccccchhhhhhhhhhH--h--ccCCC--C-------CCEEEEEcCchHHHHHHHHHHHCCC
Q 027668            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR--F--YGLDK--P-------GMHVGVVGLGGLGHVAVKFAKAMGV   67 (220)
Q Consensus         1 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~--~--~~~~~--~-------~~~vlI~G~g~~G~~~~~~~~~~g~   67 (220)
                      +++|++.++++|++++ ++|+ ++..+.|||+++.  .  ...++  +       |++|||+|+|++|++++|+++.+|+
T Consensus       128 ~~v~~~~~~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga  205 (366)
T 2cdc_A          128 WYDDPKYLVKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL  205 (366)
T ss_dssp             EEECGGGEEEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             EEechHHeEECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC
Confidence            3578899999999999 7765 7788899999998  3  44578  8       9999999999999999999999999


Q ss_pred             eEEEEeCCc---ccHHHHHHHcCCcEEecCCC--HHHHHHhcCCccEEEEcCCCcccH-HHHHhccccCCEEEEecCCCC
Q 027668           68 KVTVISTSP---SKKSEAVERLGADSFLVSRD--QDEMQAAMGTMDGIIDTVSAVHPL-MPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus        68 ~v~~~~~~~---~~~~~~~~~~g~~~v~~~~~--~~~~~~~~~~~d~vid~~g~~~~~-~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      +|+++++++   ++++.+ +++|++.+ + .+  .+.+.+..+++|++|||+|....+ +.++++++++|+++.+|....
T Consensus       206 ~Vi~~~~~~~~~~~~~~~-~~~ga~~v-~-~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~  282 (366)
T 2cdc_A          206 EVWMANRREPTEVEQTVI-EETKTNYY-N-SSNGYDKLKDSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTS  282 (366)
T ss_dssp             EEEEEESSCCCHHHHHHH-HHHTCEEE-E-CTTCSHHHHHHHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCS
T ss_pred             EEEEEeCCccchHHHHHH-HHhCCcee-c-hHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCC
Confidence            999999988   776555 78999888 6 44  123333125899999999987667 899999999999999998765


Q ss_pred             C-cccCccc---cccCCcEEEEeeccCHHHHHHHHHHHHhCC------cceeE-EEEecccHHHHHHHH-HcCCcceEEE
Q 027668          142 P-LELPAFP---LLTGEKIVGGSLIGGLKETQEMIDFAAKHN------IRADI-EVIPADYVNTAMERL-AKADVRYRFV  209 (220)
Q Consensus       142 ~-~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------~~~~i-~~~~~~~i~~a~~~~-~~~~~~~k~v  209 (220)
                      . .+++...   ++.+++++.|+..++.++++++++++++|.      +.+.+ ++|+++++++||+.+ .++...+|+|
T Consensus       283 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~gKvv  362 (366)
T 2cdc_A          283 GSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIR  362 (366)
T ss_dssp             CEEEEEHHHHHHHHHTTCEEEECCCCCHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCCEEE
T ss_pred             CccccChhhhHHHHhcCcEEEEecCCCHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCceEEE
Confidence            4 5566666   788999999998888899999999999998      45666 899999999999994 3455678999


Q ss_pred             EEeC
Q 027668          210 IDVA  213 (220)
Q Consensus       210 ~~~~  213 (220)
                      ++++
T Consensus       363 i~~~  366 (366)
T 2cdc_A          363 ILWE  366 (366)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9864

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.97  E-value=4.7e-32  Score=213.57  Aligned_cols=209  Identities=16%  Similarity=0.229  Sum_probs=170.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhc--cCCCCCC-EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFY--GLDKPGM-HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~-~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      ++|++.++++|+++++++||++++.+.|||.++...  ..+++|+ +|||+|+ |++|++++|+++.+|++|++++++++
T Consensus       107 ~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~  186 (330)
T 1tt7_A          107 SVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNRE  186 (330)
T ss_dssp             EECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSS
T ss_pred             EecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            578899999999999999999999999999887532  4578886 9999997 99999999999999999999999988


Q ss_pred             cHHHHHHHcCCcEEecCCCHH--HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccC
Q 027668           78 KKSEAVERLGADSFLVSRDQD--EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTG  153 (220)
Q Consensus        78 ~~~~~~~~~g~~~v~~~~~~~--~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~  153 (220)
                      +++.+ +++|++.++++.+.+  .+++..+ ++|++|||+|.. .+..++++++++|+++.+|...+ ..+++...++.+
T Consensus       187 ~~~~~-~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~  264 (330)
T 1tt7_A          187 AADYL-KQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGK-QLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILR  264 (330)
T ss_dssp             THHHH-HHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTH-HHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTS
T ss_pred             HHHHH-HHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcHH-HHHHHHHhhcCCCEEEEEecCCCCccCcchHHHHhc
Confidence            87666 789999988764321  1122223 799999999995 78999999999999999998654 345565667789


Q ss_pred             CcEEEEeec--cCH----HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          154 EKIVGGSLI--GGL----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 ~~~i~~~~~--~~~----~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ++++.|+..  ...    +.++.+.+++.+|.+++.+ ++|+++++++||+.+.+++..+|+|+++
T Consensus       265 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          265 GVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             CCEEEECCSSSCCHHHHHHHHHHTTTTSCCSCSTTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             CeEEEEEeccccCHHHHHHHHHHHHHHHhcCCcccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            999999843  222    2355566677778888877 9999999999999998888789999863

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.97  E-value=5.9e-31  Score=207.07  Aligned_cols=210  Identities=20%  Similarity=0.224  Sum_probs=175.3

Q ss_pred             CcccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccH
Q 027668            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         1 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~   79 (220)
                      +++|++.++++|+++++++||++++.+.|||+++.....+++|++|||+|+ |++|++++|+++..|++|++++++++++
T Consensus        99 ~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~  178 (327)
T 1qor_A           99 HNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA  178 (327)
T ss_dssp             EEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHH
T ss_pred             EEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence            357889999999999999999999999999999986667899999999995 9999999999999999999999998877


Q ss_pred             HHHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccC
Q 027668           80 SEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTG  153 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~  153 (220)
                      +.+ +++|++.+++..+.+   .+.+.++  ++|++|||+| ...++.++++++++|+++.+|..... ..++...++.+
T Consensus       179 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g-~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~  256 (327)
T 1qor_A          179 QSA-LKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG-RDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQK  256 (327)
T ss_dssp             HHH-HHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC-GGGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHT
T ss_pred             HHH-HHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCc-hHHHHHHHHHhcCCCEEEEEecCCCCCCccCHHHHhhc
Confidence            666 678998888876543   3444443  7999999999 45789999999999999999986543 35666666667


Q ss_pred             -CcEEEEeec----cC----HHHHHHHHHHHHhCCcceeE---EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          154 -EKIVGGSLI----GG----LKETQEMIDFAAKHNIRADI---EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       154 -~~~i~~~~~----~~----~~~~~~~~~~~~~~~~~~~i---~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                       ++++.+...    .+    .+.++++++++++|.+++.+   ++|+++++++||+.+.+++..+|+++.+
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          257 GSLYVTRPSLQGYITTREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             TSCEEECCCHHHHCCSHHHHHHHHHHHHHHHHTTSSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred             cceEEEccchhhhcCCHHHHHHHHHHHHHHHHCCCcccccccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence             787775432    11    34578999999999998865   5999999999999999888789999864

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=207.13  Aligned_cols=209  Identities=21%  Similarity=0.243  Sum_probs=168.6

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccC----CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGL----DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~----~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ++|++.++++|+++++++||++++.+.|||+++.....    +++|++|||+|+ |++|++++|+++..|++|++++ ++
T Consensus       139 ~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~  217 (375)
T 2vn8_A          139 VVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQ  217 (375)
T ss_dssp             EEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CG
T ss_pred             EEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-Ch
Confidence            57889999999999999999999999999999976666    899999999995 9999999999999999999888 55


Q ss_pred             ccHHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEEcCCCc-ccHHHHHhccccCCEEEEecCCCCC-c-c--cCc--
Q 027668           77 SKKSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLGAPEKP-L-E--LPA--  147 (220)
Q Consensus        77 ~~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~-~~~~~~~~~l~~~g~iv~~g~~~~~-~-~--~~~--  147 (220)
                      ++++.+ +++|++.++++.+.+..+++.  +++|++|||+|.. ..+..++++++++|+++.+|..... . .  ++.  
T Consensus       218 ~~~~~~-~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~  296 (375)
T 2vn8_A          218 DASELV-RKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGM  296 (375)
T ss_dssp             GGHHHH-HHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHH
T ss_pred             HHHHHH-HHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchh
Confidence            666555 899999999887654444333  4899999999987 3457889999999999999875421 1 0  110  


Q ss_pred             ----ccccc-------CCcEEEEeec-cCHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          148 ----FPLLT-------GEKIVGGSLI-GGLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       148 ----~~~~~-------~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                          ..++.       ++..+.+... ...+.++++++++++|.+++.+ ++|+++++++||+.+.+++..+|+|+++
T Consensus       297 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          297 LQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVERGHARGKTVINV  374 (375)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEECCCCCCHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHHHCCCSSEEEEEC
T ss_pred             heeehhhccccccccccCcceEEEEeCCCHHHHHHHHHHHHCCCcccCcCeEECHHHHHHHHHHHHcCCCCCeEEEEe
Confidence                01111       4555554432 3456789999999999999887 8999999999999999888789999976

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.97  E-value=3e-30  Score=204.48  Aligned_cols=211  Identities=17%  Similarity=0.133  Sum_probs=173.9

Q ss_pred             cccCcc--eeeCCC---CCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC
Q 027668            2 VADEHF--VVRIPE---GAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus         2 ~~~~~~--~~~~p~---~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      +++++.  ++++|+   +++++ +|++++.+.|||+++.....+++|++|||+|+ |++|++++|+++..|++|++++++
T Consensus       111 ~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~  189 (345)
T 2j3h_A          111 VITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGS  189 (345)
T ss_dssp             EECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            355555  899996   35555 67889999999999977667899999999997 999999999999999999999999


Q ss_pred             cccHHHHHHHcCCcEEecCCC----HHHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC------Ccc
Q 027668           76 PSKKSEAVERLGADSFLVSRD----QDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK------PLE  144 (220)
Q Consensus        76 ~~~~~~~~~~~g~~~v~~~~~----~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~------~~~  144 (220)
                      +++++.+.+++|++.+++..+    .+.+++.++ ++|++|||+|.. .+..++++++++|+++.+|....      ...
T Consensus       190 ~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~  268 (345)
T 2j3h_A          190 KEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGK-MLDAVLVNMNMHGRIAVCGMISQYNLENQEGV  268 (345)
T ss_dssp             HHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEECCCGGGTTCSSCCCB
T ss_pred             HHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCCHH-HHHHHHHHHhcCCEEEEEccccccccCCcccc
Confidence            888777744799988888654    234555444 899999999985 78999999999999999987542      234


Q ss_pred             cCccccccCCcEEEEeeccCH-----HHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCC
Q 027668          145 LPAFPLLTGEKIVGGSLIGGL-----KETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVAN  214 (220)
Q Consensus       145 ~~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~  214 (220)
                      ++...++.+++++.|+..++.     +.++++++++++|.+++.+ ++|+++++++||+.+.+++..+|+|+.+++
T Consensus       269 ~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  344 (345)
T 2j3h_A          269 HNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVVAR  344 (345)
T ss_dssp             SCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCCEEEEESGGGSHHHHHHHHTTCCSSEEEEESSC
T ss_pred             ccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCcCcccccCCHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            555567788999999765431     3388999999999999877 689999999999999998888999999864

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.97  E-value=1.7e-29  Score=199.21  Aligned_cols=209  Identities=18%  Similarity=0.182  Sum_probs=173.3

Q ss_pred             cccCcceeeCCCC----CCccc-ccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC
Q 027668            2 VADEHFVVRIPEG----APLDA-TAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus         2 ~~~~~~~~~~p~~----~~~~~-aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      ++|++.++++|++    +++++ +|++++.+.|||+++.+...+++|++|||+|+ |++|++++|+++..|++|++++++
T Consensus       100 ~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~  179 (333)
T 1v3u_A          100 ISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGS  179 (333)
T ss_dssp             EESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence            5788999999997    88887 47899999999999977767899999999997 999999999999999999999998


Q ss_pred             cccHHHHHHHcCCcEEecCCC-H---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC------c-
Q 027668           76 PSKKSEAVERLGADSFLVSRD-Q---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP------L-  143 (220)
Q Consensus        76 ~~~~~~~~~~~g~~~v~~~~~-~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~------~-  143 (220)
                      +++++.+ +++|++.+++..+ .   +.+.+..+ ++|++||++|.. .+..++++++++|+++.+|.....      . 
T Consensus       180 ~~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~  257 (333)
T 1v3u_A          180 DEKIAYL-KQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGE-FLNTVLSQMKDFGKIAICGAISVYNRMDQLPP  257 (333)
T ss_dssp             HHHHHHH-HHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEECCCCC-------CCB
T ss_pred             HHHHHHH-HhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCChH-HHHHHHHHHhcCCEEEEEeccccccCCCCCCC
Confidence            8887777 7899988888765 3   33444443 799999999986 588999999999999999976431      1 


Q ss_pred             ccCccccccCCcEEEEeeccC------HHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          144 ELPAFPLLTGEKIVGGSLIGG------LKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ..+...++.+++++.|+..+.      .+.++++++++++|.+++.. .+++++++++||+.+.+++..+|+|+++
T Consensus       258 ~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          258 GPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             CCCHHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCEEEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             CcCHHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCccccccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            124445778999999986543      35678899999999999876 6789999999999999888789999864

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.97  E-value=5.4e-30  Score=221.20  Aligned_cols=209  Identities=19%  Similarity=0.213  Sum_probs=173.7

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|+++++++||++++.++|||+++....++++|++|||+|+ |++|++++|+++.+|++|++++.++ +.+
T Consensus       305 ~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~-k~~  383 (795)
T 3slk_A          305 VADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED-KWQ  383 (795)
T ss_dssp             EEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG-GGG
T ss_pred             EeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH-Hhh
Confidence            57889999999999999999999999999999988888999999999996 9999999999999999999998765 544


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCc
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEK  155 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~  155 (220)
                      .+ + +|+++++++.+.   +.+.+.++  |+|+||||+|+. .+..++++++++|+++.+|........... ...++.
T Consensus       384 ~l-~-lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~gg~-~~~~~l~~l~~~Gr~v~iG~~~~~~~~~~~-~~~~~~  459 (795)
T 3slk_A          384 AV-E-LSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAGE-FADASLRMLPRGGRFLELGKTDVRDPVEVA-DAHPGV  459 (795)
T ss_dssp             GS-C-SCGGGEECSSSSTHHHHHHHHSCSSCCSEEEECCCTT-TTHHHHTSCTTCEEEEECCSTTCCCHHHHH-HHSSSE
T ss_pred             hh-h-cChhheeecCChhHHHHHHHHcCCCCeEEEEECCCcH-HHHHHHHHhcCCCEEEEeccccccCccccc-ccCCCC
Confidence            44 3 899989988764   44555564  899999999986 689999999999999999976532221111 123667


Q ss_pred             EEEEeecc------CHHHHHHHHHHHHhCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCCc
Q 027668          156 IVGGSLIG------GLKETQEMIDFAAKHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       156 ~i~~~~~~------~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      ++.+....      ..+.++++++++++|.+++.+ ++|+++++++||+.+.+++..||+|+++...
T Consensus       460 ~~~~~~l~~~~~~~~~~~l~~~~~l~~~g~l~p~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~~~~  526 (795)
T 3slk_A          460 SYQAFDTVEAGPQRIGEMLHELVELFEGRVLEPLPVTAWDVRQAPEALRHLSQARHVGKLVLTMPPV  526 (795)
T ss_dssp             EEEECCGGGGHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEGGGHHHHHHHHHHTCCCBEEEEECCCC
T ss_pred             EEEEeeccccCHHHHHHHHHHHHHHHHcCCcCCCcceeEcHHHHHHHHHHHhcCCccceEEEecCcc
Confidence            77665442      135588899999999999876 9999999999999999999999999998654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.97  E-value=2e-29  Score=200.74  Aligned_cols=208  Identities=17%  Similarity=0.254  Sum_probs=171.4

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS   80 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~   80 (220)
                      ++|++.++++|++ + .++|+++..+.|||+++.+...+++|++|||+|+ |++|++++|+++..|++|+++++++++++
T Consensus       125 ~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~  202 (362)
T 2c0c_A          125 VVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSA  202 (362)
T ss_dssp             EEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHH
T ss_pred             EEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence            5788999999996 3 4667888999999999988777899999999995 99999999999999999999999988776


Q ss_pred             HHHHHcCCcEEecCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCc---c---c---C-
Q 027668           81 EAVERLGADSFLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPL---E---L---P-  146 (220)
Q Consensus        81 ~~~~~~g~~~v~~~~~~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~---~---~---~-  146 (220)
                      .+ +++|++.++++.+.   +.+++..+ ++|++|||+|.. .++.++++++++|+++.+|......   .   +   + 
T Consensus       203 ~~-~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~-~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~  280 (362)
T 2c0c_A          203 FL-KSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGGA-MFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTL  280 (362)
T ss_dssp             HH-HHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCTH-HHHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTH
T ss_pred             HH-HHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCHH-HHHHHHHHHhcCCEEEEEeCCCCcCccccccccccccc
Confidence            66 68999999887653   33444444 899999999985 6889999999999999999754211   0   0   1 


Q ss_pred             ccccccCCcEEEEeeccC-----HHHHHHHHHHHHhCCcceeE---------EEEecccHHHHHHHHHcCCcceEEEEEe
Q 027668          147 AFPLLTGEKIVGGSLIGG-----LKETQEMIDFAAKHNIRADI---------EVIPADYVNTAMERLAKADVRYRFVIDV  212 (220)
Q Consensus       147 ~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~i---------~~~~~~~i~~a~~~~~~~~~~~k~v~~~  212 (220)
                      ...++.+++++.|+....     .++++++++++++|.+++.+         +.++++++++||+.+.+++..+|+|+.+
T Consensus       281 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  360 (362)
T 2c0c_A          281 PAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVEL  360 (362)
T ss_dssp             HHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEEC
T ss_pred             HHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCCCCceEEEEc
Confidence            134577899999987542     46789999999999998764         3579999999999999888789999987


Q ss_pred             C
Q 027668          213 A  213 (220)
Q Consensus       213 ~  213 (220)
                      .
T Consensus       361 ~  361 (362)
T 2c0c_A          361 P  361 (362)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.96  E-value=2.1e-30  Score=207.55  Aligned_cols=210  Identities=13%  Similarity=0.099  Sum_probs=167.3

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEE--cCchHHHHHHHHHHHCCCeEEEEeCCcccH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV--GLGGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~--G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~   79 (220)
                      ++|++.++++|+++++++||++++.+.|||++++...  ++|++|||+  |+|++|++++|+++.+|++|++++++++++
T Consensus       132 ~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~--~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~  209 (379)
T 3iup_A          132 CIPADQCLVLPEGATPADGASSFVNPLTALGMVETMR--LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQA  209 (379)
T ss_dssp             EEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHHHHHH--HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHH
T ss_pred             EeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhc--cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            5788999999999999999999999999998887665  899999999  459999999999999999999999998887


Q ss_pred             HHHHHHcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccc-----cC-----------CEEEEecC
Q 027668           80 SEAVERLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLK-----SQ-----------GKLVLLGA  138 (220)
Q Consensus        80 ~~~~~~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~-----~~-----------g~iv~~g~  138 (220)
                      +.+ +++|++.++++.+.+   .+++.++  ++|++|||+|.......++++++     ++           |+++.+|.
T Consensus       210 ~~~-~~lGa~~~~~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~  288 (379)
T 3iup_A          210 DLL-KAQGAVHVCNAASPTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGG  288 (379)
T ss_dssp             HHH-HHTTCSCEEETTSTTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCC
T ss_pred             HHH-HhCCCcEEEeCCChHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecC
Confidence            666 789999999887653   4445543  89999999998766778888875     55           45555544


Q ss_pred             CCCCcccCccccccCCcEEEEeeccC------HHH----HHHHHHHHHhCCcceeE-EEEecccH--HHHHHHHHcCCcc
Q 027668          139 PEKPLELPAFPLLTGEKIVGGSLIGG------LKE----TQEMIDFAAKHNIRADI-EVIPADYV--NTAMERLAKADVR  205 (220)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~----~~~~~~~~~~~~~~~~i-~~~~~~~i--~~a~~~~~~~~~~  205 (220)
                      .. ..+++...++.+++++.|+....      .+.    ++.+++++.+ .+.+.+ ++|+++++  ++||+.+.+++..
T Consensus       289 ~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~l~~~~~~~A~~~l~~~~~~  366 (379)
T 3iup_A          289 LD-TSPTEFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKT-TFASHYSKEISLAEVLDLDMIAVYNKRATG  366 (379)
T ss_dssp             SE-EEEEEECCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT-TTCCCCSEEEEHHHHTCHHHHHHHTTCCTT
T ss_pred             CC-CCccccccccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhc-cCCCcceEEecHHHhhhHHHHHHHhcCCCC
Confidence            32 12233445677899999986532      223    3555566666 577777 99999999  9999999999888


Q ss_pred             eEEEEEeCCcc
Q 027668          206 YRFVIDVANTM  216 (220)
Q Consensus       206 ~k~v~~~~~~~  216 (220)
                      +|+|++++...
T Consensus       367 gKvVv~~~~g~  377 (379)
T 3iup_A          367 EKYLINPNKGL  377 (379)
T ss_dssp             CCEEEETTTTC
T ss_pred             ceEEEeCCCCC
Confidence            99999987653

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.94  E-value=1.8e-26  Score=217.43  Aligned_cols=214  Identities=20%  Similarity=0.259  Sum_probs=174.5

Q ss_pred             CcccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccH
Q 027668            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK   79 (220)
Q Consensus         1 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~   79 (220)
                      +++|++.++++|+++++++||++++.+.|||+++.....+++|++|||+|+ |++|++++|+|+..|++|++++.+++++
T Consensus      1626 v~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga~Viat~~s~~k~ 1705 (2512)
T 2vz8_A         1626 VLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKR 1705 (2512)
T ss_dssp             EECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             EEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCCEEEEEeCChhhh
Confidence            367889999999999999999999999999999988788999999999986 9999999999999999999999998888


Q ss_pred             HHHHHH---cCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCcccc
Q 027668           80 SEAVER---LGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPL  150 (220)
Q Consensus        80 ~~~~~~---~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~  150 (220)
                      +.+.+.   +|+++++++.+.+   .+.+.++  |+|+||||++.. .+..++++++++|+++.+|..... .......+
T Consensus      1706 ~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~g~~-~l~~~l~~L~~~Gr~V~iG~~~~~~~~~~~~~~ 1784 (2512)
T 2vz8_A         1706 AYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEE-KLQASVRCLAQHGRFLEIGKFDLSNNHALGMAV 1784 (2512)
T ss_dssp             HHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCEEEEEECCCHH-HHHHHHTTEEEEEEEEECCCHHHHTTCEEEGGG
T ss_pred             HHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCceEEEECCCch-HHHHHHHhcCCCcEEEEeecccccccCcccccc
Confidence            777553   6788888887754   3444454  799999999854 689999999999999999864311 11122345


Q ss_pred             ccCCcEEEEeeccC-----HHHHHHHHHHHH----hCCcceeE-EEEecccHHHHHHHHHcCCcceEEEEEeCCc
Q 027668          151 LTGEKIVGGSLIGG-----LKETQEMIDFAA----KHNIRADI-EVIPADYVNTAMERLAKADVRYRFVIDVANT  215 (220)
Q Consensus       151 ~~~~~~i~~~~~~~-----~~~~~~~~~~~~----~~~~~~~i-~~~~~~~i~~a~~~~~~~~~~~k~v~~~~~~  215 (220)
                      +.+++++.++....     ...++.+++++.    +|.+.+.+ ++|+++++++|++.+.+++..+|+|+.++++
T Consensus      1785 ~~~~~~~~g~~l~~~~~~~~~~~~~~l~~l~~~~~~g~l~p~i~~~f~l~ei~eA~~~l~~g~~~GKvVi~~~~~ 1859 (2512)
T 2vz8_A         1785 FLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQVREE 1859 (2512)
T ss_dssp             GGGCCEEEECCGGGTTSSCCHHHHHHHHHHHHHHTTTCSCCCCEEEEESSTHHHHHHHHHTTCCSSEEEEECSCC
T ss_pred             cccCCcEEEeeHHHHhhhCHHHHHHHHHHHHHHHHcCCcCCCcceEecHHHHHHHHHhhhccCccceEEEECCCc
Confidence            67899999875532     345566666554    57787766 8999999999999999998889999998654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.92  E-value=2.6e-25  Score=162.81  Aligned_cols=176  Identities=22%  Similarity=0.278  Sum_probs=130.4

Q ss_pred             cceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH
Q 027668            6 HFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE   84 (220)
Q Consensus         6 ~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~   84 (220)
                      +.++++|+++++++||++++.+.|||+++.....+++|++|+|+|+ |++|++++++++..|++|+++++++++.+.+ +
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML-S   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-H
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-H
Confidence            5789999999999999999999999999977767899999999995 9999999999999999999999988776665 6


Q ss_pred             HcCCcEEecCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccccccCCcEE
Q 027668           85 RLGADSFLVSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGEKIV  157 (220)
Q Consensus        85 ~~g~~~v~~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~~~~~~~~i  157 (220)
                      ++|++.+++..+.+   .+.+..+  ++|++||++|.. .+..++++++++|+++.+|....  ..+++. ..+.+++++
T Consensus        81 ~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~  158 (198)
T 1pqw_A           81 RLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGE-AIQRGVQILAPGGRFIELGKKDVYADASLGL-AALAKSASF  158 (198)
T ss_dssp             TTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCTH-HHHHHHHTEEEEEEEEECSCGGGTTTCEEEG-GGGTTTCEE
T ss_pred             HcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCchH-HHHHHHHHhccCCEEEEEcCCCCcCcCcCCh-hHhcCCcEE
Confidence            78988888776543   3334332  799999999865 68899999999999999998542  222332 234688888


Q ss_pred             EEeec------cC---HHHHHHHHHHHHhCCcceeE
Q 027668          158 GGSLI------GG---LKETQEMIDFAAKHNIRADI  184 (220)
Q Consensus       158 ~~~~~------~~---~~~~~~~~~~~~~~~~~~~i  184 (220)
                      .+...      ..   .+.++++++++++|.+++.+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~  194 (198)
T 1pqw_A          159 SVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLP  194 (198)
T ss_dssp             EECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             EEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCCC
Confidence            86432      11   35688899999999998764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.36  E-value=7.5e-12  Score=99.28  Aligned_cols=136  Identities=17%  Similarity=0.153  Sum_probs=97.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g~~~~--  119 (220)
                      +++|+|+|+|++|+++++.++.+|++|+++++++++.+.+.+.++.. .+++.. .+.+.+...++|+||+|++.+..  
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DvVI~~~~~~~~~~  245 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSN-SAEIETAVAEADLLIGAVLVPGRRA  245 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECC-HHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCC-HHHHHHHHcCCCEEEECCCcCCCCC
Confidence            48999999999999999999999999999999998887774333322 233332 23333333489999999987542  


Q ss_pred             ----HHHHHhccccCCEEEEecCCCC-------CcccCccccccCCcEEEEeec------------cCHHHHHHHHHHHH
Q 027668          120 ----LMPLIGLLKSQGKLVLLGAPEK-------PLELPAFPLLTGEKIVGGSLI------------GGLKETQEMIDFAA  176 (220)
Q Consensus       120 ----~~~~~~~l~~~g~iv~~g~~~~-------~~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~  176 (220)
                          .+..++.++++|.++.++...+       ..+++...+..+++++.+...            .+...++.+++++.
T Consensus       246 ~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~~~~l~~l~~  325 (361)
T 1pjc_A          246 PILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNSTLPYVVKLAN  325 (361)
T ss_dssp             CCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence                5667889999999999987643       234555566678888877432            11233567778887


Q ss_pred             hCC
Q 027668          177 KHN  179 (220)
Q Consensus       177 ~~~  179 (220)
                      +|.
T Consensus       326 ~G~  328 (361)
T 1pjc_A          326 QGL  328 (361)
T ss_dssp             HGG
T ss_pred             CCc
Confidence            773

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.35  E-value=5e-12  Score=100.77  Aligned_cols=137  Identities=18%  Similarity=0.148  Sum_probs=97.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~--  119 (220)
                      ++++|+|+|+|.+|+.+++.++.+|++|+++++++++.+.+.+.+|.....+....+.+.+...++|+||+|++.+..  
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t  246 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKA  246 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCC
Confidence            679999999999999999999999999999999998877775557865322233333444444589999999987643  


Q ss_pred             ----HHHHHhccccCCEEEEecCCCC-------CcccCccccccCCcEEEEeecc------------CHHHHHHHHHHHH
Q 027668          120 ----LMPLIGLLKSQGKLVLLGAPEK-------PLELPAFPLLTGEKIVGGSLIG------------GLKETQEMIDFAA  176 (220)
Q Consensus       120 ----~~~~~~~l~~~g~iv~~g~~~~-------~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~~~~~~~~  176 (220)
                          ....++.++++|.++.++...+       +.+++...+..+++++.+....            +...++.+++++.
T Consensus       247 ~~li~~~~l~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~~as~~~~~~~~~~~~~l~~  326 (377)
T 2vhw_A          247 PKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTNATMPYVLELAD  326 (377)
T ss_dssp             CCCBCHHHHTTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceecHHHHhcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence                5678899999999999986432       2334444556677776654321            1122466667776


Q ss_pred             hC
Q 027668          177 KH  178 (220)
Q Consensus       177 ~~  178 (220)
                      +|
T Consensus       327 ~g  328 (377)
T 2vhw_A          327 HG  328 (377)
T ss_dssp             HH
T ss_pred             CC
Confidence            66

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.35  E-value=8e-12  Score=99.43  Aligned_cols=138  Identities=15%  Similarity=0.161  Sum_probs=94.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      ++++|+|+|+|.+|+.+++.++.+|++|+++++++++.+.+.+.+|.....+..+.+.+.+...++|++|+|++...   
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~  244 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKA  244 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC------
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCcccc
Confidence            46899999999999999999999999999999998887777555787643444445555555568999999998653   


Q ss_pred             ---cHHHHHhccccCCEEEEecCCCCC-------cccCccccccCCcEEEEeec------------cCHHHHHHHHHHHH
Q 027668          119 ---PLMPLIGLLKSQGKLVLLGAPEKP-------LELPAFPLLTGEKIVGGSLI------------GGLKETQEMIDFAA  176 (220)
Q Consensus       119 ---~~~~~~~~l~~~g~iv~~g~~~~~-------~~~~~~~~~~~~~~i~~~~~------------~~~~~~~~~~~~~~  176 (220)
                         ..+..++.++++|.++.++...+.       .+++...+..+++++.+...            .+...++.+++++.
T Consensus       245 ~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~  324 (369)
T 2eez_A          245 PKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAE  324 (369)
T ss_dssp             -CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHh
Confidence               156788999999999999876532       23333445567788776432            12344677777777


Q ss_pred             hCC
Q 027668          177 KHN  179 (220)
Q Consensus       177 ~~~  179 (220)
                      +|.
T Consensus       325 ~g~  327 (369)
T 2eez_A          325 KGL  327 (369)
T ss_dssp             HTT
T ss_pred             cCh
Confidence            774

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.34  E-value=1.1e-11  Score=99.02  Aligned_cols=157  Identities=15%  Similarity=0.149  Sum_probs=110.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCC----------------------HH
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRD----------------------QD   98 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~----------------------~~   98 (220)
                      ++++|+|+|+|.+|+.+++.++.+|++|+++++++++.+.+ +++|++.+ ++..+                      .+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~-~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV-ESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH-HHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68999999999999999999999999999999998887777 56998654 22211                      12


Q ss_pred             HHHHhcCCccEEEEcC---CCc--ccH-HHHHhccccCCEEEEecCCC-CCc--ccCccccccCCcEEEEeeccCHHHHH
Q 027668           99 EMQAAMGTMDGIIDTV---SAV--HPL-MPLIGLLKSQGKLVLLGAPE-KPL--ELPAFPLLTGEKIVGGSLIGGLKETQ  169 (220)
Q Consensus        99 ~~~~~~~~~d~vid~~---g~~--~~~-~~~~~~l~~~g~iv~~g~~~-~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~  169 (220)
                      .+.+...++|+||+|+   |.+  ..+ ...++.+++++.++.++... +..  +.+...+..+++++.++........+
T Consensus       250 ~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~p~~~~~  329 (384)
T 1l7d_A          250 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAA  329 (384)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSGGGGGHH
T ss_pred             HHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCCcchhHH
Confidence            2445556899999999   532  222 67889999999999998643 222  22444556788999987654434456


Q ss_pred             HHHHHHHhCCccee---E-E---EEecccHHHHHHHH
Q 027668          170 EMIDFAAKHNIRAD---I-E---VIPADYVNTAMERL  199 (220)
Q Consensus       170 ~~~~~~~~~~~~~~---i-~---~~~~~~i~~a~~~~  199 (220)
                      ...+++.++.+...   . +   .+.++.-++.++..
T Consensus       330 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  366 (384)
T 1l7d_A          330 DASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGT  366 (384)
T ss_dssp             HHHHHHHHHHHHHHGGGEETTTTEECCCTTCHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHhCCcchhhccccCHHHhcC
Confidence            68888888865532   1 1   45555555565544

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.21  E-value=1.3e-10  Score=93.15  Aligned_cols=137  Identities=19%  Similarity=0.167  Sum_probs=95.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCC-------------CHH-------HH
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSR-------------DQD-------EM  100 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~-------------~~~-------~~  100 (220)
                      ++++|+|+|+|.+|+.++++++.+|++|++++++.++++.+ +++|+..+. +..             ..+       .+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~-~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV-QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH-HHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            57899999999999999999999999999999998887776 678887542 111             111       23


Q ss_pred             HHhcCCccEEEEcCCCc-----ccH-HHHHhccccCCEEEEecCCC-CCcccCc--c-ccccCCcEEEEeeccCHHHH-H
Q 027668          101 QAAMGTMDGIIDTVSAV-----HPL-MPLIGLLKSQGKLVLLGAPE-KPLELPA--F-PLLTGEKIVGGSLIGGLKET-Q  169 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~-----~~~-~~~~~~l~~~g~iv~~g~~~-~~~~~~~--~-~~~~~~~~i~~~~~~~~~~~-~  169 (220)
                      .+...++|+||+|++.+     ..+ ...++.|++++.++.++... +..+...  . .+..+++++.+..... ..+ +
T Consensus       250 ~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~~~p-~~~~~  328 (401)
T 1x13_A          250 AAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLP-GRLPT  328 (401)
T ss_dssp             HHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCSCTG-GGSHH
T ss_pred             HHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeCCCc-ccCHH
Confidence            44445899999996332     223 57889999999999999753 3343322  2 2567889999875532 334 3


Q ss_pred             HHHHHHHhCCc
Q 027668          170 EMIDFAAKHNI  180 (220)
Q Consensus       170 ~~~~~~~~~~~  180 (220)
                      ...+++.++.+
T Consensus       329 ~a~~ll~~~~~  339 (401)
T 1x13_A          329 QSSQLYGTNLV  339 (401)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhHH
Confidence            46666666644

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.08  E-value=7.4e-10  Score=90.54  Aligned_cols=107  Identities=20%  Similarity=0.245  Sum_probs=85.2

Q ss_pred             hhhhhhhhhHhcc-CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc
Q 027668           26 AGITVYSPLRFYG-LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM  104 (220)
Q Consensus        26 ~~~ta~~~l~~~~-~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~  104 (220)
                      ...++++++.+.. ...+|++|+|+|.|.+|+.+++.++.+|++|+++++++.+.+.+ +++|++ +.   +   +.+..
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A-~~~Ga~-~~---~---l~e~l  327 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQA-MMEGFD-VV---T---VEEAI  327 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCE-EC---C---HHHHG
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCE-Ee---c---HHHHH
Confidence            3455666665543 25789999999999999999999999999999999998876666 578886 32   2   22334


Q ss_pred             CCccEEEEcCCCcccHH-HHHhccccCCEEEEecCCC
Q 027668          105 GTMDGIIDTVSAVHPLM-PLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       105 ~~~d~vid~~g~~~~~~-~~~~~l~~~g~iv~~g~~~  140 (220)
                      .++|+||+|+|....+. ..++.++++|.++.+|...
T Consensus       328 ~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          328 GDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             GGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             hCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCC
Confidence            58999999999887666 7889999999999998754

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.08  E-value=1e-10  Score=94.08  Aligned_cols=129  Identities=16%  Similarity=0.184  Sum_probs=90.0

Q ss_pred             ceeeCCCCCCcccccccchhhhhhhhhhHhcc---CCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHH
Q 027668            7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYG---LDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA   82 (220)
Q Consensus         7 ~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~   82 (220)
                      .++++|++++.+.++. .....++|.++....   .-.+|++|+|+|+|.+|.++++.++..|+ +|++++++.++.+.+
T Consensus       129 ~a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~l  207 (404)
T 1gpj_A          129 RAINLGKRAREETRIS-EGAVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVEL  207 (404)
T ss_dssp             HHHHHHHHHHHHSSTT-CSCCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHH
T ss_pred             HHhhhhccCcchhhhc-CCCccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence            3455666666666543 334456666664322   12589999999999999999999999999 999999998877667


Q ss_pred             HHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH--HHHhc--c--ccCCEEEEecCCC
Q 027668           83 VERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM--PLIGL--L--KSQGKLVLLGAPE  140 (220)
Q Consensus        83 ~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~--~~~~~--l--~~~g~iv~~g~~~  140 (220)
                      .+++|++ +++..   .+.+...++|+||+|++....+.  ..+..  +  +++|.++.++...
T Consensus       208 a~~~g~~-~~~~~---~l~~~l~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~  267 (404)
T 1gpj_A          208 ARDLGGE-AVRFD---ELVDHLARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIAN  267 (404)
T ss_dssp             HHHHTCE-ECCGG---GHHHHHHTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             HHHcCCc-eecHH---hHHHHhcCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccC
Confidence            6888876 33332   23333458999999998765432  44554  3  5678888877644

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.05  E-value=4.8e-10  Score=77.28  Aligned_cols=105  Identities=19%  Similarity=0.163  Sum_probs=77.9

Q ss_pred             hhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 027668           30 VYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        30 a~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~  109 (220)
                      ++++++.... ..+++|+|+|+|.+|...++.++..|++|++++++.++.+.+.+++|.... ...+.   .+...++|+
T Consensus         9 ~~~a~~~~~~-~~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~-~~~~~---~~~~~~~Di   83 (144)
T 3oj0_A            9 PSIVYDIVRK-NGGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYV-LINDI---DSLIKNNDV   83 (144)
T ss_dssp             HHHHHHHHHH-HCCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEE-ECSCH---HHHHHTCSE
T ss_pred             HHHHHHHHHh-ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceE-eecCH---HHHhcCCCE
Confidence            3555554442 458999999999999999999998999999999999888887788886533 23332   222347999


Q ss_pred             EEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          110 IIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ||+|++....+.. ...+++++.++.++.+.
T Consensus        84 vi~at~~~~~~~~-~~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           84 IITATSSKTPIVE-ERSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             EEECSCCSSCSBC-GGGCCTTCEEEECCSSC
T ss_pred             EEEeCCCCCcEee-HHHcCCCCEEEEccCCc
Confidence            9999998743322 26788899998887754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.03  E-value=3.3e-09  Score=84.37  Aligned_cols=138  Identities=20%  Similarity=0.177  Sum_probs=95.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEec-------------CCC----------HH
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV-------------SRD----------QD   98 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~-------------~~~----------~~   98 (220)
                      ++.+|+|+|+|.+|+.++++++.+|++|++.++++++++.+ +++|+..+..             +..          .+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~-~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQV-ASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHH-HHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            67899999999999999999999999999999999887777 5688753321             100          12


Q ss_pred             HHHHhcCCccEEEEcCCCcc------cHHHHHhccccCCEEEEecCCC-CCccc--CccccccCCcEEEEeeccCHHHHH
Q 027668           99 EMQAAMGTMDGIIDTVSAVH------PLMPLIGLLKSQGKLVLLGAPE-KPLEL--PAFPLLTGEKIVGGSLIGGLKETQ  169 (220)
Q Consensus        99 ~~~~~~~~~d~vid~~g~~~------~~~~~~~~l~~~g~iv~~g~~~-~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~  169 (220)
                      .+.+...+.|+||.|+..+.      .-+..++.+++++.++.++... +.+..  +...+..+++++.+.........+
T Consensus       268 ~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~nlP~~vp~  347 (405)
T 4dio_A          268 LVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHLNVAGRIAA  347 (405)
T ss_dssp             HHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEETTEEEEECSSGGGGGHH
T ss_pred             HHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEECCEEEEEeCCCCccCHH
Confidence            33344458999999974332      2367889999999999998643 33322  222344578888887654433455


Q ss_pred             HHHHHHHhCCc
Q 027668          170 EMIDFAAKHNI  180 (220)
Q Consensus       170 ~~~~~~~~~~~  180 (220)
                      ...+++.++.+
T Consensus       348 tAS~~ls~~~~  358 (405)
T 4dio_A          348 SASLLYAKNLV  358 (405)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555533

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.97  E-value=5.6e-09  Score=82.39  Aligned_cols=136  Identities=18%  Similarity=0.172  Sum_probs=91.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecC---------C----------CHHHHHH
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS---------R----------DQDEMQA  102 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~---------~----------~~~~~~~  102 (220)
                      ++.+|+|+|+|.+|+.+++.++.+|++|++++++.++++.+ +++|++.+...         .          ..+.+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~-~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQV-RSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHH-HHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            67899999999999999999999999999999999988887 56887643100         0          1123444


Q ss_pred             hcCCccEEEEcCCCc-----c-cHHHHHhccccCCEEEEecCCCC-Ccc--cCccccccCCcEEEEeeccCHHHHHHHHH
Q 027668          103 AMGTMDGIIDTVSAV-----H-PLMPLIGLLKSQGKLVLLGAPEK-PLE--LPAFPLLTGEKIVGGSLIGGLKETQEMID  173 (220)
Q Consensus       103 ~~~~~d~vid~~g~~-----~-~~~~~~~~l~~~g~iv~~g~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  173 (220)
                      ...++|+||.|+..+     . ..+..++.+++++.++.++...+ .+.  -+...+..+++++.+.........+..-.
T Consensus       262 ~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~~~~~~~gV~~~~v~nlP~~vp~tAS~  341 (381)
T 3p2y_A          262 AITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPGRTIVHHGVTITSPLNLPATMPEHASE  341 (381)
T ss_dssp             HHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTCEEEETTEEEECCSCTGGGSHHHHHH
T ss_pred             HHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCCCeEEECCEEEEeeCCCchhhHHHHHH
Confidence            556999999997332     1 23678899999999999987543 222  12222344677777664433222333444


Q ss_pred             HHHhC
Q 027668          174 FAAKH  178 (220)
Q Consensus       174 ~~~~~  178 (220)
                      ++.+.
T Consensus       342 ~~s~~  346 (381)
T 3p2y_A          342 LYAKN  346 (381)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.76  E-value=1.2e-07  Score=62.51  Aligned_cols=93  Identities=17%  Similarity=0.243  Sum_probs=67.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      ++.+|+|+|+|.+|..+++.+...| .+|+++++++++.+.+ ...+... ..+..+.+.+.+...++|+||+|++....
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVL-NRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLT   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHH-HTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGH
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHH-HhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhh
Confidence            4568999999999999999999999 6999999998877666 3556543 34555666777777799999999986632


Q ss_pred             HHHHHhccccCCEEEE
Q 027668          120 LMPLIGLLKSQGKLVL  135 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~  135 (220)
                      ......+.+.+..++.
T Consensus        83 ~~~~~~~~~~g~~~~~   98 (118)
T 3ic5_A           83 PIIAKAAKAAGAHYFD   98 (118)
T ss_dssp             HHHHHHHHHTTCEEEC
T ss_pred             HHHHHHHHHhCCCEEE
Confidence            2233333444544443

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.74  E-value=3.4e-08  Score=68.79  Aligned_cols=90  Identities=11%  Similarity=0.131  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHh-cCCccEEEEcCCCc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAV  117 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~  117 (220)
                      ..++++|+|+|+|.+|+.+++.++..|.+|+++++++++.+.+.+..|...+. +..+.+.+.+. ..++|+||.|++..
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~   95 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDD   95 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCH
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCc
Confidence            36788999999999999999999999999999999988776652256665443 33344444443 34899999999987


Q ss_pred             ccHHHHHhcccc
Q 027668          118 HPLMPLIGLLKS  129 (220)
Q Consensus       118 ~~~~~~~~~l~~  129 (220)
                      .....+...++.
T Consensus        96 ~~~~~~~~~~~~  107 (155)
T 2g1u_A           96 STNFFISMNARY  107 (155)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            544455555554

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.74  E-value=1.3e-07  Score=75.44  Aligned_cols=104  Identities=19%  Similarity=0.199  Sum_probs=80.4

Q ss_pred             hhhhhHhcc-CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCcc
Q 027668           30 VYSPLRFYG-LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        30 a~~~l~~~~-~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  108 (220)
                      .+.++.+.. ..-.|++|+|+|.|.+|..+++.++.+|++|+++++++.+..++ ...|...+       .+.+...+.|
T Consensus       206 ~~~gi~rat~~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A-~~~G~~v~-------~Leeal~~AD  277 (435)
T 3gvp_A          206 ILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQA-CMDGFRLV-------KLNEVIRQVD  277 (435)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEEC-------CHHHHTTTCS
T ss_pred             HHHHHHHhhCceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHH-HHcCCEec-------cHHHHHhcCC
Confidence            344554443 34589999999999999999999999999999999887655444 35565321       1445566899


Q ss_pred             EEEEcCCCcccHH-HHHhccccCCEEEEecCCCC
Q 027668          109 GIIDTVSAVHPLM-PLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       109 ~vid~~g~~~~~~-~~~~~l~~~g~iv~~g~~~~  141 (220)
                      +++.|.|..+.+. ..+..+++++.++.+|....
T Consensus       278 IVi~atgt~~lI~~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          278 IVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             EEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred             EEEECCCCcccCCHHHHHhcCCCcEEEEecCCCc
Confidence            9999998877666 78899999999999987654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.74  E-value=5.5e-07  Score=69.29  Aligned_cols=96  Identities=21%  Similarity=0.298  Sum_probs=74.8

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -+|++|+|+|.|.+|+.+++.++..|++|++.+++.++.+.+ +++|+..+ +.   +.+.+...+.|+|+.+++....-
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~-~~---~~l~~~l~~aDvVi~~~p~~~i~  227 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARI-AEMGMEPF-HI---SKAAQELRDVDVCINTIPALVVT  227 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTSEEE-EG---GGHHHHTTTCSEEEECCSSCCBC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-HHCCCeec-Ch---hhHHHHhcCCCEEEECCChHHhC
Confidence            478999999999999999999999999999999988765555 46786533 22   23445556899999999765333


Q ss_pred             HHHHhccccCCEEEEecCCCC
Q 027668          121 MPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      ...+..+++++.++.++....
T Consensus       228 ~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          228 ANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             HHHHHHSCTTCEEEECSSTTC
T ss_pred             HHHHHhcCCCCEEEEecCCCC
Confidence            457788999999999986443

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=98.69  E-value=1.2e-07  Score=72.01  Aligned_cols=99  Identities=19%  Similarity=0.250  Sum_probs=77.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .|+.+||.|+ +++|.++++.+...|++|+++++++++.+++.+++|...   ..|-.+.+.++++       .+++|++
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiL  107 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDVL  107 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            6889999997 899999999999999999999999999988888888532   2344555444322       3589999


Q ss_pred             EEcCCCcc-------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          111 IDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 id~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++++|...                         ..+.++..|+++|+++.+++..
T Consensus       108 VNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~  162 (273)
T 4fgs_A          108 FVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTA  162 (273)
T ss_dssp             EECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred             EECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehh
Confidence            99998742                         2355677888899999997654

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.66  E-value=1.9e-07  Score=66.79  Aligned_cols=93  Identities=15%  Similarity=0.175  Sum_probs=68.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHh--cCCccEEEEcCCCcc
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA--MGTMDGIIDTVSAVH  118 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~--~~~~d~vid~~g~~~  118 (220)
                      +++|+|+|+|.+|+.+++.++.. |.+|+++++++++.+.+ ++.|...+. +..+.+.+.+.  ..++|+||.|++...
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~-~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~  117 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQH-RSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQ  117 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHH-HHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHH
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHH-HHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChH
Confidence            56899999999999999999998 99999999999887776 567876554 44555666665  358999999998765


Q ss_pred             cHHHHHhccc---cCCEEEEe
Q 027668          119 PLMPLIGLLK---SQGKLVLL  136 (220)
Q Consensus       119 ~~~~~~~~l~---~~g~iv~~  136 (220)
                      ........++   +..+++..
T Consensus       118 ~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          118 GNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             HHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEE
Confidence            4334444444   34455543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.59  E-value=7.6e-07  Score=68.72  Aligned_cols=98  Identities=19%  Similarity=0.279  Sum_probs=75.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -+|++|+|+|+|.+|+.+++.++..|++|++.+++.++.+.+ .++|... ++.   +.+.+...+.|+|+.+++....-
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~-~~~---~~l~~~l~~aDvVi~~~p~~~i~  229 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARI-TEMGLVP-FHT---DELKEHVKDIDICINTIPSMILN  229 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCEE-EEG---GGHHHHSTTCSEEEECCSSCCBC
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHCCCeE-Ech---hhHHHHhhCCCEEEECCChhhhC
Confidence            478999999999999999999999999999999988765555 4567652 222   23455567899999999875333


Q ss_pred             HHHHhccccCCEEEEecCCCCCc
Q 027668          121 MPLIGLLKSQGKLVLLGAPEKPL  143 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~~~~~~  143 (220)
                      ...+..+++++.++.++......
T Consensus       230 ~~~~~~mk~g~~lin~a~g~~~~  252 (300)
T 2rir_A          230 QTVLSSMTPKTLILDLASRPGGT  252 (300)
T ss_dssp             HHHHTTSCTTCEEEECSSTTCSB
T ss_pred             HHHHHhCCCCCEEEEEeCCCCCc
Confidence            45778899999999998754333

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.57  E-value=7.9e-07  Score=71.24  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=78.1

Q ss_pred             hhhhHhc-cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 027668           31 YSPLRFY-GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        31 ~~~l~~~-~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~  109 (220)
                      +.++.+. +..-.|++++|+|.|.+|+.+++.++.+|++|+++++++.+..++ ...|...+    +   +.+.....|+
T Consensus       234 vdgI~Ratg~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A-~~~G~~vv----~---LeElL~~ADI  305 (464)
T 3n58_A          234 VDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQA-AMDGFEVV----T---LDDAASTADI  305 (464)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH-HHTTCEEC----C---HHHHGGGCSE
T ss_pred             HHHHHHhcCCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHH-HhcCceec----c---HHHHHhhCCE
Confidence            4444433 334689999999999999999999999999999998877654444 34565422    1   3344567999


Q ss_pred             EEEcCCCcccH-HHHHhccccCCEEEEecCCCC
Q 027668          110 IIDTVSAVHPL-MPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       110 vid~~g~~~~~-~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      ++.+.|..+.+ ...+..|++++.++.+|....
T Consensus       306 Vv~atgt~~lI~~e~l~~MK~GAILINvGRgdv  338 (464)
T 3n58_A          306 VVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDN  338 (464)
T ss_dssp             EEECCSSSSSBCHHHHHHSCTTEEEEECSSSTT
T ss_pred             EEECCCCccccCHHHHhcCCCCeEEEEcCCCCc
Confidence            99999887665 478889999999999987653

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=98.45  E-value=7.7e-07  Score=72.31  Aligned_cols=92  Identities=20%  Similarity=0.249  Sum_probs=72.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -.|++++|.|+|++|..+++.++..|++|+++++++.+..++. ..|.+ +.   +   ..+....+|+++++.|..+.+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa-~~g~d-v~---~---lee~~~~aDvVi~atG~~~vl  334 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQAT-MEGLQ-VL---T---LEDVVSEADIFVTTTGNKDII  334 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC---C---GGGTTTTCSEEEECSSCSCSB
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HhCCc-cC---C---HHHHHHhcCEEEeCCCChhhh
Confidence            5789999999999999999999999999999998887666653 45643 21   1   122334799999999987766


Q ss_pred             HH-HHhccccCCEEEEecCCC
Q 027668          121 MP-LIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       121 ~~-~~~~l~~~g~iv~~g~~~  140 (220)
                      .. .+..+++++.++.+|...
T Consensus       335 ~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          335 MLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             CHHHHTTSCTTEEEEESSSTT
T ss_pred             hHHHHHhcCCCeEEEEcCCCC
Confidence            54 888999999999988653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.44  E-value=2.3e-06  Score=68.60  Aligned_cols=91  Identities=14%  Similarity=0.204  Sum_probs=72.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -.|++|+|+|.|.+|..+++.++.+|++|+++++++.+..++ ...|...+       .+.+.....|+++.+.+....+
T Consensus       209 L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A-~~~G~~~~-------sL~eal~~ADVVilt~gt~~iI  280 (436)
T 3h9u_A          209 IAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQA-AMEGYQVL-------LVEDVVEEAHIFVTTTGNDDII  280 (436)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEEC-------CHHHHTTTCSEEEECSSCSCSB
T ss_pred             ccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHH-HHhCCeec-------CHHHHHhhCCEEEECCCCcCcc
Confidence            478999999999999999999999999999999887655444 45565422       2455667899999998876655


Q ss_pred             H-HHHhccccCCEEEEecCC
Q 027668          121 M-PLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       121 ~-~~~~~l~~~g~iv~~g~~  139 (220)
                      . ..+..|++++.++.++..
T Consensus       281 ~~e~l~~MK~gAIVINvgRg  300 (436)
T 3h9u_A          281 TSEHFPRMRDDAIVCNIGHF  300 (436)
T ss_dssp             CTTTGGGCCTTEEEEECSSS
T ss_pred             CHHHHhhcCCCcEEEEeCCC
Confidence            5 677889999999988754

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=98.44  E-value=1.9e-06  Score=64.93  Aligned_cols=100  Identities=19%  Similarity=0.249  Sum_probs=73.4

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccE
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~  109 (220)
                      -.|+++||.|+ |++|.++++.+...|++|+++++++++.+++.++++...   ..|-.+.+.++++       .+++|+
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDL   85 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            35789999997 999999999999999999999999888877777766432   2344454444322       248999


Q ss_pred             EEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          110 IIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +|+++|...                         ..+.++..++++|+++.+++..
T Consensus        86 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  141 (255)
T 4eso_A           86 LHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVA  141 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChh
Confidence            999988641                         1233455667789999987754

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.41  E-value=1.3e-06  Score=66.73  Aligned_cols=100  Identities=14%  Similarity=0.223  Sum_probs=72.0

Q ss_pred             ccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEE
Q 027668           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      ...++++++||.+|+|+.|..++.+++..|++|+.++.+++..+.+.+.   .|.+  .++..+..+ +.  .+.||+||
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~--d~~FDvV~  193 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-ID--GLEFDVLM  193 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GG--GCCCSEEE
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CC--CCCcCEEE
Confidence            3458999999999999877888888888899999999999877666433   3432  122222112 21  25899999


Q ss_pred             EcCCCc---ccHHHHHhccccCCEEEEecCC
Q 027668          112 DTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       112 d~~g~~---~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      .+...+   ..++.+.+.|++||+++.....
T Consensus       194 ~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          194 VAALAEPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             ECTTCSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             ECCCccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            766543   2467788999999999987643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.37  E-value=6e-06  Score=56.21  Aligned_cols=94  Identities=19%  Similarity=0.146  Sum_probs=68.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEEcCCCccc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVHP  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~  119 (220)
                      ..++|+|+|.|.+|..+++.++..|.+|+++++++++.+.+ ++.|...+. |..+.+.+++.. .++|.++-+++....
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~-~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~   84 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDEL-RERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE   84 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-HHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH
Confidence            35689999999999999999999999999999999988777 467876554 444555555442 389999999998642


Q ss_pred             HH---HHHhccccCCEEEEe
Q 027668          120 LM---PLIGLLKSQGKLVLL  136 (220)
Q Consensus       120 ~~---~~~~~l~~~g~iv~~  136 (220)
                      ..   ...+.+.+..+++..
T Consensus        85 n~~~~~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           85 AGEIVASARAKNPDIEIIAR  104 (140)
T ss_dssp             HHHHHHHHHHHCSSSEEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEEE
Confidence            22   233344456665543

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=98.32  E-value=1.2e-06  Score=65.15  Aligned_cols=98  Identities=15%  Similarity=0.171  Sum_probs=69.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-cEEecCCCHHHHHHhc---CCccEEEEcCCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAM---GTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~---~~~d~vid~~g~  116 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.+... .-.+ ....|-.+.+.+++..   +++|++++++|.
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPR-HPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCC-CTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhh-cCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            6899999997 89999999999999999999999887654321 1111 2233555665555443   589999999986


Q ss_pred             cc-----------------------cHHHHHhccc-cCCEEEEecCCC
Q 027668          117 VH-----------------------PLMPLIGLLK-SQGKLVLLGAPE  140 (220)
Q Consensus       117 ~~-----------------------~~~~~~~~l~-~~g~iv~~g~~~  140 (220)
                      ..                       ..+.++..|+ .+|+||.+++..
T Consensus        89 ~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~  136 (242)
T 4b79_A           89 SRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMY  136 (242)
T ss_dssp             CCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGG
T ss_pred             CCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence            42                       1233455554 579999998754

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=98.31  E-value=4.6e-06  Score=62.62  Aligned_cols=99  Identities=14%  Similarity=0.185  Sum_probs=70.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+++   |...   ..|-.+.+.++++       .+++
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~i   85 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSRI   85 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 89999999999999999999999988776665543   5432   2344555444332       2589


Q ss_pred             cEEEEcCCCcc--------------------------cHHHHHhccc--cCCEEEEecCCC
Q 027668          108 DGIIDTVSAVH--------------------------PLMPLIGLLK--SQGKLVLLGAPE  140 (220)
Q Consensus       108 d~vid~~g~~~--------------------------~~~~~~~~l~--~~g~iv~~g~~~  140 (220)
                      |++++++|...                          ..+.++..|+  .+|+||.+++..
T Consensus        86 DiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~  146 (254)
T 4fn4_A           86 DVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIA  146 (254)
T ss_dssp             CEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             CEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechh
Confidence            99999998421                          1234455553  479999998754

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=98.31  E-value=6.9e-06  Score=61.40  Aligned_cols=98  Identities=14%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE--EecCCCHHHHHHh-------cCCccEEEE
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS--FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      +++|||.|+ +++|.++++.+...|++|+++++++++.+++.++.+...  ..|-.+++.++++       .+++|++++
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            368999997 899999999999999999999999888877765544322  2344455444332       258999999


Q ss_pred             cCCCcc-------------------------cHHHHHhcc-ccCCEEEEecCCC
Q 027668          113 TVSAVH-------------------------PLMPLIGLL-KSQGKLVLLGAPE  140 (220)
Q Consensus       113 ~~g~~~-------------------------~~~~~~~~l-~~~g~iv~~g~~~  140 (220)
                      ++|...                         ..+.+...| +.+|+++.+++..
T Consensus        82 NAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~  135 (247)
T 3ged_A           82 NACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTR  135 (247)
T ss_dssp             CCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecc
Confidence            997642                         113334444 4579999987754

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=98.30  E-value=7.3e-06  Score=61.74  Aligned_cols=75  Identities=19%  Similarity=0.313  Sum_probs=58.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+++.++++...   ..|-.+.+.+.+.       .+++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   86 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDIL   86 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5689999997 999999999999999999999999888877777776432   2344555444332       2489999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        87 v~~Ag~   92 (259)
T 4e6p_A           87 VNNAAL   92 (259)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999986

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=98.29  E-value=7.7e-06  Score=61.59  Aligned_cols=99  Identities=13%  Similarity=0.224  Sum_probs=68.8

Q ss_pred             CCCEEEEEcC-c--hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCC---c-EEecCCCHHHHHH-------hc
Q 027668           42 PGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGA---D-SFLVSRDQDEMQA-------AM  104 (220)
Q Consensus        42 ~~~~vlI~G~-g--~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~---~-~v~~~~~~~~~~~-------~~  104 (220)
                      .|+++||.|+ |  ++|+++++.+...|++|++++++++..+++.+   +++.   . ...|-.+.+.+.+       ..
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDV   84 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5799999996 5  79999999999999999999999877665543   3342   1 1234455544332       23


Q ss_pred             CCccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          105 GTMDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       105 ~~~d~vid~~g~~~-----------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +++|++++++|...                             ..+.....++++|+||.+++..
T Consensus        85 G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~  149 (256)
T 4fs3_A           85 GNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLG  149 (256)
T ss_dssp             CCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGG
T ss_pred             CCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            58999999987521                             0122345567889999988754

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=98.28  E-value=1e-05  Score=61.60  Aligned_cols=76  Identities=14%  Similarity=0.257  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccE
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~  109 (220)
                      -.++++||.|+ |++|.++++.+...|++|+++++++++.+++.++++....   .|-.+.+.++++       .+++|+
T Consensus        25 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVDV  104 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35789999997 9999999999999999999999998887777777764322   344555444332       248999


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|+++|.
T Consensus       105 lv~nAg~  111 (277)
T 4dqx_A          105 LVNNAGF  111 (277)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999985

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=98.27  E-value=9e-06  Score=61.76  Aligned_cols=76  Identities=18%  Similarity=0.241  Sum_probs=57.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccE
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~  109 (220)
                      ..++++||.|+ |++|.++++.+...|++|++++++.++.+++.++++..   ...|-.+.+.++++       .+++|+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  105 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDV  105 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            35688999997 99999999999999999999999988887777777632   12345555444332       248999


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|+++|.
T Consensus       106 lVnnAg~  112 (272)
T 4dyv_A          106 LFNNAGT  112 (272)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999986

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=98.26  E-value=1e-05  Score=60.75  Aligned_cols=99  Identities=23%  Similarity=0.259  Sum_probs=70.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcEE---ecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADSF---LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v---~~~~~~~~~~~~-------~~~~  107 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.++..+++   |....   .|-.+++.++++       .+++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            5789999997 89999999999999999999999988766654433   43322   234444444322       2489


Q ss_pred             cEEEEcCCCcc-------------------------cHHHHHhcc---ccCCEEEEecCCC
Q 027668          108 DGIIDTVSAVH-------------------------PLMPLIGLL---KSQGKLVLLGAPE  140 (220)
Q Consensus       108 d~vid~~g~~~-------------------------~~~~~~~~l---~~~g~iv~~g~~~  140 (220)
                      |++++++|...                         ..+.+++.|   +.+|+|+.+++..
T Consensus        88 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~  148 (255)
T 4g81_D           88 DILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLT  148 (255)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehh
Confidence            99999998742                         123455555   2468999998754

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=98.26  E-value=1.6e-05  Score=59.42  Aligned_cols=75  Identities=21%  Similarity=0.270  Sum_probs=58.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe---cCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL---VSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~---~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .|+++||.|+ |++|.++++.+...|++|++++++.++.+++.++++.....   |-.+.+.++++       .+++|++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   84 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDIL   84 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            5789999997 99999999999999999999999998888777777754322   34444433332       2489999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        85 v~nAg~   90 (247)
T 3rwb_A           85 VNNASI   90 (247)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999985

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.26  E-value=6.2e-06  Score=56.12  Aligned_cols=75  Identities=21%  Similarity=0.147  Sum_probs=59.1

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEEcCCCcc
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVH  118 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~  118 (220)
                      ..+++|+|+|.+|..+++.+...|.+|+++++++++.+.+ ++.|...+. |..+++.+++.. .++|.+|.+++...
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~-~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~   82 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELL-EDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE   82 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-HHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-HHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH
Confidence            4679999999999999999999999999999998887777 455765443 455566665553 48999999999653

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.26  E-value=2.5e-06  Score=58.05  Aligned_cols=74  Identities=19%  Similarity=0.328  Sum_probs=55.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHh-cCCccEEEEcCCCc
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAV  117 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~  117 (220)
                      +++|+|+|+|.+|..+++.+...|.+|+++++++++.+.+ ++.+...+. +..+.+.+.+. .+++|++|.|++..
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-ASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTT-TTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            4679999999999999999999999999999987665544 344554332 33445555443 34899999999975

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=98.25  E-value=8e-06  Score=62.22  Aligned_cols=76  Identities=18%  Similarity=0.310  Sum_probs=58.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc--E-EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD--S-FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~--~-v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .|+++||.|+ |.+|.++++.+...|++|++++++.++.+.+.++++..  . ..|-.+.+.++++       .+++|++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  107 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDKL  107 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5788999997 89999999999999999999999988887777777642  1 2355555444332       2489999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      |+++|..
T Consensus       108 vnnAg~~  114 (277)
T 3gvc_A          108 VANAGVV  114 (277)
T ss_dssp             EECCCCC
T ss_pred             EECCCCC
Confidence            9999863

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=98.24  E-value=1.6e-05  Score=60.35  Aligned_cols=76  Identities=14%  Similarity=0.250  Sum_probs=59.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |++|.++++.+...|++|+++++++++.+++.++++..   ...|-.+.+.++++       .+++|++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   89 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDIV   89 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5789999997 99999999999999999999999998888877777642   22355555444333       2489999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      |+++|..
T Consensus        90 v~nAg~~   96 (271)
T 3tzq_B           90 DNNAAHS   96 (271)
T ss_dssp             EECCCCC
T ss_pred             EECCCCC
Confidence            9998854

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=98.23  E-value=7.9e-06  Score=63.21  Aligned_cols=86  Identities=15%  Similarity=0.279  Sum_probs=61.0

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC---cccHHHHHHHcC----Cc-EEecCCCHHHHH
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS---PSKKSEAVERLG----AD-SFLVSRDQDEMQ  101 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~---~~~~~~~~~~~g----~~-~v~~~~~~~~~~  101 (220)
                      ..+|+....--.++++||+|+|++|.+++..+...|+ +|+++.++   .++.+.++++++    .. .++...+.+.+.
T Consensus       142 ~~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~  221 (315)
T 3tnl_A          142 MRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLR  221 (315)
T ss_dssp             HHHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred             HHHHHHcCCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHH
Confidence            3445443322468899999999999999999999999 89999999   666666555443    22 234455544454


Q ss_pred             HhcCCccEEEEcCCC
Q 027668          102 AAMGTMDGIIDTVSA  116 (220)
Q Consensus       102 ~~~~~~d~vid~~g~  116 (220)
                      +....+|+||+|++.
T Consensus       222 ~~l~~aDiIINaTp~  236 (315)
T 3tnl_A          222 KEIAESVIFTNATGV  236 (315)
T ss_dssp             HHHHTCSEEEECSST
T ss_pred             hhhcCCCEEEECccC
Confidence            445589999999864

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=98.23  E-value=2.8e-05  Score=57.84  Aligned_cols=75  Identities=21%  Similarity=0.338  Sum_probs=57.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-CcE-EecCCCHHHHHHhc---CCccEEEEcCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADS-FLVSRDQDEMQAAM---GTMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~~~-v~~~~~~~~~~~~~---~~~d~vid~~g  115 (220)
                      +++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+++. ... ..|-.+.+.+++..   +++|++|+++|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag   85 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAA   85 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECCc
Confidence            5789999997 999999999999999999999999877766655553 332 23555666665554   36899999998


Q ss_pred             C
Q 027668          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        86 ~   86 (244)
T 3d3w_A           86 V   86 (244)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=98.22  E-value=1.3e-05  Score=59.86  Aligned_cols=76  Identities=14%  Similarity=0.230  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE---ecCCCHHHHHHhc---CCccEEEEc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAAM---GTMDGIIDT  113 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~~---~~~d~vid~  113 (220)
                      .++++|||.|+ |.+|..+++.+...|++|++++++.++.+.+.++++....   .|..+.+.+.++.   +++|++|++
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~   91 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILVCN   91 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEEEC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEEEC
Confidence            57889999997 9999999999999999999999998887777666654322   2444555554433   379999999


Q ss_pred             CCC
Q 027668          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        92 Ag~   94 (249)
T 3f9i_A           92 AGI   94 (249)
T ss_dssp             CC-
T ss_pred             CCC
Confidence            985

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=98.21  E-value=2e-05  Score=58.95  Aligned_cols=75  Identities=21%  Similarity=0.344  Sum_probs=56.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE----EecCCCHHHHHHh------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS----FLVSRDQDEMQAA------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~----v~~~~~~~~~~~~------~~~~d~v  110 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.++++...    ..|-.+.+.+++.      .+++|++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~l   89 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSIL   89 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcEE
Confidence            5689999997 999999999999999999999999887766655555322    2344555444433      2589999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        90 i~~Ag~   95 (254)
T 2wsb_A           90 VNSAGI   95 (254)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999985

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=98.21  E-value=1.3e-05  Score=60.70  Aligned_cols=77  Identities=25%  Similarity=0.361  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccE
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~  109 (220)
                      -.|+++||.|+ |.+|.++++.+...|++|++++++.++.+++.++++....   .|-.+.+.++++       .+++|+
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  104 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGIDI  104 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSCCE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            35789999997 9999999999999999999999998888887777775322   244455444332       248999


Q ss_pred             EEEcCCCc
Q 027668          110 IIDTVSAV  117 (220)
Q Consensus       110 vid~~g~~  117 (220)
                      +|+++|..
T Consensus       105 lvnnAg~~  112 (266)
T 3grp_A          105 LVNNAGIT  112 (266)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99999863

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=98.21  E-value=1.1e-05  Score=60.49  Aligned_cols=76  Identities=22%  Similarity=0.328  Sum_probs=57.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.+.++..   ...|-.+.+.++++       .+++|++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   87 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDIL   87 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5789999997 99999999999999999999999988777776665532   22355555444332       2489999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      |+++|..
T Consensus        88 v~nAg~~   94 (248)
T 3op4_A           88 VNNAGIT   94 (248)
T ss_dssp             EECCCCC
T ss_pred             EECCCCC
Confidence            9999853

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.21  E-value=1.9e-05  Score=53.29  Aligned_cols=76  Identities=17%  Similarity=0.202  Sum_probs=57.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHh-cCCccEEEEcCCCcc
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAVH  118 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~~  118 (220)
                      +.+|+|+|+|.+|..+++.+...|.+|+++++++++.+.+.+.+|...+. +..+.+.+.+. ..++|+||-|++...
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~   81 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE   81 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCch
Confidence            35799999999999999999999999999999888777775556765333 33344444433 358999999998763

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.20  E-value=1.3e-05  Score=59.67  Aligned_cols=101  Identities=15%  Similarity=0.057  Sum_probs=71.5

Q ss_pred             hhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCC--c-EEecCCCHHHHHHh-c
Q 027668           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA--D-SFLVSRDQDEMQAA-M  104 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~--~-~v~~~~~~~~~~~~-~  104 (220)
                      +.+.... +.++++||.+|+| .|..+..+++. +.+++.++.+++..+.+.+.   .+.  . .++..+-.+   .. .
T Consensus        82 ~~~~~~~-~~~~~~vldiG~G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~---~~~~  155 (248)
T 2yvl_A           82 YIALKLN-LNKEKRVLEFGTG-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKD---AEVP  155 (248)
T ss_dssp             HHHHHTT-CCTTCEEEEECCT-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTT---SCCC
T ss_pred             HHHHhcC-CCCCCEEEEeCCC-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhh---cccC
Confidence            3444443 6899999999998 59999999998 88999999998876666443   232  1 122211111   11 1


Q ss_pred             -CCccEEEEcCCCc-ccHHHHHhccccCCEEEEecC
Q 027668          105 -GTMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       105 -~~~d~vid~~g~~-~~~~~~~~~l~~~g~iv~~g~  138 (220)
                       ++||+||...+.+ ..+..+.+.|+++|+++....
T Consensus       156 ~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          156 EGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             TTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             CCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence             3799999887765 567889999999999988643

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=98.20  E-value=6.2e-06  Score=62.96  Aligned_cols=75  Identities=20%  Similarity=0.261  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC----Cc-E--EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----AD-S--FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g----~~-~--v~~~~~~~~~~~~-------~~~  106 (220)
                      .|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++.    .. .  ..|-.+.+.++++       .++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  111 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR  111 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 999999999999999999999999887666554442    11 1  2355555444332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       112 iD~lvnnAG~  121 (281)
T 4dry_A          112 LDLLVNNAGS  121 (281)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=98.20  E-value=1.3e-05  Score=60.95  Aligned_cols=76  Identities=17%  Similarity=0.205  Sum_probs=58.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.++++...   ..|-.+.+.+++.       .+++|++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l   83 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL   83 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            4678999997 999999999999999999999999988888777766422   2344555444332       2489999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      |+++|..
T Consensus        84 v~~Ag~~   90 (281)
T 3m1a_A           84 VNNAGRT   90 (281)
T ss_dssp             EECCCCE
T ss_pred             EECCCcC
Confidence            9999853

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.18  E-value=2.6e-05  Score=58.93  Aligned_cols=100  Identities=23%  Similarity=0.350  Sum_probs=69.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |.+|.++++.+...|++|+++++++++.+++.++++...   ..|-.+.+.+++.       .+++|++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   84 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   84 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence            4688999997 999999999999999999999999887777766665321   2344555444332       2478999


Q ss_pred             EEcCCCcc-------------------------cHHHHHhccccCCEEEEecCCCC
Q 027668          111 IDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       111 id~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      |+++|...                         ..+.++..++++|+++.+++...
T Consensus        85 vnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           85 AHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             EEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence            99987431                         01223334434799999987543

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=98.18  E-value=3e-05  Score=57.83  Aligned_cols=75  Identities=19%  Similarity=0.367  Sum_probs=57.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++|...+ .|-.+.+.+++.       .+++|++|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn   83 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999997 9999999999999999999999998877777666664332 355555444332       247999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        84 ~Ag~   87 (245)
T 1uls_A           84 YAGI   87 (245)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9985

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=98.18  E-value=3.9e-05  Score=58.07  Aligned_cols=76  Identities=24%  Similarity=0.318  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCcE---EecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~-------~~  105 (220)
                      -.++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+++    +...   ..|-.+.+.++++       .+
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG   98 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45789999997 99999999999999999999999987666554443    5332   2355555444332       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus        99 ~iD~lvnnAg~  109 (267)
T 1vl8_A           99 KLDTVVNAAGI  109 (267)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            89999999985

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=98.17  E-value=1.9e-05  Score=58.60  Aligned_cols=74  Identities=16%  Similarity=0.166  Sum_probs=56.1

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEEE
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~vi  111 (220)
                      ++++||.|+ |++|.++++.+...|++|++++++.++.+++.++++..   ...|-.+.+.++++       .+++|++|
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv   82 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL   82 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            578999997 99999999999999999999999988877776665432   12344454444322       24799999


Q ss_pred             EcCCC
Q 027668          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        83 nnAg~   87 (235)
T 3l6e_A           83 HCAGT   87 (235)
T ss_dssp             EECCC
T ss_pred             ECCCC
Confidence            99886

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=98.16  E-value=1.7e-05  Score=59.98  Aligned_cols=76  Identities=16%  Similarity=0.295  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.++.+.+.+++   +...   ..|-.+.+.++++       .+++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999997 99999999999999999999999988776665544   4322   2355555444332       2489


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|+++|..
T Consensus        83 D~lVnnAG~~   92 (264)
T 3tfo_A           83 DVLVNNAGVM   92 (264)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999999863

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=98.16  E-value=3.1e-05  Score=58.28  Aligned_cols=75  Identities=17%  Similarity=0.286  Sum_probs=58.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |.+|.++++.+...|++|++++++.++.+++.++++...   ..|-.+.+.++++       .+++|++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   87 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDIL   87 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            4689999997 899999999999999999999999988888777776432   2344454443332       2489999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        88 i~~Ag~   93 (261)
T 3n74_A           88 VNNAGI   93 (261)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999885

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=98.16  E-value=1.2e-05  Score=61.91  Aligned_cols=76  Identities=22%  Similarity=0.274  Sum_probs=56.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~  106 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++.++.+.+.+++   +..   ...|-.+.+.++++       .++
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            36789999997 99999999999999999999999988776665443   332   12355555444332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       109 id~lvnnAg~  118 (301)
T 3tjr_A          109 VDVVFSNAGI  118 (301)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999985

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=98.15  E-value=2.2e-05  Score=60.05  Aligned_cols=76  Identities=13%  Similarity=0.154  Sum_probs=59.6

Q ss_pred             CCCCEEEEEc-CchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCc-EEecCCCHHHHHHhcCCccEEEEcC
Q 027668           41 KPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GAD-SFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G-~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~-~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      .++++++|.| +|++|.+++..+...|++|++++++.++.+++.+++    +.. ...+..+.+.+.+....+|++|+++
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~a  196 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG  196 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECC
Confidence            4678999999 599999999999999999999999987766665544    322 2345666666777667899999999


Q ss_pred             CC
Q 027668          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      |.
T Consensus       197 g~  198 (287)
T 1lu9_A          197 AI  198 (287)
T ss_dssp             CT
T ss_pred             Cc
Confidence            74

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=98.14  E-value=4.1e-05  Score=57.22  Aligned_cols=75  Identities=15%  Similarity=0.255  Sum_probs=55.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc-ccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~-~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~  109 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++ ++.+...++.+...   ..|-.+.+.++++       .+++|+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   85 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCCE
Confidence            4688999997 9999999999999999999999987 55544335555422   2345555544433       358999


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|+++|.
T Consensus        86 lv~nAg~   92 (249)
T 2ew8_A           86 LVNNAGI   92 (249)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999985

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.14  E-value=7.4e-06  Score=62.23  Aligned_cols=86  Identities=21%  Similarity=0.302  Sum_probs=60.4

Q ss_pred             hhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHhcCCcc
Q 027668           30 VYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        30 a~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d  108 (220)
                      ...+|+..+.--++++++|+|+|++|.++++.+...|++|+++.++.++.+.+.++++.. .+ +..+.+.+.+  +++|
T Consensus       106 ~~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~-~~~~~~~~~~--~~~D  182 (271)
T 1nyt_A          106 LLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSI-QALSMDELEG--HEFD  182 (271)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSE-EECCSGGGTT--CCCS
T ss_pred             HHHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCe-eEecHHHhcc--CCCC
Confidence            334454433223678999999999999999999999999999999988877777776531 11 1111112211  5899


Q ss_pred             EEEEcCCCcc
Q 027668          109 GIIDTVSAVH  118 (220)
Q Consensus       109 ~vid~~g~~~  118 (220)
                      ++|+|++...
T Consensus       183 ivVn~t~~~~  192 (271)
T 1nyt_A          183 LIINATSSGI  192 (271)
T ss_dssp             EEEECCSCGG
T ss_pred             EEEECCCCCC
Confidence            9999998763

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=98.14  E-value=2.5e-05  Score=58.64  Aligned_cols=75  Identities=25%  Similarity=0.259  Sum_probs=56.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHhc------CCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM------GTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~------~~~d  108 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.++.+.+.+++   |...   ..|-.+.+.++++.      +++|
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id   85 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLE   85 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCce
Confidence            5689999997 89999999999999999999999988877665544   4321   23445554433222      5899


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|+++|.
T Consensus        86 ~lv~nAg~   93 (252)
T 3h7a_A           86 VTIFNVGA   93 (252)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999985

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=98.13  E-value=2.6e-05  Score=58.77  Aligned_cols=75  Identities=20%  Similarity=0.221  Sum_probs=56.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc---EEecCCCHHHHHHhc-------CCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.++++..   ...|-.+.+.+++..       +++|++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~l   85 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHVL   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4688999997 99999999999999999999999987776665555422   123555554444332       489999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        86 v~~Ag~   91 (260)
T 1nff_A           86 VNNAGI   91 (260)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999885

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=98.13  E-value=1.8e-05  Score=59.65  Aligned_cols=75  Identities=11%  Similarity=0.102  Sum_probs=56.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .++++||.|+ |.+|.++++.+...|++|+++++++++..+..++.+...+ .|-.+.+.++++       .+++|++|+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~  105 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAVVH  105 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            4678999997 9999999999999999999999998765555566665433 355555444332       248999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus       106 nAg~  109 (260)
T 3gem_A          106 NASE  109 (260)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9985

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=98.13  E-value=4.7e-05  Score=57.52  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-----CCcE---EecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-----g~~~---v~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++     +...   ..|-.+.+.++++       .+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5689999997 99999999999999999999999987665554333     4321   2355555444332       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus        92 ~id~lv~nAg~  102 (267)
T 1iy8_A           92 RIDGFFNNAGI  102 (267)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999874

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=98.13  E-value=4.4e-05  Score=57.21  Aligned_cols=76  Identities=17%  Similarity=0.252  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----C--CcE-EecC--CCHHHHHHh-------
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----G--ADS-FLVS--RDQDEMQAA-------  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g--~~~-v~~~--~~~~~~~~~-------  103 (220)
                      -.++++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++    +  ... ..|-  .+.+.++++       
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            45789999997 99999999999999999999999988766654433    2  222 2343  444333322       


Q ss_pred             cCCccEEEEcCCC
Q 027668          104 MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ~~~~d~vid~~g~  116 (220)
                      .+++|++|+++|.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2489999999985

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.12  E-value=2.5e-05  Score=56.63  Aligned_cols=101  Identities=14%  Similarity=0.162  Sum_probs=69.3

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc---EEecCCCHHHHHHhcCCc
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~  107 (220)
                      +.... +.++++||-+|+|. |..++.+++. +.+|+.++.+++..+.+.+.   +|..   .++..+-.+.+. ....|
T Consensus        48 l~~l~-~~~~~~vLDlGcG~-G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~-~~~~~  123 (204)
T 3njr_A           48 LAALA-PRRGELLWDIGGGS-GSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALA-DLPLP  123 (204)
T ss_dssp             HHHHC-CCTTCEEEEETCTT-CHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGT-TSCCC
T ss_pred             HHhcC-CCCCCEEEEecCCC-CHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcc-cCCCC
Confidence            34444 68899999999986 8888888888 88999999999876665433   3432   223222222111 12379


Q ss_pred             cEEEEcCCCcc-cHHHHHhccccCCEEEEecC
Q 027668          108 DGIIDTVSAVH-PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       108 d~vid~~g~~~-~~~~~~~~l~~~g~iv~~g~  138 (220)
                      |+|+...+... .++.+.+.|+++|+++....
T Consensus       124 D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          124 EAVFIGGGGSQALYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             SEEEECSCCCHHHHHHHHHHSCTTCEEEEEEC
T ss_pred             CEEEECCcccHHHHHHHHHhcCCCcEEEEEec
Confidence            99997654432 46778889999999988654

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.12  E-value=3.5e-05  Score=59.24  Aligned_cols=105  Identities=14%  Similarity=0.073  Sum_probs=71.5

Q ss_pred             hhhhHhcc-CCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCc--EEecCCCHHHHHHhcCC
Q 027668           31 YSPLRFYG-LDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGAD--SFLVSRDQDEMQAAMGT  106 (220)
Q Consensus        31 ~~~l~~~~-~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~  106 (220)
                      ..+|.... .--++++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+.++++..  .+.+   .+...+...+
T Consensus       128 ~~~l~~~~~~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~---~~~~~~~~~~  204 (297)
T 2egg_A          128 VQALEEEMNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS---LAEAETRLAE  204 (297)
T ss_dssp             HHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC---HHHHHHTGGG
T ss_pred             HHHHHHhCCCCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee---HHHHHhhhcc
Confidence            34454433 12367899999999999999999999998 9999999988888887787752  2221   2334444568


Q ss_pred             ccEEEEcCCCcccH-----HHHHhccccCCEEEEecC
Q 027668          107 MDGIIDTVSAVHPL-----MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       107 ~d~vid~~g~~~~~-----~~~~~~l~~~g~iv~~g~  138 (220)
                      +|+||+|++....-     ......++++..++.+..
T Consensus       205 aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          205 YDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             CSEEEECSCTTCSSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred             CCEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            99999999875310     011234556666666554

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.11  E-value=3.2e-05  Score=56.60  Aligned_cols=97  Identities=5%  Similarity=0.067  Sum_probs=68.3

Q ss_pred             CEEEEEcC-chHHHHHHHHHH-HCCCeEEEEeCCcc-cHHHHHHHc-CCcE-EecCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAK-AMGVKVTVISTSPS-KKSEAVERL-GADS-FLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~-~~g~~v~~~~~~~~-~~~~~~~~~-g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      ++|||.|+ |.+|..+++.+. ..|++|++++++++ +.+.+.... +... ..|..+.+.+.+...++|++|+++|...
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            56999997 999999999888 89999999999987 655543111 2222 2355667777777789999999998642


Q ss_pred             c-HHHHHhcccc--CCEEEEecCCC
Q 027668          119 P-LMPLIGLLKS--QGKLVLLGAPE  140 (220)
Q Consensus       119 ~-~~~~~~~l~~--~g~iv~~g~~~  140 (220)
                      . .+.+++.++.  .++++.++...
T Consensus        86 ~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           86 SDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             hhHHHHHHHHHhcCCCeEEEEeece
Confidence            1 3344455543  36888877644

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=98.10  E-value=3.1e-05  Score=58.91  Aligned_cols=75  Identities=16%  Similarity=0.174  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCC--c---EEecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA--D---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~--~---~v~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.++   .+.  .   ...|-.+.+.++++       .+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            5689999997 9999999999999999999999987766554333   231  1   11344555444332       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus       111 ~iD~vi~~Ag~  121 (279)
T 1xg5_A          111 GVDICINNAGL  121 (279)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999985

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.09  E-value=4.8e-05  Score=60.27  Aligned_cols=94  Identities=14%  Similarity=0.173  Sum_probs=71.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      -+|+|+|+|.+|..+++.+.. ..+|.+++++.++.+.+ +++.....+|..+.+.+.+...+.|+||+|++.......+
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~-~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~v~   94 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKV-KEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFKSI   94 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHH-TTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHH-hccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccchHH
Confidence            369999999999999988754 46899999988777665 3333334457777888888888999999999876445556


Q ss_pred             HhccccCCEEEEecCC
Q 027668          124 IGLLKSQGKLVLLGAP  139 (220)
Q Consensus       124 ~~~l~~~g~iv~~g~~  139 (220)
                      -.+++.+-.++.+...
T Consensus        95 ~~~~~~g~~yvD~s~~  110 (365)
T 3abi_A           95 KAAIKSKVDMVDVSFM  110 (365)
T ss_dssp             HHHHHHTCEEEECCCC
T ss_pred             HHHHhcCcceEeeecc
Confidence            6778888888887643

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=98.09  E-value=4.7e-05  Score=57.20  Aligned_cols=75  Identities=20%  Similarity=0.282  Sum_probs=56.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC---Cc---EEecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---AD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g---~~---~v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.++.+++.+++.   ..   ...|-.+.+.++++       .+++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   84 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI   84 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5688999997 999999999999999999999999887777655543   22   12345555444332       2489


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        85 d~lv~nAg~   93 (257)
T 3imf_A           85 DILINNAAG   93 (257)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=98.09  E-value=6e-05  Score=57.14  Aligned_cols=99  Identities=19%  Similarity=0.323  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc-ccHHHHHH---HcCCcE---EecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~-~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~  105 (220)
                      -.|+++||.|+ |++|.++++.+...|++|+++++.. ++.+.+.+   +.|...   ..|-.+.+.+++.       .+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            36789999997 9999999999999999999886654 33333333   335332   2344555444332       24


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCC
Q 027668          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       106 ~~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ++|++|+++|...                         ..+.+...++++|+++.++..
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A          109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence            8999999998631                         123455567778999998764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=98.09  E-value=7.8e-05  Score=57.13  Aligned_cols=98  Identities=14%  Similarity=0.216  Sum_probs=67.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHH-H---HHHcCCcEE---ecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSE-A---VERLGADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~-~---~~~~g~~~v---~~~~~~~~~~~~-------~~~  106 (220)
                      .|+++||.|+ |++|.++++.+...|++|+++++++++..+ +   .++.|....   .|-.+.+.++++       .++
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  125 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLGS  125 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 999999999999999999999988653222 2   233443322   244555444332       248


Q ss_pred             ccEEEEcCCCcc--------------------------cHHHHHhccccCCEEEEecCC
Q 027668          107 MDGIIDTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~vid~~g~~~--------------------------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      +|++|+++|...                          ..+.++..++++|+++.+++.
T Consensus       126 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~  184 (291)
T 3ijr_A          126 LNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI  184 (291)
T ss_dssp             CCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred             CCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence            999999987521                          123455566778999998764

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=98.08  E-value=5.1e-05  Score=57.72  Aligned_cols=77  Identities=16%  Similarity=0.214  Sum_probs=57.0

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC--c-EEecCCCHHHHHHhc-------CC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA--D-SFLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~--~-~v~~~~~~~~~~~~~-------~~  106 (220)
                      -.|+++||.|+ |.+|.++++.+...|++|+++++++++.+.+.+++   +.  . ...|-.+.+.++++.       ++
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  109 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGG  109 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999997 99999999999999999999999988776655443   32  2 123555555444332       48


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++|+++|..
T Consensus       110 iD~lvnnAg~~  120 (276)
T 3r1i_A          110 IDIAVCNAGIV  120 (276)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            99999999863

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=98.08  E-value=4.5e-05  Score=57.17  Aligned_cols=75  Identities=20%  Similarity=0.293  Sum_probs=56.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+++.++++....   .|-.+.+.+++.       .+++|++
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   84 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4688999997 9999999999999999999999998877776666654322   244444443322       2478999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        85 v~~Ag~   90 (253)
T 1hxh_A           85 VNNAGI   90 (253)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999985

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=98.08  E-value=1.9e-05  Score=61.04  Aligned_cols=87  Identities=16%  Similarity=0.221  Sum_probs=59.3

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC---cccHHHHHHHcC----Cc-EEecCCCHHHHH
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS---PSKKSEAVERLG----AD-SFLVSRDQDEMQ  101 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~---~~~~~~~~~~~g----~~-~v~~~~~~~~~~  101 (220)
                      ..+|+....--.++++||+|+|++|.+++..+...|+ +|+++.|+   .++.+.++++++    .. .+++..+.+...
T Consensus       136 ~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~  215 (312)
T 3t4e_A          136 IRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFT  215 (312)
T ss_dssp             HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred             HHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhH
Confidence            3445443322467899999999999999999999999 89999999   666666655443    22 233444432223


Q ss_pred             HhcCCccEEEEcCCCc
Q 027668          102 AAMGTMDGIIDTVSAV  117 (220)
Q Consensus       102 ~~~~~~d~vid~~g~~  117 (220)
                      +....+|+||+|++..
T Consensus       216 ~~l~~~DiIINaTp~G  231 (312)
T 3t4e_A          216 EALASADILTNGTKVG  231 (312)
T ss_dssp             HHHHHCSEEEECSSTT
T ss_pred             hhccCceEEEECCcCC
Confidence            3334689999998754

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=98.08  E-value=5.1e-05  Score=57.31  Aligned_cols=99  Identities=14%  Similarity=0.180  Sum_probs=66.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-----C--c-EEecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-----A--D-SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-----~--~-~v~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+++.     .  . ...|-.+.+.+.+.       .+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            5688999997 999999999999999999999998776555433332     1  1 12344555444332       24


Q ss_pred             CccEEEEcCCCcc--cH---------------HHHHhcccc-----CCEEEEecCCC
Q 027668          106 TMDGIIDTVSAVH--PL---------------MPLIGLLKS-----QGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~vid~~g~~~--~~---------------~~~~~~l~~-----~g~iv~~g~~~  140 (220)
                      ++|++|+++|...  .+               +.++..+++     +|+++.+++..
T Consensus        86 ~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  142 (267)
T 2gdz_A           86 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  142 (267)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCcc
Confidence            7899999998531  11               223444433     58899887643

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=98.07  E-value=3e-05  Score=58.92  Aligned_cols=75  Identities=17%  Similarity=0.306  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---C---C--cE-EecCCCHHHHHHhc-------
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G---A--DS-FLVSRDQDEMQAAM-------  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g---~--~~-v~~~~~~~~~~~~~-------  104 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++   +   .  .. ..|-.+.+.+++..       
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   84 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHHc
Confidence            4678999997 99999999999999999999999987776665554   2   1  11 23445554443322       


Q ss_pred             CCccEEEEcCCC
Q 027668          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~vid~~g~  116 (220)
                      +++|++|+++|.
T Consensus        85 g~id~lv~~Ag~   96 (278)
T 1spx_A           85 GKLDILVNNAGA   96 (278)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEEEECCCC
Confidence            489999999875

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=98.07  E-value=6.5e-05  Score=56.58  Aligned_cols=76  Identities=17%  Similarity=0.278  Sum_probs=56.0

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+++   +...   ..|-.+.+.++++       .+.
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  106 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR  106 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            35789999997 99999999999999999999999988766654443   3321   2345555444332       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       107 id~lv~~Ag~  116 (262)
T 3rkr_A          107 CDVLVNNAGV  116 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999986

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=98.07  E-value=2.9e-05  Score=58.64  Aligned_cols=98  Identities=21%  Similarity=0.245  Sum_probs=66.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHH-CCCeEEEEeCCcccHHHHHHHc---CC--cE-EecCCCHHHHHHhc-------CC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKA-MGVKVTVISTSPSKKSEAVERL---GA--DS-FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~---g~--~~-v~~~~~~~~~~~~~-------~~  106 (220)
                      +++++||.|+ |.+|..+++.+.. .|++|++++++.++.+.+.+++   +.  .. ..|-.+.+.++++.       ++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            5688999997 9999999998888 9999999999877655544433   32  22 23445544443322       48


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCC
Q 027668          107 MDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      +|++|.++|...                         .++.++..++++|+++.++..
T Consensus        83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~  140 (276)
T 1wma_A           83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  140 (276)
T ss_dssp             EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECCh
Confidence            999999987531                         112234445556899988764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=98.07  E-value=4.2e-05  Score=57.70  Aligned_cols=99  Identities=12%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             CCCEEEEEcC-ch--HHHHHHHHHHHCCCeEEEEeCCcccHHH---HHHHcCC---cE-EecCCCHHHHHHh-------c
Q 027668           42 PGMHVGVVGL-GG--LGHVAVKFAKAMGVKVTVISTSPSKKSE---AVERLGA---DS-FLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~--~G~~~~~~~~~~g~~v~~~~~~~~~~~~---~~~~~g~---~~-v~~~~~~~~~~~~-------~  104 (220)
                      .++++||.|+ |.  +|.++++.+...|++|+++++++...+.   +.++++.   .. ..|-.+.+.++++       .
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            5789999996 66  9999999999999999999988643332   3233332   11 2344444433322       2


Q ss_pred             CCccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          105 GTMDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       105 ~~~d~vid~~g~~~-----------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +++|++|+++|...                             ..+.++..++++|+++.+++..
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  150 (266)
T 3oig_A           86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLG  150 (266)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGG
T ss_pred             CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence            48999999987531                             1233455667789999987654

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=98.07  E-value=1.4e-05  Score=60.41  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=55.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-----CCc---EEecCCCHHHHHHhc---CCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GAD---SFLVSRDQDEMQAAM---GTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-----g~~---~v~~~~~~~~~~~~~---~~~d~  109 (220)
                      .++++||.|+ |++|.++++.+...|++|+++++++++.++..+++     +..   ...|..+.+.+++..   +++|+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   88 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI   88 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence            5688999997 99999999999999999999999987765554433     221   122444555444433   48999


Q ss_pred             EEEcCCCc
Q 027668          110 IIDTVSAV  117 (220)
Q Consensus       110 vid~~g~~  117 (220)
                      +|+++|..
T Consensus        89 lv~nAg~~   96 (267)
T 3t4x_A           89 LINNLGIF   96 (267)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99999863

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=98.06  E-value=7.9e-05  Score=55.02  Aligned_cols=74  Identities=16%  Similarity=0.285  Sum_probs=55.1

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-CcE-EecCCCHHHHHHh-------cCCccEEEE
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADS-FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~~~-v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      ++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.++++ ... ..|-.+.+.+++.       .+++|++|+
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li~   84 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALVN   84 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            578999997 999999999999999999999999887776655554 322 2344555444332       247999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        85 ~Ag~   88 (234)
T 2ehd_A           85 NAGV   88 (234)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9885

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.06  E-value=2e-05  Score=58.35  Aligned_cols=97  Identities=16%  Similarity=0.246  Sum_probs=67.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-cEEe-cCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFL-VSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v~-~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      .+.+|||.|+ |.+|..+++.+...|++|+++++++++.+.+ ...++ ..+. |..  +.+.+..+++|+||.++|...
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~-~~~~~~~~~~~Dl~--~~~~~~~~~~D~vi~~ag~~~   96 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL-RERGASDIVVANLE--EDFSHAFASIDAVVFAAGSGP   96 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHTTCSEEEECCTT--SCCGGGGTTCSEEEECCCCCT
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHH-HhCCCceEEEcccH--HHHHHHHcCCCEEEECCCCCC
Confidence            5789999997 9999999999999999999999998887666 34466 4332 222  334444568999999998642


Q ss_pred             -------------cHHHHHhccc--cCCEEEEecCCCC
Q 027668          119 -------------PLMPLIGLLK--SQGKLVLLGAPEK  141 (220)
Q Consensus       119 -------------~~~~~~~~l~--~~g~iv~~g~~~~  141 (220)
                                   .....++.++  ..++++.++....
T Consensus        97 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  134 (236)
T 3e8x_A           97 HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT  134 (236)
T ss_dssp             TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence                         0112333332  2478998887543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.06  E-value=2e-05  Score=58.31  Aligned_cols=102  Identities=15%  Similarity=0.201  Sum_probs=70.5

Q ss_pred             hhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcC----CcEEec-CCCHHHHHHhcC
Q 027668           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLG----ADSFLV-SRDQDEMQAAMG  105 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g----~~~v~~-~~~~~~~~~~~~  105 (220)
                      ++..+. ++||++||=+|+|+ |..+..+++..|.  +|++++.+++..+.+.+...    ...+.. ..+.+......+
T Consensus        69 gl~~l~-ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~  146 (233)
T 4df3_A           69 GLIELP-VKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVE  146 (233)
T ss_dssp             TCSCCC-CCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCC
T ss_pred             chhhcC-CCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccc
Confidence            344554 79999999999975 8889999998876  89999999988777755443    233332 222333222234


Q ss_pred             CccEEEEcCCCcc----cHHHHHhccccCCEEEEe
Q 027668          106 TMDGIIDTVSAVH----PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       106 ~~d~vid~~g~~~----~~~~~~~~l~~~g~iv~~  136 (220)
                      .+|+||.....+.    .+..+.+.|+++|++++.
T Consensus       147 ~vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          147 GVDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             CEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            7899986555543    245567789999999875

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=98.06  E-value=5e-05  Score=57.99  Aligned_cols=76  Identities=20%  Similarity=0.337  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .+++++||.|+ |++|.++++.+...|++|++++++.++.+++.+++   +...   ..|-.+.+.++++       .++
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35789999997 99999999999999999999999988777765554   2221   2344555444322       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       106 iD~lVnnAg~  115 (283)
T 3v8b_A          106 LDIVVANAGI  115 (283)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=98.05  E-value=4.8e-05  Score=57.10  Aligned_cols=74  Identities=19%  Similarity=0.274  Sum_probs=53.7

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCcc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~d  108 (220)
                      ++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++   +...   ..|-.+.+.++++       .+++|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            468999997 99999999999999999999999887665554433   4321   2345555444332       24899


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|+++|.
T Consensus        82 ~lv~nAg~   89 (256)
T 1geg_A           82 VIVNNAGV   89 (256)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999975

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=98.05  E-value=5.1e-05  Score=55.95  Aligned_cols=73  Identities=18%  Similarity=0.191  Sum_probs=56.0

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC--c-EEecCCCHHHHHHhcC----CccEEEEcCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--D-SFLVSRDQDEMQAAMG----TMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~--~-~v~~~~~~~~~~~~~~----~~d~vid~~g  115 (220)
                      +++||.|+ |++|.++++.+...|++|+++++++++.+.+.++++.  . ...|-.+.+.++++..    .+|++|+++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag   81 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAG   81 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCC
Confidence            35899997 9999999999999999999999999888887776653  2 2235556665555432    4699999998


Q ss_pred             C
Q 027668          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        82 ~   82 (230)
T 3guy_A           82 S   82 (230)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=98.05  E-value=2.5e-05  Score=60.76  Aligned_cols=75  Identities=20%  Similarity=0.280  Sum_probs=55.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC--c---EEecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA--D---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~--~---~v~~~~~~~~~~~~-------~~  105 (220)
                      .+++|||.|+ |.+|..+++.+...|++|++++++.++.+.+.+++   +.  .   ...|-.+.+.++++       .+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            5689999997 99999999999999999999999988766654443   22  1   12355555444332       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus        87 ~id~lv~nAg~   97 (319)
T 3ioy_A           87 PVSILCNNAGV   97 (319)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            89999999985

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=98.05  E-value=3.4e-05  Score=58.53  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC--c-EEecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA--D-SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~--~-~v~~~~~~~~~~~~-------~~~  106 (220)
                      -.++++||.|+ |++|.++++.+...|++|+++++++++.+++.+++   +.  . ...|-.+.+.++++       .++
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGA  105 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            35688999997 99999999999999999999999987766554433   32  2 22355555444332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       106 iD~lvnnAg~  115 (270)
T 3ftp_A          106 LNVLVNNAGI  115 (270)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=98.04  E-value=3.5e-05  Score=58.09  Aligned_cols=75  Identities=23%  Similarity=0.283  Sum_probs=55.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---C-Cc---EEecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G-AD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g-~~---~v~~~~~~~~~~~~-------~~~  106 (220)
                      .|+++||.|+ |.+|.++++.+...|++|++++++.++.+.+.+++   + ..   ...|-.+.+.++++       .++
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG   88 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            5789999997 99999999999999999999999988766654443   2 11   12244555444332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        89 id~lvnnAg~   98 (262)
T 3pk0_A           89 IDVVCANAGV   98 (262)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=98.04  E-value=5.7e-05  Score=57.57  Aligned_cols=99  Identities=17%  Similarity=0.225  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC------------cccHHHHH---HHcCCcE---EecCCCHHHHH
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS------------PSKKSEAV---ERLGADS---FLVSRDQDEMQ  101 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~------------~~~~~~~~---~~~g~~~---v~~~~~~~~~~  101 (220)
                      -.|+++||.|+ |++|..+++.+...|++|++++++            .++.+.+.   +..+...   ..|-.+.+.++
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   87 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVS   87 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHH
Confidence            35789999997 999999999999999999999886            33333332   2334322   23455554443


Q ss_pred             Hh-------cCCccEEEEcCCCcc-----------------------cHHHHHhccccCCEEEEecCC
Q 027668          102 AA-------MGTMDGIIDTVSAVH-----------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       102 ~~-------~~~~d~vid~~g~~~-----------------------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ++       .+++|++|+++|...                       ..+.++..++++|+++.+++.
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  155 (287)
T 3pxx_A           88 RELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence            32       248999999988631                       123345566778999998764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.03  E-value=4.9e-05  Score=53.48  Aligned_cols=103  Identities=15%  Similarity=0.174  Sum_probs=70.1

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHH---HcCCc--EEecCCCHHHHHHhcCCc
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~  107 (220)
                      +.... +.++++||.+|+|. |..+..+++.. +.+++.++.+++..+.+.+   ..|..  ..+..+..+.+....+.|
T Consensus        18 ~~~~~-~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   95 (178)
T 3hm2_A           18 ISALA-PKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNP   95 (178)
T ss_dssp             HHHHC-CCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCC
T ss_pred             HHHhc-ccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCC
Confidence            33443 68899999999986 88888988887 5599999999876666543   33432  223322223332222579


Q ss_pred             cEEEEcCCCc--ccHHHHHhccccCCEEEEecC
Q 027668          108 DGIIDTVSAV--HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       108 d~vid~~g~~--~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      |+|+......  ..++.+.+.|+++|+++....
T Consensus        96 D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           96 DVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             SEEEECC-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CEEEECCcccHHHHHHHHHHhcCCCCEEEEEee
Confidence            9999765443  257888999999999987654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=98.03  E-value=7.8e-05  Score=57.25  Aligned_cols=100  Identities=19%  Similarity=0.202  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcC-c--hHHHHHHHHHHHCCCeEEEEeCCcccHHH---HHHHcCCcEE--ecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSKKSE---AVERLGADSF--LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g--~~G~~~~~~~~~~g~~v~~~~~~~~~~~~---~~~~~g~~~v--~~~~~~~~~~~~-------~~  105 (220)
                      -.++++||.|+ |  ++|.++++.+...|++|++++++++..+.   +.++.+....  .|-.+.+.++++       .+
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35789999997 5  99999999999999999999998754332   3334453222  355555444332       24


Q ss_pred             CccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          106 TMDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~vid~~g~~~-----------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++|++|+++|...                             ..+.++..++++|+++.+++..
T Consensus       108 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~  171 (296)
T 3k31_A          108 SLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYG  171 (296)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGG
T ss_pred             CCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehh
Confidence            8999999998531                             1233445666789999987653

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=98.03  E-value=0.00012  Score=56.10  Aligned_cols=99  Identities=16%  Similarity=0.174  Sum_probs=66.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc--cHHHH---HHHcCCcEEe---cCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS--KKSEA---VERLGADSFL---VSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~--~~~~~---~~~~g~~~v~---~~~~~~~~~~~-------~~  105 (220)
                      .|+++||.|+ |++|.++++.+...|++|++++++.+  ..+.+   .++.|....+   |-.+.+.++++       .+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  127 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALG  127 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5789999997 99999999999999999999888632  22222   2344543322   33444433322       25


Q ss_pred             CccEEEEcCCCcc--------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          106 TMDGIIDTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~vid~~g~~~--------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++|++|+++|...                          ..+.++..++++|+++.++...
T Consensus       128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~  188 (294)
T 3r3s_A          128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQ  188 (294)
T ss_dssp             CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGG
T ss_pred             CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChh
Confidence            8999999998521                          1233455677789999998754

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=98.03  E-value=4.3e-05  Score=57.49  Aligned_cols=75  Identities=16%  Similarity=0.246  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-HHHHHHHc----CCcE-E--ecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERL----GADS-F--LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~~~----g~~~-v--~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++ .+.+.+++    |... .  .|-.+.+.++++       .+
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4678999997 999999999999999999999998766 55544333    4322 1  244454444332       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus        83 ~iD~lv~~Ag~   93 (260)
T 1x1t_A           83 RIDILVNNAGI   93 (260)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999885

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=98.02  E-value=6.5e-05  Score=56.01  Aligned_cols=76  Identities=21%  Similarity=0.322  Sum_probs=53.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++ ++++.+.+.++   .+...   ..|-.+.+.+++.       .++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999997 99999999999999999999998 66555444333   24321   2345555444332       248


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++|+++|..
T Consensus        83 id~lv~nAg~~   93 (246)
T 2uvd_A           83 VDILVNNAGVT   93 (246)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            99999999853

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=98.02  E-value=6.6e-05  Score=56.68  Aligned_cols=76  Identities=14%  Similarity=0.147  Sum_probs=55.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH----cCCc-E---EecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LGAD-S---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~g~~-~---v~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.++.+.+.++    .+.. .   ..|-.+.+.++++       .+
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG   86 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            5789999997 9999999999999999999999998876655443    3321 1   1345555444332       24


Q ss_pred             CccEEEEcCCCc
Q 027668          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~vid~~g~~  117 (220)
                      ++|++|+++|..
T Consensus        87 ~id~lvnnAg~~   98 (265)
T 3lf2_A           87 CASILVNNAGQG   98 (265)
T ss_dssp             SCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            899999999863

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=98.02  E-value=6.2e-05  Score=57.90  Aligned_cols=77  Identities=23%  Similarity=0.312  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---C-Cc---EEecCCCH-HHHHHh-------c
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G-AD---SFLVSRDQ-DEMQAA-------M  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g-~~---~v~~~~~~-~~~~~~-------~  104 (220)
                      ..++++||.|+ |++|.++++.+...|++|++++++.++.+++.+++   + ..   ...|-.+. +.++.+       .
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            45788999997 99999999999999999999999988766654443   2 11   12344443 433322       3


Q ss_pred             CCccEEEEcCCCc
Q 027668          105 GTMDGIIDTVSAV  117 (220)
Q Consensus       105 ~~~d~vid~~g~~  117 (220)
                      +++|++|+++|..
T Consensus        90 g~iD~lv~nAg~~  102 (311)
T 3o26_A           90 GKLDILVNNAGVA  102 (311)
T ss_dssp             SSCCEEEECCCCC
T ss_pred             CCCCEEEECCccc
Confidence            4899999999853

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=98.02  E-value=1.9e-05  Score=59.78  Aligned_cols=75  Identities=13%  Similarity=0.173  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.++.+.+. .-... ...|-.+.+.+++.       .+++|++|+
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvn   93 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN-LPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVN   93 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC-CTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh-cCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            4688999997 99999999999999999999999876544331 11111 12344554444332       248999999


Q ss_pred             cCCCc
Q 027668          113 TVSAV  117 (220)
Q Consensus       113 ~~g~~  117 (220)
                      ++|..
T Consensus        94 nAg~~   98 (266)
T 3p19_A           94 NAGMM   98 (266)
T ss_dssp             CCCCC
T ss_pred             CCCcC
Confidence            99863

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=98.01  E-value=6.5e-05  Score=57.13  Aligned_cols=76  Identities=20%  Similarity=0.247  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCcE---EecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~-------~~  105 (220)
                      -.|+++||.|+ |++|.++++.+...|++|++++++.++.++..+++    |...   ..|-.+.+.++++       .+
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g  104 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEFG  104 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35789999997 89999999999999999999999987665554433    4322   2355555444332       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus       105 ~id~lv~nAg~  115 (277)
T 4fc7_A          105 RIDILINCAAG  115 (277)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcC
Confidence            89999999984

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=98.01  E-value=1.7e-05  Score=60.06  Aligned_cols=76  Identities=18%  Similarity=0.285  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH----cCCcE---EecCCCHHHHH-------HhcCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LGADS---FLVSRDQDEMQ-------AAMGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~g~~~---v~~~~~~~~~~-------~~~~~  106 (220)
                      .++++||.|+ |.+|.++++.+...|++|++++++.++.+++.++    .+...   ..|-.+.+.++       +..++
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   98 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFGG   98 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 9999999999999999999999998776665443    34322   12444433332       22358


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++|+++|..
T Consensus        99 id~lv~nAg~~  109 (266)
T 4egf_A           99 LDVLVNNAGIS  109 (266)
T ss_dssp             CSEEEEECCCC
T ss_pred             CCEEEECCCcC
Confidence            99999998853

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=98.00  E-value=3.6e-05  Score=58.17  Aligned_cols=75  Identities=23%  Similarity=0.220  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHHH---cCCcE---EecCCCHHHHHHhc-------CC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVER---LGADS---FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++ ++++.+.+.++   .+...   ..|-.+.+.+++..       ++
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   99 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   99 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5688999997 99999999999999999999998 55554443332   34332   23445554443322       48


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       100 ~d~vi~~Ag~  109 (274)
T 1ja9_A          100 LDFVMSNSGM  109 (274)
T ss_dssp             EEEEECCCCC
T ss_pred             CCEEEECCCC
Confidence            9999999875

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=98.00  E-value=0.00011  Score=55.75  Aligned_cols=76  Identities=13%  Similarity=0.267  Sum_probs=55.0

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      -.++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++   |...   ..|-.+.+.+.+.       .++
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  108 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD  108 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence            35789999997 99999999999999999999999887665554333   4321   2344454444332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       109 iD~li~~Ag~  118 (272)
T 1yb1_A          109 VSILVNNAGV  118 (272)
T ss_dssp             CSEEEECCCC
T ss_pred             CcEEEECCCc
Confidence            9999999985

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=98.00  E-value=4.5e-05  Score=57.41  Aligned_cols=75  Identities=17%  Similarity=0.296  Sum_probs=57.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHhc-------CCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.++++...   ..|-.+.+.+++..       +++|++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   90 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDVA   90 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            5689999997 999999999999999999999999888777766666432   23445554444332       489999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        91 i~~Ag~   96 (265)
T 2o23_A           91 VNCAGI   96 (265)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999875

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=98.00  E-value=7.5e-05  Score=57.29  Aligned_cols=100  Identities=16%  Similarity=0.160  Sum_probs=67.6

Q ss_pred             CCCCEEEEEcC-ch--HHHHHHHHHHHCCCeEEEEeCCccc---HHHHHHHcCCcEE--ecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GG--LGHVAVKFAKAMGVKVTVISTSPSK---KSEAVERLGADSF--LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~--~G~~~~~~~~~~g~~v~~~~~~~~~---~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~  105 (220)
                      -.|+++||.|+ |.  +|.++++.+...|++|++++++++.   .+++.++.+....  .|-.+.+.++++       .+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46789999996 66  9999999999999999999988542   2233334443222  355555444332       24


Q ss_pred             CccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          106 TMDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~vid~~g~~~-----------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++|++|+++|...                             ..+.++..++++|+++.+++..
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~  172 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYG  172 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGG
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehh
Confidence            8999999998531                             1233455666789999987654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=98.00  E-value=7.7e-05  Score=56.26  Aligned_cols=76  Identities=13%  Similarity=0.215  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      -.++++||.|+ |.+|.++++.+...|++|++++++.++.+++.+++   |...   ..|-.+.+.++++       .++
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999997 89999999999999999999999988766655443   3322   2355555444332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        89 id~lv~nAg~   98 (264)
T 3ucx_A           89 VDVVINNAFR   98 (264)
T ss_dssp             CSEEEECCCS
T ss_pred             CcEEEECCCC
Confidence            9999999865

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=98.00  E-value=2.6e-05  Score=58.67  Aligned_cols=76  Identities=14%  Similarity=0.219  Sum_probs=55.4

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      -.|+++||.|+ |++|.++++.+...|++|++++++.++.+.+.+++   +...   ..|-.+.+.++++       .++
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   89 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK   89 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            35789999997 99999999999999999999999987766554433   4322   2344555443332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        90 id~lv~nAg~   99 (256)
T 3gaf_A           90 ITVLVNNAGG   99 (256)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999886

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=98.00  E-value=0.00013  Score=53.41  Aligned_cols=117  Identities=15%  Similarity=0.037  Sum_probs=73.1

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      -.|.+|||+|+|.+|...++.+...|++|++++.... ..+.+.++.+...+ ...-.+   ....++|+||-+++.+. 
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i-~~~~~~---~dL~~adLVIaAT~d~~-  103 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVK-RKKVGE---EDLLNVFFIVVATNDQA-  103 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEE-CSCCCG---GGSSSCSEEEECCCCTH-
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEE-ECCCCH---hHhCCCCEEEECCCCHH-
Confidence            4678999999999999999999999999999987644 23344333334433 221111   12358999999999885 


Q ss_pred             HHHHHhccccCCEEEEecCCCCCcccCccccc-cCCcEEEEeec
Q 027668          120 LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLL-TGEKIVGGSLI  162 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~-~~~~~i~~~~~  162 (220)
                      .+..+...++.|..|.........+|-.+.++ ...+++.-+..
T Consensus       104 ~N~~I~~~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~  147 (223)
T 3dfz_A          104 VNKFVKQHIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTD  147 (223)
T ss_dssp             HHHHHHHHSCTTCEEEC-----CCSEECCEEEEETTEEEEEECT
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECC
Confidence            55444444448888877665544555544443 34566655443

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.99  E-value=3.4e-05  Score=57.89  Aligned_cols=75  Identities=24%  Similarity=0.396  Sum_probs=56.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |.+|.++++.+...|++|+++++++++.+.+.++++...   ..|-.+.+.+++.       .+++|++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4688999997 999999999999999999999999887777666665322   2344555444332       2489999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        84 v~nAg~   89 (254)
T 1hdc_A           84 VNNAGI   89 (254)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999985

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.99  E-value=3.1e-05  Score=63.23  Aligned_cols=96  Identities=15%  Similarity=0.183  Sum_probs=67.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      ++.+|+|+|+|.+|..++..+... |.+|++++++.++.+.+.+..+... .++..+.+.+.+...++|+||+|++....
T Consensus        22 ~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~  101 (467)
T 2axq_A           22 MGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFH  101 (467)
T ss_dssp             -CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGH
T ss_pred             CCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhh
Confidence            457899999999999999988887 6799999999887777655445432 33555555555555689999999987522


Q ss_pred             HHHHHhccccCCEEEEec
Q 027668          120 LMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g  137 (220)
                      ......+++.+..++...
T Consensus       102 ~~v~~a~l~~g~~vvd~~  119 (467)
T 2axq_A          102 PNVVKSAIRTKTDVVTSS  119 (467)
T ss_dssp             HHHHHHHHHHTCEEEECS
T ss_pred             HHHHHHHHhcCCEEEEee
Confidence            223344566666666543

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.99  E-value=7.7e-05  Score=56.85  Aligned_cols=75  Identities=23%  Similarity=0.307  Sum_probs=55.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcEE---ecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADSF---LVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v---~~~~~~~~~~~~-------~~~~  107 (220)
                      .|+++||.|+ |++|.++++.+...|++|++++++.++.+++.+++   +....   .|-.+.+.++++       .+++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGGL   86 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 99999999999999999999999988777766555   32222   234444443332       2489


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        87 D~lvnnAg~   95 (280)
T 3tox_A           87 DTAFNNAGA   95 (280)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.98  E-value=7.2e-05  Score=56.73  Aligned_cols=76  Identities=21%  Similarity=0.301  Sum_probs=55.7

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcEE---ecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v---~~~~~~~~~~~~-------~~~  106 (220)
                      -.|+++||.|+ |++|.++++.+...|++|++++++.++.+++.+++   |....   .|-.+.+.++++       .++
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGID  103 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            35789999997 99999999999999999999999988766655443   43322   244444443332       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       104 iD~lv~nAg~  113 (271)
T 4ibo_A          104 VDILVNNAGI  113 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.98  E-value=8.6e-05  Score=56.41  Aligned_cols=76  Identities=17%  Similarity=0.205  Sum_probs=54.4

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHhc------CCc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM------GTM  107 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~------~~~  107 (220)
                      -.|+++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++   +...   ..|-.+.+.++++.      +++
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            35789999997 99999999999999999999999988766654443   4321   12333333222211      589


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus       111 D~lvnnAg~  119 (275)
T 4imr_A          111 DILVINASA  119 (275)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999985

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.98  E-value=5.9e-05  Score=56.74  Aligned_cols=98  Identities=16%  Similarity=0.257  Sum_probs=64.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEe-CCcccHHHHHH---HcCCc---EEecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~-------~~~  106 (220)
                      .|+++||.|+ |++|.++++.+...|++|+++. ++.++.+...+   +.|..   ...|-.+.+.++++       .++
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFGE   86 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            5789999997 9999999999999999999884 44444333333   23422   12344555444332       248


Q ss_pred             ccEEEEcCCCc-c-------------------------cHHHHHhccccCCEEEEecCC
Q 027668          107 MDGIIDTVSAV-H-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~vid~~g~~-~-------------------------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      +|++|+++|.. .                         ..+.++..++++|+++.+++.
T Consensus        87 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~  145 (259)
T 3edm_A           87 IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQ  145 (259)
T ss_dssp             EEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             CCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCH
Confidence            99999998743 0                         123345566668899988764

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.98  E-value=5.8e-05  Score=57.23  Aligned_cols=93  Identities=14%  Similarity=0.059  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCC--cEEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA--DSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      -.+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.++++++.  ..+....+   ...  .++|+||+|++..
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~---l~~--~~~DivInaTp~g  192 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEA---LEG--QSFDIVVNATSAS  192 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGG---GTT--CCCSEEEECSSGG
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHH---hcc--cCCCEEEECCCCC
Confidence            368899999999999999999999997 999999999888888777764  22222221   111  5799999998754


Q ss_pred             ccH---HHHHhccccCCEEEEecC
Q 027668          118 HPL---MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       118 ~~~---~~~~~~l~~~g~iv~~g~  138 (220)
                      ..-   ......++++..++.+..
T Consensus       193 m~~~~~~i~~~~l~~~~~V~DlvY  216 (272)
T 3pwz_A          193 LTADLPPLPADVLGEAALAYELAY  216 (272)
T ss_dssp             GGTCCCCCCGGGGTTCSEEEESSC
T ss_pred             CCCCCCCCCHHHhCcCCEEEEeec
Confidence            100   001234566665555433

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.97  E-value=0.0001  Score=55.79  Aligned_cols=97  Identities=18%  Similarity=0.222  Sum_probs=71.5

Q ss_pred             cccchhhhhhhhhhHhccCCCCCCEEEEEcCc-hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHH
Q 027668           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~   99 (220)
                      ..++|+...+...++....--.|++++|+|.| .+|..+++++...|+.|++..+....                     
T Consensus       139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~---------------------  197 (285)
T 3l07_A          139 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTD---------------------  197 (285)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS---------------------
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCchh---------------------
Confidence            34566666667777766544589999999975 58999999999999998877653221                     


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       100 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +.+....+|+||.++|.+..+.  -+.+++|..++.+|...
T Consensus       198 L~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDvgi~~  236 (285)
T 3l07_A          198 LKSHTTKADILIVAVGKPNFIT--ADMVKEGAVVIDVGINH  236 (285)
T ss_dssp             HHHHHTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCEE
T ss_pred             HHHhcccCCEEEECCCCCCCCC--HHHcCCCcEEEEecccC
Confidence            2234457899999999876443  35578888888888653

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.97  E-value=7.6e-06  Score=63.12  Aligned_cols=118  Identities=16%  Similarity=0.157  Sum_probs=78.3

Q ss_pred             cccchhhhhhhhhhHhc---------cCCCCCCEEEEEcCc-hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC--
Q 027668           21 APLLCAGITVYSPLRFY---------GLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--   88 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~---------~~~~~~~~vlI~G~g-~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~--   88 (220)
                      ..++|+...+...++..         +.--.|.+++|+|+| .+|..+++++...|+.|+++.++..+.......++.  
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~  225 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNK  225 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCC
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhc
Confidence            45677777777777663         312478999999997 569999999999999999988875433222233332  


Q ss_pred             cEE--ecCCCHHHHHHhcCCccEEEEcCCCccc-HHHHHhccccCCEEEEecCCC
Q 027668           89 DSF--LVSRDQDEMQAAMGTMDGIIDTVSAVHP-LMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        89 ~~v--~~~~~~~~~~~~~~~~d~vid~~g~~~~-~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ...  +...+.+.+.+....+|+||.++|.+.. +..  +.+++|..++.+|...
T Consensus       226 ~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~~vI~~--e~vk~GavVIDVgi~r  278 (320)
T 1edz_A          226 HHVEDLGEYSEDLLKKCSLDSDVVITGVPSENYKFPT--EYIKEGAVCINFACTK  278 (320)
T ss_dssp             CEEEEEEECCHHHHHHHHHHCSEEEECCCCTTCCBCT--TTSCTTEEEEECSSSC
T ss_pred             ccccccccccHhHHHHHhccCCEEEECCCCCcceeCH--HHcCCCeEEEEcCCCc
Confidence            110  0001124455556689999999998753 332  3368887888888754

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.97  E-value=8.1e-05  Score=56.01  Aligned_cols=99  Identities=15%  Similarity=0.166  Sum_probs=67.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHH--HHHcCC--c-EEecCCCHHHHHHh-------cCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEA--VERLGA--D-SFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~--~~~~g~--~-~v~~~~~~~~~~~~-------~~~~d  108 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.+.+  ..+.+.  . ...|-.+++.++++       .+++|
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~iD   85 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRLD   85 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            5789999997 8999999999999999999999987754322  123342  2 22345555443322       25899


Q ss_pred             EEEEcCCCcc------------------------cHHHHHhccc-cCCEEEEecCCC
Q 027668          109 GIIDTVSAVH------------------------PLMPLIGLLK-SQGKLVLLGAPE  140 (220)
Q Consensus       109 ~vid~~g~~~------------------------~~~~~~~~l~-~~g~iv~~g~~~  140 (220)
                      ++++++|...                        ..+.++..|+ .+|+||.+++..
T Consensus        86 iLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~  142 (258)
T 4gkb_A           86 GLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKT  142 (258)
T ss_dssp             EEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTH
T ss_pred             EEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehh
Confidence            9999998631                        1233445553 479999998753

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.97  E-value=4e-05  Score=56.03  Aligned_cols=93  Identities=15%  Similarity=0.174  Sum_probs=66.1

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-EecCCC-HHHHHHhcCCccEEEEcCCCcc---
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRD-QDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~-~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      +|||.|+ |.+|..+++.+...|++|+++++++++....   .+... ..|..+ .+.+.+...++|+||.++|...   
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~~~~   78 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGGKSL   78 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTTSSC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc---CCceEEEecccCCHHHHHHHHcCCCEEEECCcCCCCCc
Confidence            5899997 9999999999999999999999998654322   23332 235556 6777777779999999998642   


Q ss_pred             ------cHHHHHhccccC--CEEEEecCCC
Q 027668          119 ------PLMPLIGLLKSQ--GKLVLLGAPE  140 (220)
Q Consensus       119 ------~~~~~~~~l~~~--g~iv~~g~~~  140 (220)
                            .....++.++..  ++++.++...
T Consensus        79 ~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  108 (219)
T 3dqp_A           79 LKVDLYGAVKLMQAAEKAEVKRFILLSTIF  108 (219)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             EeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence                  122344444433  5888887754

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.97  E-value=6.5e-05  Score=57.17  Aligned_cols=77  Identities=19%  Similarity=0.303  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-------------CcccHHHHHH---HcCCcE---EecCCCHHHH
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-------------SPSKKSEAVE---RLGADS---FLVSRDQDEM  100 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-------------~~~~~~~~~~---~~g~~~---v~~~~~~~~~  100 (220)
                      -.|+++||.|+ |++|.++++.+...|++|+++++             +.++.+++.+   ..|...   ..|-.+.+.+
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            46789999997 99999999999999999999987             4444444433   234322   2355555444


Q ss_pred             HHh-------cCCccEEEEcCCCc
Q 027668          101 QAA-------MGTMDGIIDTVSAV  117 (220)
Q Consensus       101 ~~~-------~~~~d~vid~~g~~  117 (220)
                      +++       .+++|++|+++|..
T Consensus        93 ~~~~~~~~~~~g~id~lvnnAg~~  116 (280)
T 3pgx_A           93 RELVADGMEQFGRLDVVVANAGVL  116 (280)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCC
Confidence            332       24899999999863

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.96  E-value=9.2e-05  Score=55.57  Aligned_cols=75  Identities=19%  Similarity=0.225  Sum_probs=52.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++ +.++.+.+.++   .+...   ..|-.+.+.+.+.       .++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999997 99999999999999999999999 66554444333   24321   1244454444332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        86 id~li~~Ag~   95 (261)
T 1gee_A           86 LDVMINNAGL   95 (261)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999885

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.96  E-value=5.2e-05  Score=61.99  Aligned_cols=92  Identities=17%  Similarity=0.220  Sum_probs=71.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -.|++|.|+|.|.+|..+++.++.+|++|++++++..+..++ ...|....       .+.+.....|+|+.+++....+
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a-~~~G~~~~-------~l~ell~~aDiVi~~~~t~~lI  346 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQA-AMEGYRVV-------TMEYAADKADIFVTATGNYHVI  346 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHH-HTTTCEEC-------CHHHHTTTCSEEEECSSSSCSB
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHH-HHcCCEeC-------CHHHHHhcCCEEEECCCccccc
Confidence            578999999999999999999999999999999987654333 24455421       2445567899999998766555


Q ss_pred             -HHHHhccccCCEEEEecCCC
Q 027668          121 -MPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       121 -~~~~~~l~~~g~iv~~g~~~  140 (220)
                       ...+..|+++..++.++...
T Consensus       347 ~~~~l~~MK~gAilINvgrg~  367 (494)
T 3d64_A          347 NHDHMKAMRHNAIVCNIGHFD  367 (494)
T ss_dssp             CHHHHHHCCTTEEEEECSSSS
T ss_pred             CHHHHhhCCCCcEEEEcCCCc
Confidence             35778899999999888643

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.96  E-value=4.5e-05  Score=56.87  Aligned_cols=99  Identities=16%  Similarity=0.222  Sum_probs=67.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHHHcCCcEE---ecCCCHHHHHHhc--CCccEEEEcC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSF---LVSRDQDEMQAAM--GTMDGIIDTV  114 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v---~~~~~~~~~~~~~--~~~d~vid~~  114 (220)
                      .|+++||.|+ +++|.++++.+...|++|++++++.+ +..+..++.|....   .|-.+++.+++..  +++|++++++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNNA   87 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNNA   87 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEECC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEECC
Confidence            5789999997 89999999999999999999998753 22233355664322   2444444443333  3899999999


Q ss_pred             CCcc-------------------------cHHHHHhcc-c--cCCEEEEecCCC
Q 027668          115 SAVH-------------------------PLMPLIGLL-K--SQGKLVLLGAPE  140 (220)
Q Consensus       115 g~~~-------------------------~~~~~~~~l-~--~~g~iv~~g~~~  140 (220)
                      |...                         ..+.+++.| +  ++|+||.+++..
T Consensus        88 Gi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~  141 (247)
T 4hp8_A           88 GIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLL  141 (247)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred             CCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechh
Confidence            8642                         123345544 2  368999998754

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.96  E-value=1.6e-05  Score=58.91  Aligned_cols=97  Identities=13%  Similarity=0.168  Sum_probs=68.6

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      -.+|||.|+ |.+|..+++.+...| ++|+++++++++...+. ..++.. ..|..+.+.+.+...++|+||.+++....
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~~  101 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY-PTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDL  101 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC-CTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTTH
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc-cCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCch
Confidence            357999997 999999999999999 79999999887544321 112222 23556677777777899999999987542


Q ss_pred             ---HHHHHhcccc--CCEEEEecCCC
Q 027668          120 ---LMPLIGLLKS--QGKLVLLGAPE  140 (220)
Q Consensus       120 ---~~~~~~~l~~--~g~iv~~g~~~  140 (220)
                         .+.+++.++.  .+++|.++...
T Consensus       102 ~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A          102 DIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             hHHHHHHHHHHHHcCCCEEEEEecce
Confidence               2334454543  36899887754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.95  E-value=6.5e-05  Score=54.09  Aligned_cols=95  Identities=16%  Similarity=0.197  Sum_probs=65.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~~~--  119 (220)
                      .+|+|.|+ |.+|..+++.+...|.+|+++++++++.... ..-+...+ .|..+.+.+.+...++|+||.++|....  
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~   82 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDLS   82 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCCS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc-cCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCCCCC
Confidence            68999997 9999999999999999999999987654321 01123322 3455667777777789999999986431  


Q ss_pred             --------HHHHHhcccc--CCEEEEecCC
Q 027668          120 --------LMPLIGLLKS--QGKLVLLGAP  139 (220)
Q Consensus       120 --------~~~~~~~l~~--~g~iv~~g~~  139 (220)
                              ....++.+++  .++++.++..
T Consensus        83 ~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           83 PTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             ccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence                    2233343332  3588887664

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.95  E-value=6.2e-05  Score=57.32  Aligned_cols=75  Identities=25%  Similarity=0.337  Sum_probs=54.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC---cE---EecCCCHHHHHHh-------c
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA---DS---FLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~---~~---v~~~~~~~~~~~~-------~  104 (220)
                      .++++||.|+ |.+|.++++.+...|++|+++++++++.+.+.+++   +.   ..   ..|-.+.+.++++       .
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            5789999997 99999999999999999999999988766654443   22   11   1244454443322       2


Q ss_pred             CCccEEEEcCCC
Q 027668          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~vid~~g~  116 (220)
                      +++|++|+++|.
T Consensus        90 g~id~lv~nAg~  101 (281)
T 3svt_A           90 GRLHGVVHCAGG  101 (281)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            489999999985

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.95  E-value=4.2e-05  Score=58.54  Aligned_cols=76  Identities=18%  Similarity=0.203  Sum_probs=59.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHhc---CCccEEEEc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAAM---GTMDGIIDT  113 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~---~~~d~vid~  113 (220)
                      -.|+++||.|+ |.+|.++++.+...|++|++++++.++.+.+.++++...   ..|-.+.+.++++.   +++|++|++
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv~n   93 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLINN   93 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEEEC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEEEC
Confidence            46789999997 999999999999999999999999988887777666422   23455566665544   478999999


Q ss_pred             CCC
Q 027668          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        94 Ag~   96 (291)
T 3rd5_A           94 AGI   96 (291)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            985

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.95  E-value=5.2e-05  Score=61.78  Aligned_cols=92  Identities=17%  Similarity=0.217  Sum_probs=72.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -.|++|.|+|.|.+|..+++.++.+|++|++++++..+..++ ...|.. +.      .+.+.....|+|+.+.+....+
T Consensus       255 l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a-~~~g~~-~~------~l~ell~~aDiVi~~~~t~~lI  326 (479)
T 1v8b_A          255 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA-VMEGFN-VV------TLDEIVDKGDFFITCTGNVDVI  326 (479)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH-HTTTCE-EC------CHHHHTTTCSEEEECCSSSSSB
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHH-HHcCCE-ec------CHHHHHhcCCEEEECCChhhhc
Confidence            578999999999999999999999999999999987654344 345653 21      2445566899999998776655


Q ss_pred             H-HHHhccccCCEEEEecCCC
Q 027668          121 M-PLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       121 ~-~~~~~l~~~g~iv~~g~~~  140 (220)
                      . ..+..|++++.++.+|...
T Consensus       327 ~~~~l~~MK~gailiNvgrg~  347 (479)
T 1v8b_A          327 KLEHLLKMKNNAVVGNIGHFD  347 (479)
T ss_dssp             CHHHHTTCCTTCEEEECSSTT
T ss_pred             CHHHHhhcCCCcEEEEeCCCC
Confidence            3 5778899999999998653

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.95  E-value=8.2e-05  Score=55.58  Aligned_cols=76  Identities=18%  Similarity=0.281  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE---EecCCCHHHHHHhc-------CCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.++   .+...   ..|-.+.+.+++..       +++
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   89 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            5688999997 9999999999999999999999998765544333   24321   13444554444332       489


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|.++|..
T Consensus        90 d~vi~~Ag~~   99 (255)
T 1fmc_A           90 DILVNNAGGG   99 (255)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999998753

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.94  E-value=0.00016  Score=55.20  Aligned_cols=76  Identities=17%  Similarity=0.225  Sum_probs=54.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHhc-------CCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++.+++++.+.+.+++   +...   ..|-.+.+.++++.       +++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i  122 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV  122 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999997 99999999999999999999888876655544433   4322   23455555444332       479


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|.++|..
T Consensus       123 d~li~~Ag~~  132 (285)
T 2c07_A          123 DILVNNAGIT  132 (285)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999998853

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=97.94  E-value=6.5e-05  Score=56.84  Aligned_cols=75  Identities=16%  Similarity=0.353  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCccc-HHHHHHHcCC--cE-EecCCCHHHHHHh-------cC--
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGA--DS-FLVSRDQDEMQAA-------MG--  105 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~~~g~--~~-v~~~~~~~~~~~~-------~~--  105 (220)
                      .++++||.|+   |++|.++++.+...|++|++++++.++ .+.+.++++.  .. ..|-.+.+.++++       .+  
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~~   85 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGAG   85 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4688999984   799999999999999999999998765 3555555553  22 2355555444322       24  


Q ss_pred             -CccEEEEcCCC
Q 027668          106 -TMDGIIDTVSA  116 (220)
Q Consensus       106 -~~d~vid~~g~  116 (220)
                       ++|++|+++|.
T Consensus        86 ~~iD~lv~nAg~   97 (269)
T 2h7i_A           86 NKLDGVVHSIGF   97 (269)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCceEEEECCcc
Confidence             79999999874

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.94  E-value=3.9e-05  Score=58.05  Aligned_cols=99  Identities=14%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHH---HcCCcE---EecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~  105 (220)
                      ..++++||.|+ |++|.++++.+...|++|+++.+ +.+..+.+.+   ..+...   ..|-.+.+.++++       .+
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999997 99999999999999999988754 4434443332   334322   2355555444332       24


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCC
Q 027668          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       106 ~~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ++|++|+++|...                         ..+.++..++++|+++.++..
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~  163 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTS  163 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeCh
Confidence            8999999998631                         123455566778999998764

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.94  E-value=7.7e-05  Score=55.62  Aligned_cols=75  Identities=17%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC----CcE-EecCCCHHHHHHhc-------CCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----ADS-FLVSRDQDEMQAAM-------GTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g----~~~-v~~~~~~~~~~~~~-------~~~d  108 (220)
                      +++++||.|+ |.+|..+++.+...|++|+++++++++.+...+++.    ... ..|..+.+.++++.       +++|
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   84 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4688999997 999999999999999999999999877666555443    121 23445554443322       4799


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|.++|.
T Consensus        85 ~li~~Ag~   92 (251)
T 1zk4_A           85 TLVNNAGI   92 (251)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999885

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.94  E-value=0.00016  Score=55.03  Aligned_cols=99  Identities=20%  Similarity=0.260  Sum_probs=66.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-HHHH---HHHcCCcE---EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEA---VERLGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-~~~~---~~~~g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |.+|.++++.+...|++|++++++.++ .+.+   .++.|...   ..|-.+.+.+.+.       .++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  107 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK  107 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5688999997 999999999999999999999988653 2222   13345332   1244444433322       248


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          107 MDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +|++|+++|...                         ..+.++..++.+|+++.+++..
T Consensus       108 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  166 (283)
T 1g0o_A          108 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT  166 (283)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechh
Confidence            999999998531                         1133455556779999998653

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.94  E-value=0.00016  Score=54.67  Aligned_cols=100  Identities=22%  Similarity=0.272  Sum_probs=67.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHH---HHcCCcE---EecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAV---ERLGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~---~~~g~~~---v~~~~~~~~~~~~-------~~  105 (220)
                      -.|+++||.|+ |++|.++++.+...|++|+++++... ..+.+.   +..|...   ..|-.+.+.++++       .+
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   95 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFG   95 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35789999997 89999999999999999998776543 333332   2345322   2344555444332       24


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++|++|+++|...                         ..+.++..++++|+++.++...
T Consensus        96 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           96 HLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             CCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            8999999988631                         1244566677899999998754

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.94  E-value=8e-05  Score=54.26  Aligned_cols=91  Identities=21%  Similarity=0.315  Sum_probs=63.2

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhcCCccEEEEcCCCcc----
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAMGTMDGIIDTVSAVH----  118 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~~g~~~----  118 (220)
                      +|||.|+ |.+|..+++.+...|.+|+++++++++...+.  -+...+. |..+.+.  +...++|+||.++|...    
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~--~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~   77 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH--KDINILQKDIFDLTL--SDLSDQNVVVDAYGISPDEAE   77 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC--SSSEEEECCGGGCCH--HHHTTCSEEEECCCSSTTTTT
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc--CCCeEEeccccChhh--hhhcCCCEEEECCcCCccccc
Confidence            5899997 99999999999999999999999987655442  3444332 2222222  44468999999998742    


Q ss_pred             ----cHHHHHhcccc--CCEEEEecCC
Q 027668          119 ----PLMPLIGLLKS--QGKLVLLGAP  139 (220)
Q Consensus       119 ----~~~~~~~~l~~--~g~iv~~g~~  139 (220)
                          .....++.++.  .++++.++..
T Consensus        78 ~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           78 KHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             SHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             hHHHHHHHHHHHHHhcCCceEEEEecc
Confidence                12345555554  4788888764

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.93  E-value=4.2e-05  Score=57.45  Aligned_cols=76  Identities=21%  Similarity=0.326  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc--E-EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD--S-FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~--~-v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .++++||.|+ |++|.++++.+...|++|+++++++++.++..++++..  . ..|-.+.+.+++.       .+++|++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~l   85 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHGL   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5689999997 99999999999999999999999988777766666532  1 2344554444332       2489999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      |+++|..
T Consensus        86 v~nAg~~   92 (257)
T 3tpc_A           86 VNCAGTA   92 (257)
T ss_dssp             EECCCCC
T ss_pred             EECCCCC
Confidence            9998853

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.93  E-value=0.00012  Score=54.35  Aligned_cols=75  Identities=24%  Similarity=0.373  Sum_probs=57.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-CCcE-EecCCCHHHHHHhcC---CccEEEEcCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-GADS-FLVSRDQDEMQAAMG---TMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-g~~~-v~~~~~~~~~~~~~~---~~d~vid~~g  115 (220)
                      +++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.++. +... ..|..+.+.+++...   ++|++|+++|
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~Ag   85 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAA   85 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECCc
Confidence            5689999997 99999999999999999999999987766665544 3332 235555666655543   6899999998


Q ss_pred             C
Q 027668          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        86 ~   86 (244)
T 1cyd_A           86 L   86 (244)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.93  E-value=0.00015  Score=54.76  Aligned_cols=96  Identities=18%  Similarity=0.124  Sum_probs=71.4

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+...+...|+...---.|++++|+|. +.+|..+++++...|+.|+++.+....                     +
T Consensus       140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~~---------------------L  198 (286)
T 4a5o_A          140 LRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRD---------------------L  198 (286)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCSC---------------------H
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCcC---------------------H
Confidence            456666666777776654458999999997 569999999999999999887654322                     2


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+....+|++|.++|.+..+.  -+.+++|..++.+|...
T Consensus       199 ~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          199 ADHVSRADLVVVAAGKPGLVK--GEWIKEGAIVIDVGINR  236 (286)
T ss_dssp             HHHHHTCSEEEECCCCTTCBC--GGGSCTTCEEEECCSCS
T ss_pred             HHHhccCCEEEECCCCCCCCC--HHHcCCCeEEEEecccc
Confidence            223346899999999886443  25579999999988754

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.93  E-value=0.00011  Score=55.29  Aligned_cols=94  Identities=12%  Similarity=0.090  Sum_probs=70.2

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcCc-hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+.......++...  -.|++++|+|.| .+|..+++++...|+.|+++.+....++                    
T Consensus       131 ~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t~~L~--------------------  188 (276)
T 3ngx_A          131 LVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKTKDIG--------------------  188 (276)
T ss_dssp             SCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSCHH--------------------
T ss_pred             CCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCcccHH--------------------
Confidence            45666667777777766  689999999985 6999999999999999998865432222                    


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                       +....+|++|.++|.+..+..  +.+++|..++.+|...
T Consensus       189 -~~~~~ADIVI~Avg~p~~I~~--~~vk~GavVIDvgi~~  225 (276)
T 3ngx_A          189 -SMTRSSKIVVVAVGRPGFLNR--EMVTPGSVVIDVGINY  225 (276)
T ss_dssp             -HHHHHSSEEEECSSCTTCBCG--GGCCTTCEEEECCCEE
T ss_pred             -HhhccCCEEEECCCCCccccH--hhccCCcEEEEeccCc
Confidence             222357999999998764433  4578898888888753

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.93  E-value=0.00011  Score=55.64  Aligned_cols=96  Identities=21%  Similarity=0.253  Sum_probs=71.2

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcCc-hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+...+...++....--.|++++|+|.| .+|..+++++...|+.|+++.+....                     +
T Consensus       139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t~~---------------------L  197 (285)
T 3p2o_A          139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKD---------------------L  197 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSC---------------------H
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCchh---------------------H
Confidence            3666666666777766544689999999975 58999999999999999887654322                     2


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+....+|++|.++|.+..+.  -+.+++|..++.+|...
T Consensus       198 ~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDVgi~~  235 (285)
T 3p2o_A          198 SLYTRQADLIIVAAGCVNLLR--SDMVKEGVIVVDVGINR  235 (285)
T ss_dssp             HHHHTTCSEEEECSSCTTCBC--GGGSCTTEEEEECCCEE
T ss_pred             HHHhhcCCEEEECCCCCCcCC--HHHcCCCeEEEEeccCc
Confidence            233457899999999876443  35578888888888653

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.92  E-value=0.00011  Score=50.66  Aligned_cols=95  Identities=24%  Similarity=0.158  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc-ccHHHHHHHc--CCcEEe-cCCCHHHHHHh-cCCccEEEEcCCC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVERL--GADSFL-VSRDQDEMQAA-MGTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~-~~~~~~~~~~--g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~  116 (220)
                      +.++++|+|+|.+|..+++.+...|.+|+++++++ ++.+.+.+.+  |...+. +..+.+.+.+. ..++|.|+-+++.
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence            34678999999999999999999999999999974 4444443333  454443 34455655554 4589999999988


Q ss_pred             cccHHH---HHhccccCCEEEEe
Q 027668          117 VHPLMP---LIGLLKSQGKLVLL  136 (220)
Q Consensus       117 ~~~~~~---~~~~l~~~g~iv~~  136 (220)
                      ...-..   ..+.+.+..+++..
T Consensus        82 d~~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           82 DADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             hHHHHHHHHHHHHHCCCCEEEEE
Confidence            642222   23333344566553

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.92  E-value=0.00023  Score=55.92  Aligned_cols=75  Identities=24%  Similarity=0.420  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-------HHHH---HHHcCCcE---EecCCCHHHHHHh----
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-------KSEA---VERLGADS---FLVSRDQDEMQAA----  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-------~~~~---~~~~g~~~---v~~~~~~~~~~~~----  103 (220)
                      .|+++||.|+ |++|.++++.+...|++|++++++.++       .+.+   .+..|...   ..|-.+.+.++++    
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~  123 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKA  123 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence            5789999997 999999999999999999999998764       2222   23445322   2355555544332    


Q ss_pred             ---cCCccEEEEcCCC
Q 027668          104 ---MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ---~~~~d~vid~~g~  116 (220)
                         .+++|++|+++|.
T Consensus       124 ~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          124 IKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCC
Confidence               2489999999985

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.92  E-value=8.1e-05  Score=56.04  Aligned_cols=75  Identities=16%  Similarity=0.277  Sum_probs=55.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCcE---EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++    +...   ..|-.+.+.+++.       .++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG   85 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999997 99999999999999999999999987665554433    4322   1345555444332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        86 id~lv~~Ag~   95 (263)
T 3ai3_A           86 ADILVNNAGT   95 (263)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=97.92  E-value=3.6e-05  Score=56.10  Aligned_cols=98  Identities=31%  Similarity=0.328  Sum_probs=68.4

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      .+.++++||.+|+| .|..+..+++..|  .+++.++.+++..+.+.+.   .|..  .+...+-.+.. ...+.||+|+
T Consensus        74 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~  151 (215)
T 2yxe_A           74 DLKPGMKVLEIGTG-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGY-EPLAPYDRIY  151 (215)
T ss_dssp             TCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCC-GGGCCEEEEE
T ss_pred             CCCCCCEEEEECCC-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CCCCCeeEEE
Confidence            46899999999998 4888889998876  6999999998876665433   2322  12222111111 1124799999


Q ss_pred             EcCCCcccHHHHHhccccCCEEEEecC
Q 027668          112 DTVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       112 d~~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      .+.+.....+.+.+.|+++|+++..-.
T Consensus       152 ~~~~~~~~~~~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          152 TTAAGPKIPEPLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             ESSBBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             ECCchHHHHHHHHHHcCCCcEEEEEEC
Confidence            887766566788899999999987643

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=97.91  E-value=8.6e-05  Score=55.66  Aligned_cols=74  Identities=18%  Similarity=0.281  Sum_probs=54.1

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccE
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~  109 (220)
                      |+++||.|+ |++|.++++.+...  |+.|+.+++++++.+++.++++....   .|-.+.+.++++       .+++|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            578999997 99999999877666  46899999998888777777664322   244555444332       248999


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|+++|.
T Consensus        82 lvnnAg~   88 (254)
T 3kzv_A           82 LVANAGV   88 (254)
T ss_dssp             EEEECCC
T ss_pred             EEECCcc
Confidence            9999886

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.91  E-value=6.8e-05  Score=61.03  Aligned_cols=94  Identities=15%  Similarity=0.167  Sum_probs=64.8

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-cE-EecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DS-FLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~~-v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      +.+|+|+|+|.+|..+++.+...|.+|++++++.++.+.+.+.++. .. ..+..+.+.+.+...++|+||+|++.....
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~   82 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA   82 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch
Confidence            5789999999999999998888999999999988776665444542 21 224455556666667899999999874222


Q ss_pred             HHHHhccccCCEEEEe
Q 027668          121 MPLIGLLKSQGKLVLL  136 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~  136 (220)
                      .....+++++..++..
T Consensus        83 ~i~~a~l~~g~~vvd~   98 (450)
T 1ff9_A           83 TVIKSAIRQKKHVVTT   98 (450)
T ss_dssp             HHHHHHHHHTCEEEES
T ss_pred             HHHHHHHhCCCeEEEe
Confidence            2334455666565544

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.91  E-value=1.3e-05  Score=61.18  Aligned_cols=83  Identities=17%  Similarity=0.197  Sum_probs=58.1

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCC-----cE-EecCCCHHHHHHh
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA-----DS-FLVSRDQDEMQAA  103 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~-----~~-v~~~~~~~~~~~~  103 (220)
                      ..+++....--.+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.++++++.     .. .++..+   +.+.
T Consensus       115 ~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~---l~~~  191 (283)
T 3jyo_A          115 GRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARG---IEDV  191 (283)
T ss_dssp             HHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTT---HHHH
T ss_pred             HHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHH---HHHH
Confidence            3445443322467899999999999999999999999 799999998887777665542     21 222222   2223


Q ss_pred             cCCccEEEEcCCC
Q 027668          104 MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ~~~~d~vid~~g~  116 (220)
                      ..++|+||+|++.
T Consensus       192 l~~~DiVInaTp~  204 (283)
T 3jyo_A          192 IAAADGVVNATPM  204 (283)
T ss_dssp             HHHSSEEEECSST
T ss_pred             HhcCCEEEECCCC
Confidence            3468999999864

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.91  E-value=5.4e-05  Score=56.94  Aligned_cols=75  Identities=16%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEE-eCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~-~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|.++++.+...|++|+++ .++.++.+.+.+++   |...   ..|-.+.+.++++       .++
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR   82 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5788999997 999999999999999999887 77776655554433   4322   1344555444332       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        83 id~lv~nAg~   92 (258)
T 3oid_A           83 LDVFVNNAAS   92 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999975

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.91  E-value=8.1e-05  Score=56.06  Aligned_cols=75  Identities=19%  Similarity=0.216  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC--CcE-EecCCCHHHHHHhc-------CCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG--ADS-FLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g--~~~-v~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++.  ... ..|-.+.+.+++..       +++|++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~l   90 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDLL   90 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            4689999997 999999999999999999999999877766655553  222 23555554443322       489999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        91 v~~Ag~   96 (263)
T 3ak4_A           91 CANAGV   96 (263)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999985

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.90  E-value=7e-05  Score=57.08  Aligned_cols=95  Identities=21%  Similarity=0.194  Sum_probs=67.9

Q ss_pred             EEEEEcC-chHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~~~--  119 (220)
                      +|||.|+ |.+|..+++.+... |.+|+++++++++...+ ...+...+ .|..+.+.+.+...++|+||.+++....  
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~~   80 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHPSF   80 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCSHH
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCccch
Confidence            4899997 99999999998887 89999999998765433 23344433 3666777888888899999999986421  


Q ss_pred             -----HHHHHhccccC--CEEEEecCCC
Q 027668          120 -----LMPLIGLLKSQ--GKLVLLGAPE  140 (220)
Q Consensus       120 -----~~~~~~~l~~~--g~iv~~g~~~  140 (220)
                           ....++.++..  ++++.++...
T Consensus        81 ~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           81 KRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             hhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence                 22344444433  5788877654

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.90  E-value=5.6e-05  Score=56.99  Aligned_cols=98  Identities=16%  Similarity=0.217  Sum_probs=65.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc---cHHHHHHHc---CCcE---EecCCCHHHHHHh-------c
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERL---GADS---FLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~---~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~  104 (220)
                      .++++||.|+ |++|.++++.+...|++|+++++...   +.+++.+++   |...   ..|-.+.+.++++       .
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   89 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF   89 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5789999997 99999999999999999999876533   333333333   4322   2345555444332       2


Q ss_pred             CCccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCC
Q 027668          105 GTMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       105 ~~~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      +++|++|+++|...                         ..+.++..++++|+++.++..
T Consensus        90 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~  149 (262)
T 3ksu_A           90 GKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATS  149 (262)
T ss_dssp             CSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEech
Confidence            48999999998531                         123345566678999998764

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.90  E-value=5.9e-05  Score=55.44  Aligned_cols=99  Identities=23%  Similarity=0.187  Sum_probs=68.9

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCC------CeEEEEeCCcccHHHHHHH---cC-------CcEEecCCCHHHHH-
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG------VKVTVISTSPSKKSEAVER---LG-------ADSFLVSRDQDEMQ-  101 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g------~~v~~~~~~~~~~~~~~~~---~g-------~~~v~~~~~~~~~~-  101 (220)
                      .++++++||-+|+|. |..+..+++..+      .+|+.++.+++..+.+.+.   .+       .-.++..+-.+... 
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  155 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEE  155 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHH
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccc
Confidence            468899999999986 888888998876      5999999998866655433   22       11222222111110 


Q ss_pred             --HhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecC
Q 027668          102 --AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       102 --~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                        ...+.||+|+........+..+.+.|+++|+++..-.
T Consensus       156 ~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          156 EKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEE
T ss_pred             cCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEc
Confidence              1124799999877766677889999999999987643

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.90  E-value=0.00014  Score=55.41  Aligned_cols=97  Identities=19%  Similarity=0.222  Sum_probs=71.5

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcCc-hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+...+...++...---.|++++|+|.| .+|..+++++...|+.|+++.+.....+                   +
T Consensus       144 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~-------------------l  204 (300)
T 4a26_A          144 FTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED-------------------M  204 (300)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH-------------------H
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch-------------------h
Confidence            4666666777777776544689999999975 5899999999999999988876432111                   1


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      .+....+|+||.++|.+..+..  +.++++..++.+|..
T Consensus       205 ~~~~~~ADIVI~Avg~p~~I~~--~~vk~GavVIDvgi~  241 (300)
T 4a26_A          205 IDYLRTADIVIAAMGQPGYVKG--EWIKEGAAVVDVGTT  241 (300)
T ss_dssp             HHHHHTCSEEEECSCCTTCBCG--GGSCTTCEEEECCCE
T ss_pred             hhhhccCCEEEECCCCCCCCcH--HhcCCCcEEEEEecc
Confidence            1333478999999998864433  457899999888864

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=97.90  E-value=4.8e-05  Score=55.18  Aligned_cols=97  Identities=23%  Similarity=0.151  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEEEc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      .++++++||-+|+|. |..+..+++. +.+|+.++.+++..+.+.+.   .|..  .++..+-.+.. ...+.||+|+..
T Consensus        74 ~~~~~~~vLdiG~G~-G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~  150 (210)
T 3lbf_A           74 ELTPQSRVLEIGTGS-GYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-QARAPFDAIIVT  150 (210)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEES
T ss_pred             CCCCCCEEEEEcCCC-CHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-ccCCCccEEEEc
Confidence            368999999999984 8888888887 78999999998876666443   2432  22222111111 112479999987


Q ss_pred             CCCcccHHHHHhccccCCEEEEecC
Q 027668          114 VSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 ~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      .........+.+.|+++|+++..-.
T Consensus       151 ~~~~~~~~~~~~~L~pgG~lv~~~~  175 (210)
T 3lbf_A          151 AAPPEIPTALMTQLDEGGILVLPVG  175 (210)
T ss_dssp             SBCSSCCTHHHHTEEEEEEEEEEEC
T ss_pred             cchhhhhHHHHHhcccCcEEEEEEc
Confidence            7666556678899999999987643

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.90  E-value=2.5e-05  Score=58.53  Aligned_cols=76  Identities=28%  Similarity=0.416  Sum_probs=53.0

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCc-------------------ccHHHHHHHcC----CcEE--ecC-C
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP-------------------SKKSEAVERLG----ADSF--LVS-R   95 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~-------------------~~~~~~~~~~g----~~~v--~~~-~   95 (220)
                      +.+|+|+|+|++|..+++.+...|. ++++++.+.                   .+.+.+.+.+.    ...+  +.. -
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~  110 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALL  110 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            4789999999999999999999998 888888886                   45544433332    1112  221 1


Q ss_pred             CHHHHHHhcCCccEEEEcCCCcc
Q 027668           96 DQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        96 ~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      +.+...++..++|+||+|+++..
T Consensus       111 ~~~~~~~~~~~~DvVi~~~d~~~  133 (249)
T 1jw9_B          111 DDAELAALIAEHDLVLDCTDNVA  133 (249)
T ss_dssp             CHHHHHHHHHTSSEEEECCSSHH
T ss_pred             CHhHHHHHHhCCCEEEEeCCCHH
Confidence            23344445568999999998765

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.89  E-value=0.00011  Score=55.62  Aligned_cols=75  Identities=19%  Similarity=0.261  Sum_probs=55.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------c-CC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------M-GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~-~~  106 (220)
                      .++++||.|+ |.+|.++++.+...|++|+++++++++.+.+.+++   +...   ..|-.+.+.++++       . ++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   99 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   99 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 99999999999999999999999987665544332   4321   2344555444332       2 68


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       100 id~lv~nAg~  109 (273)
T 1ae1_A          100 LNILVNNAGV  109 (273)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            9999999985

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.89  E-value=0.00014  Score=55.47  Aligned_cols=96  Identities=14%  Similarity=0.105  Sum_probs=71.1

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcCc-hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+.......+++..---.|.+++|+|.| .+|.-+++++...|+.|++..+....                     +
T Consensus       144 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~---------------------L  202 (301)
T 1a4i_A          144 FIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH---------------------L  202 (301)
T ss_dssp             CCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS---------------------H
T ss_pred             ccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCccc---------------------H
Confidence            4566666666666665533588999999997 68999999999999999887644221                     3


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+....+|+||.++|.+..+.  -+.+++|..++.+|...
T Consensus       203 ~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDVgi~~  240 (301)
T 1a4i_A          203 DEEVNKGDILVVATGQPEMVK--GEWIKPGAIVIDCGINY  240 (301)
T ss_dssp             HHHHTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCBC
T ss_pred             HHHhccCCEEEECCCCcccCC--HHHcCCCcEEEEccCCC
Confidence            334457899999999986433  23478999999998753

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.89  E-value=0.00012  Score=55.11  Aligned_cols=75  Identities=17%  Similarity=0.241  Sum_probs=55.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------c-CC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------M-GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~-~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++   |...   ..|-.+.+.+++.       . ++
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   87 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   87 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 99999999999999999999999987665544433   4321   2345555444332       2 57


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        88 id~lv~~Ag~   97 (260)
T 2ae2_A           88 LNILVNNAGI   97 (260)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999984

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=97.88  E-value=7.9e-05  Score=53.81  Aligned_cols=98  Identities=14%  Similarity=0.143  Sum_probs=66.4

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .++++++||-+|+|. |..++.+++..+ .+++.++.+++..+.+.+.   .|.+  .++..+-.+... ..+.||+|+.
T Consensus        37 ~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~D~i~~  114 (204)
T 3e05_A           37 RLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-DLPDPDRVFI  114 (204)
T ss_dssp             TCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-TSCCCSEEEE
T ss_pred             CCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-cCCCCCEEEE
Confidence            368999999999985 888888888863 5999999998876666433   3432  222222111111 1147999997


Q ss_pred             cCCCc---ccHHHHHhccccCCEEEEecC
Q 027668          113 TVSAV---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~g~~---~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      .....   ..+..+.+.|+++|+++....
T Consensus       115 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          115 GGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             SCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence            76532   246678889999999998643

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.88  E-value=6e-05  Score=56.41  Aligned_cols=94  Identities=20%  Similarity=0.234  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHh-------cCCccEEEE
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .-++++||.|+ |.+|.++++.+...|++|++++++.++...      ....++..+.+.++++       .+++|++|+
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~------~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li~   93 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD------HSFTIKDSGEEEIKSVIEKINSKSIKVDTFVC   93 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS------EEEECSCSSHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------cceEEEeCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            34678999997 999999999999999999999998765321      1122334444433322       237999999


Q ss_pred             cCCCc-------c-------------------cHHHHHhccccCCEEEEecCCC
Q 027668          113 TVSAV-------H-------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       113 ~~g~~-------~-------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++|..       .                   ..+.+...++++|+++.++...
T Consensus        94 ~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  147 (251)
T 3orf_A           94 AAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASA  147 (251)
T ss_dssp             CCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechh
Confidence            99841       1                   1233455666788999987653

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.88  E-value=0.00013  Score=55.30  Aligned_cols=75  Identities=15%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCcc---cHHHHHHHcC-CcE-EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLG-ADS-FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~~---~~~~~~~~~g-~~~-v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+   |++|..+++.+...|++|++++++++   ..+++.++.+ ... ..|-.+.+.++++       .++
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   84 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS   84 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999985   69999999999999999999998875   3333433344 222 2355555444332       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        85 id~lv~nAg~   94 (275)
T 2pd4_A           85 LDFIVHSVAF   94 (275)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCcc
Confidence            9999999885

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.88  E-value=1.1e-05  Score=61.10  Aligned_cols=95  Identities=20%  Similarity=0.218  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      .++.+||.+|+|. |..+..+++.. |.+++.++.+++..+.+.+......+...+. .......+.||+|+.... ...
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~-~~~~~~~~~fD~v~~~~~-~~~  160 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYA-PCK  160 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESC-CCC
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcch-hhCCCCCCceeEEEEeCC-hhh
Confidence            6789999999988 99899999986 7799999999988777754443222222211 111101137999995444 446


Q ss_pred             HHHHHhccccCCEEEEecC
Q 027668          120 LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g~  138 (220)
                      +..+.+.|+++|+++....
T Consensus       161 l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          161 AEELARVVKPGGWVITATP  179 (269)
T ss_dssp             HHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHhcCCCcEEEEEEc
Confidence            8899999999999987753

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.88  E-value=8.9e-05  Score=56.49  Aligned_cols=75  Identities=24%  Similarity=0.311  Sum_probs=57.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .|+++||.|+ |++|.++++.+...|++|++++++.++.+++.++++....   .|-.+.+.++++       .+++|++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l   83 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDTL   83 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            4689999997 9999999999999999999999999888877777764322   244454433322       2489999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus        84 vnnAg~   89 (281)
T 3zv4_A           84 IPNAGI   89 (281)
T ss_dssp             ECCCCC
T ss_pred             EECCCc
Confidence            999985

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=5.6e-05  Score=55.44  Aligned_cols=95  Identities=17%  Similarity=0.212  Sum_probs=65.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .+|||.|+ |.+|..+++.+...|.+|+++++++++...+.  -+...+ .|..+.+.+.+...++|+||.++|...   
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~~   82 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--EHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWNNP   82 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC--TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC-----
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc--CceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCCCCh
Confidence            57999997 99999999999999999999999977543221  122222 244566777777779999999998641   


Q ss_pred             --------cHHHHHhccccC--CEEEEecCCC
Q 027668          119 --------PLMPLIGLLKSQ--GKLVLLGAPE  140 (220)
Q Consensus       119 --------~~~~~~~~l~~~--g~iv~~g~~~  140 (220)
                              .....++.+++.  ++++.++...
T Consensus        83 ~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           83 DIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             -CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence                    122344444433  4888887643

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.87  E-value=8.7e-05  Score=54.85  Aligned_cols=75  Identities=15%  Similarity=0.229  Sum_probs=56.3

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCcEE---ecCCCHHHHHHhc-------CCc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADSF---LVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~~v---~~~~~~~~~~~~~-------~~~  107 (220)
                      ++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+++    +....   .|-.+.+.++++.       +++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDV   81 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence            578999997 99999999999999999999999988766654433    43322   3555666555443       379


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|+++|..
T Consensus        82 d~li~~Ag~~   91 (235)
T 3l77_A           82 DVVVANAGLG   91 (235)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCccc
Confidence            9999999863

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.87  E-value=0.00016  Score=54.79  Aligned_cols=75  Identities=24%  Similarity=0.329  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-------HHHHHH---HcCCc---EEecCCCHHHHHHh----
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-------KSEAVE---RLGAD---SFLVSRDQDEMQAA----  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-------~~~~~~---~~g~~---~v~~~~~~~~~~~~----  103 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.++       .+...+   ..+..   ...|-.+.+.++++    
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   84 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAAT   84 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            5789999997 999999999999999999999998653       223222   23432   12355555444332    


Q ss_pred             ---cCCccEEEEcCCC
Q 027668          104 ---MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ---~~~~d~vid~~g~  116 (220)
                         .+++|++|+++|.
T Consensus        85 ~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           85 VDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHcCCCCEEEECCCc
Confidence               2489999999985

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.87  E-value=0.00011  Score=55.32  Aligned_cols=76  Identities=20%  Similarity=0.299  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcC-c-hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---C-Cc---EEecCCCHHHHHHh-------c
Q 027668           41 KPGMHVGVVGL-G-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G-AD---SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g-~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g-~~---~v~~~~~~~~~~~~-------~  104 (220)
                      -.++++||.|+ | ++|..+++.+...|++|++++++.++.+++.+++   + ..   ...|-.+.+.++++       .
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            35789999997 7 7999999999999999999999988766665544   2 11   12344555444332       2


Q ss_pred             CCccEEEEcCCC
Q 027668          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~vid~~g~  116 (220)
                      +++|++|+++|.
T Consensus       100 g~id~li~~Ag~  111 (266)
T 3o38_A          100 GRLDVLVNNAGL  111 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCc
Confidence            489999999985

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.87  E-value=0.00013  Score=54.72  Aligned_cols=73  Identities=18%  Similarity=0.284  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCcEE---ecCCCHHHHHHhc-------CCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADSF---LVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~~v---~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++++  +...+   ..+....   .|-.+.+.+.+..       +++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGV   80 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999997 99999999999999999999988765  22222   2343222   2444554443332       489


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        81 d~lv~~Ag~   89 (255)
T 2q2v_A           81 DILVNNAGI   89 (255)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999885

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.87  E-value=0.00016  Score=55.04  Aligned_cols=75  Identities=11%  Similarity=0.221  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHHHc----CCcEE---ecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERL----GADSF---LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~~~----g~~~v---~~~~~~~~~~~~-------~~  105 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++ ..++.+.+.+++    +....   .|-.+.+.++++       .+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  103 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFG  103 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence            4689999997 99999999999999999999998 444444443332    32221   244444444332       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus       104 ~iD~lv~nAg~  114 (281)
T 3v2h_A          104 GADILVNNAGV  114 (281)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999986

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.87  E-value=0.00012  Score=55.91  Aligned_cols=76  Identities=21%  Similarity=0.269  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC----------------cccHHHHHHH---cCCcE---EecCCCH
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS----------------PSKKSEAVER---LGADS---FLVSRDQ   97 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~----------------~~~~~~~~~~---~g~~~---v~~~~~~   97 (220)
                      -.|+++||.|+ |++|.++++.+...|++|++++++                .++.+++.+.   .+...   ..|-.+.
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~   88 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDY   88 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCCH
Confidence            35789999997 899999999999999999999876                3444443332   23322   2355555


Q ss_pred             HHHHHh-------cCCccEEEEcCCC
Q 027668           98 DEMQAA-------MGTMDGIIDTVSA  116 (220)
Q Consensus        98 ~~~~~~-------~~~~d~vid~~g~  116 (220)
                      +.++++       .+++|++|+++|.
T Consensus        89 ~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           89 DALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            444332       2489999999985

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.86  E-value=0.0003  Score=53.64  Aligned_cols=76  Identities=28%  Similarity=0.347  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-------HHHHH---HHcCCcE---EecCCCHHHHHHh----
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-------KSEAV---ERLGADS---FLVSRDQDEMQAA----  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-------~~~~~---~~~g~~~---v~~~~~~~~~~~~----  103 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.++       .++..   +..+...   ..|-.+.+.++++    
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   87 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKT   87 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            5789999997 999999999999999999999998762       22222   2334322   2255555444332    


Q ss_pred             ---cCCccEEEEcCCCc
Q 027668          104 ---MGTMDGIIDTVSAV  117 (220)
Q Consensus       104 ---~~~~d~vid~~g~~  117 (220)
                         .+++|++|+++|..
T Consensus        88 ~~~~g~id~lvnnAg~~  104 (285)
T 3sc4_A           88 VEQFGGIDICVNNASAI  104 (285)
T ss_dssp             HHHHSCCSEEEECCCCC
T ss_pred             HHHcCCCCEEEECCCCC
Confidence               24899999999863

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.86  E-value=0.00011  Score=55.71  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=54.6

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC----cE-EecCCCHHHHHHhc-------CCccEE
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----DS-FLVSRDQDEMQAAM-------GTMDGI  110 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~----~~-v~~~~~~~~~~~~~-------~~~d~v  110 (220)
                      +++||.|+ |++|.++++.+...|++|+++++++++.+.+.+++..    .. ..|-.+.+.+++..       +++|++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  101 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL  101 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            78999997 9999999999999999999999998877766555432    11 23555555554432       368999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      |+++|.
T Consensus       102 vnnAG~  107 (272)
T 2nwq_A          102 INNAGL  107 (272)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999875

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.86  E-value=9.5e-05  Score=56.15  Aligned_cols=77  Identities=22%  Similarity=0.317  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-------------CcccHHHHHH---HcCCcE---EecCCCHHHH
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-------------SPSKKSEAVE---RLGADS---FLVSRDQDEM  100 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-------------~~~~~~~~~~---~~g~~~---v~~~~~~~~~  100 (220)
                      -.|+++||.|+ |++|.++++.+...|++|+++++             +.++.++..+   ..+...   ..|-.+.+.+
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   88 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRL   88 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            35789999997 99999999999999999999987             3444443333   233322   2355555444


Q ss_pred             HHh-------cCCccEEEEcCCCc
Q 027668          101 QAA-------MGTMDGIIDTVSAV  117 (220)
Q Consensus       101 ~~~-------~~~~d~vid~~g~~  117 (220)
                      +++       .+++|++|+++|..
T Consensus        89 ~~~~~~~~~~~g~id~lvnnAg~~  112 (277)
T 3tsc_A           89 RKVVDDGVAALGRLDIIVANAGVA  112 (277)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCC
Confidence            332       24799999999863

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.86  E-value=0.00011  Score=55.37  Aligned_cols=75  Identities=13%  Similarity=0.232  Sum_probs=51.7

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCc---ccHHHHHHHcCCcE--EecCCCHHHHHHhc-------CC
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSP---SKKSEAVERLGADS--FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~---~~~~~~~~~~g~~~--v~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+   |.+|.++++.+...|++|+++++++   +..+++.+..+...  ..|-.+.+.++++.       ++
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4688999985   6999999999999999999999876   22333333334222  23555555443322       37


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        88 iD~lv~~Ag~   97 (265)
T 1qsg_A           88 FDGFVHSIGF   97 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999885

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.86  E-value=8.7e-05  Score=57.32  Aligned_cols=89  Identities=20%  Similarity=0.375  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--  118 (220)
                      -.|.+|.|+|.|.+|..+++.++..|++|++.+++.++ +.+ .++|+...    +   ..++....|+|+.++....  
T Consensus       140 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~~----~---l~ell~~aDvV~l~~p~~~~t  210 (307)
T 1wwk_A          140 LEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERA-KEVNGKFV----D---LETLLKESDVVTIHVPLVEST  210 (307)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-HHTTCEEC----C---HHHHHHHCSEEEECCCCSTTT
T ss_pred             cCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhH-hhcCcccc----C---HHHHHhhCCEEEEecCCChHH
Confidence            35789999999999999999999999999999988765 333 56776532    2   2233346899999887532  


Q ss_pred             --cH-HHHHhccccCCEEEEecC
Q 027668          119 --PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 --~~-~~~~~~l~~~g~iv~~g~  138 (220)
                        .+ ...+..+++++.++.++.
T Consensus       211 ~~li~~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          211 YHLINEERLKLMKKTAILINTSR  233 (307)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSC
T ss_pred             hhhcCHHHHhcCCCCeEEEECCC
Confidence              22 346778999999998876

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.86  E-value=7.8e-05  Score=56.79  Aligned_cols=81  Identities=20%  Similarity=0.132  Sum_probs=59.1

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCC---cEEecCCCHHHHHHhcCC
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA---DSFLVSRDQDEMQAAMGT  106 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~  106 (220)
                      ..+|+....--.+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+.++++.   ..+....      +...+
T Consensus       114 ~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~------~l~~~  187 (281)
T 3o8q_A          114 VQDLLAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE------QLKQS  187 (281)
T ss_dssp             HHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG------GCCSC
T ss_pred             HHHHHHhCCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH------HhcCC
Confidence            3445444322468899999999999999999999997 999999999888777777653   1222221      12258


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|+||+|++..
T Consensus       188 aDiIInaTp~g  198 (281)
T 3o8q_A          188 YDVIINSTSAS  198 (281)
T ss_dssp             EEEEEECSCCC
T ss_pred             CCEEEEcCcCC
Confidence            99999999765

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.86  E-value=0.00011  Score=55.26  Aligned_cols=75  Identities=13%  Similarity=0.150  Sum_probs=53.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC------------CcE-EecCCCHHHHHHhc---
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG------------ADS-FLVSRDQDEMQAAM---  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g------------~~~-v~~~~~~~~~~~~~---  104 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+++.            ... ..|-.+.+.+++..   
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~   85 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQV   85 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHHH
Confidence            4688999997 999999999999999999999999877666544432            111 12444544443322   


Q ss_pred             ----CCc-cEEEEcCCC
Q 027668          105 ----GTM-DGIIDTVSA  116 (220)
Q Consensus       105 ----~~~-d~vid~~g~  116 (220)
                          +++ |++|.++|.
T Consensus        86 ~~~~g~i~d~vi~~Ag~  102 (264)
T 2pd6_A           86 QACFSRPPSVVVSCAGI  102 (264)
T ss_dssp             HHHHSSCCSEEEECCCC
T ss_pred             HHHhCCCCeEEEECCCc
Confidence                355 999999885

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.85  E-value=8.6e-05  Score=55.82  Aligned_cols=75  Identities=19%  Similarity=0.218  Sum_probs=54.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-----C--CcE-EecCCCHHHHHHhcC------C
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----G--ADS-FLVSRDQDEMQAAMG------T  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-----g--~~~-v~~~~~~~~~~~~~~------~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++     +  ... ..|-.+.+.+++...      +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4688999997 99999999999999999999999987666554443     2  121 235555554443321      4


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        86 id~lv~~Ag~   95 (260)
T 2z1n_A           86 ADILVYSTGG   95 (260)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.85  E-value=8.5e-05  Score=56.08  Aligned_cols=87  Identities=26%  Similarity=0.290  Sum_probs=63.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc----
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH----  118 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~----  118 (220)
                      +++++|+|+|++|.+++..+...|.+|+++.|+.++.+.+. ++|... ....+.       ..+|+||+|++...    
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~~~-~~~~~l-------~~~DiVInaTp~Gm~~~~  188 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGCDC-FMEPPK-------SAFDLIINATSASLHNEL  188 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTCEE-ESSCCS-------SCCSEEEECCTTCCCCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeE-ecHHHh-------ccCCEEEEcccCCCCCCC
Confidence            88999999999999999999999999999999999988887 788543 233221       17999999986531    


Q ss_pred             cHH-H-HHhccccCCEEEEecC
Q 027668          119 PLM-P-LIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 ~~~-~-~~~~l~~~g~iv~~g~  138 (220)
                      .+. . ....++++..++.+..
T Consensus       189 ~l~~~~l~~~l~~~~~v~D~vY  210 (269)
T 3phh_A          189 PLNKEVLKGYFKEGKLAYDLAY  210 (269)
T ss_dssp             SSCHHHHHHHHHHCSEEEESCC
T ss_pred             CCChHHHHhhCCCCCEEEEeCC
Confidence            121 1 2225677777766544

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.85  E-value=0.00013  Score=54.35  Aligned_cols=75  Identities=23%  Similarity=0.341  Sum_probs=55.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.++.+.+.+++   |...   ..|-.+.+.+++.       .+++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   85 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL   85 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999997 99999999999999999999999987766554443   4321   2344555444332       2489


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        86 d~lv~nAg~   94 (247)
T 2jah_A           86 DILVNNAGI   94 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999885

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.85  E-value=0.00011  Score=55.74  Aligned_cols=77  Identities=19%  Similarity=0.321  Sum_probs=53.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC------------cccHHHHHH---HcCCcE---EecCCCHHHHH
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS------------PSKKSEAVE---RLGADS---FLVSRDQDEMQ  101 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~------------~~~~~~~~~---~~g~~~---v~~~~~~~~~~  101 (220)
                      -.|+++||.|+ |.+|.++++.+...|++|++++++            .++.+...+   ..+...   ..|-.+.+.++
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   90 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLS   90 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            35789999997 999999999999999999999886            333333322   334322   23445554443


Q ss_pred             Hh-------cCCccEEEEcCCCc
Q 027668          102 AA-------MGTMDGIIDTVSAV  117 (220)
Q Consensus       102 ~~-------~~~~d~vid~~g~~  117 (220)
                      ++       .+++|++|+++|..
T Consensus        91 ~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           91 AALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             HHHHHHHHHHCCCCEEEECCCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCC
Confidence            32       24899999999864

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.85  E-value=0.00012  Score=55.92  Aligned_cols=75  Identities=13%  Similarity=0.171  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCC---eEEEEeCCcccHHHHHHHc-----CCcE---EecCCCHHHHHHhc-----
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGV---KVTVISTSPSKKSEAVERL-----GADS---FLVSRDQDEMQAAM-----  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~---~v~~~~~~~~~~~~~~~~~-----g~~~---v~~~~~~~~~~~~~-----  104 (220)
                      .++++||.|+ |++|.++++.+...|+   +|++++++.++.+++.+++     +...   ..|-.+.+.++++.     
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            4689999997 9999999988877776   9999999988777665543     3221   23445554444332     


Q ss_pred             --CCccEEEEcCCC
Q 027668          105 --GTMDGIIDTVSA  116 (220)
Q Consensus       105 --~~~d~vid~~g~  116 (220)
                        +++|++|+++|.
T Consensus       112 ~~g~iD~lVnnAG~  125 (287)
T 3rku_A          112 EFKDIDILVNNAGK  125 (287)
T ss_dssp             GGCSCCEEEECCCC
T ss_pred             hcCCCCEEEECCCc
Confidence              379999999984

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.85  E-value=0.00019  Score=53.20  Aligned_cols=74  Identities=15%  Similarity=0.215  Sum_probs=52.0

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEE-eCCcccHHHHHHH---cCCc--E--EecCCCHHHHHHh-------cCC
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVER---LGAD--S--FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~-~~~~~~~~~~~~~---~g~~--~--v~~~~~~~~~~~~-------~~~  106 (220)
                      ++++||.|+ |.+|..+++.+...|++|+++ +++.++.+.+.++   .+..  .  ..|-.+.+.+++.       .++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            357899997 999999999999999999998 7776665544333   2322  2  2355555444333       358


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        81 ~d~li~~Ag~   90 (245)
T 2ph3_A           81 LDTLVNNAGI   90 (245)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999885

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.85  E-value=0.00012  Score=55.47  Aligned_cols=75  Identities=19%  Similarity=0.287  Sum_probs=56.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE--EecCCCHHHHHHh-------cCCccEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS--FLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~-------~~~~d~vi  111 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++....  ..|-.+.+.++++       .+++|++|
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   87 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   87 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5789999997 999999999999999999999999887766655554222  2344555444332       24899999


Q ss_pred             EcCCC
Q 027668          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        88 ~nAg~   92 (270)
T 1yde_A           88 NNAGH   92 (270)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99875

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.85  E-value=3.1e-05  Score=56.88  Aligned_cols=85  Identities=21%  Similarity=0.172  Sum_probs=61.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc---CCccEEEEcCCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM---GTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~---~~~d~vid~~g~~  117 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.+              .|-.+.+.+++..   +++|++|+++|..
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------~D~~~~~~v~~~~~~~g~id~lv~nAg~~   70 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------LDISDEKSVYHYFETIGAFDHLIVTAGSY   70 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------CCTTCHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------cCCCCHHHHHHHHHHhCCCCEEEECCCCC
Confidence            4678999997 99999999999999999999887653              3444444444332   5799999998853


Q ss_pred             c--------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          118 H--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       118 ~--------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .                          ..+.+...++++|+++.++...
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~  119 (223)
T 3uce_A           71 APAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGML  119 (223)
T ss_dssp             CCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGG
T ss_pred             CCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchh
Confidence            1                          1233455667789999987653

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.85  E-value=0.00011  Score=54.96  Aligned_cols=75  Identities=17%  Similarity=0.279  Sum_probs=55.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+++   +..   ...|-.+.+.++++       .+++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGGI   87 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 99999999999999999999999988776665543   322   12344454444332       2489


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        88 d~li~~Ag~   96 (253)
T 3qiv_A           88 DYLVNNAAI   96 (253)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999986

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.84  E-value=0.00012  Score=55.50  Aligned_cols=77  Identities=22%  Similarity=0.263  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHH---HcCCcE---EecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~  105 (220)
                      -.++++||.|+ |++|.++++.+...|++|+++++ +.++.+.+.+   ..+...   ..|-.+.+.++++       .+
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g  105 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWG  105 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35789999997 99999999999999999999888 4444443332   334322   2345555444332       24


Q ss_pred             CccEEEEcCCCc
Q 027668          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~vid~~g~~  117 (220)
                      ++|++|+++|..
T Consensus       106 ~id~lv~nAg~~  117 (269)
T 4dmm_A          106 RLDVLVNNAGIT  117 (269)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            899999999864

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.84  E-value=0.00015  Score=54.59  Aligned_cols=75  Identities=20%  Similarity=0.333  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCcc---cHHHHHHHcCCcEE--ecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLGADSF--LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~~---~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+   |.+|..+++.+...|++|++++++++   ..+++.++.+....  .|-.+.+.++++       .++
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999985   69999999999889999999998875   33333333443222  355555444332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        87 iD~lv~~Ag~   96 (261)
T 2wyu_A           87 LDYLVHAIAF   96 (261)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.84  E-value=0.0001  Score=56.37  Aligned_cols=75  Identities=12%  Similarity=0.132  Sum_probs=53.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc-ccHHHHHHH----cCCcE---EecCCC----HHHHHHh-----
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVER----LGADS---FLVSRD----QDEMQAA-----  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~-~~~~~~~~~----~g~~~---v~~~~~----~~~~~~~-----  103 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++. ++.+.+.++    .+...   ..|-.+    .+.+.++     
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~  101 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF  101 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence            4688999997 9999999999999999999999987 655544333    34321   234445    4444332     


Q ss_pred             --cCCccEEEEcCCC
Q 027668          104 --MGTMDGIIDTVSA  116 (220)
Q Consensus       104 --~~~~d~vid~~g~  116 (220)
                        .+++|++|+++|.
T Consensus       102 ~~~g~iD~lvnnAG~  116 (288)
T 2x9g_A          102 RAFGRCDVLVNNASA  116 (288)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCC
Confidence              2489999999884

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.84  E-value=0.00012  Score=53.52  Aligned_cols=74  Identities=12%  Similarity=0.065  Sum_probs=59.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHh-cCCccEEEEcCCCcc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAVH  118 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~~  118 (220)
                      +|+|+|+|.+|..+++.+...|.+|+++++++++.+.+.+.+|...+. +..+.+.+++. ..++|.+|-+++...
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   77 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDE   77 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcH
Confidence            488999999999999999999999999999998887776667765443 44455556554 358999999998874

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.83  E-value=0.00011  Score=55.75  Aligned_cols=75  Identities=19%  Similarity=0.268  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++   |...   ..|-.+.+.++++       .+++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i  100 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV  100 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4689999997 99999999999999999999999987665544433   4321   2344555444322       2479


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus       101 D~lv~~Ag~  109 (277)
T 2rhc_B          101 DVLVNNAGR  109 (277)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999985

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.81  E-value=0.00021  Score=54.13  Aligned_cols=96  Identities=17%  Similarity=0.149  Sum_probs=70.5

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcCc-hHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .++|+.......++....--.|.+++|+|.| .+|.-+++++...|+.|++..+....+.                    
T Consensus       138 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L~--------------------  197 (288)
T 1b0a_A          138 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLR--------------------  197 (288)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHH--------------------
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhHH--------------------
Confidence            4666666666667666544688999999987 5799999999999999998865543222                    


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                       +....+|+||.++|.+..+..  +.+++|..++.+|...
T Consensus       198 -~~~~~ADIVI~Avg~p~lI~~--~~vk~GavVIDVgi~r  234 (288)
T 1b0a_A          198 -HHVENADLLIVAVGKPGFIPG--DWIKEGAIVIDVGINR  234 (288)
T ss_dssp             -HHHHHCSEEEECSCCTTCBCT--TTSCTTCEEEECCCEE
T ss_pred             -HHhccCCEEEECCCCcCcCCH--HHcCCCcEEEEccCCc
Confidence             222358999999998864332  3468899999888753

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.80  E-value=0.00011  Score=56.01  Aligned_cols=76  Identities=20%  Similarity=0.244  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~  105 (220)
                      ..++++||.|+ |++|.++++.+...|++|+++++ +.++.+.+.++   .|...   ..|-.+.+.++++       .+
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45789999997 99999999999999999999985 55444444333   34322   2244444433322       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus       107 ~iD~lvnnAg~  117 (280)
T 4da9_A          107 RIDCLVNNAGI  117 (280)
T ss_dssp             CCCEEEEECC-
T ss_pred             CCCEEEECCCc
Confidence            89999999986

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.80  E-value=5.3e-05  Score=55.63  Aligned_cols=98  Identities=27%  Similarity=0.266  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHHc---C-------CcEEecCCCHHHHHHhcCCc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERL---G-------ADSFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~---g-------~~~v~~~~~~~~~~~~~~~~  107 (220)
                      ++++++||-+|+|+ |..+..+++..|  .+|+.++.++...+.+.+.+   |       .-.+... +........+.|
T Consensus        75 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~f  152 (226)
T 1i1n_A           75 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-DGRMGYAEEAPY  152 (226)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES-CGGGCCGGGCCE
T ss_pred             CCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC-CcccCcccCCCc
Confidence            67899999999985 888888888766  58999999988766553322   2       1112221 211110112479


Q ss_pred             cEEEEcCCCcccHHHHHhccccCCEEEEecCC
Q 027668          108 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       108 d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      |+|+........+..+.+.|+++|+++..-..
T Consensus       153 D~i~~~~~~~~~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          153 DAIHVGAAAPVVPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEEEECSBBSSCCHHHHHTEEEEEEEEEEESC
T ss_pred             CEEEECCchHHHHHHHHHhcCCCcEEEEEEec
Confidence            99997776666778899999999999876443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=97.80  E-value=9.1e-05  Score=55.90  Aligned_cols=98  Identities=20%  Similarity=0.224  Sum_probs=67.6

Q ss_pred             hhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEE
Q 027668           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      .++.+...--.| +++|+|+|.+|.+.++.+...|++|++.+++.++.+.+.+++|..  ++  +.   .+. ..+|+|+
T Consensus       106 ~~l~~~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~--~~--~~---~~~-~~~Divi  176 (263)
T 2d5c_A          106 EALKAGGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR--AV--PL---EKA-REARLLV  176 (263)
T ss_dssp             HHHHHTTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE--EC--CG---GGG-GGCSEEE
T ss_pred             HHHHHhCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc--hh--hH---hhc-cCCCEEE
Confidence            344443322356 999999999999999999999999999999988777777777764  21  21   223 4789999


Q ss_pred             EcCCCccc--H-H-HHHhccccCCEEEEecC
Q 027668          112 DTVSAVHP--L-M-PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       112 d~~g~~~~--~-~-~~~~~l~~~g~iv~~g~  138 (220)
                      .|++....  . . .....++++..++.++.
T Consensus       177 ~~tp~~~~~~~~~~l~~~~l~~g~~viD~~~  207 (263)
T 2d5c_A          177 NATRVGLEDPSASPLPAELFPEEGAAVDLVY  207 (263)
T ss_dssp             ECSSTTTTCTTCCSSCGGGSCSSSEEEESCC
T ss_pred             EccCCCCCCCCCCCCCHHHcCCCCEEEEeec
Confidence            99987621  0 0 01355677776666554

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=97.80  E-value=5.5e-05  Score=55.99  Aligned_cols=103  Identities=28%  Similarity=0.288  Sum_probs=69.8

Q ss_pred             hhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCC-cEEecCCCH-HHHHHhcCCc
Q 027668           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA-DSFLVSRDQ-DEMQAAMGTM  107 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~-~~v~~~~~~-~~~~~~~~~~  107 (220)
                      ++... .+.++++||.+|+| .|..+..+++..+.+|+.++.+++..+.+.+.   .|. ...+...+. ... .....|
T Consensus        83 ~~~~l-~~~~~~~vLdiG~G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f  159 (235)
T 1jg1_A           83 MLEIA-NLKPGMNILEVGTG-SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF-PPKAPY  159 (235)
T ss_dssp             HHHHH-TCCTTCCEEEECCT-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCE
T ss_pred             HHHhc-CCCCCCEEEEEeCC-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCC-CCCCCc
Confidence            34444 36899999999998 68888899988778999999998766655443   343 211111121 110 011259


Q ss_pred             cEEEEcCCCcccHHHHHhccccCCEEEEecC
Q 027668          108 DGIIDTVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       108 d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      |+|+.+.........+.+.|+++|+++..-.
T Consensus       160 D~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          160 DVIIVTAGAPKIPEPLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             EEEEECSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             cEEEECCcHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9999877766566788899999999987543

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.79  E-value=0.00016  Score=54.72  Aligned_cols=75  Identities=16%  Similarity=0.314  Sum_probs=55.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC----cE-EecCCCHHHHHHhc-------CCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----DS-FLVSRDQDEMQAAM-------GTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~----~~-v~~~~~~~~~~~~~-------~~~d  108 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.++++.    .. ..|-.+.+.++++.       +++|
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   94 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   94 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5689999997 9999999999999999999999987766555555532    11 23445554444332       4899


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|+++|.
T Consensus        95 ~li~~Ag~  102 (278)
T 2bgk_A           95 IMFGNVGV  102 (278)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999874

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.78  E-value=0.00013  Score=55.94  Aligned_cols=75  Identities=24%  Similarity=0.300  Sum_probs=56.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC----c---EEecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA----D---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~----~---~v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.++.+.+.+++..    .   ...|-.+.+.++++       .++
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  119 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGA  119 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 9999999999999999999999998887776655531    1   12345555443322       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       120 iD~lvnnAg~  129 (293)
T 3rih_A          120 LDVVCANAGI  129 (293)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999885

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.78  E-value=0.00018  Score=55.24  Aligned_cols=76  Identities=26%  Similarity=0.351  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC------------cccHHHHHH---HcCCcE---EecCCCHHHHH
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS------------PSKKSEAVE---RLGADS---FLVSRDQDEMQ  101 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~------------~~~~~~~~~---~~g~~~---v~~~~~~~~~~  101 (220)
                      -.|+++||.|+ +++|.++++.+...|++|++++++            .++.++..+   ..|...   ..|-.+.+.++
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~  105 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQ  105 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHH
Confidence            35789999997 899999999999999999999876            333333322   334322   23555554443


Q ss_pred             Hh-------cCCccEEEEcCCC
Q 027668          102 AA-------MGTMDGIIDTVSA  116 (220)
Q Consensus       102 ~~-------~~~~d~vid~~g~  116 (220)
                      ++       .+++|++|+++|.
T Consensus       106 ~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          106 AAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHhCCCCEEEECCCC
Confidence            32       2489999999885

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.78  E-value=0.00016  Score=56.70  Aligned_cols=77  Identities=19%  Similarity=0.184  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHC-CC-eEEEEeCCcccHHHHHHHcC---CcE-EecCCCHHHHHHhcCCccEEEEc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAM-GV-KVTVISTSPSKKSEAVERLG---ADS-FLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~-g~-~v~~~~~~~~~~~~~~~~~g---~~~-v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      -.+.+|||.|+ |.+|..+++.+... |. +|+++++++.+...+.+.+.   ... ..|..+.+.+.+...++|+||.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~   98 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHA   98 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEEC
Confidence            45789999997 99999999988887 98 99999998876665544443   222 23556677777777899999999


Q ss_pred             CCCc
Q 027668          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      ++..
T Consensus        99 Aa~~  102 (344)
T 2gn4_A           99 AALK  102 (344)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9864

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.78  E-value=0.00037  Score=52.08  Aligned_cols=75  Identities=15%  Similarity=0.103  Sum_probs=50.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCe-EEEEeCCcc--cHHHHHHHc-CCc--E-EecCCCH-HHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVK-VTVISTSPS--KKSEAVERL-GAD--S-FLVSRDQ-DEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~-v~~~~~~~~--~~~~~~~~~-g~~--~-v~~~~~~-~~~~~~-------~~  105 (220)
                      .+++++|.|+ |.+|..+++.+...|++ |++++++.+  ..+++.+.. +..  . ..|-.+. +.+++.       .+
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   83 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence            4688999997 99999999999999996 888888763  334443333 221  1 1244443 333322       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus        84 ~id~lv~~Ag~   94 (254)
T 1sby_A           84 TVDILINGAGI   94 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            89999999985

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.78  E-value=9.8e-05  Score=57.92  Aligned_cols=50  Identities=26%  Similarity=0.387  Sum_probs=41.1

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF   91 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v   91 (220)
                      -+|++|.|.|.|.+|+.+++.++..|++|++.+.+.++ .+..+++|++.+
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~ga~~v  222 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVALGHTAV  222 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHTTCEEC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhcCCEEe
Confidence            57899999999999999999999999999977777654 445567776543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.78  E-value=0.00018  Score=57.84  Aligned_cols=95  Identities=17%  Similarity=0.347  Sum_probs=70.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHh-cCCccEEEEcCCCccc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAVHP  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~~~  119 (220)
                      .+.+|+|+|.|.+|+.+++.++..|.+|++++.++++.+.+ ++.|...++ |..+.+.+++. ...+|.||-+++....
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~-~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~   81 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETL-RKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQT   81 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHH-HHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-HhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHH
Confidence            34679999999999999999999999999999999988777 578876444 55556666655 2489999999988643


Q ss_pred             HHH---HHhccccCCEEEEec
Q 027668          120 LMP---LIGLLKSQGKLVLLG  137 (220)
Q Consensus       120 ~~~---~~~~l~~~g~iv~~g  137 (220)
                      -..   ..+.+.+..+++.-.
T Consensus        82 n~~i~~~ar~~~p~~~Iiara  102 (413)
T 3l9w_A           82 NLQLTEMVKEHFPHLQIIARA  102 (413)
T ss_dssp             HHHHHHHHHHHCTTCEEEEEE
T ss_pred             HHHHHHHHHHhCCCCeEEEEE
Confidence            222   333445665666543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.77  E-value=0.0002  Score=53.88  Aligned_cols=76  Identities=13%  Similarity=0.234  Sum_probs=55.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |.+|.++++.+...|++|++++++.++.+.+.+++   |...   ..|-.+.+.+++.       .+++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   85 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   85 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            4689999997 99999999999999999999999987666554443   4321   2344555443322       2489


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|+++|..
T Consensus        86 d~lv~nAg~~   95 (262)
T 1zem_A           86 DFLFNNAGYQ   95 (262)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999998753

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.77  E-value=0.00043  Score=52.61  Aligned_cols=77  Identities=10%  Similarity=0.192  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcC-ch--HHHHHHHHHHHCCCeEEEEeCCc--ccHHHHHHHcCCcEE--ecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GG--LGHVAVKFAKAMGVKVTVISTSP--SKKSEAVERLGADSF--LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~--~G~~~~~~~~~~g~~v~~~~~~~--~~~~~~~~~~g~~~v--~~~~~~~~~~~~-------~~~  106 (220)
                      -.++++||.|+ |.  +|..+++.+...|++|++++++.  +..+++.++.+....  .|-.+.+.++++       .+.
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            45789999985 44  99999999999999999999987  455555445553222  344555444332       247


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++|+++|..
T Consensus       104 id~li~nAg~~  114 (280)
T 3nrc_A          104 LDAIVHSIAFA  114 (280)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEECCccC
Confidence            99999999853

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.77  E-value=5.2e-05  Score=55.79  Aligned_cols=98  Identities=19%  Similarity=0.224  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCC-------CeEEEEeCCcccHHHHHHHc----------CCcEEecCCCHHHHH
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG-------VKVTVISTSPSKKSEAVERL----------GADSFLVSRDQDEMQ  101 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g-------~~v~~~~~~~~~~~~~~~~~----------g~~~v~~~~~~~~~~  101 (220)
                      .++++++||-+|+|+ |..+..+++..|       .+|+.++.+++..+.+.+.+          ..-.+...+..+.. 
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  158 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY-  158 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC-
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC-
Confidence            368899999999986 888888888766       49999999988665553322          11122222211111 


Q ss_pred             HhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecC
Q 027668          102 AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       102 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ...+.||+|+.+.........+.+.|+++|+++..-.
T Consensus       159 ~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          159 PPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPVG  195 (227)
T ss_dssp             GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEES
T ss_pred             CcCCCccEEEECCchHHHHHHHHHHhcCCCEEEEEEe
Confidence            1124799999887776667889999999999987543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.77  E-value=0.0002  Score=55.89  Aligned_cols=90  Identities=17%  Similarity=0.184  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--  118 (220)
                      -.|++|.|+|.|.+|..+++.++..|++|++.+++..+ +.+ ..+|+...    +   +.++....|+|+.++....  
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~~----~---l~ell~~aDvV~l~~P~t~~t  233 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVS-ASFGVQQL----P---LEEIWPLCDFITVHTPLLPST  233 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHH-HHTTCEEC----C---HHHHGGGCSEEEECCCCCTTT
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhh-hhcCceeC----C---HHHHHhcCCEEEEecCCCHHH
Confidence            36789999999999999999999999999999987654 333 56776531    2   3344557899999887643  


Q ss_pred             --cH-HHHHhccccCCEEEEecCC
Q 027668          119 --PL-MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       119 --~~-~~~~~~l~~~g~iv~~g~~  139 (220)
                        .+ ...+..+++++.++.++..
T Consensus       234 ~~li~~~~l~~mk~gailIN~arg  257 (335)
T 2g76_A          234 TGLLNDNTFAQCKKGVRVVNCARG  257 (335)
T ss_dssp             TTSBCHHHHTTSCTTEEEEECSCT
T ss_pred             HHhhCHHHHhhCCCCcEEEECCCc
Confidence              22 3577889999999988763

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.77  E-value=0.00017  Score=54.83  Aligned_cols=76  Identities=17%  Similarity=0.295  Sum_probs=52.5

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC------------cccHHHHH---HHcCCcEE---ecCCCHHHHH
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS------------PSKKSEAV---ERLGADSF---LVSRDQDEMQ  101 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~------------~~~~~~~~---~~~g~~~v---~~~~~~~~~~  101 (220)
                      -.++++||.|+ |++|.++++.+...|++|++++++            .++.+...   +..|....   .|-.+.+.++
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~   87 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALE   87 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH
Confidence            35789999997 999999999999999999999986            22233222   23443322   2445554443


Q ss_pred             Hh-------cCCccEEEEcCCC
Q 027668          102 AA-------MGTMDGIIDTVSA  116 (220)
Q Consensus       102 ~~-------~~~~d~vid~~g~  116 (220)
                      ++       .+++|++|+++|.
T Consensus        88 ~~~~~~~~~~g~id~lv~nAg~  109 (281)
T 3s55_A           88 SFVAEAEDTLGGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCC
Confidence            32       2489999999985

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.76  E-value=0.00052  Score=52.28  Aligned_cols=75  Identities=13%  Similarity=0.218  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCcc---cHHHHHHHcCC-cE-EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPS---KKSEAVERLGA-DS-FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~~---~~~~~~~~~g~-~~-v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+   |.+|.++++.+...|++|++++++++   ..+++.+..+. .. ..|-.+.+.++++       .++
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5688999985   69999999999999999999998874   23333333342 22 2355555444332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       100 iD~lv~~Ag~  109 (285)
T 2p91_A          100 LDIIVHSIAY  109 (285)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999975

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.76  E-value=0.00017  Score=53.93  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-----C-C--c-EEecCCCHHHHHHh-------
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----G-A--D-SFLVSRDQDEMQAA-------  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-----g-~--~-~v~~~~~~~~~~~~-------  103 (220)
                      ..++++||.|+ |++|.++++.+...|++|++++++.++.+.+.+++     + .  . ...|-.+.+.++++       
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            35688999997 99999999999999999999999988766665443     2 1  1 12355555443322       


Q ss_pred             cCCccEEEEcCCC
Q 027668          104 MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ~~~~d~vid~~g~  116 (220)
                      .+++|++|+++|.
T Consensus        85 ~g~iD~lvnnAg~   97 (250)
T 3nyw_A           85 YGAVDILVNAAAM   97 (250)
T ss_dssp             HCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2489999999986

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.76  E-value=0.00012  Score=57.42  Aligned_cols=91  Identities=20%  Similarity=0.257  Sum_probs=67.6

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--  118 (220)
                      -.|.+|.|+|.|.+|..+++.++.+|++|++.+++....+.+ ++.|+..+   .   .+.++....|+|+.++...+  
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~---~---~l~ell~~aDvV~l~~Plt~~t  234 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELE-KETGAKFV---E---DLNEMLPKCDVIVINMPLTEKT  234 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHH-HHHCCEEC---S---CHHHHGGGCSEEEECSCCCTTT
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHH-HhCCCeEc---C---CHHHHHhcCCEEEECCCCCHHH
Confidence            357899999999999999999999999999999876554444 56676532   1   23444557899998886431  


Q ss_pred             --cH-HHHHhccccCCEEEEecC
Q 027668          119 --PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 --~~-~~~~~~l~~~g~iv~~g~  138 (220)
                        .+ ...+..|+++..++.++.
T Consensus       235 ~~li~~~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          235 RGMFNKELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             TTCBSHHHHHHSCTTEEEEECSC
T ss_pred             HHhhcHHHHhcCCCCCEEEECcC
Confidence              12 456778888888888874

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.76  E-value=0.00029  Score=53.41  Aligned_cols=76  Identities=14%  Similarity=0.214  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHHhc------CCc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAAM------GTM  107 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~------~~~  107 (220)
                      -.|+++||.|+ |++|.++++.+...|++|+++++.+ +.++..+++   +..   ...|-.+.+.++++.      +++
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~i  107 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTD-GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRV  107 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESST-HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHH-HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCC
Confidence            35789999997 9999999999999999999999654 333333332   322   123444544443321      489


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|+++|..
T Consensus       108 D~lv~nAg~~  117 (273)
T 3uf0_A          108 DVLVNNAGII  117 (273)
T ss_dssp             CEEEECCCCC
T ss_pred             cEEEECCCCC
Confidence            9999998863

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.76  E-value=0.00028  Score=52.28  Aligned_cols=74  Identities=22%  Similarity=0.263  Sum_probs=51.1

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEE-eCCcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCCc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~-~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      |+++||.|+ |.+|..+++.+...|++|+++ .+++++.+.+.++   .+...   ..|-.+.+.+++.       .+++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            468899997 999999999999999999985 6776655444332   24321   1344555444332       2479


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        81 d~li~~Ag~   89 (244)
T 1edo_A           81 DVVVNNAGI   89 (244)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999885

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.76  E-value=0.00011  Score=59.01  Aligned_cols=94  Identities=17%  Similarity=0.171  Sum_probs=67.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCC---CeEEEEeCCcccHHHHHHHcC------CcE-EecCCCHHHHHHhcC--CccEEE
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMG---VKVTVISTSPSKKSEAVERLG------ADS-FLVSRDQDEMQAAMG--TMDGII  111 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g---~~v~~~~~~~~~~~~~~~~~g------~~~-v~~~~~~~~~~~~~~--~~d~vi  111 (220)
                      .+|+|+|+|.+|..+++.+...|   .+|++++++.++.+.+.++++      ... ..|..+.+.+.++..  ++|+||
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            37899999999999999888887   389999999988777766653      222 335555666666554  599999


Q ss_pred             EcCCCcccHHHHHhccccCCEEEEec
Q 027668          112 DTVSAVHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       112 d~~g~~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      +|++..........+++.+-.++.+.
T Consensus        82 n~ag~~~~~~v~~a~l~~g~~vvD~a  107 (405)
T 4ina_A           82 NIALPYQDLTIMEACLRTGVPYLDTA  107 (405)
T ss_dssp             ECSCGGGHHHHHHHHHHHTCCEEESS
T ss_pred             ECCCcccChHHHHHHHHhCCCEEEec
Confidence            99987533344555667777766543

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.75  E-value=0.00013  Score=56.52  Aligned_cols=89  Identities=25%  Similarity=0.352  Sum_probs=66.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--  118 (220)
                      -.|.+|.|+|.|.+|..+++.++..|++|++.+++.++. .+ +++|+...    +.   .+.....|+|+.++....  
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~-~~~g~~~~----~l---~ell~~aDvVvl~~P~~~~t  210 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KA-EKINAKAV----SL---EELLKNSDVISLHVTVSKDA  210 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HH-HHTTCEEC----CH---HHHHHHCSEEEECCCCCTTS
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HH-HhcCceec----CH---HHHHhhCCEEEEeccCChHH
Confidence            467899999999999999999999999999999887653 33 56776531    22   223336899999987532  


Q ss_pred             --cH-HHHHhccccCCEEEEecC
Q 027668          119 --PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 --~~-~~~~~~l~~~g~iv~~g~  138 (220)
                        .+ ...+..+++++.++.++.
T Consensus       211 ~~li~~~~l~~mk~ga~lIn~ar  233 (313)
T 2ekl_A          211 KPIIDYPQFELMKDNVIIVNTSR  233 (313)
T ss_dssp             CCSBCHHHHHHSCTTEEEEESSC
T ss_pred             HHhhCHHHHhcCCCCCEEEECCC
Confidence              22 456678888888888765

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=97.75  E-value=9.7e-05  Score=54.53  Aligned_cols=98  Identities=13%  Similarity=0.139  Sum_probs=67.2

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHH---cCC---cEEecCCCHHHHHHh--cCCccEE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVER---LGA---DSFLVSRDQDEMQAA--MGTMDGI  110 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~---~g~---~~v~~~~~~~~~~~~--~~~~d~v  110 (220)
                      ..++++||.+|+| .|..+..+++.. +.+++.++.+++..+.+.+.   .|.   -.++..+..+.....  .+.||+|
T Consensus        52 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I  130 (233)
T 2gpy_A           52 MAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVL  130 (233)
T ss_dssp             HHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEE
T ss_pred             ccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEE
Confidence            4678899999998 588888899887 56999999998876666443   243   122222222323333  3579999


Q ss_pred             EEcCCCc---ccHHHHHhccccCCEEEEecC
Q 027668          111 IDTVSAV---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       111 id~~g~~---~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      |......   ..+..+.+.|++||.++....
T Consensus       131 ~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  161 (233)
T 2gpy_A          131 FIDAAKGQYRRFFDMYSPMVRPGGLILSDNV  161 (233)
T ss_dssp             EEEGGGSCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred             EECCCHHHHHHHHHHHHHHcCCCeEEEEEcC
Confidence            8665432   235678889999999988644

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.75  E-value=0.00019  Score=53.71  Aligned_cols=75  Identities=21%  Similarity=0.298  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHhc-------CCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+++   +...   ..|-.+.+.+++..       +++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV   91 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            5689999997 99999999999999999999999877655443332   4321   23445554443322       479


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|.++|.
T Consensus        92 d~vi~~Ag~  100 (260)
T 3awd_A           92 DILVACAGI  100 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.75  E-value=0.00016  Score=53.74  Aligned_cols=75  Identities=17%  Similarity=0.273  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH----cCCcE---EecCCCHHHHHHhc-------CC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LGADS---FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~g~~~---v~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.++    .+...   ..|-.+.+.+++..       ++
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDG   85 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            4688999997 9999999999999999999999987765554333    34321   12445554443332       48


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        86 ~d~vi~~Ag~   95 (248)
T 2pnf_A           86 IDILVNNAGI   95 (248)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999885

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.75  E-value=9.6e-05  Score=58.42  Aligned_cols=91  Identities=15%  Similarity=0.197  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc-
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH-  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  118 (220)
                      -.|.+|.|+|.|.+|..+++.++.+|++ |++.+++..+.+.+ +++|+..+   .+   ..++....|+|+.++.... 
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~-~~~g~~~~---~~---l~ell~~aDvV~l~~P~t~~  234 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAE-EKVGARRV---EN---IEELVAQADIVTVNAPLHAG  234 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHH-HHTTEEEC---SS---HHHHHHTCSEEEECCCCSTT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHH-HhcCcEec---CC---HHHHHhcCCEEEECCCCChH
Confidence            3678999999999999999999999997 99999877655444 56675422   12   2333347899999887642 


Q ss_pred             ---cH-HHHHhccccCCEEEEecC
Q 027668          119 ---PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 ---~~-~~~~~~l~~~g~iv~~g~  138 (220)
                         .+ ...+..|++++.++.++.
T Consensus       235 t~~li~~~~l~~mk~ga~lIn~ar  258 (364)
T 2j6i_A          235 TKGLINKELLSKFKKGAWLVNTAR  258 (364)
T ss_dssp             TTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             HHHHhCHHHHhhCCCCCEEEECCC
Confidence               23 346678899888888875

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.75  E-value=0.00016  Score=54.21  Aligned_cols=74  Identities=22%  Similarity=0.298  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++ +++.++++... ..|-.+.+.+++.       .+++|++|+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv~   83 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN   83 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhCCEEEeeCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999997 999999999999999999999998776 55545554211 2244454433322       248999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        84 ~Ag~   87 (256)
T 2d1y_A           84 NAAI   87 (256)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9885

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.75  E-value=0.00026  Score=51.65  Aligned_cols=91  Identities=22%  Similarity=0.322  Sum_probs=61.9

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhcCCccEEEEcCCCc-----
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAMGTMDGIIDTVSAV-----  117 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~~g~~-----  117 (220)
                      +|||.|+ |.+|..+++.+...|.+|+++++++++...+ ..-+...+. |..+.+.  +..+++|+||.++|..     
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~~~~   78 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR-LGATVATLVKEPLVLTE--ADLDSVDAVVDALSVPWGSGR   78 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-TCTTSEEEECCGGGCCH--HHHTTCSEEEECCCCCTTSSC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccc-cCCCceEEecccccccH--hhcccCCEEEECCccCCCcch
Confidence            5899997 9999999999999999999999998765544 223444332 3222223  4456899999999873     


Q ss_pred             -----ccHHHHHhccc-cCCEEEEecC
Q 027668          118 -----HPLMPLIGLLK-SQGKLVLLGA  138 (220)
Q Consensus       118 -----~~~~~~~~~l~-~~g~iv~~g~  138 (220)
                           ......++.++ .+++++.++.
T Consensus        79 ~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           79 GYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             THHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             hhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence                 01233444444 3478888864

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.74  E-value=0.00016  Score=53.86  Aligned_cols=74  Identities=19%  Similarity=0.215  Sum_probs=54.1

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCc---EEecCCCHHHHHHhc-------CCc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GAD---SFLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~---~v~~~~~~~~~~~~~-------~~~  107 (220)
                      ++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++    +..   ...|-.+.+.+++..       +++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI   81 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            578999997 99999999999999999999999987766654444    322   123445554444332       489


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        82 d~li~~Ag~   90 (250)
T 2cfc_A           82 DVLVNNAGI   90 (250)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.74  E-value=0.00087  Score=52.48  Aligned_cols=132  Identities=15%  Similarity=0.183  Sum_probs=82.3

Q ss_pred             CEEEEEcCchHHHHHHHHHH-H-CCCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcC--CccEEEEcCCCcc
Q 027668           44 MHVGVVGLGGLGHVAVKFAK-A-MGVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~-~-~g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~d~vid~~g~~~  118 (220)
                      -+|.|+|+|.+|...++.++ . .+++++ +.++++++.+.+.+++|...+++  +   .+++..  ++|+|+.|++...
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~--~---~~~~l~~~~~D~V~i~tp~~~   83 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT--N---YKDMIDTENIDAIFIVAPTPF   83 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES--C---HHHHHTTSCCSEEEECSCGGG
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC--C---HHHHhcCCCCCEEEEeCChHh
Confidence            47899999999998888777 4 466765 45666667767777888755543  2   223332  7999999999876


Q ss_pred             cHHHHHhccccCCEEEEecCCCCCcccC-cccc----ccC-CcEEE-EeeccCHHHHHHHHHHHHhCCcce
Q 027668          119 PLMPLIGLLKSQGKLVLLGAPEKPLELP-AFPL----LTG-EKIVG-GSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       119 ~~~~~~~~l~~~g~iv~~g~~~~~~~~~-~~~~----~~~-~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~  182 (220)
                      ....+..+++.| +-|++.-+.. .+.. ...+    -.+ +..+. +........++.+.+++.+|.+-.
T Consensus        84 h~~~~~~al~~G-~~v~~eKp~~-~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~~g~iG~  152 (346)
T 3cea_A           84 HPEMTIYAMNAG-LNVFCEKPLG-LDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVDNGDIGK  152 (346)
T ss_dssp             HHHHHHHHHHTT-CEEEECSCCC-SCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHCC-CEEEEcCCCC-CCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHHcCCCCC
Confidence            677777888765 4444533221 1111 1111    123 44443 333333345888888998887643

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.74  E-value=0.00015  Score=54.25  Aligned_cols=75  Identities=21%  Similarity=0.361  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC-cccHHHHHHHc---CCc--E-EecCCCHHHHHHhc-------CC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS-PSKKSEAVERL---GAD--S-FLVSRDQDEMQAAM-------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~-~~~~~~~~~~~---g~~--~-v~~~~~~~~~~~~~-------~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++ .++.+.+.+++   +..  . ..|-.+.+.+++..       ++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4678999997 999999999999999999999998 66655543333   422  1 23445554444332       38


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        86 id~vi~~Ag~   95 (258)
T 3afn_B           86 IDVLINNAGG   95 (258)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999985

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=97.74  E-value=0.00072  Score=53.31  Aligned_cols=87  Identities=18%  Similarity=0.334  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..+++.++.+|++|++.+++.. .+.+ ...|+...    +   +.++....|+|+-++....   
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~-~~~g~~~~----~---l~ell~~aDvV~l~~Plt~~T~  245 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLP-RSML-EENGVEPA----S---LEDVLTKSDFIFVVAAVTSENK  245 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSC-HHHH-HHTTCEEC----C---HHHHHHSCSEEEECSCSSCC--
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCC-HHHH-hhcCeeeC----C---HHHHHhcCCEEEEcCcCCHHHH
Confidence            478999999999999999999999999999988753 3333 45676421    2   3344457899998876432   


Q ss_pred             -cH-HHHHhccccCCEEEEec
Q 027668          119 -PL-MPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g  137 (220)
                       .+ ...+..|++++.++.++
T Consensus       246 ~li~~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          246 RFLGAEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             -CCCHHHHHTSCTTCEEEECS
T ss_pred             hhcCHHHHhcCCCCcEEEECc
Confidence             12 45677899999999887

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.74  E-value=0.00018  Score=54.74  Aligned_cols=77  Identities=23%  Similarity=0.303  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      ..++++||.|+ |++|.++++.+...|++|++++++.++.+.+.+++   |...   ..|-.+.+.++++       .++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            45789999997 99999999999999999999999988766655444   3322   2345555444332       248


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++|+++|..
T Consensus       102 id~lv~nAg~~  112 (279)
T 3sju_A          102 IGILVNSAGRN  112 (279)
T ss_dssp             CCEEEECCCCC
T ss_pred             CcEEEECCCCC
Confidence            99999999863

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.74  E-value=0.00038  Score=53.92  Aligned_cols=77  Identities=23%  Similarity=0.308  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC------------cccHHHHH---HHcCCcEE---ecCCCHHHHH
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS------------PSKKSEAV---ERLGADSF---LVSRDQDEMQ  101 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~------------~~~~~~~~---~~~g~~~v---~~~~~~~~~~  101 (220)
                      -.|+++||.|+ |++|.++++.+...|++|++++++            .++.++..   +..|....   .|-.+.+.++
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  123 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQ  123 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            35789999997 999999999999999999998875            33333332   23343322   3455554443


Q ss_pred             Hh-------cCCccEEEEcCCCc
Q 027668          102 AA-------MGTMDGIIDTVSAV  117 (220)
Q Consensus       102 ~~-------~~~~d~vid~~g~~  117 (220)
                      ++       .+++|++|+++|..
T Consensus       124 ~~~~~~~~~~g~iD~lVnnAg~~  146 (317)
T 3oec_A          124 AVVDEALAEFGHIDILVSNVGIS  146 (317)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCCC
Confidence            32       24899999999853

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.73  E-value=0.00019  Score=53.48  Aligned_cols=76  Identities=25%  Similarity=0.303  Sum_probs=51.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc-ccHHHHHH---HcCCcE---EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~-~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |.+|.++++.+...|++|+++++.+ ++.+.+.+   ..|...   ..|-.+.+.++++       .++
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4678999997 9999999999999999999887744 44444333   334332   2344455444332       248


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++|+++|..
T Consensus        83 id~lv~nAg~~   93 (246)
T 3osu_A           83 LDVLVNNAGIT   93 (246)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            99999999863

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.73  E-value=0.00022  Score=56.21  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=72.2

Q ss_pred             hhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC----ccc----HHHHHHHcCCcEEecCCC
Q 027668           26 AGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS----PSK----KSEAVERLGADSFLVSRD   96 (220)
Q Consensus        26 ~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~----~~~----~~~~~~~~g~~~v~~~~~   96 (220)
                      ...+.+.+++..+.--++.+|+|+|+|..|..+++++...|+ ++++++++    .++    +....+.|.... -....
T Consensus       175 ~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~-~~~~~  253 (388)
T 1vl6_A          175 VSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARIT-NPERL  253 (388)
T ss_dssp             HHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTS-CTTCC
T ss_pred             HHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhh-hccCc
Confidence            334444555544422466899999999999999999999999 89999988    544    222222332110 00112


Q ss_pred             HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668           97 QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        97 ~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ...+.+...++|++|-+++..-.-+..++.|+++..+..+..+.
T Consensus       254 ~~~L~eav~~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSNPt  297 (388)
T 1vl6_A          254 SGDLETALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPV  297 (388)
T ss_dssp             CSCHHHHHTTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             hhhHHHHHccCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCCCC
Confidence            23355555689999999884322346777788777665555543

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=97.73  E-value=0.00019  Score=54.17  Aligned_cols=96  Identities=23%  Similarity=0.363  Sum_probs=69.7

Q ss_pred             ccchhhhhhhhhhHhccCCCCCCEEEEEcCc-hHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHHcCCcEEecCCCHH
Q 027668           22 PLLCAGITVYSPLRFYGLDKPGMHVGVVGLG-GLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERLGADSFLVSRDQD   98 (220)
Q Consensus        22 ~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g-~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~   98 (220)
                      .++|+...+...+++..---.|++++|+|.| .+|..+++++...  |+.|++..+....                    
T Consensus       137 ~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t~~--------------------  196 (281)
T 2c2x_A          137 PLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGTRD--------------------  196 (281)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTCSC--------------------
T ss_pred             CCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECchhH--------------------
Confidence            4566666666666666533588999999987 5799999999999  8899887544322                    


Q ss_pred             HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668           99 EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        99 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                       +.+....+|+||.++|.+..+.  -+.++++..++.+|...
T Consensus       197 -L~~~~~~ADIVI~Avg~p~~I~--~~~vk~GavVIDVgi~r  235 (281)
T 2c2x_A          197 -LPALTRQADIVVAAVGVAHLLT--ADMVRPGAAVIDVGVSR  235 (281)
T ss_dssp             -HHHHHTTCSEEEECSCCTTCBC--GGGSCTTCEEEECCEEE
T ss_pred             -HHHHHhhCCEEEECCCCCcccC--HHHcCCCcEEEEccCCC
Confidence             3333457899999999886433  34478888888887653

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.73  E-value=0.00027  Score=52.43  Aligned_cols=73  Identities=23%  Similarity=0.153  Sum_probs=55.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      .+.+|||.|+ |.+|..+++.+...  |++|+++++++++.+.+  .-+... ..|..+.+.+.+...++|+||.++|.
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI--GGEADVFIGDITDADSINPAFQGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc--CCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence            4678999997 99999999999888  78999999987654332  123333 23556667777777789999999874

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.73  E-value=8.6e-05  Score=56.51  Aligned_cols=101  Identities=18%  Similarity=0.149  Sum_probs=65.7

Q ss_pred             hhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCcc
Q 027668           30 VYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        30 a~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  108 (220)
                      ...+|+..+.--.+++++|+|+|++|.+++..+...|+ +|+++.|+.++.+.++++++   ....   +.+.+ . .+|
T Consensus       109 ~~~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~---~~~~---~~l~~-l-~~D  180 (282)
T 3fbt_A          109 FGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFK---VISY---DELSN-L-KGD  180 (282)
T ss_dssp             HHHHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSE---EEEH---HHHTT-C-CCS
T ss_pred             HHHHHHHcCCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcC---cccH---HHHHh-c-cCC
Confidence            34445543322468899999999999999999999999 99999999887766655442   2211   22223 2 799


Q ss_pred             EEEEcCCCcc--c---HHHHHhccccCCEEEEecC
Q 027668          109 GIIDTVSAVH--P---LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       109 ~vid~~g~~~--~---~~~~~~~l~~~g~iv~~g~  138 (220)
                      +||+|++...  .   .......++++..++.+..
T Consensus       181 ivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY  215 (282)
T 3fbt_A          181 VIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIY  215 (282)
T ss_dssp             EEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCC
T ss_pred             EEEECCccCccCCCccCCCCHHHcCCCCEEEEEee
Confidence            9999985421  0   0112344666666555543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.73  E-value=0.00013  Score=55.37  Aligned_cols=75  Identities=16%  Similarity=0.218  Sum_probs=54.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC--cE-E--ecCCCHHHHHHh-------cCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DS-F--LVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~--~~-v--~~~~~~~~~~~~-------~~~~d  108 (220)
                      .++++||.|+ |.+|.++++.+...|++|+++++++++.+++.+++..  .. .  .|-.+.+.++++       .+++|
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  107 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLD  107 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            5689999997 9999999999999999999999998776665554421  21 1  244444433322       24899


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|+++|.
T Consensus       108 ~lvnnAg~  115 (276)
T 2b4q_A          108 ILVNNAGT  115 (276)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999984

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.72  E-value=0.00049  Score=51.87  Aligned_cols=69  Identities=19%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++      .-.... ..|-.+.+.+++.       .+++|++|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG------EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999997 999999999999999999999988654      111222 2355555444332       247999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        81 ~Ag~   84 (264)
T 2dtx_A           81 NAGI   84 (264)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9985

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.72  E-value=8.7e-05  Score=55.49  Aligned_cols=100  Identities=16%  Similarity=0.217  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEE-eCCcccHHHHHHH---cCCcEE---ecCCCHHHHHHhc--------
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVER---LGADSF---LVSRDQDEMQAAM--------  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~-~~~~~~~~~~~~~---~g~~~v---~~~~~~~~~~~~~--------  104 (220)
                      -.++++||.|+ |++|.++++.+...|++|+++ .++.++.++..++   .+....   .|-.+.+.++...        
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ   84 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhc
Confidence            35789999997 999999999999999999886 5555544444333   233211   2344443332221        


Q ss_pred             -----CCccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          105 -----GTMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       105 -----~~~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                           +.+|++|+++|...                         ..+.++..++++|+++.++...
T Consensus        85 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~  150 (255)
T 3icc_A           85 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA  150 (255)
T ss_dssp             HHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred             ccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChh
Confidence                 14999999988631                         1123344556788999988754

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.72  E-value=0.00026  Score=53.33  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEc-C--chHHHHHHHHHHHCCCeEEEEeCCccc---HHHHHHHcCC-c-EEecCCCHHHHHHh-------c
Q 027668           40 DKPGMHVGVVG-L--GGLGHVAVKFAKAMGVKVTVISTSPSK---KSEAVERLGA-D-SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        40 ~~~~~~vlI~G-~--g~~G~~~~~~~~~~g~~v~~~~~~~~~---~~~~~~~~g~-~-~v~~~~~~~~~~~~-------~  104 (220)
                      ..++++|||.| +  |++|..+++.+...|++|+++++++..   .+++.++.+. . ...|-.+.+.++++       .
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35788999998 3  699999999999999999999888543   2333334442 2 22355555444332       2


Q ss_pred             CCccEEEEcCCCcc------------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          105 GTMDGIIDTVSAVH------------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       105 ~~~d~vid~~g~~~------------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +++|++|+++|...                              ..+.++..++++|+++.++...
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  156 (271)
T 3ek2_A           91 DSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLG  156 (271)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGG
T ss_pred             CCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccc
Confidence            48999999987531                              1123444566688999887643

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.72  E-value=0.00018  Score=54.00  Aligned_cols=75  Identities=16%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++   +...   ..|-.+.+.+++.       .+++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   92 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGV   92 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999997 99999999999999999999999887655543332   4321   2344454433322       2489


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        93 D~lv~~Ag~  101 (260)
T 2zat_A           93 DILVSNAAV  101 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.71  E-value=0.00016  Score=55.36  Aligned_cols=43  Identities=19%  Similarity=0.070  Sum_probs=36.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEe-CCcccHHHHHH
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVE   84 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~   84 (220)
                      .++++||.|+ |++|.++++.+...|++|++++ ++.++.+.+.+
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~   52 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSA   52 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Confidence            4688999997 9999999999999999999999 88776655544

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.71  E-value=4.4e-05  Score=57.95  Aligned_cols=102  Identities=19%  Similarity=0.123  Sum_probs=65.3

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC--cE-EecCCCHHHHHHhc-CC
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DS-FLVSRDQDEMQAAM-GT  106 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~--~~-v~~~~~~~~~~~~~-~~  106 (220)
                      ..+|+..+.--.+++++|+|+|++|.+++..+...|.+|+++.++.++.+.+.++++.  .. ..+.      .+.. +.
T Consensus       107 ~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~------~~~~~~~  180 (272)
T 1p77_A          107 VTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSM------DSIPLQT  180 (272)
T ss_dssp             HHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEG------GGCCCSC
T ss_pred             HHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeH------HHhccCC
Confidence            3445443322367899999999999999999999999999999998887777666643  11 2211      1222 37


Q ss_pred             ccEEEEcCCCcccHH---HHHhccccCCEEEEecC
Q 027668          107 MDGIIDTVSAVHPLM---PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       107 ~d~vid~~g~~~~~~---~~~~~l~~~g~iv~~g~  138 (220)
                      +|++|+|++....-.   .....++++..++.+..
T Consensus       181 ~DivIn~t~~~~~~~~~~i~~~~l~~~~~v~D~~y  215 (272)
T 1p77_A          181 YDLVINATSAGLSGGTASVDAEILKLGSAFYDMQY  215 (272)
T ss_dssp             CSEEEECCCC-------CCCHHHHHHCSCEEESCC
T ss_pred             CCEEEECCCCCCCCCCCCCCHHHcCCCCEEEEeeC
Confidence            999999998763210   01123455555555544

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.71  E-value=0.00032  Score=52.39  Aligned_cols=70  Identities=19%  Similarity=0.271  Sum_probs=51.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.+.     ++.+... ..|-.+.+.+.+.       .+++|++|+
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~-----~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv~   80 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ-----EQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN   80 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS-----SCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh-----hcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999997 999999999999999999999988652     2234322 2355555444332       248999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        81 ~Ag~   84 (250)
T 2fwm_X           81 AAGI   84 (250)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9985

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.71  E-value=0.0002  Score=54.25  Aligned_cols=75  Identities=21%  Similarity=0.326  Sum_probs=52.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCcE---EecCCCHHHHHHhc-------CCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADS---FLVSRDQDEMQAAM-------GTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~~-------~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+   ..+...   ..|-.+.+.+++..       +.+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i  112 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTI  112 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            5689999997 999999999988899999999998776554432   234321   23444554443322       469


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus       113 d~li~~Ag~  121 (279)
T 3ctm_A          113 DVFVANAGV  121 (279)
T ss_dssp             SEEEECGGG
T ss_pred             CEEEECCcc
Confidence            999999874

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.70  E-value=0.0002  Score=53.89  Aligned_cols=75  Identities=21%  Similarity=0.290  Sum_probs=54.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHhc--------CC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAAM--------GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~~--------~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++   +...   ..|-.+.+.++++.        ++
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   92 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   92 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5688999997 99999999999999999999999877665543332   3321   23444544443322        58


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        93 id~li~~Ag~  102 (266)
T 1xq1_A           93 LDILINNLGA  102 (266)
T ss_dssp             CSEEEEECCC
T ss_pred             CcEEEECCCC
Confidence            9999999885

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.70  E-value=0.00018  Score=54.38  Aligned_cols=71  Identities=20%  Similarity=0.247  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHh-------cCCccEEE
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~-------~~~~d~vi  111 (220)
                      ..+++|||.|+ |++|.++++.+...|++|++++++.+....     ... ...|-.+.+.++++       .+++|++|
T Consensus        12 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv   86 (269)
T 3vtz_A           12 FTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVN-----VSDHFKIDVTNEEEVKEAVEKTTKKYGRIDILV   86 (269)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CTT-----SSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhccC-----ceeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            56889999997 999999999999999999999988654311     122 22355555444332       24899999


Q ss_pred             EcCCC
Q 027668          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        87 ~nAg~   91 (269)
T 3vtz_A           87 NNAGI   91 (269)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99986

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=97.70  E-value=0.00024  Score=54.57  Aligned_cols=97  Identities=14%  Similarity=0.134  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEEEc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      .++++++||-+|+|. |..+..+++..|++|+.++.+++..+.+.+.   .|..  ..+...+..   ++.+.||+|+..
T Consensus        69 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~fD~v~~~  144 (302)
T 3hem_A           69 NLEPGMTLLDIGCGW-GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDEPVDRIVSL  144 (302)
T ss_dssp             CCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCCCCSEEEEE
T ss_pred             CCCCcCEEEEeeccC-cHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHH---HcCCCccEEEEc
Confidence            468999999999985 8888999998899999999998876665433   3321  111122222   224589999864


Q ss_pred             CCCc---------------ccHHHHHhccccCCEEEEecCC
Q 027668          114 VSAV---------------HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       114 ~g~~---------------~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ....               ..+..+.+.|++||++++....
T Consensus       145 ~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  185 (302)
T 3hem_A          145 GAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT  185 (302)
T ss_dssp             SCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEE
T ss_pred             chHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            3221               2356788899999999987654

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.69  E-value=0.00016  Score=54.90  Aligned_cols=72  Identities=25%  Similarity=0.334  Sum_probs=55.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE---ecCCCHHHHHHhc------CCccEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAAM------GTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~~------~~~d~vi  111 (220)
                      .++++||.|+ |++|.++++.+...|++|++++++.++.+++.++++....   .|-.+.+.++++.      +++|++|
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~lv  108 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAV  108 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeEE
Confidence            5688999997 9999999999999999999999999888888777765322   3445554443322      3789999


Q ss_pred             Ec
Q 027668          112 DT  113 (220)
Q Consensus       112 d~  113 (220)
                      .+
T Consensus       109 ~~  110 (281)
T 3ppi_A          109 VA  110 (281)
T ss_dssp             EC
T ss_pred             Ec
Confidence            88

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.69  E-value=0.00034  Score=52.26  Aligned_cols=72  Identities=17%  Similarity=0.194  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cC-CCHHHHHHhcCCccEEEEcCCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VS-RDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~-~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      ..++++||.|+ |.+|..+++.+...|++|++++++++..    ++++....+ |- .+.+.+.+...++|++|+++|.
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~iD~lv~~Ag~   91 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL----KRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGG   91 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH----HhhCCeEEEeeHHHHHHHHHHHhcCCCEEEECCCC
Confidence            46789999997 9999999999999999999999986332    344532222 22 1222222223389999999985

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.68  E-value=0.00021  Score=53.18  Aligned_cols=76  Identities=17%  Similarity=0.184  Sum_probs=55.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.+++   +...   ..|-.+.+.++++       .+++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999997 99999999999999999999999987766554433   4322   2344555444332       2379


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++|+++|..
T Consensus        84 d~li~~Ag~~   93 (247)
T 3lyl_A           84 DILVNNAGIT   93 (247)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999999863

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.68  E-value=0.00013  Score=55.41  Aligned_cols=94  Identities=13%  Similarity=0.171  Sum_probs=65.9

Q ss_pred             EEEEEcC-chHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~~--  118 (220)
                      +|||.|+ |.+|..+++.+...  |.+|+++++++++...+ ...+...+ .|..+.+.+.+...++|+||.+++...  
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l-~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~   80 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTL-ADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDN   80 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHH-HHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCSCH
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHH-hhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCcCc
Confidence            5899997 99999999988887  89999999987765554 23455433 355667777777789999999988521  


Q ss_pred             -----cHHHHHhccccC--CEEEEecCC
Q 027668          119 -----PLMPLIGLLKSQ--GKLVLLGAP  139 (220)
Q Consensus       119 -----~~~~~~~~l~~~--g~iv~~g~~  139 (220)
                           .....++.++..  ++++.++..
T Consensus        81 ~~n~~~~~~l~~a~~~~~~~~~v~~Ss~  108 (287)
T 2jl1_A           81 TLLIVQHANVVKAARDAGVKHIAYTGYA  108 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred             hHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence                 112233444333  478877654

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.68  E-value=0.0002  Score=54.01  Aligned_cols=71  Identities=15%  Similarity=0.178  Sum_probs=50.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHH-------HhcCCccEEEEc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ-------AAMGTMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-------~~~~~~d~vid~  113 (220)
                      .|+++||.|+ +++|+++++.+...|++|+++++++++.  +.+.+  ....|-.+.+.++       +..+++|+++++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~--~~~~~--~~~~Dv~~~~~v~~~~~~~~~~~G~iDilVnn   85 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG--LPEEL--FVEADLTTKEGCAIVAEATRQRLGGVDVIVHM   85 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT--SCTTT--EEECCTTSHHHHHHHHHHHHHHTSSCSEEEEC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC--CCcEE--EEEcCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6899999997 8999999999999999999999875421  10111  1223445544333       223589999999


Q ss_pred             CCC
Q 027668          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        86 AG~   88 (261)
T 4h15_A           86 LGG   88 (261)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            874

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.68  E-value=0.00019  Score=54.44  Aligned_cols=94  Identities=15%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             EEEEEcC-chHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCc---
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAV---  117 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~---  117 (220)
                      +|||.|+ |.+|..+++.+...  |++|+++++++++...+ ...+...+ .|..+.+.+.+...++|+||.+++..   
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~~~~   79 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQAL-AAQGITVRQADYGDEAALTSALQGVEKLLLISSSEVGQ   79 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHH-HHTTCEEEECCTTCHHHHHHHTTTCSEEEECC------
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhh-hcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCCchH
Confidence            3789997 99999999988887  89999999987765544 23455433 35566777777778999999998752   


Q ss_pred             --ccHHHHHhcccc-C-CEEEEecCC
Q 027668          118 --HPLMPLIGLLKS-Q-GKLVLLGAP  139 (220)
Q Consensus       118 --~~~~~~~~~l~~-~-g~iv~~g~~  139 (220)
                        ......++.++. + ++++.++..
T Consensus        80 ~~~~~~~l~~a~~~~~~~~~v~~Ss~  105 (286)
T 2zcu_A           80 RAPQHRNVINAAKAAGVKFIAYTSLL  105 (286)
T ss_dssp             --CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCC
Confidence              122334444433 2 578877654

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.67  E-value=0.00014  Score=52.31  Aligned_cols=60  Identities=17%  Similarity=0.297  Sum_probs=45.6

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc---CCccEEEEcCCC
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM---GTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~---~~~d~vid~~g~  116 (220)
                      ++||.|+ |.+|..+++.+. .|++|++++++.+           ....|-.+.+.+++..   +++|++|.++|.
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~   68 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------DVTVDITNIDSIKKMYEQVGKVDAIVSATGS   68 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------SEECCTTCHHHHHHHHHHHCCEEEEEECCCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------ceeeecCCHHHHHHHHHHhCCCCEEEECCCC
Confidence            7999997 999999999888 9999999998754           1233555555554433   368999999884

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.67  E-value=0.00011  Score=57.21  Aligned_cols=78  Identities=22%  Similarity=0.134  Sum_probs=56.1

Q ss_pred             CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----C--CcEE--ecCCCHHHHHHhcCCccEE
Q 027668           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----G--ADSF--LVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g--~~~v--~~~~~~~~~~~~~~~~d~v  110 (220)
                      ..++.+|||.|+ |.+|..+++.+...|++|++++++.++.+.+.+.+    +  ...+  .|..+.+.+.++..++|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            356789999997 99999999999999999999999876654443221    2  2322  2444445555555689999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      |.+++..
T Consensus        88 ih~A~~~   94 (342)
T 1y1p_A           88 AHIASVV   94 (342)
T ss_dssp             EECCCCC
T ss_pred             EEeCCCC
Confidence            9998754

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.67  E-value=0.00016  Score=53.97  Aligned_cols=73  Identities=21%  Similarity=0.299  Sum_probs=54.9

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHhc-------CCccEEEE
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAAM-------GTMDGIID  112 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~~-------~~~d~vid  112 (220)
                      +++||.|+ |++|.++++.+...|++|++++++.++.+.+.++++...   ..|-.+.+.++++.       +++|++|+
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            36788887 999999999999999999999999887777766665321   23555555554432       37999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        81 nAg~   84 (248)
T 3asu_A           81 NAGL   84 (248)
T ss_dssp             CCCC
T ss_pred             CCCc
Confidence            9884

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.67  E-value=0.00014  Score=55.30  Aligned_cols=75  Identities=19%  Similarity=0.321  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC---cE---EecCCCHHHHHHh-------c
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA---DS---FLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~---~~---v~~~~~~~~~~~~-------~  104 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+++   +.   ..   ..|-.+.+.++++       .
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            4688999997 99999999999999999999999987766554433   22   21   2344555444332       2


Q ss_pred             CCccEEEEcCCC
Q 027668          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~vid~~g~  116 (220)
                      +++|++|+++|.
T Consensus        85 g~iD~lv~nAg~   96 (280)
T 1xkq_A           85 GKIDVLVNNAGA   96 (280)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.67  E-value=0.00014  Score=54.19  Aligned_cols=71  Identities=21%  Similarity=0.226  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHh-------cCCccEEEEc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA-------MGTMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~vid~  113 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.   +  ...|-.+.+.+++.       .+++|++|++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~---~--~~~D~~~~~~~~~~~~~~~~~~g~id~lv~~   88 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF---G--VEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   88 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTSE---E--EECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHhc---C--eeccCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            5688999997 99999999999999999999999876543321   1  33455555444332       2478999999


Q ss_pred             CCCc
Q 027668          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      +|..
T Consensus        89 Ag~~   92 (247)
T 1uzm_A           89 AGLS   92 (247)
T ss_dssp             CSCC
T ss_pred             CCCC
Confidence            8853

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.67  E-value=0.0003  Score=52.78  Aligned_cols=74  Identities=18%  Similarity=0.263  Sum_probs=52.9

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc--HHHHHHHc---CCcE---EecCCCHHHHHHh-------cCC
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK--KSEAVERL---GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~--~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      ++++||.|+ |.+|.++++.+...|++|++++++.++  .+.+.+++   +...   ..|-.+.+.++++       .++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            578999997 999999999999899999999998766  45443333   3321   1344555444332       248


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus        82 iD~lv~nAg~   91 (258)
T 3a28_C           82 FDVLVNNAGI   91 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999885

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.66  E-value=4.9e-05  Score=56.35  Aligned_cols=98  Identities=19%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .+.+|||.|+ |.+|..+++.+...|+  +|+++++++++..... .-+...+ .|..+.+.+.+...++|++|+++|..
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-YKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-GGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc-cCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            3578999997 9999999999999999  9999999876543221 1123222 23344455555566899999999864


Q ss_pred             cc--------------HHHHHhcccc--CCEEEEecCCC
Q 027668          118 HP--------------LMPLIGLLKS--QGKLVLLGAPE  140 (220)
Q Consensus       118 ~~--------------~~~~~~~l~~--~g~iv~~g~~~  140 (220)
                      ..              ....++.+++  .++++.++...
T Consensus        96 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~  134 (242)
T 2bka_A           96 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG  134 (242)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             cccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCc
Confidence            21              1123333332  36899887654

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.66  E-value=0.00014  Score=55.88  Aligned_cols=75  Identities=19%  Similarity=0.336  Sum_probs=54.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC---cE---EecCCCHHHHHHh-------c
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA---DS---FLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~---~~---v~~~~~~~~~~~~-------~  104 (220)
                      .++++||.|+ |.+|.++++.+...|++|++++++.++.+.+.+++   +.   ..   ..|-.+.+.++++       .
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            5688999997 99999999999999999999999987665554433   32   21   2344555444332       2


Q ss_pred             CCccEEEEcCCC
Q 027668          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~vid~~g~  116 (220)
                      +++|++|+++|.
T Consensus       105 g~iD~lvnnAG~  116 (297)
T 1xhl_A          105 GKIDILVNNAGA  116 (297)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            489999999874

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.66  E-value=0.0002  Score=54.28  Aligned_cols=75  Identities=19%  Similarity=0.139  Sum_probs=53.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHHHc----CCcE---EecCCCH----HHHHHh-----
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERL----GADS---FLVSRDQ----DEMQAA-----  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~~~----g~~~---v~~~~~~----~~~~~~-----  103 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++ ++++.+.+.+++    +...   ..|-.+.    +.++++     
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            4678999997 99999999999999999999999 776655554443    4321   1244444    444332     


Q ss_pred             --cCCccEEEEcCCC
Q 027668          104 --MGTMDGIIDTVSA  116 (220)
Q Consensus       104 --~~~~d~vid~~g~  116 (220)
                        .+++|++|+++|.
T Consensus        90 ~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           90 RAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCC
Confidence              2489999999984

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.66  E-value=0.00033  Score=52.39  Aligned_cols=74  Identities=14%  Similarity=0.040  Sum_probs=50.8

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH--HcCCc-EEecCCCHH-HHH---HhcCCccEEEEcCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE--RLGAD-SFLVSRDQD-EMQ---AAMGTMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~--~~g~~-~v~~~~~~~-~~~---~~~~~~d~vid~~g  115 (220)
                      +++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+  ..|.. ..++..+.+ .++   +..+++|++|+++|
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~nAg   81 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI   81 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            46889997 999999999999999999999998776555422  22432 222333322 222   22358999999988


Q ss_pred             Cc
Q 027668          116 AV  117 (220)
Q Consensus       116 ~~  117 (220)
                      ..
T Consensus        82 ~~   83 (254)
T 1zmt_A           82 FA   83 (254)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.66  E-value=0.00023  Score=56.72  Aligned_cols=90  Identities=16%  Similarity=0.146  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|.++.|+|.|.+|..+++.++.+|++|++.+++..+.+.. +.+|+..+   .+   +.++....|+|+.++...+   
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~-~~~G~~~~---~~---l~ell~~aDvV~l~~Plt~~t~  262 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE-KELNLTWH---AT---REDMYPVCDVVTLNCPLHPETE  262 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH-HHHTCEEC---SS---HHHHGGGCSEEEECSCCCTTTT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhH-hhcCceec---CC---HHHHHhcCCEEEEecCCchHHH
Confidence            67899999999999999999999999999999876554433 56676532   11   3344557899998876431   


Q ss_pred             -cH-HHHHhccccCCEEEEecC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~  138 (220)
                       .+ ...+..|+++..++.++.
T Consensus       263 ~li~~~~l~~mk~gailIN~aR  284 (393)
T 2nac_A          263 HMINDETLKLFKRGAYIVNTAR  284 (393)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSC
T ss_pred             HHhhHHHHhhCCCCCEEEECCC
Confidence             23 356678888888888774

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.65  E-value=0.00037  Score=52.65  Aligned_cols=77  Identities=19%  Similarity=0.234  Sum_probs=51.1

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEe-CCcccHHHHHH---HcCC--cE-EecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVE---RLGA--DS-FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~---~~g~--~~-v~~~~~~~~~~~~-------~~  105 (220)
                      ..++++||.|+ |++|..+++.+...|++|++++ +..+..+...+   ..+.  .. ..|-.+.+.++++       .+
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            35678999997 9999999999999999999998 44443333322   2232  21 2355555444332       24


Q ss_pred             CccEEEEcCCCc
Q 027668          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~vid~~g~~  117 (220)
                      ++|++|+++|..
T Consensus       103 ~id~li~nAg~~  114 (269)
T 3gk3_A          103 KVDVLINNAGIT  114 (269)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCcC
Confidence            899999999853

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.65  E-value=0.00014  Score=54.11  Aligned_cols=74  Identities=16%  Similarity=0.203  Sum_probs=54.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-CcE-EecCCCHHHHHHh---cCCccEEEEcCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADS-FLVSRDQDEMQAA---MGTMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~~~-v~~~~~~~~~~~~---~~~~d~vid~~g  115 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.+. +++ ... ..|-.+.+.+++.   .+++|++|+++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~Ag   83 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG   83 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECCc
Confidence            4688999997 99999999999999999999999877655543 332 221 2355555555443   358999999998


Q ss_pred             C
Q 027668          116 A  116 (220)
Q Consensus       116 ~  116 (220)
                      .
T Consensus        84 ~   84 (246)
T 2ag5_A           84 F   84 (246)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=97.64  E-value=0.00018  Score=53.97  Aligned_cols=98  Identities=18%  Similarity=0.134  Sum_probs=66.5

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC---cEEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---DSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      .++++.+||-+|+| .|..+..+++..|++|+.++.+++..+.+.+....   -.++.. +........+.||+|+....
T Consensus        52 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-d~~~~~~~~~~fD~v~~~~~  129 (266)
T 3ujc_A           52 ELNENSKVLDIGSG-LGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEAN-DILTKEFPENNFDLIYSRDA  129 (266)
T ss_dssp             CCCTTCEEEEETCT-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEEC-CTTTCCCCTTCEEEEEEESC
T ss_pred             CCCCCCEEEEECCC-CCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEC-ccccCCCCCCcEEEEeHHHH
Confidence            36889999999998 58888888887789999999999887777544422   111111 11111001237999997644


Q ss_pred             Ccc--------cHHHHHhccccCCEEEEecC
Q 027668          116 AVH--------PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       116 ~~~--------~~~~~~~~l~~~g~iv~~g~  138 (220)
                      -..        .+..+.+.|++||.+++...
T Consensus       130 l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          130 ILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             GGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            332        25667889999999998754

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=97.64  E-value=0.00014  Score=51.57  Aligned_cols=97  Identities=13%  Similarity=0.191  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC--cEEecCCCHHHHHHhc-CCccEEEEc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA--DSFLVSRDQDEMQAAM-GTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~--~~v~~~~~~~~~~~~~-~~~d~vid~  113 (220)
                      ++++++||-+|+|. |..+..+++. +.+|+.++.+++..+.+.+.+   |.  -.++. .+.+.+.... +.||+|+-.
T Consensus        20 ~~~~~~vLDiGcG~-G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~~~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           20 LDDESIVVDATMGN-GNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELIL-DGHENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             CCTTCEEEESCCTT-SHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCCEEEEEcCCC-CHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-CcHHHHHhhccCCcCEEEEe
Confidence            68899999999875 8788888877 889999999988766654432   32  12232 2322222222 379999865


Q ss_pred             CCCc---------------ccHHHHHhccccCCEEEEecCC
Q 027668          114 VSAV---------------HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       114 ~g~~---------------~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      .+.-               ..+..+.+.|++||+++.+...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  137 (185)
T 3mti_A           97 LGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY  137 (185)
T ss_dssp             EC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred             CCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence            3321               1236677899999999887543

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.64  E-value=0.00023  Score=54.02  Aligned_cols=98  Identities=22%  Similarity=0.237  Sum_probs=67.1

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHHc----C--C-cEEecCCCHHHHHHh-cCCcc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERL----G--A-DSFLVSRDQDEMQAA-MGTMD  108 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~----g--~-~~v~~~~~~~~~~~~-~~~~d  108 (220)
                      .+.++++||.+|+| .|..+..+++..  +.+++.++.+++..+.+.+.+    |  . ...+...+.... .+ .+.||
T Consensus        96 ~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~-~~~~~~~D  173 (280)
T 1i9g_A           96 DIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSVD  173 (280)
T ss_dssp             TCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCEE
T ss_pred             CCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc-CCCCCcee
Confidence            37899999999998 688888888875  459999999988766664432    4  2 111212221111 11 13799


Q ss_pred             EEEEcCCCc-ccHHHHHhccccCCEEEEecC
Q 027668          109 GIIDTVSAV-HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       109 ~vid~~g~~-~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      +|+.....+ ..+..+.+.|+++|.++.+..
T Consensus       174 ~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          174 RAVLDMLAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             EEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             EEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            999766554 467788899999999988643

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.63  E-value=0.00043  Score=51.43  Aligned_cols=76  Identities=21%  Similarity=0.382  Sum_probs=54.4

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---C--CcEE--ecC--CCHHHHHH-------h
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---G--ADSF--LVS--RDQDEMQA-------A  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g--~~~v--~~~--~~~~~~~~-------~  103 (220)
                      -.++++||.|+ |++|..+++.+...|++|+++++++++.+++.+++   +  ...+  .+.  .+.+.+++       .
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            35789999997 99999999999999999999999988766654433   2  1112  232  34433332       2


Q ss_pred             cCCccEEEEcCCC
Q 027668          104 MGTMDGIIDTVSA  116 (220)
Q Consensus       104 ~~~~d~vid~~g~  116 (220)
                      .+++|++|+++|.
T Consensus        92 ~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 FGRLDGLLHNASI  104 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            2489999999885

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.63  E-value=0.00037  Score=51.63  Aligned_cols=71  Identities=21%  Similarity=0.319  Sum_probs=49.8

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCC--H-HHHH---HhcCCccEEEEcC
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRD--Q-DEMQ---AAMGTMDGIIDTV  114 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~--~-~~~~---~~~~~~d~vid~~  114 (220)
                      ++++||.|+ |.+|.++++.+...|++|+++++++++   +.+++|...+ .|-.+  . ..++   +..+++|++|+++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~A   78 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAA   78 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEEECC
Confidence            578999997 999999999999999999999998765   2244454322 23332  1 1122   2235899999998


Q ss_pred             CC
Q 027668          115 SA  116 (220)
Q Consensus       115 g~  116 (220)
                      |.
T Consensus        79 g~   80 (239)
T 2ekp_A           79 AV   80 (239)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=97.63  E-value=0.0001  Score=54.25  Aligned_cols=95  Identities=16%  Similarity=0.157  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHh-cCCccEEEEcCCCcc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA-MGTMDGIIDTVSAVH  118 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-~~~~d~vid~~g~~~  118 (220)
                      +.++.+||-+|+|. |..+..+++. |.+|+.++.++...+.+.+......++..+-.+..... .+.||+|+.......
T Consensus        46 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~~~~~  123 (226)
T 3m33_A           46 LTPQTRVLEAGCGH-GPDAARFGPQ-AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRRGPTS  123 (226)
T ss_dssp             CCTTCEEEEESCTT-SHHHHHHGGG-SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEESCCSG
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHc-CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCCCHHH
Confidence            47889999999875 7777777776 88999999999887777555332222222211111111 247999998766666


Q ss_pred             cHHHHHhccccCCEEEEe
Q 027668          119 PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       119 ~~~~~~~~l~~~g~iv~~  136 (220)
                      .+..+.+.|+++|.++..
T Consensus       124 ~l~~~~~~LkpgG~l~~~  141 (226)
T 3m33_A          124 VILRLPELAAPDAHFLYV  141 (226)
T ss_dssp             GGGGHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHcCCCcEEEEe
Confidence            788899999999999933

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.63  E-value=0.00032  Score=51.58  Aligned_cols=97  Identities=18%  Similarity=0.091  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC---cEEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---DSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      .+.++++||-+|+|. |..+..+++.. .+++.++.+++..+.+.+.+..   -.++..+-.+.. ...+.||+|+....
T Consensus        67 ~~~~~~~vLdiG~G~-G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~  143 (231)
T 1vbf_A           67 DLHKGQKVLEIGTGI-GYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWAT  143 (231)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSB
T ss_pred             CCCCCCEEEEEcCCC-CHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc-ccCCCccEEEECCc
Confidence            468899999999986 88888888764 8999999998877776554431   122222211111 11247999997766


Q ss_pred             CcccHHHHHhccccCCEEEEecC
Q 027668          116 AVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      .......+.+.|+++|+++..-.
T Consensus       144 ~~~~~~~~~~~L~pgG~l~~~~~  166 (231)
T 1vbf_A          144 APTLLCKPYEQLKEGGIMILPIG  166 (231)
T ss_dssp             BSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHcCCCcEEEEEEc
Confidence            55556788899999999987754

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.62  E-value=0.00019  Score=56.60  Aligned_cols=70  Identities=26%  Similarity=0.285  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      -+|++|+|+|.|.+|..+++.++..|++|++.+.+.++.+.+.+++|++.+ +.   +.+  +....|+++-|+..
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~---~~l--l~~~~DIvip~a~~  240 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-AP---NAI--YGVTCDIFAPCALG  240 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CG---GGT--TTCCCSEEEECSCS
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-Ch---HHH--hccCCcEeeccchH
Confidence            578999999999999999999999999999999888877777777786543 11   111  11256777766544

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.62  E-value=0.00048  Score=53.89  Aligned_cols=75  Identities=11%  Similarity=0.049  Sum_probs=55.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---H-------cCCcEE-ecCCCHHHHHHhcCCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---R-------LGADSF-LVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~-------~g~~~v-~~~~~~~~~~~~~~~~d~  109 (220)
                      .+.+|||.|+ |.+|..+++.+...|.+|+++++..........   .       -+...+ .|..+.+.+.+...++|+
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  103 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH  103 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence            4579999997 999999999999999999999997553222211   1       123322 355567777777789999


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      ||.+++.
T Consensus       104 Vih~A~~  110 (351)
T 3ruf_A          104 VLHQAAL  110 (351)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9999986

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=97.62  E-value=0.00022  Score=56.10  Aligned_cols=89  Identities=19%  Similarity=0.254  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..+++.++..|++|++.+++.. .+.+ ...|+..+   .+   +.++....|+|+-++....   
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~-~~~g~~~~---~~---l~ell~~aDiV~l~~Plt~~t~  230 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS-KERA-RADGFAVA---ES---KDALFEQSDVLSVHLRLNDETR  230 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH-HHHH-HHTTCEEC---SS---HHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC-HHHH-HhcCceEe---CC---HHHHHhhCCEEEEeccCcHHHH
Confidence            578999999999999999999999999999988753 2333 46676532   12   2233346899999876432   


Q ss_pred             -c-HHHHHhccccCCEEEEecC
Q 027668          119 -P-LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~-~~~~~~~l~~~g~iv~~g~  138 (220)
                       . -...+..|++++.++.++.
T Consensus       231 ~li~~~~l~~mk~gailIN~aR  252 (352)
T 3gg9_A          231 SIITVADLTRMKPTALFVNTSR  252 (352)
T ss_dssp             TCBCHHHHTTSCTTCEEEECSC
T ss_pred             HhhCHHHHhhCCCCcEEEECCC
Confidence             1 2356788999999999884

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.61  E-value=0.00014  Score=53.90  Aligned_cols=98  Identities=16%  Similarity=0.111  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHH---cCCc---EEecCCCHHHHHHh--------
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAA--------  103 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~--------  103 (220)
                      ..++++||-+|+| .|..+..+++..  +.+++.++.+++..+.+.+.   .|..   .++..+..+...+.        
T Consensus        58 ~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~  136 (239)
T 2hnk_A           58 ISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPS  136 (239)
T ss_dssp             HHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred             hhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence            4678899999998 488889999987  56999999998876665443   3432   22222222323322        


Q ss_pred             -------c-CCccEEEEcCCCc---ccHHHHHhccccCCEEEEecC
Q 027668          104 -------M-GTMDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       104 -------~-~~~d~vid~~g~~---~~~~~~~~~l~~~g~iv~~g~  138 (220)
                             . +.||+||...+..   ..+..+.+.|++||.++....
T Consensus       137 ~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~  182 (239)
T 2hnk_A          137 WASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNV  182 (239)
T ss_dssp             GGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             ccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence                   1 5799999776544   235678889999999998643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.61  E-value=0.00011  Score=55.14  Aligned_cols=94  Identities=24%  Similarity=0.310  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc-EEecCCCHHHHHHh-cCCccEEEEcC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD-SFLVSRDQDEMQAA-MGTMDGIIDTV  114 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~-~~~~d~vid~~  114 (220)
                      ++++++||-+|+|+ |..++.+++ .|++|+.++.++...+.+.+.   .+.. .++.. +...  .+ .+.||+|+...
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~-d~~~--~~~~~~fD~Vv~n~  192 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEG-SLEA--ALPFGPFDLLVANL  192 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEES-CHHH--HGGGCCEEEEEEEC
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEEC-Chhh--cCcCCCCCEEEECC
Confidence            57899999999976 777777666 577999999998876666443   3432 22222 2111  12 24799999654


Q ss_pred             CCc---ccHHHHHhccccCCEEEEecC
Q 027668          115 SAV---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       115 g~~---~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ...   ..+..+.+.|+++|++++.+.
T Consensus       193 ~~~~~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          193 YAELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHHHHcCCCCEEEEEee
Confidence            221   235567788999999998654

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.61  E-value=0.00063  Score=51.40  Aligned_cols=76  Identities=20%  Similarity=0.298  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEE-eCCcccHHHHHH---HcCCcE---EecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~-~~~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~  105 (220)
                      .+++++||.|+ |++|.++++.+...|++|+++ .++.+..+.+.+   +.+...   ..|-.+.+.++++       .+
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  103 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQFG  103 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            56789999997 999999999999999999777 556555444433   234322   1244454444332       24


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus       104 ~id~li~nAg~  114 (272)
T 4e3z_A          104 RLDGLVNNAGI  114 (272)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            89999999885

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.61  E-value=0.00034  Score=53.44  Aligned_cols=88  Identities=19%  Similarity=0.220  Sum_probs=62.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+. +.|....   .+.   .+...+.|+||.|+..+..+...
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~---~~~---~~~~~~aDvvi~~vp~~~~~~~v   74 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELA-ALGAERA---ATP---CEVVESCPVTFAMLADPAAAEEV   74 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHH-HTTCEEC---SSH---HHHHHHCSEEEECCSSHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-HCCCeec---CCH---HHHHhcCCEEEEEcCCHHHHHHH
Confidence            4789999999999999999999999999999998887774 4565321   121   12223579999999865334444


Q ss_pred             H-------hccccCCEEEEecC
Q 027668          124 I-------GLLKSQGKLVLLGA  138 (220)
Q Consensus       124 ~-------~~l~~~g~iv~~g~  138 (220)
                      +       ..++++..++..+.
T Consensus        75 ~~~~~~l~~~l~~~~~vi~~st   96 (287)
T 3pef_A           75 CFGKHGVLEGIGEGRGYVDMST   96 (287)
T ss_dssp             HHSTTCHHHHCCTTCEEEECSC
T ss_pred             HcCcchHhhcCCCCCEEEeCCC
Confidence            4       45566666666543

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=97.61  E-value=9.1e-05  Score=55.98  Aligned_cols=72  Identities=22%  Similarity=0.301  Sum_probs=49.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHH-------HhcCCccEEEE
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ-------AAMGTMDGIID  112 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~-------~~~~~~d~vid  112 (220)
                      -.|+++||.|+ |++|.++++.+...|++|++++++.+..... ..+    ..|-.+.+.+.       +..+++|++|+
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~-~~~----~~Dv~~~~~~~~~~~~~~~~~g~iD~lvn  100 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD-LHL----PGDLREAAYADGLPGAVAAGLGRLDIVVN  100 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCS-EEC----CCCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhh-hcc----CcCCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            35789999997 9999999999999999999999876543221 011    12333433332       22358999999


Q ss_pred             cCCCc
Q 027668          113 TVSAV  117 (220)
Q Consensus       113 ~~g~~  117 (220)
                      ++|..
T Consensus       101 nAg~~  105 (266)
T 3uxy_A          101 NAGVI  105 (266)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            99863

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.61  E-value=0.00025  Score=54.36  Aligned_cols=75  Identities=20%  Similarity=0.282  Sum_probs=54.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCcE---EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+++    +...   ..|-.+.+.+++.       .+.
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  104 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            5689999997 99999999999999999999999987665554433    4321   2344454444322       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|+++|.
T Consensus       105 id~li~~Ag~  114 (302)
T 1w6u_A          105 PNIVINNAAG  114 (302)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999984

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.61  E-value=0.00029  Score=52.71  Aligned_cols=77  Identities=21%  Similarity=0.247  Sum_probs=50.7

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEe-CCcccHHHHHH---HcCCc-E--EecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVE---RLGAD-S--FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~---~~g~~-~--v~~~~~~~~~~~~-------~~  105 (220)
                      .+++++||.|+ |++|..+++.+...|++|++++ ++.++.+...+   ..+.. .  ..|-.+.+.+++.       .+
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   90 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEVG   90 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            56788999997 9999999999999999999887 44444433322   33432 1  2244454433322       24


Q ss_pred             CccEEEEcCCCc
Q 027668          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~vid~~g~~  117 (220)
                      ++|++|+++|..
T Consensus        91 ~id~lv~~Ag~~  102 (256)
T 3ezl_A           91 EIDVLVNNAGIT  102 (256)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            899999998853

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=97.61  E-value=0.00017  Score=55.89  Aligned_cols=97  Identities=14%  Similarity=0.224  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc--EEecCCCHHHHHHhcCCccEEEEc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~--~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      .+.++++||-+|+|. |..+..+++..|++|+.++.+++..+.+.+.+   |..  ..+...+..   +..+.||+|+..
T Consensus        87 ~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~~~~fD~v~~~  162 (318)
T 2fk8_A           87 DLKPGMTLLDIGCGW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWE---DFAEPVDRIVSI  162 (318)
T ss_dssp             CCCTTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGG---GCCCCCSEEEEE
T ss_pred             CCCCcCEEEEEcccc-hHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChH---HCCCCcCEEEEe
Confidence            368899999999986 88888888887999999999988766664432   321  111112211   122579999876


Q ss_pred             -----CCCc---ccHHHHHhccccCCEEEEecCC
Q 027668          114 -----VSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       114 -----~g~~---~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                           .+..   ..+..+.+.|++||++++....
T Consensus       163 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          163 EAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             SCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence                 3221   2356677899999999876543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.60  E-value=5.5e-05  Score=57.45  Aligned_cols=102  Identities=14%  Similarity=0.033  Sum_probs=63.9

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~  109 (220)
                      ..+++....--.+++++|+|+|++|.+++..+...|+ +|+++.++.++.+.+.+  +.. ..   ..+...+...++|+
T Consensus       105 ~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~--~~~-~~---~~~~~~~~~~~aDi  178 (277)
T 3don_A          105 VNGLKQIYEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL--NIN-KI---NLSHAESHLDEFDI  178 (277)
T ss_dssp             HHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS--CCE-EE---CHHHHHHTGGGCSE
T ss_pred             HHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH--hcc-cc---cHhhHHHHhcCCCE
Confidence            3445444322357899999999999999999999999 89999999877655432  111 11   22334444458999


Q ss_pred             EEEcCCCcc--cHH--HHHhccccCCEEEEecC
Q 027668          110 IIDTVSAVH--PLM--PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       110 vid~~g~~~--~~~--~~~~~l~~~g~iv~~g~  138 (220)
                      ||+|++...  ...  .....++++..++.+..
T Consensus       179 VInaTp~Gm~~~~~~~l~~~~l~~~~~V~D~vY  211 (277)
T 3don_A          179 IINTTPAGMNGNTDSVISLNRLASHTLVSDIVY  211 (277)
T ss_dssp             EEECCC-------CCSSCCTTCCSSCEEEESCC
T ss_pred             EEECccCCCCCCCcCCCCHHHcCCCCEEEEecC
Confidence            999986531  000  01334666666665544

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.60  E-value=0.00053  Score=53.24  Aligned_cols=90  Identities=14%  Similarity=0.238  Sum_probs=64.6

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      ..+|.|+|.|.+|...++.+...|.+|++.++++++.+.+. +.|....   .+   ..+.....|+||.|+..+..+..
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~---~~---~~e~~~~aDvVi~~vp~~~~~~~  103 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLA-ALGATIH---EQ---ARAAARDADIVVSMLENGAVVQD  103 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-TTTCEEE---SS---HHHHHTTCSEEEECCSSHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHH-HCCCEee---CC---HHHHHhcCCEEEEECCCHHHHHH
Confidence            35899999999999999999999999999999988877774 4465432   11   22334578999999987543444


Q ss_pred             HH------hccccCCEEEEecCC
Q 027668          123 LI------GLLKSQGKLVLLGAP  139 (220)
Q Consensus       123 ~~------~~l~~~g~iv~~g~~  139 (220)
                      .+      ..++++..++..+..
T Consensus       104 v~~~~~~~~~l~~~~~vi~~st~  126 (320)
T 4dll_A          104 VLFAQGVAAAMKPGSLFLDMASI  126 (320)
T ss_dssp             HHTTTCHHHHCCTTCEEEECSCC
T ss_pred             HHcchhHHhhCCCCCEEEecCCC
Confidence            43      345667677766543

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=97.60  E-value=0.00028  Score=59.74  Aligned_cols=76  Identities=20%  Similarity=0.253  Sum_probs=48.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC---------CcccHHHHHH---HcCCcEEecCCCHHHHHHhc----
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST---------SPSKKSEAVE---RLGADSFLVSRDQDEMQAAM----  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~---------~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~----  104 (220)
                      .|+++||.|+ |++|.++++.+...|++|+++++         +.++.+.+.+   ..+...+.+..+.+.++++.    
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~~   97 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAI   97 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC---
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence            5788999997 89999999999999999999876         4444444333   34555566666654443322    


Q ss_pred             ---CCccEEEEcCCCc
Q 027668          105 ---GTMDGIIDTVSAV  117 (220)
Q Consensus       105 ---~~~d~vid~~g~~  117 (220)
                         +++|++|+++|..
T Consensus        98 ~~~g~iDiLVnnAGi~  113 (613)
T 3oml_A           98 KAFGRVDILVNNAGIL  113 (613)
T ss_dssp             -------CEECCCCCC
T ss_pred             HHCCCCcEEEECCCCC
Confidence               3799999999863

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.60  E-value=0.00017  Score=55.39  Aligned_cols=76  Identities=21%  Similarity=0.281  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc--------CCcE---EecCCCHHHHHHh-----
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--------GADS---FLVSRDQDEMQAA-----  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~--------g~~~---v~~~~~~~~~~~~-----  103 (220)
                      -.++++||.|+ |.+|..+++.+...|++|++++++.++.+.+.+++        +...   ..|-.+.+.++++     
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            35689999997 99999999999999999999999987665544432        3221   1344455444332     


Q ss_pred             --cCCccEEEEcCCC
Q 027668          104 --MGTMDGIIDTVSA  116 (220)
Q Consensus       104 --~~~~d~vid~~g~  116 (220)
                        .+++|++|+++|.
T Consensus        96 ~~~g~id~li~~Ag~  110 (303)
T 1yxm_A           96 DTFGKINFLVNNGGG  110 (303)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence              2479999999984

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.60  E-value=0.00061  Score=51.65  Aligned_cols=96  Identities=20%  Similarity=0.153  Sum_probs=67.3

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHH---cCC--cEEecCCCHHHHHHhc-CCccEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGA--DSFLVSRDQDEMQAAM-GTMDGI  110 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~---~g~--~~v~~~~~~~~~~~~~-~~~d~v  110 (220)
                      .+.++++||-+|+|+ |..+..+++..  +.+++.++.+++..+.+.+.   .|.  ...+...+....  +. +.||+|
T Consensus       109 ~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~V  185 (277)
T 1o54_A          109 DVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FDEKDVDAL  185 (277)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CSCCSEEEE
T ss_pred             CCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--ccCCccCEE
Confidence            478999999999987 88888899886  45999999998876665443   243  111212221111  22 369999


Q ss_pred             EEcCCCc-ccHHHHHhccccCCEEEEec
Q 027668          111 IDTVSAV-HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 id~~g~~-~~~~~~~~~l~~~g~iv~~g  137 (220)
                      +.....+ ..+..+.+.|+++|.++...
T Consensus       186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          186 FLDVPDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             EECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             EECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            9766554 46778899999999998864

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.59  E-value=0.00035  Score=54.60  Aligned_cols=89  Identities=19%  Similarity=0.314  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--  118 (220)
                      -.|.+|.|+|.|.+|..+++.++..|.+|++.+++.++ +.+ +++|...    .+.   .+.....|+|+.++....  
T Consensus       148 l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~----~~l---~~~l~~aDvVil~vp~~~~t  218 (334)
T 2dbq_A          148 VYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVE-RELNAEF----KPL---EDLLRESDFVVLAVPLTRET  218 (334)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHH-HHHCCEE----CCH---HHHHHHCSEEEECCCCCTTT
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhH-hhcCccc----CCH---HHHHhhCCEEEECCCCChHH
Confidence            35679999999999999999999999999999988765 333 4566532    122   222336899999987653  


Q ss_pred             --cH-HHHHhccccCCEEEEecC
Q 027668          119 --PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 --~~-~~~~~~l~~~g~iv~~g~  138 (220)
                        .+ ......++++..++.++.
T Consensus       219 ~~~i~~~~~~~mk~~ailIn~sr  241 (334)
T 2dbq_A          219 YHLINEERLKLMKKTAILINIAR  241 (334)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSC
T ss_pred             HHhhCHHHHhcCCCCcEEEECCC
Confidence              22 345677888888887763

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.59  E-value=9.9e-05  Score=55.27  Aligned_cols=90  Identities=17%  Similarity=0.231  Sum_probs=59.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc----CCccEEEEcCCCcc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM----GTMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~----~~~d~vid~~g~~~  118 (220)
                      +++||.|+ |.+|..+++.+...|++|+++++++++.+.   .+.    .|-.+.+.++++.    +++|++|+++|...
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~---~~~----~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~~~   74 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA---DLS----TAEGRKQAIADVLAKCSKGMDGLVLCAGLGP   74 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---CTT----SHHHHHHHHHHHHTTCTTCCSEEEECCCCCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc---ccc----cCCCCHHHHHHHHHHhCCCCCEEEECCCCCC
Confidence            46899997 999999999999999999999988754321   000    1222233444433    46799999998643


Q ss_pred             ------------------cHHHHHhcccc--CCEEEEecCCC
Q 027668          119 ------------------PLMPLIGLLKS--QGKLVLLGAPE  140 (220)
Q Consensus       119 ------------------~~~~~~~~l~~--~g~iv~~g~~~  140 (220)
                                        ..+.++..+++  .|+++.+++..
T Consensus        75 ~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           75 QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             CcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence                              12334444433  38999987653

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=97.59  E-value=0.00027  Score=52.81  Aligned_cols=96  Identities=22%  Similarity=0.220  Sum_probs=67.4

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHHc----CCc--EEecCCCHHHHHHhc-CCccE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERL----GAD--SFLVSRDQDEMQAAM-GTMDG  109 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~----g~~--~v~~~~~~~~~~~~~-~~~d~  109 (220)
                      .+.++++||.+|+|. |..+..+++..  +.+++.++.+++..+.+.+.+    |..  .+... +.... .+. +.+|+
T Consensus        93 ~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~-d~~~~-~~~~~~~D~  169 (258)
T 2pwy_A           93 DLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLG-KLEEA-ELEEAAYDG  169 (258)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEES-CGGGC-CCCTTCEEE
T ss_pred             CCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEEC-chhhc-CCCCCCcCE
Confidence            378999999999985 88888999885  469999999988766664433    422  12222 21111 122 36999


Q ss_pred             EEEcCCCc-ccHHHHHhccccCCEEEEec
Q 027668          110 IIDTVSAV-HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       110 vid~~g~~-~~~~~~~~~l~~~g~iv~~g  137 (220)
                      |+...... ..+..+.+.|+++|+++.+.
T Consensus       170 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          170 VALDLMEPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             EEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            99766554 46778899999999998864

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.58  E-value=0.00035  Score=53.25  Aligned_cols=75  Identities=28%  Similarity=0.327  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE----EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS----FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~----v~~~~~~~~~~~~-------~~~  106 (220)
                      +++++||.|+ |.+|..+++.+...|++|+++++++++.+.+.++   .|...    ..|-.+.+.+.++       .++
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  106 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMGG  106 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            4689999997 9999999999999999999999998776655333   23211    1344454443322       248


Q ss_pred             ccEEEEc-CCC
Q 027668          107 MDGIIDT-VSA  116 (220)
Q Consensus       107 ~d~vid~-~g~  116 (220)
                      +|++|++ +|.
T Consensus       107 iD~li~naag~  117 (286)
T 1xu9_A          107 LDMLILNHITN  117 (286)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCccC
Confidence            9999998 454

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.58  E-value=0.0002  Score=53.29  Aligned_cols=73  Identities=15%  Similarity=0.064  Sum_probs=52.7

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEE-e--CCcccHHHHHHHc-CCcEEecCCCH-HHHHHh---cCCccEEEEc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-S--TSPSKKSEAVERL-GADSFLVSRDQ-DEMQAA---MGTMDGIIDT  113 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~-~--~~~~~~~~~~~~~-g~~~v~~~~~~-~~~~~~---~~~~d~vid~  113 (220)
                      ++++||.|+ |.+|.++++.+...|++|+++ +  ++.++.+.+.+++ +.+ +.+..+. ..+++.   .+++|++|++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~g~iD~lv~~   79 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTI-ALAEQKPERLVDATLQHGEAIDTIVSN   79 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTEE-ECCCCCGGGHHHHHGGGSSCEEEEEEC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            467899997 999999999999999999999 6  8877777666665 332 3344442 223332   3489999999


Q ss_pred             CCC
Q 027668          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      +|.
T Consensus        80 Ag~   82 (244)
T 1zmo_A           80 DYI   82 (244)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            874

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=97.58  E-value=0.0002  Score=53.73  Aligned_cols=95  Identities=19%  Similarity=0.125  Sum_probs=60.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC---------------------cEEecCCCHHH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---------------------DSFLVSRDQDE   99 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~---------------------~~v~~~~~~~~   99 (220)
                      .++.+||.+|||. |..+..+++. |++|+.++.++...+.+.++.+.                     ..-+...+...
T Consensus        67 ~~~~~vLD~GCG~-G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGK-AIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTT-CTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCC-cHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            5789999999874 7777777764 99999999999888777555431                     11111111111


Q ss_pred             HHHh-cCCccEEEEcCCCc--------ccHHHHHhccccCCEEEEec
Q 027668          100 MQAA-MGTMDGIIDTVSAV--------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       100 ~~~~-~~~~d~vid~~g~~--------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      .... .+.||+|++...-.        ..+..+.+.|++||+++++.
T Consensus       145 l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             GGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence            1111 14799999754321        12455778899999986543

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=97.58  E-value=0.00026  Score=54.94  Aligned_cols=90  Identities=14%  Similarity=0.177  Sum_probs=65.1

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc-
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH-  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  118 (220)
                      -.|.+|.|+|.|.+|..+++.++..|++|++.++ +.++ ..+ +++|+..+   .+   ..++....|+|+.++.... 
T Consensus       144 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-~~~g~~~~---~~---l~ell~~aDvVil~~p~~~~  215 (320)
T 1gdh_A          144 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDE-ASYQATFH---DS---LDSLLSVSQFFSLNAPSTPE  215 (320)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHH-HHHTCEEC---SS---HHHHHHHCSEEEECCCCCTT
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhh-hhcCcEEc---CC---HHHHHhhCCEEEEeccCchH
Confidence            3678999999999999999999999999999998 7654 333 46676421   12   2223346899999887532 


Q ss_pred             ---cH-HHHHhccccCCEEEEecC
Q 027668          119 ---PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 ---~~-~~~~~~l~~~g~iv~~g~  138 (220)
                         .+ ...+..+++++.++.++.
T Consensus       216 t~~~i~~~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          216 TRYFFNKATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             TTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             HHhhcCHHHHhhCCCCcEEEECCC
Confidence               22 346678888888888775

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.58  E-value=0.0018  Score=50.40  Aligned_cols=130  Identities=15%  Similarity=0.182  Sum_probs=74.8

Q ss_pred             EEEEEcCchHHHHH-HHHHHHCCCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEEcCCCcccH
Q 027668           45 HVGVVGLGGLGHVA-VKFAKAMGVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAVHPL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~~-~~~~~~~g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~~~~  120 (220)
                      +|.|+|+|.+|... +..++..+.+++ +.++++++.+.+.+++|...++  .+.   +++.  ..+|+|+.|+......
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~--~~~---~~~l~~~~~D~V~i~tp~~~h~   76 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSV--TSV---EELVGDPDVDAVYVSTTNELHR   76 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCB--SCH---HHHHTCTTCCEEEECSCGGGHH
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCccc--CCH---HHHhcCCCCCEEEEeCChhHhH
Confidence            57899999999876 644444778776 5566666777777788864332  222   2222  2699999999987556


Q ss_pred             HHHHhccccCCEEEEecCCCCCcccC-cccc----ccCCcEE-EEeeccCHHHHHHHHHHHHhCCcc
Q 027668          121 MPLIGLLKSQGKLVLLGAPEKPLELP-AFPL----LTGEKIV-GGSLIGGLKETQEMIDFAAKHNIR  181 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~~~~~~~~~-~~~~----~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~  181 (220)
                      ..+..+++.| +-+++.-+.. .+.. ...+    -.++..+ .+........++.+.+++.+|.+-
T Consensus        77 ~~~~~al~~G-k~v~~ekP~~-~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~iG  141 (332)
T 2glx_A           77 EQTLAAIRAG-KHVLCEKPLA-MTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAEGRIG  141 (332)
T ss_dssp             HHHHHHHHTT-CEEEECSSSC-SSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHTTTTS
T ss_pred             HHHHHHHHCC-CeEEEeCCCc-CCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHHcCCCC
Confidence            6677777765 4444433211 1110 0111    1123333 333333334466777777777653

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.58  E-value=0.00049  Score=51.62  Aligned_cols=74  Identities=16%  Similarity=0.223  Sum_probs=53.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHH----h----cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQA----A----MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~----~----~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|++++++.++.+.+.+++   +...   ..|-.+.+.+++    .    .++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   83 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGR   83 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4688999997 99999999999999999999999887665554443   4321   124445443322    1    357


Q ss_pred             ccEEEEcCC
Q 027668          107 MDGIIDTVS  115 (220)
Q Consensus       107 ~d~vid~~g  115 (220)
                      +|++|+++|
T Consensus        84 id~lvnnAg   92 (260)
T 2qq5_A           84 LDVLVNNAY   92 (260)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEECCc
Confidence            899999994

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.57  E-value=0.00014  Score=54.04  Aligned_cols=94  Identities=21%  Similarity=0.208  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE--ecCCCHHHHHH-------hc--CCcc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF--LVSRDQDEMQA-------AM--GTMD  108 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~-------~~--~~~d  108 (220)
                      ..++++||.|+ |.+|..+++.+...|++|+++++++++..      +....  .|-.+.+.+++       ..  +++|
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc------CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            45789999997 99999999999999999999999876432      11111  12233333322       12  4799


Q ss_pred             EEEEcCCCc-------c-------------------cHHHHHhccccCCEEEEecCCC
Q 027668          109 GIIDTVSAV-------H-------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       109 ~vid~~g~~-------~-------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++|+++|..       +                   ..+.++..++++|+++.+++..
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~  136 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  136 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHH
Confidence            999999842       1                   1122344555678999987643

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=97.57  E-value=0.00016  Score=56.45  Aligned_cols=89  Identities=17%  Similarity=0.243  Sum_probs=64.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..+++.++..|++|++.+++..+.+.. ..+|....    +   +.++....|+|+-++....   
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~----~---l~ell~~aDvV~l~~P~t~~t~  215 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTE-QRLGLRQV----A---CSELFASSDFILLALPLNADTL  215 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHH-HHHTEEEC----C---HHHHHHHCSEEEECCCCSTTTT
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHH-HhcCceeC----C---HHHHHhhCCEEEEcCCCCHHHH
Confidence            57899999999999999999999999999999886444333 45665321    2   2233345799998876421   


Q ss_pred             -cH-HHHHhccccCCEEEEecC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~  138 (220)
                       .+ ...+..|++++.++.++.
T Consensus       216 ~li~~~~l~~mk~gailIN~ar  237 (330)
T 4e5n_A          216 HLVNAELLALVRPGALLVNPCR  237 (330)
T ss_dssp             TCBCHHHHTTSCTTEEEEECSC
T ss_pred             HHhCHHHHhhCCCCcEEEECCC
Confidence             22 356778888888888874

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.57  E-value=3.3e-05  Score=57.95  Aligned_cols=68  Identities=19%  Similarity=0.262  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      ++ +++|+|+|++|.+++..+...|+ +|+++.++.++.+.+.++++.   ...   +...+...++|+||+|++.
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~---~~~~~~~~~aDiVInatp~  176 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSL---DQLDEVVKKAKSLFNTTSV  176 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEG---GGHHHHHHTCSEEEECSST
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCH---HHHHhhhcCCCEEEECCCC
Confidence            56 89999999999999999999999 999999998776655444432   112   2233333479999998854

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.56  E-value=0.00034  Score=51.37  Aligned_cols=99  Identities=15%  Similarity=0.088  Sum_probs=66.8

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHHc---CC---cEEecCCCHHHHHHhc-----CC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERL---GA---DSFLVSRDQDEMQAAM-----GT  106 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~---g~---~~v~~~~~~~~~~~~~-----~~  106 (220)
                      ..++++||-+|+| .|..++.+++..  +.+++.++.+++..+.+.+.+   |.   -.++..+..+.+..+.     +.
T Consensus        67 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~  145 (229)
T 2avd_A           67 LIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT  145 (229)
T ss_dssp             HTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             hcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence            4677899999998 688888898876  469999999988766654332   43   1222222223333332     57


Q ss_pred             ccEEEEcCCCc---ccHHHHHhccccCCEEEEecCC
Q 027668          107 MDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~vid~~g~~---~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ||+||-.....   ..+..+.+.|++||.++.....
T Consensus       146 ~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  181 (229)
T 2avd_A          146 FDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVL  181 (229)
T ss_dssp             EEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred             ccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            99998654332   2367788899999999986543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.56  E-value=0.00041  Score=53.99  Aligned_cols=72  Identities=24%  Similarity=0.337  Sum_probs=53.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      -+|||.|+ |.+|..+++.+...|.+|++++++..+.+.+ ...+...+ .|..+.+.+.+...++|+||.+++.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL-AYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGG-GGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhh-ccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence            37999997 9999999999999999999999987765433 22344433 3555667777777799999999875

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.56  E-value=0.00075  Score=51.07  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=67.7

Q ss_pred             hhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCcc
Q 027668           30 VYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        30 a~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  108 (220)
                      ...+|...+ +..+.+++|+|+|++|.+++..+...|+ +|+++.|+.++.+.++++++.. . .. +..     ...+|
T Consensus       107 ~~~~l~~~~-~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~-~-~~-~~~-----~~~~D  177 (271)
T 1npy_A          107 IVKLIEKYH-LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA-Y-IN-SLE-----NQQAD  177 (271)
T ss_dssp             HHHHHHHTT-CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE-E-ES-CCT-----TCCCS
T ss_pred             HHHHHHHhC-CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc-c-ch-hhh-----cccCC
Confidence            334454443 3467899999999999999999999998 8999999988888887888753 1 11 110     14799


Q ss_pred             EEEEcCCCccc-------HHHHHhccccCCEEEEecC
Q 027668          109 GIIDTVSAVHP-------LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       109 ~vid~~g~~~~-------~~~~~~~l~~~g~iv~~g~  138 (220)
                      +||+|++....       .......++++..++.+..
T Consensus       178 ivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY  214 (271)
T 1npy_A          178 ILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVA  214 (271)
T ss_dssp             EEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCC
T ss_pred             EEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeec
Confidence            99999876421       0011234556666655543

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.56  E-value=3.8e-05  Score=55.03  Aligned_cols=96  Identities=17%  Similarity=0.108  Sum_probs=62.0

Q ss_pred             hccCCCCCCEEEEEcCchHHHHHHHHHHHCC----------CeEEEEeCCcccHHHHHHHcCCcEEe-cCC--CHHH---
Q 027668           36 FYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG----------VKVTVISTSPSKKSEAVERLGADSFL-VSR--DQDE---   99 (220)
Q Consensus        36 ~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g----------~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~--~~~~---   99 (220)
                      ....++++++||.+|+|+ |..+..+++..|          .+|+.++.++....     -++. .+ ..+  +.+.   
T Consensus        16 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~~-----~~~~-~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           16 RHQILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPL-----EGAT-FLCPADVTDPRTSQR   88 (196)
T ss_dssp             HHCCCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCCC-----TTCE-EECSCCTTSHHHHHH
T ss_pred             hcCCCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhcccC-----CCCe-EEEeccCCCHHHHHH
Confidence            344468899999999988 999999999876          68999998874310     1222 22 111  2111   


Q ss_pred             HHHhc--CCccEEEE-----cCCCc------------ccHHHHHhccccCCEEEEecC
Q 027668          100 MQAAM--GTMDGIID-----TVSAV------------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       100 ~~~~~--~~~d~vid-----~~g~~------------~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      +.+..  +.||+|+.     +++..            ..+..+.+.|+++|+++....
T Consensus        89 ~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           89 ILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            11222  27999994     33321            235567889999999987644

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.55  E-value=8.2e-05  Score=55.07  Aligned_cols=93  Identities=24%  Similarity=0.296  Sum_probs=61.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe--cCCCHHHHHH-------hc--CCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL--VSRDQDEMQA-------AM--GTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~-------~~--~~~d~  109 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++++++++.+.      ....+  |-.+.+.+.+       ..  +++|+
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~   75 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD------SNILVDGNKNWTEQEQSILEQTASSLQGSQVDG   75 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS------EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcccccc------ccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCE
Confidence            3578999997 999999999999999999999998764321      11111  2223333322       12  58999


Q ss_pred             EEEcCCCc-------c-------------------cHHHHHhccccCCEEEEecCCC
Q 027668          110 IIDTVSAV-------H-------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 vid~~g~~-------~-------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +|+++|..       +                   ..+.++..++++|+++.+++..
T Consensus        76 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~  132 (236)
T 1ooe_A           76 VFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  132 (236)
T ss_dssp             EEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             EEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchh
Confidence            99999842       1                   0233445555678999887643

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.55  E-value=0.00037  Score=51.71  Aligned_cols=76  Identities=17%  Similarity=0.276  Sum_probs=50.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEE-eCCcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVI-STSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~-~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|+++ .+++++.+.+.++   .+...   ..|-.+.+.+++.       .++
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4678999997 999999999999999999998 5555544443332   34322   2244555444332       248


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++|+++|..
T Consensus        84 ~d~vi~~Ag~~   94 (247)
T 2hq1_A           84 IDILVNNAGIT   94 (247)
T ss_dssp             CCEEEECC---
T ss_pred             CCEEEECCCCC
Confidence            99999998753

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.55  E-value=0.00042  Score=53.95  Aligned_cols=76  Identities=18%  Similarity=0.185  Sum_probs=55.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----C--CcEE-ecCCCHHHHHHhcC--CccEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----G--ADSF-LVSRDQDEMQAAMG--TMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g--~~~v-~~~~~~~~~~~~~~--~~d~vi  111 (220)
                      .+.+|||.|+ |.+|..+++.+...|++|+++++..++.....+.+    +  ...+ .|-.+.+.+.+...  ++|+||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            4578999997 99999999999999999999998766544332222    2  3222 24455666666554  899999


Q ss_pred             EcCCCc
Q 027668          112 DTVSAV  117 (220)
Q Consensus       112 d~~g~~  117 (220)
                      .+++..
T Consensus        84 h~A~~~   89 (341)
T 3enk_A           84 HFAALK   89 (341)
T ss_dssp             ECCCCC
T ss_pred             ECcccc
Confidence            999864

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.54  E-value=0.00014  Score=54.40  Aligned_cols=97  Identities=19%  Similarity=0.174  Sum_probs=67.6

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHHc---CCc--EEecCCCHHHHHHhc-CCccE
Q 027668           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERL---GAD--SFLVSRDQDEMQAAM-GTMDG  109 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~---g~~--~v~~~~~~~~~~~~~-~~~d~  109 (220)
                      ..++++++||-+|+|+ |..+..+++..  +.+++.++.+++..+.+.+.+   |..  ..+...+..  ..+. +.||+
T Consensus        89 ~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~~~~D~  165 (255)
T 3mb5_A           89 AGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIY--EGIEEENVDH  165 (255)
T ss_dssp             TTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGG--GCCCCCSEEE
T ss_pred             hCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchh--hccCCCCcCE
Confidence            3468999999999986 88888888885  469999999988766664432   432  122222211  1122 26999


Q ss_pred             EEEcCCCcc-cHHHHHhccccCCEEEEec
Q 027668          110 IIDTVSAVH-PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       110 vid~~g~~~-~~~~~~~~l~~~g~iv~~g  137 (220)
                      |+-...... .+..+.+.|+++|+++.+.
T Consensus       166 v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          166 VILDLPQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             EEECSSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            997766543 5788999999999998863

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.54  E-value=0.0022  Score=48.75  Aligned_cols=89  Identities=24%  Similarity=0.246  Sum_probs=58.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc------------CCc---------EEecCCCHHHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL------------GAD---------SFLVSRDQDEMQA  102 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~------------g~~---------~v~~~~~~~~~~~  102 (220)
                      ++|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+..            +..         .+...   +...+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~---~~~~~   81 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS---DDLAQ   81 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE---SCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe---CCHHH
Confidence            5799999999999999999999999999999988776664331            110         00000   11223


Q ss_pred             hcCCccEEEEcCCCcc-----cHHHHHhccccCCEEEE
Q 027668          103 AMGTMDGIIDTVSAVH-----PLMPLIGLLKSQGKLVL  135 (220)
Q Consensus       103 ~~~~~d~vid~~g~~~-----~~~~~~~~l~~~g~iv~  135 (220)
                      ...+.|+||+|+....     .+......++++..++.
T Consensus        82 ~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s  119 (283)
T 4e12_A           82 AVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFAT  119 (283)
T ss_dssp             HTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEE
Confidence            3457999999998751     12333444555555543

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.53  E-value=0.00044  Score=58.39  Aligned_cols=98  Identities=19%  Similarity=0.223  Sum_probs=63.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc---------ccHHHHHH---HcCCcEEecCCCHH----HHH---
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP---------SKKSEAVE---RLGADSFLVSRDQD----EMQ---  101 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~---------~~~~~~~~---~~g~~~v~~~~~~~----~~~---  101 (220)
                      .|+.+||.|+ +++|.++++.+...|++|++.++..         ++.+.+.+   ..|...+.+..+.+    .++   
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~~   86 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETAV   86 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH
Confidence            4678899997 8999999999999999999987654         33333333   33544444554432    222   


Q ss_pred             HhcCCccEEEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCC
Q 027668          102 AAMGTMDGIIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAP  139 (220)
Q Consensus       102 ~~~~~~d~vid~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~  139 (220)
                      +..+++|++|+++|...                         ..+.++..|+  .+|+||.+++.
T Consensus        87 ~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~  151 (604)
T 2et6_A           87 KNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSP  151 (604)
T ss_dssp             HHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCH
Confidence            22358999999998531                         1234555553  35899998764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.53  E-value=0.00091  Score=51.37  Aligned_cols=91  Identities=21%  Similarity=0.304  Sum_probs=62.1

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-----cHHHHH--HHcCCcEE-ecCCCHHHHHHhcCCccEEEEcC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-----KKSEAV--ERLGADSF-LVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-----~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      .+|+|.|+ |.+|..+++.+...|.+|++++++..     +.+.+.  +..++..+ .|..+.+.+.+...++|+||.++
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a   84 (313)
T 1qyd_A            5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL   84 (313)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEECC
Confidence            57999997 99999999999999999999999842     222221  12344433 35556777777778999999998


Q ss_pred             CCc------ccHHHHHhccccCC---EEE
Q 027668          115 SAV------HPLMPLIGLLKSQG---KLV  134 (220)
Q Consensus       115 g~~------~~~~~~~~~l~~~g---~iv  134 (220)
                      +..      ......++.++..|   +++
T Consensus        85 ~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           85 AGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             CCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             ccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            754      12334455544433   676

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.53  E-value=0.00048  Score=53.22  Aligned_cols=89  Identities=21%  Similarity=0.213  Sum_probs=62.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      -.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+ .+.|....   .+.   .+.....|+||-|+..+..+..
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-~~~g~~~~---~~~---~~~~~~aDvvi~~vp~~~~~~~   93 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDEL-VEHGASVC---ESP---AEVIKKCKYTIAMLSDPCAALS   93 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHH-HHTTCEEC---SSH---HHHHHHCSEEEECCSSHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHCCCeEc---CCH---HHHHHhCCEEEEEcCCHHHHHH
Confidence            3579999999999999999999999999999999888777 45665421   121   1222357999999987543444


Q ss_pred             HH-------hccccCCEEEEecC
Q 027668          123 LI-------GLLKSQGKLVLLGA  138 (220)
Q Consensus       123 ~~-------~~l~~~g~iv~~g~  138 (220)
                      .+       ..++++..++.++.
T Consensus        94 v~~~~~~l~~~l~~g~~vv~~st  116 (310)
T 3doj_A           94 VVFDKGGVLEQICEGKGYIDMST  116 (310)
T ss_dssp             HHHSTTCGGGGCCTTCEEEECSC
T ss_pred             HHhCchhhhhccCCCCEEEECCC
Confidence            44       34556666666554

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.53  E-value=0.00053  Score=52.57  Aligned_cols=92  Identities=16%  Similarity=0.186  Sum_probs=62.9

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc-------ccHHHHH--HHcCCcEE-ecCCCHHHHHHhcCCccEEE
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-------SKKSEAV--ERLGADSF-LVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~-------~~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~vi  111 (220)
                      +.+|+|.|+ |.+|..+++.+...|.+|+++++++       ++.+.+.  +..|+..+ .|..+.+.+.+...++|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            357999997 9999999998888899999999986       3332221  23455433 35666777777777999999


Q ss_pred             EcCCCcc--cHHHHHhccccC---CEEE
Q 027668          112 DTVSAVH--PLMPLIGLLKSQ---GKLV  134 (220)
Q Consensus       112 d~~g~~~--~~~~~~~~l~~~---g~iv  134 (220)
                      .+++...  .....++.++..   ++++
T Consensus        82 ~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           82 CAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             ECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             ECCcccccccHHHHHHHHHhcCCceEEe
Confidence            9998642  123344444432   4665

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.52  E-value=0.00038  Score=51.63  Aligned_cols=75  Identities=15%  Similarity=0.160  Sum_probs=53.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHHc-CCc--E-EecCCCHHHHHHhc-------C--
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERL-GAD--S-FLVSRDQDEMQAAM-------G--  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~-g~~--~-v~~~~~~~~~~~~~-------~--  105 (220)
                      +++++||.|+ |.+|..+++.+...|  ++|++++++.++.+.+ ++. +..  . ..|-.+.+.++++.       +  
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l-~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   80 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL-KSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSD   80 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH-HTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHH-HhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCC
Confidence            3578999997 999999999999999  9999999998877665 333 222  1 23444544443322       2  


Q ss_pred             CccEEEEcCCCc
Q 027668          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~vid~~g~~  117 (220)
                      ++|++|.++|..
T Consensus        81 ~id~li~~Ag~~   92 (250)
T 1yo6_A           81 GLSLLINNAGVL   92 (250)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCcEEEECCccc
Confidence            799999998753

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.52  E-value=0.00085  Score=51.28  Aligned_cols=74  Identities=24%  Similarity=0.221  Sum_probs=55.9

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCC-CeEEEEeCCcccHH-HHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKKS-EAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~-~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      .++|||.|+ |.+|..+++.+...| .+|+++++++++.. ......++..+ .|..+.+.+.+...++|.||.+++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   82 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNY   82 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCCC
Confidence            468999997 999999999888888 89999999876532 11133465543 3556677777777899999999874

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.52  E-value=0.00013  Score=52.25  Aligned_cols=98  Identities=15%  Similarity=0.172  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHH---cCC--cEEecCCCHHHHHHh-cCCccEEE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVER---LGA--DSFLVSRDQDEMQAA-MGTMDGII  111 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~---~g~--~~v~~~~~~~~~~~~-~~~~d~vi  111 (220)
                      ++++++||-+|+|. |..+..+++..+  .+++.++.+++..+.+.+.   .|.  ...+...+....... .+.||+|+
T Consensus        20 ~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           20 VKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             CCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             CCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            68899999999876 788888888754  5999999998866655433   232  112222232222222 24799998


Q ss_pred             EcCCC---------------cccHHHHHhccccCCEEEEecC
Q 027668          112 DTVSA---------------VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       112 d~~g~---------------~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      -..+.               ...+..+.+.|+++|+++....
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           99 FNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            65433               1246778889999999988754

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.51  E-value=0.00047  Score=53.80  Aligned_cols=89  Identities=18%  Similarity=0.262  Sum_probs=64.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..+++.++..|.+|++.+++.++.+.+ .++|...+    +.   .+.....|+|+.++....   
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~----~l---~e~l~~aDvVi~~vp~~~~t~  225 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEA-AEFQAEFV----ST---PELAAQSDFIVVACSLTPATE  225 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHH-HTTTCEEC----CH---HHHHHHCSEEEECCCCCTTTT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHH-HhcCceeC----CH---HHHHhhCCEEEEeCCCChHHH
Confidence            46799999999999999999999999999999887655544 45565422    22   222236799999886532   


Q ss_pred             -cH-HHHHhccccCCEEEEecC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~  138 (220)
                       .+ ...+..++++..++.++.
T Consensus       226 ~~i~~~~~~~mk~gailIn~sr  247 (330)
T 2gcg_A          226 GLCNKDFFQKMKETAVFINISR  247 (330)
T ss_dssp             TCBSHHHHHHSCTTCEEEECSC
T ss_pred             HhhCHHHHhcCCCCcEEEECCC
Confidence             22 345667888888877654

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=97.51  E-value=0.00022  Score=53.30  Aligned_cols=99  Identities=12%  Similarity=0.091  Sum_probs=66.2

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHH---cCCc---EEecCCCHHHHHHhcC--CccE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAAMG--TMDG  109 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~--~~d~  109 (220)
                      ..++.+||-+|+|. |..+..+++.+  +.+|+.++.+++..+.+.+.   .|..   .++..+..+......+  .||+
T Consensus        61 ~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~  139 (248)
T 3tfw_A           61 LTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL  139 (248)
T ss_dssp             HHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred             hcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence            45789999999875 88888888887  46999999998876665443   3432   2222222233333333  7999


Q ss_pred             EEEcCCCc---ccHHHHHhccccCCEEEEecCC
Q 027668          110 IIDTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       110 vid~~g~~---~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ||-.....   ..+..+.+.|++||.++.-...
T Consensus       140 V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~  172 (248)
T 3tfw_A          140 IFIDADKPNNPHYLRWALRYSRPGTLIIGDNVV  172 (248)
T ss_dssp             EEECSCGGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred             EEECCchHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence            98433322   2466778899999999886553

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.51  E-value=0.00037  Score=54.73  Aligned_cols=91  Identities=19%  Similarity=0.318  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHH-HCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc-
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH-  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  118 (220)
                      -.|.+|.|+|.|.+|..+++.++ ..|.+|++.+++.++.+.+ .++|...+   .+.   .++....|+|+.++.... 
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~-~~~g~~~~---~~l---~ell~~aDvVil~vp~~~~  233 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETE-KALGAERV---DSL---EELARRSDCVSVSVPYMKL  233 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH-HHHTCEEC---SSH---HHHHHHCSEEEECCCCSGG
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhH-hhcCcEEe---CCH---HHHhccCCEEEEeCCCChH
Confidence            45789999999999999999999 9999999999887665544 45665532   122   222235799998886532 


Q ss_pred             ---cH-HHHHhccccCCEEEEecC
Q 027668          119 ---PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 ---~~-~~~~~~l~~~g~iv~~g~  138 (220)
                         .+ ...+..++++..++.++.
T Consensus       234 t~~li~~~~l~~mk~gailin~sr  257 (348)
T 2w2k_A          234 THHLIDEAFFAAMKPGSRIVNTAR  257 (348)
T ss_dssp             GTTCBCHHHHHHSCTTEEEEECSC
T ss_pred             HHHHhhHHHHhcCCCCCEEEECCC
Confidence               22 245667788777776654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.51  E-value=0.00082  Score=49.26  Aligned_cols=99  Identities=17%  Similarity=0.177  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHH---HcCCc---EEecCCC-HHHHHHh-cCCccE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVE---RLGAD---SFLVSRD-QDEMQAA-MGTMDG  109 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~---~~g~~---~v~~~~~-~~~~~~~-~~~~d~  109 (220)
                      .+++.+||-+|+|. |..++.+++.+  +.+|+.++.+++..+.+.+   +.|..   ..+...+ .+..... .+.||+
T Consensus        54 ~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~  132 (221)
T 3dr5_A           54 GNGSTGAIAITPAA-GLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQL  132 (221)
T ss_dssp             CTTCCEEEEESTTH-HHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEE
T ss_pred             CCCCCCEEEEcCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCe
Confidence            34556999999874 88888899876  5799999999886655543   33432   2222223 2333333 348999


Q ss_pred             EEEcCCCcc---cHHHHHhccccCCEEEEecCC
Q 027668          110 IIDTVSAVH---PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       110 vid~~g~~~---~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ||-......   .++.+.+.|++||.++.-...
T Consensus       133 V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~  165 (221)
T 3dr5_A          133 VFGQVSPMDLKALVDAAWPLLRRGGALVLADAL  165 (221)
T ss_dssp             EEECCCTTTHHHHHHHHHHHEEEEEEEEETTTT
T ss_pred             EEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            986543322   356788999999999985543

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.51  E-value=0.00042  Score=51.34  Aligned_cols=74  Identities=12%  Similarity=0.137  Sum_probs=53.2

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCC-------eEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-----
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGV-------KVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-----  103 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~-------~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-----  103 (220)
                      ++++||.|+ |.+|..+++.+...|+       +|++++++.++.+.+.+++   +...   ..|-.+.+.+++.     
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            467999997 9999999999988999       9999999887766554443   3221   2244455444332     


Q ss_pred             --cCCccEEEEcCCC
Q 027668          104 --MGTMDGIIDTVSA  116 (220)
Q Consensus       104 --~~~~d~vid~~g~  116 (220)
                        .+++|++|+++|.
T Consensus        82 ~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           82 ERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHTSCCSEEEECCCC
T ss_pred             HhCCCCCEEEEcCCc
Confidence              2479999999885

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=97.50  E-value=0.00042  Score=51.68  Aligned_cols=96  Identities=23%  Similarity=0.236  Sum_probs=64.3

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc---EEecCCCHHHHHHhcCCccEEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .+.++.+||-+|+|. |..+..+++..|.+++.++.+++..+.+.+.   .|..   .+...+-.+ .. ..+.||+|+.
T Consensus        33 ~~~~~~~VLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~fD~V~~  109 (256)
T 1nkv_A           33 RMKPGTRILDLGSGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG-YV-ANEKCDVAAC  109 (256)
T ss_dssp             CCCTTCEEEEETCTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT-CC-CSSCEEEEEE
T ss_pred             CCCCCCEEEEECCCC-CHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh-CC-cCCCCCEEEE
Confidence            478999999999986 8888889988899999999998866655332   3421   122211111 10 1247999985


Q ss_pred             cCCC------cccHHHHHhccccCCEEEEec
Q 027668          113 TVSA------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g~------~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      ....      ...+..+.+.|++||+++...
T Consensus       110 ~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          110 VGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             ESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            3211      123667788999999998764

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.50  E-value=0.00047  Score=54.26  Aligned_cols=75  Identities=11%  Similarity=0.029  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHH--CCCeEEEEeCCccc-------------HHHHHHHcCCcE-EecCCCHHHHHHh-
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKA--MGVKVTVISTSPSK-------------KSEAVERLGADS-FLVSRDQDEMQAA-  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~--~g~~v~~~~~~~~~-------------~~~~~~~~g~~~-v~~~~~~~~~~~~-  103 (220)
                      .+.+|||.|+ |.+|..+++.+..  .|++|+++++....             .... ...+... ..|..+.+.+.++ 
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~   87 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL-IGFKGEVIAADINNPLDLRRLE   87 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG-TTCCSEEEECCTTCHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc-cccCceEEECCCCCHHHHHHhh
Confidence            5689999997 9999999999888  89999999986541             1111 1112222 2355567777777 


Q ss_pred             cCCccEEEEcCCCc
Q 027668          104 MGTMDGIIDTVSAV  117 (220)
Q Consensus       104 ~~~~d~vid~~g~~  117 (220)
                      ..++|+||.+++..
T Consensus        88 ~~~~D~vih~A~~~  101 (362)
T 3sxp_A           88 KLHFDYLFHQAAVS  101 (362)
T ss_dssp             TSCCSEEEECCCCC
T ss_pred             ccCCCEEEECCccC
Confidence            56999999999853

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.50  E-value=0.00013  Score=55.36  Aligned_cols=102  Identities=15%  Similarity=0.115  Sum_probs=67.5

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEE
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~v  110 (220)
                      ..++.+...--.+.+++|+|+|.+|.+++..+...|++|++++++.++.+.+.+++|.. +.+  +   ..+....+|+|
T Consensus       117 ~~~l~~~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~-~~~--~---~~~~~~~aDiV  190 (275)
T 2hk9_A          117 LKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLE-VVN--S---PEEVIDKVQVI  190 (275)
T ss_dssp             HHHHHHHCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEE-ECS--C---GGGTGGGCSEE
T ss_pred             HHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCe-eeh--h---HHhhhcCCCEE
Confidence            33444433223578999999999999999999989999999999988777776666643 221  1   11223478999


Q ss_pred             EEcCCCcccH---HH-HHhccccCCEEEEecC
Q 027668          111 IDTVSAVHPL---MP-LIGLLKSQGKLVLLGA  138 (220)
Q Consensus       111 id~~g~~~~~---~~-~~~~l~~~g~iv~~g~  138 (220)
                      |.|++....-   .. ....++++..++.++.
T Consensus       191 i~atp~~~~~~~~~~i~~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          191 VNTTSVGLKDEDPEIFNYDLIKKDHVVVDIIY  222 (275)
T ss_dssp             EECSSTTSSTTCCCSSCGGGCCTTSEEEESSS
T ss_pred             EEeCCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            9999875310   00 1245666666666555

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.49  E-value=0.00036  Score=52.37  Aligned_cols=85  Identities=14%  Similarity=0.257  Sum_probs=62.9

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLI  124 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~  124 (220)
                      +|.|+|+|.+|...+..+...|.+|.+.++++++.+.+.+++|...   ..+.+   +...+.|+||.|+... .....+
T Consensus         5 ~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~---~~~~~---~~~~~~D~Vi~~v~~~-~~~~v~   77 (259)
T 2ahr_A            5 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY---AMSHQ---DLIDQVDLVILGIKPQ-LFETVL   77 (259)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB---CSSHH---HHHHTCSEEEECSCGG-GHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEe---eCCHH---HHHhcCCEEEEEeCcH-hHHHHH
Confidence            6899999999999999888889899999999888777766677542   22222   2223789999999854 566777


Q ss_pred             hccccCCEEEEe
Q 027668          125 GLLKSQGKLVLL  136 (220)
Q Consensus       125 ~~l~~~g~iv~~  136 (220)
                      ..++++..++..
T Consensus        78 ~~l~~~~~vv~~   89 (259)
T 2ahr_A           78 KPLHFKQPIISM   89 (259)
T ss_dssp             TTSCCCSCEEEC
T ss_pred             HHhccCCEEEEe
Confidence            777766655554

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.47  E-value=0.0045  Score=48.11  Aligned_cols=132  Identities=12%  Similarity=0.110  Sum_probs=80.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHC-CCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAM-GVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~-g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      +|.|+|+|.+|...+..++.. +++++ +.++++++.+.+.+++|..    +.+.+.+-+ ...+|+|+.|+........
T Consensus         5 ~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~----~~~~~~~l~-~~~~D~V~i~tp~~~h~~~   79 (331)
T 4hkt_A            5 RFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE----VRTIDAIEA-AADIDAVVICTPTDTHADL   79 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE----ECCHHHHHH-CTTCCEEEECSCGGGHHHH
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC----cCCHHHHhc-CCCCCEEEEeCCchhHHHH
Confidence            688999999999888877765 67777 4666666777777788876    233332211 1279999999988766677


Q ss_pred             HHhccccCCEEEEecCCCCCcccCcc---c-cccCCcEE-EEeeccCHHHHHHHHHHHHhCCcce
Q 027668          123 LIGLLKSQGKLVLLGAPEKPLELPAF---P-LLTGEKIV-GGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       123 ~~~~l~~~g~iv~~g~~~~~~~~~~~---~-~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~  182 (220)
                      +..+++.|.. +++.-+.....-...   . .-.++..+ .++.......++.+.+++.+|.+-.
T Consensus        80 ~~~al~~gk~-v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~  143 (331)
T 4hkt_A           80 IERFARAGKA-IFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDDGRIGE  143 (331)
T ss_dssp             HHHHHHTTCE-EEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHcCCc-EEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHcCCCCc
Confidence            7777776544 555433211000001   1 11223333 3333333345777788888877643

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.46  E-value=0.00064  Score=52.47  Aligned_cols=91  Identities=18%  Similarity=0.230  Sum_probs=63.3

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHH--HHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEA--VERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~--~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      ++|||.|+ |.+|..+++.+...|.+|++++++.. +.+.+  ....|+..+ .|..+.+.+.+...++|+||.+++...
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~~   91 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFPQ   91 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGGG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchhh
Confidence            46999997 99999999999999999999999875 32222  123455433 356667777777789999999988532


Q ss_pred             --cHHHHHhccccC---CEEE
Q 027668          119 --PLMPLIGLLKSQ---GKLV  134 (220)
Q Consensus       119 --~~~~~~~~l~~~---g~iv  134 (220)
                        .....++.++..   ++++
T Consensus        92 ~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           92 ILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             STTHHHHHHHHHHHCCCCEEE
T ss_pred             hHHHHHHHHHHHhcCCCCEEE
Confidence              233444544432   4666

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=97.46  E-value=0.00034  Score=51.98  Aligned_cols=74  Identities=18%  Similarity=0.210  Sum_probs=46.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH-H----Hh---cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM-Q----AA---MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~-~----~~---~~~~d~vid  112 (220)
                      .++++||.|+ |++|.++++.+.. |++|+++++++++.+.+.+ ......+..+-.+.. .    +.   .+++|++|+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~   81 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAE-IEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH   81 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHT-STTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHh-hcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence            4688999997 9999999998766 8999999999887766643 322222211111110 0    11   137999999


Q ss_pred             cCCCc
Q 027668          113 TVSAV  117 (220)
Q Consensus       113 ~~g~~  117 (220)
                      ++|..
T Consensus        82 ~Ag~~   86 (245)
T 3e9n_A           82 AAAVA   86 (245)
T ss_dssp             CC---
T ss_pred             CCCcC
Confidence            99863

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.46  E-value=0.00061  Score=51.06  Aligned_cols=75  Identities=23%  Similarity=0.340  Sum_probs=52.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH----HcCCcE---EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE----RLGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |.+|..+++.+...|++|++++++.++.....+    +.+...   ..|-.+.+.++++       .+.
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   92 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            4678999997 999999999999999999999986654433222    234321   2344555444332       247


Q ss_pred             ccEEEEcCCC
Q 027668          107 MDGIIDTVSA  116 (220)
Q Consensus       107 ~d~vid~~g~  116 (220)
                      +|++|.++|.
T Consensus        93 id~li~~Ag~  102 (265)
T 1h5q_A           93 ISGLIANAGV  102 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999885

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.45  E-value=0.0013  Score=50.52  Aligned_cols=89  Identities=21%  Similarity=0.305  Sum_probs=63.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      .+|.|+|+|.+|...++.+...|.+|++.++++++.+.+ .+.|........     .+.....|+||.|+..+......
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~~~~~-----~e~~~~aDvvi~~vp~~~~~~~v   81 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANL-LAEGACGAAASA-----REFAGVVDALVILVVNAAQVRQV   81 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEESSS-----TTTTTTCSEEEECCSSHHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-HHcCCccccCCH-----HHHHhcCCEEEEECCCHHHHHHH
Confidence            579999999999999999999999999999998887777 455765412111     12234689999999875434444


Q ss_pred             H-------hccccCCEEEEecC
Q 027668          124 I-------GLLKSQGKLVLLGA  138 (220)
Q Consensus       124 ~-------~~l~~~g~iv~~g~  138 (220)
                      +       ..++++..++..+.
T Consensus        82 ~~~~~~l~~~l~~g~ivv~~st  103 (303)
T 3g0o_A           82 LFGEDGVAHLMKPGSAVMVSST  103 (303)
T ss_dssp             HC--CCCGGGSCTTCEEEECSC
T ss_pred             HhChhhHHhhCCCCCEEEecCC
Confidence            3       34556666665544

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.45  E-value=0.00046  Score=54.16  Aligned_cols=90  Identities=20%  Similarity=0.208  Sum_probs=63.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..+++.++..|++|++.+++.++. .. +.+|+..+.   +   ..++....|+|+.++....   
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~-~~~g~~~~~---~---l~ell~~aDvV~l~~P~t~~t~  238 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VE-RALGLQRVS---T---LQDLLFHSDCVTLHCGLNEHNH  238 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HH-HHHTCEECS---S---HHHHHHHCSEEEECCCCCTTCT
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hH-hhcCCeecC---C---HHHHHhcCCEEEEcCCCCHHHH
Confidence            57899999999999999999999999999998876542 22 456764321   2   2223335789988876532   


Q ss_pred             -cH-HHHHhccccCCEEEEecCC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~~  139 (220)
                       .+ ...+..++++..++.++..
T Consensus       239 ~li~~~~l~~mk~gailIN~arg  261 (347)
T 1mx3_A          239 HLINDFTVKQMRQGAFLVNTARG  261 (347)
T ss_dssp             TSBSHHHHTTSCTTEEEEECSCT
T ss_pred             HHhHHHHHhcCCCCCEEEECCCC
Confidence             22 4567778888888887654

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.45  E-value=0.001  Score=52.27  Aligned_cols=96  Identities=17%  Similarity=0.125  Sum_probs=64.5

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccH--HHHHHHc-CCcEE-ec-CCCHHHHHHhcCCccEEEEcCCC
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK--SEAVERL-GADSF-LV-SRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~--~~~~~~~-g~~~v-~~-~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      +.+|+|.|+ |.+|..+++.+...|.+|++++++.++.  +.+ ... +...+ .| ..+.+.+.+...++|.||.+++.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l-~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEEL-QAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHH-HTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHH-hhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            467999997 9999999998888999999999987654  223 222 33322 24 45667777777789999977654


Q ss_pred             c--c---cHHHHHhcccc-C--CEEEEecCC
Q 027668          117 V--H---PLMPLIGLLKS-Q--GKLVLLGAP  139 (220)
Q Consensus       117 ~--~---~~~~~~~~l~~-~--g~iv~~g~~  139 (220)
                      .  .   .....++.++. +  ++++.++..
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence            3  1   11223333333 3  588887764

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.45  E-value=0.00023  Score=56.26  Aligned_cols=76  Identities=16%  Similarity=0.138  Sum_probs=55.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHcCCcEE-ecCC-CHHHHHHhcCCccEEEEcCCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSF-LVSR-DQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~-~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .+.+|||.|+ |.+|..+++.+... |.+|++++++.++...+...-+...+ .|.. +.+.+.+...++|+||.+++..
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~~  102 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIA  102 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCccc
Confidence            3478999997 99999999988877 89999999988765544222334333 2455 5666666666899999988754

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.45  E-value=0.00015  Score=53.98  Aligned_cols=67  Identities=16%  Similarity=0.290  Sum_probs=46.1

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc----CCccEEEEcCCCc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM----GTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~----~~~d~vid~~g~~  117 (220)
                      ++|||.|+ |.+|..+++.+...|++|++++++.++.+.   .+.    .|..+.+.++++.    +++|++|.++|..
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---~~~----~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~~   73 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA---DLS----TPGGRETAVAAVLDRCGGVLDGLVCCAGVG   73 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC---CTT----SHHHHHHHHHHHHHHHTTCCSEEEECCCCC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc---ccc----CCcccHHHHHHHHHHcCCCccEEEECCCCC
Confidence            46899997 999999999999999999999988654321   000    1111223333322    4899999998854

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=97.44  E-value=0.00046  Score=52.50  Aligned_cols=96  Identities=17%  Similarity=0.148  Sum_probs=64.8

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC--cEEecCCCHHHHHHhcCCccEEEEc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA--DSFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~--~~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      .+.++.+||-+|+|. |..+..+++..|++|+.++.+++..+.+.+.+   |.  ...+...+..   ++.+.||+|+..
T Consensus        61 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~~~~fD~v~~~  136 (287)
T 1kpg_A           61 GLQPGMTLLDVGCGW-GATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE---QFDEPVDRIVSI  136 (287)
T ss_dssp             TCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG---GCCCCCSEEEEE
T ss_pred             CCCCcCEEEEECCcc-cHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh---hCCCCeeEEEEe
Confidence            368899999999986 77888888778999999999988766664432   21  1111112221   122679999865


Q ss_pred             C-----CC---cccHHHHHhccccCCEEEEecC
Q 027668          114 V-----SA---VHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 ~-----g~---~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      .     +.   ...+..+.+.|+++|.+++...
T Consensus       137 ~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  169 (287)
T 1kpg_A          137 GAFEHFGHERYDAFFSLAHRLLPADGVMLLHTI  169 (287)
T ss_dssp             SCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CchhhcChHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence            2     21   1235667888999999987654

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.44  E-value=0.00042  Score=53.12  Aligned_cols=87  Identities=21%  Similarity=0.278  Sum_probs=61.1

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLI  124 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~  124 (220)
                      +|.|+|+|.+|...++.+...|.+|+++++++++.+.+. +.|...   ..+.+   +...++|+||.|+..+..+...+
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~---~~~~~---~~~~~~D~vi~~v~~~~~~~~~~   79 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVI-AAGAET---ASTAK---AIAEQCDVIITMLPNSPHVKEVA   79 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEE---CSSHH---HHHHHCSEEEECCSSHHHHHHHH
T ss_pred             eEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HCCCee---cCCHH---HHHhCCCEEEEECCCHHHHHHHH
Confidence            689999999999999999889999999999888777664 446432   22222   22235899999998654344444


Q ss_pred             -------hccccCCEEEEecC
Q 027668          125 -------GLLKSQGKLVLLGA  138 (220)
Q Consensus       125 -------~~l~~~g~iv~~g~  138 (220)
                             ..++++..++.++.
T Consensus        80 ~~~~~l~~~l~~~~~vv~~s~  100 (299)
T 1vpd_A           80 LGENGIIEGAKPGTVLIDMSS  100 (299)
T ss_dssp             HSTTCHHHHCCTTCEEEECSC
T ss_pred             hCcchHhhcCCCCCEEEECCC
Confidence                   44666777766543

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.44  E-value=0.0035  Score=49.21  Aligned_cols=131  Identities=18%  Similarity=0.165  Sum_probs=78.9

Q ss_pred             CEEEEEcCchHHH-HHHHHHHHC-CCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEEcCCCcc
Q 027668           44 MHVGVVGLGGLGH-VAVKFAKAM-GVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~g~~G~-~~~~~~~~~-g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~~  118 (220)
                      -+|.|+|+|.+|. ..+..++.. +++++ +.+++.++.+.+.+++|+...   .+   .+++.  ..+|+|+.|+....
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~---~~---~~~ll~~~~~D~V~i~tp~~~  101 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPV---EG---YPALLERDDVDAVYVPLPAVL  101 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEE---ES---HHHHHTCTTCSEEEECCCGGG
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCc---CC---HHHHhcCCCCCEEEECCCcHH
Confidence            3689999999998 566666655 67776 556676777777788887643   22   22333  27999999998876


Q ss_pred             cHHHHHhccccCCEEEEecCCCCCcccCcc---c-cccCCcE-EEEeeccCHHHHHHHHHHHHhCCcc
Q 027668          119 PLMPLIGLLKSQGKLVLLGAPEKPLELPAF---P-LLTGEKI-VGGSLIGGLKETQEMIDFAAKHNIR  181 (220)
Q Consensus       119 ~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~---~-~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~  181 (220)
                      ....+..+++.|-. |++.-+-....-...   . .-.+++. ..+........++.+.+++++|.+-
T Consensus       102 h~~~~~~al~aGk~-Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG  168 (350)
T 3rc1_A          102 HAEWIDRALRAGKH-VLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLDEGVIG  168 (350)
T ss_dssp             HHHHHHHHHHTTCE-EEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHHHCCCc-EEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHhcCCCC
Confidence            67777777776544 555433211000000   1 1122333 3344333334467777777777664

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=97.44  E-value=0.00068  Score=52.95  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .++.+|||.|+ |.+|..+++.+...|++|+++++.+..       .+...+ .|..+.+.+.+...++|+||.+++..
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~   88 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM   88 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence            45678999997 999999999999999999999998754       234333 35566777777777999999998754

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.44  E-value=0.00045  Score=53.95  Aligned_cols=103  Identities=18%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHHcC----------------CcEEecCC
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERLG----------------ADSFLVSR   95 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~g----------------~~~v~~~~   95 (220)
                      +.... +.++++||-+|+|+ |..++.+++..|  .+|+.++.+++..+.+.+.+.                .-.++..+
T Consensus        98 l~~l~-~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d  175 (336)
T 2b25_A           98 LSMMD-INPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  175 (336)
T ss_dssp             HHHHT-CCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHhcC-CCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence            44443 78999999999987 888888888766  589999999887666544221                11122221


Q ss_pred             CHHHHHHhc-CCccEEEEcCCCc-ccHHHHHhccccCCEEEEecC
Q 027668           96 DQDEMQAAM-GTMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus        96 ~~~~~~~~~-~~~d~vid~~g~~-~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      -.+....+. +.||+|+-....+ ..+..+.+.|+++|+++.+..
T Consensus       176 ~~~~~~~~~~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  220 (336)
T 2b25_A          176 ISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVV  220 (336)
T ss_dssp             TTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEES
T ss_pred             hHHcccccCCCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEeC
Confidence            111111122 2699998655444 347789999999999997654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=97.43  E-value=0.00041  Score=51.11  Aligned_cols=96  Identities=17%  Similarity=0.136  Sum_probs=64.3

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHHcCC----cEEe-cCCCHHHHHHhcCCccEEEEc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGA----DSFL-VSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~g~----~~v~-~~~~~~~~~~~~~~~d~vid~  113 (220)
                      ++++++||-+|+|. |..+..+++..| .+|+.++.+++..+.+.+....    ..+. +..+........+.||+|+..
T Consensus        72 ~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (230)
T 1fbn_A           72 IKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEEEC
T ss_pred             CCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEEEe
Confidence            67899999999986 888888998877 5999999998876666443321    1111 111111101112479999965


Q ss_pred             CCCc---c-cHHHHHhccccCCEEEEe
Q 027668          114 VSAV---H-PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       114 ~g~~---~-~~~~~~~~l~~~g~iv~~  136 (220)
                      ...+   . .+..+.+.|+++|.++..
T Consensus       151 ~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          151 VAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            5544   2 266778899999999986

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.43  E-value=0.00038  Score=54.11  Aligned_cols=93  Identities=13%  Similarity=0.185  Sum_probs=65.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHH-CCC-eEEEEeCCcccHHHHHHHcC---CcEEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVERLG---ADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~-~g~-~v~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      ....+++|+|+|.+|...++.+.. .+. +|.+.+++.++.+.+.++++   ....  ..+   ..+.. ++|+|+.|+.
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~--~~~---~~e~v-~aDvVi~aTp  196 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS--VQP---AEEAS-RCDVLVTTTP  196 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE--ECC---HHHHT-SSSEEEECCC
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE--ECC---HHHHh-CCCEEEEeeC
Confidence            566799999999999988876655 555 89999999988888877665   2222  222   33445 7999999997


Q ss_pred             CcccHHHHHhccccCCEEEEecCCC
Q 027668          116 AVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ....+- ....++++-.++.+|...
T Consensus       197 ~~~pv~-~~~~l~~G~~V~~ig~~~  220 (322)
T 1omo_A          197 SRKPVV-KAEWVEEGTHINAIGADG  220 (322)
T ss_dssp             CSSCCB-CGGGCCTTCEEEECSCCS
T ss_pred             CCCcee-cHHHcCCCeEEEECCCCC
Confidence            653221 125678888888887654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.41  E-value=0.0012  Score=51.09  Aligned_cols=90  Identities=20%  Similarity=0.110  Sum_probs=63.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHH-hcCCccEEEEcCCCccc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQA-AMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~-~~~~~d~vid~~g~~~~  119 (220)
                      .+|.|+|.|.+|...++.++..|.  +|++.++++++.+.+ .+.|.. ......     .+ ...+.|+||.|+.....
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a-~~~G~~~~~~~~~-----~~~~~~~aDvVilavp~~~~  107 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGTTSI-----AKVEDFSPDFVMLSSPVRTF  107 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEESCT-----TGGGGGCCSEEEECSCGGGH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHH-HHCCCcchhcCCH-----HHHhhccCCEEEEeCCHHHH
Confidence            689999999999999999999998  999999998887776 567752 222211     12 23478999999987632


Q ss_pred             ---HHHHHhccccCCEEEEecCC
Q 027668          120 ---LMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       120 ---~~~~~~~l~~~g~iv~~g~~  139 (220)
                         +......++++..++.++..
T Consensus       108 ~~vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          108 REIAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             HHHHHHHHHHSCTTCEEEECCSC
T ss_pred             HHHHHHHhhccCCCcEEEECCCC
Confidence               22334456667666666543

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.41  E-value=0.00037  Score=53.28  Aligned_cols=94  Identities=10%  Similarity=0.036  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc---E---EecCCCHHHHHHhcCCccEEEEcC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---S---FLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~---~---v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      -.+++++|+|+|++|.+++..+...| +|+++.++.++.+.+.++++..   .   .++..+   ..+..+++|++|+|+
T Consensus       126 l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~---~~~~~~~~DilVn~a  201 (287)
T 1nvt_A          126 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSG---LDVDLDGVDIIINAT  201 (287)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEEC---TTCCCTTCCEEEECS
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEee---HHHhhCCCCEEEECC
Confidence            35789999999999999999999999 9999999887776665554320   0   001111   112235799999999


Q ss_pred             CCcccHH-----H-HHhccccCCEEEEecC
Q 027668          115 SAVHPLM-----P-LIGLLKSQGKLVLLGA  138 (220)
Q Consensus       115 g~~~~~~-----~-~~~~l~~~g~iv~~g~  138 (220)
                      |....-.     . ....++++..++.+..
T Consensus       202 g~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y  231 (287)
T 1nvt_A          202 PIGMYPNIDVEPIVKAEKLREDMVVMDLIY  231 (287)
T ss_dssp             CTTCTTCCSSCCSSCSTTCCSSSEEEECCC
T ss_pred             CCCCCCCCCCCCCCCHHHcCCCCEEEEeee
Confidence            8653100     1 1345566666666654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=97.41  E-value=0.00033  Score=54.49  Aligned_cols=77  Identities=17%  Similarity=0.192  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-CcE-EecCCCHHHHHHhcC--CccEEEEcCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADS-FLVSRDQDEMQAAMG--TMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~~~-v~~~~~~~~~~~~~~--~~d~vid~~g  115 (220)
                      ..+.+|||.|+ |.+|..+++.+...|++|+++++.........+.+. ... ..|..+.+.+.+...  ++|+||.++|
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~   97 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAA   97 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCc
Confidence            35678999997 999999999999999999999986543221112222 222 234556666666655  8999999998


Q ss_pred             Cc
Q 027668          116 AV  117 (220)
Q Consensus       116 ~~  117 (220)
                      ..
T Consensus        98 ~~   99 (330)
T 2pzm_A           98 AY   99 (330)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.40  E-value=0.00026  Score=53.03  Aligned_cols=72  Identities=24%  Similarity=0.316  Sum_probs=50.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh------cCCccEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA------MGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~------~~~~d~vi  111 (220)
                      .++++||.|+ |++|.++++.+...|++|+++++..+   ...++++...   ..|-.+.+.++++      .+++|++|
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~---~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv   84 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE---DVVADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVV   84 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH---HHHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH---HHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            4688999997 99999999999999999999998654   3334555432   2344555444332      24899999


Q ss_pred             EcCCC
Q 027668          112 DTVSA  116 (220)
Q Consensus       112 d~~g~  116 (220)
                      +++|.
T Consensus        85 ~nAg~   89 (257)
T 3tl3_A           85 NCAGT   89 (257)
T ss_dssp             ECGGG
T ss_pred             ECCCC
Confidence            99984

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=97.40  E-value=0.00069  Score=53.06  Aligned_cols=88  Identities=15%  Similarity=0.250  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..+++.++.+|++|++.+++....+..   .|...+   .+   +.++....|+|+-++...+   
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~---~g~~~~---~~---l~ell~~sDvV~l~~Plt~~T~  242 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE---EGAIYH---DT---LDSLLGASDIFLIAAPGRPELK  242 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH---TTCEEC---SS---HHHHHHTCSEEEECSCCCGGGT
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh---cCCeEe---CC---HHHHHhhCCEEEEecCCCHHHH
Confidence            46899999999999999999999999999999886543322   254322   12   3334447899998887431   


Q ss_pred             -cH-HHHHhccccCCEEEEecC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~  138 (220)
                       .+ ...+..|+++..++.++.
T Consensus       243 ~li~~~~l~~mk~gailIN~aR  264 (345)
T 4g2n_A          243 GFLDHDRIAKIPEGAVVINISR  264 (345)
T ss_dssp             TCBCHHHHHHSCTTEEEEECSC
T ss_pred             HHhCHHHHhhCCCCcEEEECCC
Confidence             22 456777888888888764

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=97.39  E-value=0.0022  Score=54.16  Aligned_cols=98  Identities=17%  Similarity=0.288  Sum_probs=62.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc-ccHHHHHHHcCCcEEecCCCH-HH----HHH---hcCCccEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-SKKSEAVERLGADSFLVSRDQ-DE----MQA---AMGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~-~~~~~~~~~~g~~~v~~~~~~-~~----~~~---~~~~~d~vi  111 (220)
                      .|+++||.|+ +++|.++++.+...|++|++.++.. ++.....++.|...+....+. +.    +++   ..+++|++|
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDiLV  400 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDILV  400 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCEEE
Confidence            4678899997 8999999999999999999887532 222122234454433333333 21    222   235899999


Q ss_pred             EcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCC
Q 027668          112 DTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAP  139 (220)
Q Consensus       112 d~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~  139 (220)
                      +++|...                         ..+.++..|+  .+|+|+.+++.
T Consensus       401 nNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~  455 (604)
T 2et6_A          401 NNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITST  455 (604)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCh
Confidence            9998531                         1234555553  45899998764

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.39  E-value=0.0046  Score=48.33  Aligned_cols=130  Identities=15%  Similarity=0.137  Sum_probs=80.4

Q ss_pred             EEEEEcCchHHHHHHHHHHHC-CCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcC--CccEEEEcCCCcccH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAM-GVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSAVHPL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~-g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~d~vid~~g~~~~~  120 (220)
                      +|.|+|+|.+|...+..++.. +.+++ +.++++++.+.+.+++|.. ++  .+   ..++..  .+|+|+.|+......
T Consensus         6 rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~-~~--~~---~~~~l~~~~~D~V~i~tp~~~h~   79 (344)
T 3euw_A            6 RIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAE-AV--AS---PDEVFARDDIDGIVIGSPTSTHV   79 (344)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCE-EE--SS---HHHHTTCSCCCEEEECSCGGGHH
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCc-ee--CC---HHHHhcCCCCCEEEEeCCchhhH
Confidence            688999999999888877766 66777 5566666667777788843 33  22   333333  799999999887666


Q ss_pred             HHHHhccccCCEEEEecCCCCCcccC----cccc-ccCCc-EEEEeeccCHHHHHHHHHHHHhCCcce
Q 027668          121 MPLIGLLKSQGKLVLLGAPEKPLELP----AFPL-LTGEK-IVGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~~~~~~~~~----~~~~-~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~  182 (220)
                      ..+..+++.|.. +++.-+-. .+..    .... -.++. -..++.......++.+.+++.+|.+-.
T Consensus        80 ~~~~~al~~gk~-v~~EKP~~-~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~  145 (344)
T 3euw_A           80 DLITRAVERGIP-ALCEKPID-LDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVANQEIGN  145 (344)
T ss_dssp             HHHHHHHHTTCC-EEECSCSC-SCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHTTTTSS
T ss_pred             HHHHHHHHcCCc-EEEECCCC-CCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhcCCCCc
Confidence            677777776644 44443321 1110    0111 12233 233444433455778888888887643

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.38  E-value=0.00048  Score=52.04  Aligned_cols=77  Identities=21%  Similarity=0.292  Sum_probs=52.5

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-HHHHH---HHcCCcE-E--ecCCCHHHHHHh-------cC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAV---ERLGADS-F--LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-~~~~~---~~~g~~~-v--~~~~~~~~~~~~-------~~  105 (220)
                      -.++++||.|+ |++|..+++.+...|++|+++++++++ .+.+.   ++.+... +  .|..+.+.+.++       .+
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            35789999997 999999999999999999999995443 23222   2334322 2  244444433322       24


Q ss_pred             CccEEEEcCCCc
Q 027668          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~vid~~g~~  117 (220)
                      ++|++|+++|..
T Consensus       107 ~id~li~nAg~~  118 (271)
T 4iin_A          107 GLSYLVNNAGVV  118 (271)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CCCEEEECCCcC
Confidence            899999999863

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.38  E-value=0.00054  Score=53.47  Aligned_cols=87  Identities=23%  Similarity=0.298  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--  118 (220)
                      -.|.+|.|+|.|.+|..+++.++..|.+|++.+++.++ +.+ .++|...    .+.+   +.....|+|+.++....  
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~-~~~g~~~----~~l~---e~l~~aDiVil~vp~~~~t  214 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVE-KELKARY----MDID---ELLEKSDIVILALPLTRDT  214 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHH-HHHTEEE----CCHH---HHHHHCSEEEECCCCCTTT
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhh-hhcCcee----cCHH---HHHhhCCEEEEcCCCChHH
Confidence            35789999999999999999999999999999988765 333 4556432    1222   22235788888887652  


Q ss_pred             --cHH-HHHhccccCCEEEEec
Q 027668          119 --PLM-PLIGLLKSQGKLVLLG  137 (220)
Q Consensus       119 --~~~-~~~~~l~~~g~iv~~g  137 (220)
                        .+. ..+..++++ .++.++
T Consensus       215 ~~~i~~~~~~~mk~g-ilin~s  235 (333)
T 2d0i_A          215 YHIINEERVKKLEGK-YLVNIG  235 (333)
T ss_dssp             TTSBCHHHHHHTBTC-EEEECS
T ss_pred             HHHhCHHHHhhCCCC-EEEECC
Confidence              222 345667777 666665

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.38  E-value=0.0006  Score=52.90  Aligned_cols=75  Identities=23%  Similarity=0.288  Sum_probs=51.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC---------CcccHHHHHHH---cCCcEEecCCCHHHHHH------
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST---------SPSKKSEAVER---LGADSFLVSRDQDEMQA------  102 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~---------~~~~~~~~~~~---~g~~~v~~~~~~~~~~~------  102 (220)
                      .|+++||.|+ |++|..+++.+...|++|++.++         +.++.+.+.++   .+...+.|..+.+.+++      
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~   87 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   87 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence            5688999997 99999999999999999998754         44444433332   34444456555433222      


Q ss_pred             -hcCCccEEEEcCCC
Q 027668          103 -AMGTMDGIIDTVSA  116 (220)
Q Consensus       103 -~~~~~d~vid~~g~  116 (220)
                       ..+++|++|+++|.
T Consensus        88 ~~~g~iD~lVnnAG~  102 (319)
T 1gz6_A           88 DTFGRIDVVVNNAGI  102 (319)
T ss_dssp             HHTSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCC
Confidence             23489999999984

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=97.38  E-value=0.00025  Score=52.70  Aligned_cols=95  Identities=20%  Similarity=0.169  Sum_probs=60.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHH-CCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc-----CCccEEEEcC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKA-MGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-----GTMDGIIDTV  114 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~-----~~~d~vid~~  114 (220)
                      .++++||.|+ |++|.++++.+.. .|++|++.++.++....   +. .....|-.+.+.++++.     +++|++|+++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~~---~~-~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~nA   78 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSAE---NL-KFIKADLTKQQDITNVLDIIKNVSFDGIFLNA   78 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCCT---TE-EEEECCTTCHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccccc---cc-eEEecCcCCHHHHHHHHHHHHhCCCCEEEECC
Confidence            4678999997 9999999987776 77899988887652111   11 01123445555444332     2799999999


Q ss_pred             CCcc-------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          115 SAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       115 g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      |...                         ..+.++..++++|+++.+++..
T Consensus        79 g~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~  129 (244)
T 4e4y_A           79 GILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQ  129 (244)
T ss_dssp             CCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGG
T ss_pred             ccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHH
Confidence            8631                         1122344556678999887653

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=97.38  E-value=0.0018  Score=48.60  Aligned_cols=77  Identities=22%  Similarity=0.288  Sum_probs=51.9

Q ss_pred             CCCCEEEEEcC---chHHHHHHHHHHHCCCeEEEEeCCcccH-H----HHHHHcCCcEE---ecCCCHHHHHH-------
Q 027668           41 KPGMHVGVVGL---GGLGHVAVKFAKAMGVKVTVISTSPSKK-S----EAVERLGADSF---LVSRDQDEMQA-------  102 (220)
Q Consensus        41 ~~~~~vlI~G~---g~~G~~~~~~~~~~g~~v~~~~~~~~~~-~----~~~~~~g~~~v---~~~~~~~~~~~-------  102 (220)
                      -.++++||.|+   +++|..+++.+...|++|++++++.++. +    ++.+..+....   .|-.+.+.+++       
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVA   97 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence            35789999985   4999999999999999999998876543 2    22223354322   24444443332       


Q ss_pred             hcCCccEEEEcCCCc
Q 027668          103 AMGTMDGIIDTVSAV  117 (220)
Q Consensus       103 ~~~~~d~vid~~g~~  117 (220)
                      ..+++|++|+++|..
T Consensus        98 ~~g~id~li~nAg~~  112 (267)
T 3gdg_A           98 DFGQIDAFIANAGAT  112 (267)
T ss_dssp             HTSCCSEEEECCCCC
T ss_pred             HcCCCCEEEECCCcC
Confidence            234899999998853

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.38  E-value=0.00072  Score=52.25  Aligned_cols=90  Identities=13%  Similarity=0.153  Sum_probs=60.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHH--CCCeEEEEeC-Cccc-HHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEEcCCCc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKA--MGVKVTVIST-SPSK-KSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~--~g~~v~~~~~-~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~  117 (220)
                      -+|.|+|+|.+|...++.+..  -+.+++.+.. ++++ ...+.+++|....  ..+.+.+.+.+  .++|+||+|++..
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~--~~~~e~ll~~~~~~~iDvV~~atp~~   82 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT--YAGVEGLIKLPEFADIDFVFDATSAS   82 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE--SSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcc--cCCHHHHHhccCCCCCcEEEECCChH
Confidence            478999999999999888843  4666655544 4455 4555578887532  22223332221  3799999999976


Q ss_pred             ccHHHHHhcccc--CCEEEE
Q 027668          118 HPLMPLIGLLKS--QGKLVL  135 (220)
Q Consensus       118 ~~~~~~~~~l~~--~g~iv~  135 (220)
                      ...+.+..+++.  |.+++.
T Consensus        83 ~h~~~a~~al~a~~Gk~Vi~  102 (312)
T 1nvm_B           83 AHVQNEALLRQAKPGIRLID  102 (312)
T ss_dssp             HHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHHHHHHHHHhCCCCEEEE
Confidence            556677778877  777665

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.37  E-value=0.00059  Score=52.88  Aligned_cols=99  Identities=22%  Similarity=0.164  Sum_probs=66.3

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHH---cCCc-EEecCCCHHHHHHhcCCccEEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVER---LGAD-SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .++++++||-+|+|. |..+..+++..+  .+|+.++.+++..+.+.+.   .|.. ..+...+........+.||+|+.
T Consensus        72 ~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~  150 (317)
T 1dl5_A           72 GLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFV  150 (317)
T ss_dssp             TCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEE
T ss_pred             CCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEE
Confidence            478999999999986 878888887643  3699999998876665443   3432 11111221110011247999998


Q ss_pred             cCCCcccHHHHHhccccCCEEEEecC
Q 027668          113 TVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ..........+.+.|+++|+++..-.
T Consensus       151 ~~~~~~~~~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          151 TVGVDEVPETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             CSBBSCCCHHHHHHEEEEEEEEEEBC
T ss_pred             cCCHHHHHHHHHHhcCCCcEEEEEEC
Confidence            76665555778889999999987643

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=97.37  E-value=0.0003  Score=53.71  Aligned_cols=85  Identities=19%  Similarity=0.303  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..+++.++..|++|++.+++.++.+.      .. .  ..+   ..++....|+|+-++...+   
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------~~-~--~~~---l~ell~~aDiV~l~~P~t~~t~  188 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------DV-I--SES---PADLFRQSDFVLIAIPLTDKTR  188 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC------SE-E--CSS---HHHHHHHCSEEEECCCCCTTTT
T ss_pred             ecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc------cc-c--cCC---hHHHhhccCeEEEEeeccccch
Confidence            4789999999999999999999999999999988654321      11 1  112   2233346789998887422   


Q ss_pred             -cH-HHHHhccccCCEEEEecC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~  138 (220)
                       .+ ...+..|+++..++.++.
T Consensus       189 ~li~~~~l~~mk~gailIN~aR  210 (290)
T 3gvx_A          189 GMVNSRLLANARKNLTIVNVAR  210 (290)
T ss_dssp             TCBSHHHHTTCCTTCEEEECSC
T ss_pred             hhhhHHHHhhhhcCceEEEeeh
Confidence             12 456778888888888874

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.37  E-value=0.00034  Score=54.52  Aligned_cols=44  Identities=18%  Similarity=0.067  Sum_probs=36.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEe-CCcccHHHHHHH
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVIS-TSPSKKSEAVER   85 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~-~~~~~~~~~~~~   85 (220)
                      .++++||.|+ |++|.++++.+...|++|++++ ++.++.+.+.++
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~   90 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT   90 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence            4688999997 9999999999999999999999 887766555443

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=97.37  E-value=0.00052  Score=49.75  Aligned_cols=101  Identities=13%  Similarity=0.034  Sum_probs=65.9

Q ss_pred             HhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-cEEecCCCHHHHHHhcCCccEEEEc
Q 027668           35 RFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        35 ~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      ..+..+.++.+||-+|+|. |..+..+++. |.+++.++.+++..+.+ ++.+. ...+...+.... ...+.||+|+..
T Consensus        39 ~~l~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~~v~~~D~s~~~~~~a-~~~~~~~~~~~~~d~~~~-~~~~~~D~v~~~  114 (218)
T 3ou2_A           39 ERLRAGNIRGDVLELASGT-GYWTRHLSGL-ADRVTALDGSAEMIAEA-GRHGLDNVEFRQQDLFDW-TPDRQWDAVFFA  114 (218)
T ss_dssp             HHHTTTTSCSEEEEESCTT-SHHHHHHHHH-SSEEEEEESCHHHHHHH-GGGCCTTEEEEECCTTSC-CCSSCEEEEEEE
T ss_pred             HHHhcCCCCCeEEEECCCC-CHHHHHHHhc-CCeEEEEeCCHHHHHHH-HhcCCCCeEEEecccccC-CCCCceeEEEEe
Confidence            3444467888999999875 7777777777 88999999998877666 44552 211111121111 112379999865


Q ss_pred             CCC--------cccHHHHHhccccCCEEEEecCC
Q 027668          114 VSA--------VHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       114 ~g~--------~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ..-        ...+..+.+.|+++|.++.....
T Consensus       115 ~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          115 HWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             chhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            432        12356677899999999887543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=97.36  E-value=0.0014  Score=51.25  Aligned_cols=76  Identities=13%  Similarity=0.072  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc----HHHHHHHc------CCcEE-ecCCCHHHHHHhcCCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK----KSEAVERL------GADSF-LVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~----~~~~~~~~------g~~~v-~~~~~~~~~~~~~~~~d~  109 (220)
                      .+.+|||.|+ |.+|..+++.+...|.+|++++++...    ...+.+.+      +...+ .|..+.+.+.+...++|+
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  105 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY  105 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCE
Confidence            3578999997 999999999999999999999987542    22222222      22222 245566667777779999


Q ss_pred             EEEcCCCc
Q 027668          110 IIDTVSAV  117 (220)
Q Consensus       110 vid~~g~~  117 (220)
                      ||.+++..
T Consensus       106 vih~A~~~  113 (352)
T 1sb8_A          106 VLHQAALG  113 (352)
T ss_dssp             EEECCSCC
T ss_pred             EEECCccc
Confidence            99999853

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.36  E-value=0.0058  Score=48.01  Aligned_cols=134  Identities=15%  Similarity=0.121  Sum_probs=81.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHHC-CCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAM-GVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~-g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  121 (220)
                      -+|.|+|+|.+|...+..++.. +++++ +.++++++.+.+.+++|+..   +.+.+.+-+ ...+|+|+.|+.......
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~---~~~~~~~l~-~~~~D~V~i~tp~~~h~~   81 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAG---DATMEALLA-REDVEMVIITVPNDKHAE   81 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCC---CSSHHHHHH-CSSCCEEEECSCTTSHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCC---cCCHHHHhc-CCCCCEEEEeCChHHHHH
Confidence            4789999999999888877766 67766 45666667777777888753   333332211 137999999999876677


Q ss_pred             HHHhccccCCEEEEecCCCCCcccCcccc----ccCCc-EEEEeeccCHHHHHHHHHHHHhCCcce
Q 027668          122 PLIGLLKSQGKLVLLGAPEKPLELPAFPL----LTGEK-IVGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       122 ~~~~~l~~~g~iv~~g~~~~~~~~~~~~~----~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~  182 (220)
                      .+..+++.|-. |++.-+-....-....+    -.++. ...++.......++.+.+++++|.+-.
T Consensus        82 ~~~~al~~gk~-vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~  146 (354)
T 3db2_A           82 VIEQCARSGKH-IYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDTKEIGE  146 (354)
T ss_dssp             HHHHHHHTTCE-EEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHHTTTTCC
T ss_pred             HHHHHHHcCCE-EEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHhcCCCCC
Confidence            77777776644 44443321100001111    11222 334444444455777788888887643

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.36  E-value=0.0013  Score=50.72  Aligned_cols=91  Identities=12%  Similarity=0.192  Sum_probs=62.9

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc------ccHHHHH--HHcCCcEE-ecCCCHHHHHHhcCCccEEEEc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP------SKKSEAV--ERLGADSF-LVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~------~~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      .+|+|.|+ |.+|..+++.+...|.+|++++++.      ++.+.+.  ...++..+ .|..+.+.+.+...++|+||.+
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~~   84 (321)
T 3c1o_A            5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVISA   84 (321)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            56999997 9999999999999999999999985      2222221  23355433 3566677777777899999999


Q ss_pred             CCCcc--cHHHHHhccccC---CEEE
Q 027668          114 VSAVH--PLMPLIGLLKSQ---GKLV  134 (220)
Q Consensus       114 ~g~~~--~~~~~~~~l~~~---g~iv  134 (220)
                      ++...  .....++.++..   ++++
T Consensus        85 a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           85 LPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             CCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             CCccchhhHHHHHHHHHHhCCccEEe
Confidence            98642  233445544433   4676

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=97.35  E-value=0.00024  Score=53.57  Aligned_cols=71  Identities=20%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      +++|||.|+ |.+|..+++.+...|++|+++++++.+..    ..+... ..|-.+.+.+.+...++|++|.++|..
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~~   75 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----GPNEECVQCDLADANAVNAMVAGCDGIVHLGGIS   75 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCCc
Confidence            467999997 99999999999999999999999876532    112222 235566777877778999999998763

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.35  E-value=0.0016  Score=50.06  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=52.3

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .+|||.|+ |.+|..+++.+...|.+|+++++++.... + +  +...+ .|.. .+.+.+...++|+||.+++..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~-~--~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~   73 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-I-N--DYEYRVSDYT-LEDLINQLNDVDAVVHLAATR   73 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------CCEEEECCCC-HHHHHHHTTTCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-C-C--ceEEEEcccc-HHHHHHhhcCCCEEEEccccC
Confidence            68999997 99999999999999999999999854433 3 2  44433 3455 677777778999999998764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=97.34  E-value=0.00035  Score=53.94  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=66.4

Q ss_pred             HhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccE
Q 027668           35 RFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        35 ~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~  109 (220)
                      .....++++++||-+|+|. |..+..+++..|++|+.++.+++..+.+.+.   .|..  ..+...+........+.||+
T Consensus       110 ~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  188 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTA  188 (312)
T ss_dssp             TTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEE
T ss_pred             HHhccCCCCCEEEEecCCC-CHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeE
Confidence            3334368899999999875 7778888887789999999998876655332   3321  11111111111101137999


Q ss_pred             EEEcCC-----CcccHHHHHhccccCCEEEEecC
Q 027668          110 IIDTVS-----AVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       110 vid~~g-----~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      |+....     ....+..+.+.|++||+++....
T Consensus       189 V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          189 SWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            986422     12346678889999999998753

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.34  E-value=0.0011  Score=50.35  Aligned_cols=89  Identities=19%  Similarity=0.137  Sum_probs=61.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHhcC-CccEEEEcCCCccc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMG-TMDGIIDTVSAVHP  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~-~~d~vid~~g~~~~  119 (220)
                      .+|.|+|+|.+|...++.++..|.  +|+++++++++.+.+ +++|.. ....  +.   .+... +.|+||.|+.....
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~-~~~g~~~~~~~--~~---~~~~~~~aDvVilavp~~~~   75 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGTT--SI---AKVEDFSPDFVMLSSPVRTF   75 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEES--CG---GGGGGTCCSEEEECSCHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH-HHCCCcccccC--CH---HHHhcCCCCEEEEcCCHHHH
Confidence            368999999999999999999998  899999988877665 567753 2221  11   12335 78999999987632


Q ss_pred             ---HHHHHhccccCCEEEEecC
Q 027668          120 ---LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ---~~~~~~~l~~~g~iv~~g~  138 (220)
                         +......++++..++.++.
T Consensus        76 ~~v~~~l~~~l~~~~iv~~~~~   97 (281)
T 2g5c_A           76 REIAKKLSYILSEDATVTDQGS   97 (281)
T ss_dssp             HHHHHHHHHHSCTTCEEEECCS
T ss_pred             HHHHHHHHhhCCCCcEEEECCC
Confidence               2223334666776666554

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.34  E-value=0.00066  Score=50.99  Aligned_cols=75  Identities=15%  Similarity=0.128  Sum_probs=51.4

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCC---CeEEEEeCCcccHHHHHHHc---CC--cE-EecCCCHHHHHHhc------
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMG---VKVTVISTSPSKKSEAVERL---GA--DS-FLVSRDQDEMQAAM------  104 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g---~~v~~~~~~~~~~~~~~~~~---g~--~~-v~~~~~~~~~~~~~------  104 (220)
                      .+++++||.|+ |.+|..+++.+...|   ++|++++++.++.+.+ +++   +.  .. ..|-.+.+.++++.      
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            45678999997 999999999999999   8999999987754433 222   22  21 12444444333322      


Q ss_pred             -C--CccEEEEcCCC
Q 027668          105 -G--TMDGIIDTVSA  116 (220)
Q Consensus       105 -~--~~d~vid~~g~  116 (220)
                       +  ++|++|.++|.
T Consensus        98 ~g~~~id~li~~Ag~  112 (267)
T 1sny_A           98 TKDQGLNVLFNNAGI  112 (267)
T ss_dssp             HGGGCCSEEEECCCC
T ss_pred             cCCCCccEEEECCCc
Confidence             2  69999999985

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.34  E-value=0.0004  Score=51.25  Aligned_cols=99  Identities=15%  Similarity=0.113  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHHhc-----CC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQAAM-----GT  106 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~~~-----~~  106 (220)
                      ..++++||-+|+| .|..++.+++..  +.+++.++.+++..+.+.+.+   |..   .++..+..+.+.++.     +.
T Consensus        70 ~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           70 LTGAKQVLEIGVF-RGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             HHTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             hcCCCEEEEecCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            3567899999988 688888999887  469999999988766654332   431   222222233333332     57


Q ss_pred             ccEEEEcCCCc---ccHHHHHhccccCCEEEEecCC
Q 027668          107 MDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~vid~~g~~---~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ||+||-.....   ..+..+.+.|++||.++.-...
T Consensus       149 fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  184 (232)
T 3cbg_A          149 FDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVL  184 (232)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            99998443322   2366788999999999986543

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=97.33  E-value=0.002  Score=52.51  Aligned_cols=76  Identities=17%  Similarity=0.305  Sum_probs=52.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc--cHHHHHHHcCCcEE-ecCCCHHHHH-------HhcCC-ccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS--KKSEAVERLGADSF-LVSRDQDEMQ-------AAMGT-MDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~--~~~~~~~~~g~~~v-~~~~~~~~~~-------~~~~~-~d~  109 (220)
                      +++++||.|+ |++|..+++.+...|++|++++++..  ......++.+...+ .|-.+.+.++       +..++ +|+
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id~  291 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVDI  291 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCSE
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCceE
Confidence            5788999987 99999999999999999999988643  33344455565432 2444433322       22234 999


Q ss_pred             EEEcCCCc
Q 027668          110 IIDTVSAV  117 (220)
Q Consensus       110 vid~~g~~  117 (220)
                      +|+++|..
T Consensus       292 lV~nAGv~  299 (454)
T 3u0b_A          292 LVNNAGIT  299 (454)
T ss_dssp             EEECCCCC
T ss_pred             EEECCccc
Confidence            99999864

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.33  E-value=0.00087  Score=50.87  Aligned_cols=96  Identities=21%  Similarity=0.123  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHc-----CC----cEEecCCCHHHHHHhcCCccEE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL-----GA----DSFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~-----g~----~~v~~~~~~~~~~~~~~~~d~v  110 (220)
                      ..+.+||++|+|. |..+..+++..+. +|++++.+++-.+.+.+.+     +.    -.++..+-.+.+....+.||+|
T Consensus        74 ~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~I  152 (275)
T 1iy9_A           74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (275)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCCCEEEEECCch-HHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEE
Confidence            3568999999864 6666677776664 9999999988766665444     11    1233333334444333489999


Q ss_pred             EEcCCC----------cccHHHHHhccccCCEEEEec
Q 027668          111 IDTVSA----------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 id~~g~----------~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      |-....          ...++.+.+.|+++|.++...
T Consensus       153 i~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            854322          224677888999999998763

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.32  E-value=0.00069  Score=50.01  Aligned_cols=94  Identities=11%  Similarity=0.094  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHh-cCCccEEEEcCCCcc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAA-MGTMDGIIDTVSAVH  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~-~~~~d~vid~~g~~~  118 (220)
                      ...++++|+|+|.+|..+++.+...|. |+++++++++.+.+ + .|...+. +..+.+.+++. ..++|.+|-+++...
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~-~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~   83 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVL-R-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS   83 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHH-H-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHH-h-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH
Confidence            456789999999999999999998898 99998888776666 3 5655443 44455555554 458999999998763


Q ss_pred             cHH---HHHhccccCCEEEEec
Q 027668          119 PLM---PLIGLLKSQGKLVLLG  137 (220)
Q Consensus       119 ~~~---~~~~~l~~~g~iv~~g  137 (220)
                      .-.   ...+.+.+..+++.-.
T Consensus        84 ~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           84 ETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             HHHHHHHHHHHHCSSSEEEEEC
T ss_pred             HHHHHHHHHHHHCCCCeEEEEE
Confidence            211   2333445554665543

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.32  E-value=0.00058  Score=52.11  Aligned_cols=87  Identities=20%  Similarity=0.201  Sum_probs=60.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLI  124 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~  124 (220)
                      +|.|+|.|.+|...++.+...|.+|++.++++++.+.+. +.|....   .+.+   +...+.|+||.|+..+..+...+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~---~~~~---~~~~~advvi~~v~~~~~~~~v~   75 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLV-ALGARQA---SSPA---EVCAACDITIAMLADPAAAREVC   75 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHH-HHTCEEC---SCHH---HHHHHCSEEEECCSSHHHHHHHH
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH-HCCCeec---CCHH---HHHHcCCEEEEEcCCHHHHHHHH
Confidence            588999999999999998888999999999998887774 4465421   1221   22235799999998763344443


Q ss_pred             -------hccccCCEEEEecC
Q 027668          125 -------GLLKSQGKLVLLGA  138 (220)
Q Consensus       125 -------~~l~~~g~iv~~g~  138 (220)
                             ..++++..++..+.
T Consensus        76 ~~~~~l~~~l~~g~~vv~~st   96 (287)
T 3pdu_A           76 FGANGVLEGIGGGRGYIDMST   96 (287)
T ss_dssp             HSTTCGGGTCCTTCEEEECSC
T ss_pred             cCchhhhhcccCCCEEEECCC
Confidence                   34455666665544

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.31  E-value=0.0023  Score=49.48  Aligned_cols=93  Identities=15%  Similarity=0.208  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHH-CCC-eEEEEeCCcccHHHHHHHcCC-cEEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKA-MGV-KVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~-~g~-~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      ....++.|+|+|.+|...++.+.. .|. +|.+.++++++.+.+.++++. -.+  ..+   ..+...+.|+|+.|+...
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~--~~~---~~e~v~~aDiVi~atp~~  207 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRV--CSS---VQEAVAGADVIITVTLAT  207 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEE--CSS---HHHHHTTCSEEEECCCCS
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEE--eCC---HHHHHhcCCEEEEEeCCC
Confidence            456789999999999988887655 487 899999999888888777772 112  122   233345789999998753


Q ss_pred             cc-HHHHHhccccCCEEEEecCCC
Q 027668          118 HP-LMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       118 ~~-~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .. +..  ..++++..++.+|...
T Consensus       208 ~~v~~~--~~l~~g~~vi~~g~~~  229 (312)
T 2i99_A          208 EPILFG--EWVKPGAHINAVGASR  229 (312)
T ss_dssp             SCCBCG--GGSCTTCEEEECCCCS
T ss_pred             CcccCH--HHcCCCcEEEeCCCCC
Confidence            21 211  4677777777776543

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=97.31  E-value=0.0011  Score=51.46  Aligned_cols=75  Identities=17%  Similarity=0.180  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc-----ccHHHHH---HHcCCcE---EecCCCHHHHHHh------
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP-----SKKSEAV---ERLGADS---FLVSRDQDEMQAA------  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~-----~~~~~~~---~~~g~~~---v~~~~~~~~~~~~------  103 (220)
                      .++++||.|+ |++|..+++.+...|++|+++.++.     ++.+.+.   +..+...   ..|-.+.+.+.+.      
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            3578999997 9999999999999999999887752     2223322   2234321   2344555444332      


Q ss_pred             -cCCccEEEEcCCC
Q 027668          104 -MGTMDGIIDTVSA  116 (220)
Q Consensus       104 -~~~~d~vid~~g~  116 (220)
                       .+++|++|+++|.
T Consensus        84 ~~g~iD~lVnnAG~   97 (324)
T 3u9l_A           84 EDGRIDVLIHNAGH   97 (324)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence             2489999999985

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=97.31  E-value=0.0009  Score=50.24  Aligned_cols=74  Identities=19%  Similarity=0.188  Sum_probs=50.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccH-HHHHHH---cCCc---EEecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK-SEAVER---LGAD---SFLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~~---~g~~---~v~~~~~~~~~~~~-------~~~  106 (220)
                      .++++||.|+ |++|..+++.+...|++|+++++.++.. +.+.+.   .+..   ...|-.+.+.++++       .++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   85 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK   85 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4578999997 9999999999999999999987765532 233222   2221   12345555444332       248


Q ss_pred             ccEEEEcCC
Q 027668          107 MDGIIDTVS  115 (220)
Q Consensus       107 ~d~vid~~g  115 (220)
                      +|++|+++|
T Consensus        86 id~lv~~Ag   94 (264)
T 3i4f_A           86 IDFLINNAG   94 (264)
T ss_dssp             CCEEECCCC
T ss_pred             CCEEEECCc
Confidence            999999999

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=97.30  E-value=0.00076  Score=52.90  Aligned_cols=75  Identities=21%  Similarity=0.197  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCcEE-ecCCCHHHHHHhcC--CccEEEEc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADSF-LVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~~v-~~~~~~~~~~~~~~--~~d~vid~  113 (220)
                      .+.+|||.|+ |.+|..+++.+...|++|++++++.++...+.+.+    +...+ .|..+.+.+.+...  ++|+||.+
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   87 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   87 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence            3578999997 99999999999999999999999876543332322    23322 34455666655544  58999999


Q ss_pred             CCC
Q 027668          114 VSA  116 (220)
Q Consensus       114 ~g~  116 (220)
                      ++.
T Consensus        88 A~~   90 (357)
T 1rkx_A           88 AAQ   90 (357)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            984

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.30  E-value=0.0012  Score=51.12  Aligned_cols=77  Identities=25%  Similarity=0.340  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC----------cccHHHHHH---HcCCcEEe---cCCCHHHHHHh
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS----------PSKKSEAVE---RLGADSFL---VSRDQDEMQAA  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~----------~~~~~~~~~---~~g~~~v~---~~~~~~~~~~~  103 (220)
                      -.|+++||.|+ |++|.++++.+...|++|++++++          .++.+.+.+   ..|....+   |-.+.+.++++
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~  104 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGL  104 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence            35789999997 999999999999999999999876          444444333   33433222   33444443332


Q ss_pred             -------cCCccEEEEcCCCc
Q 027668          104 -------MGTMDGIIDTVSAV  117 (220)
Q Consensus       104 -------~~~~d~vid~~g~~  117 (220)
                             .+++|++|+++|..
T Consensus       105 ~~~~~~~~g~iD~lv~nAg~~  125 (322)
T 3qlj_A          105 IQTAVETFGGLDVLVNNAGIV  125 (322)
T ss_dssp             HHHHHHHHSCCCEEECCCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCCC
Confidence                   24899999999863

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=97.30  E-value=0.00055  Score=49.43  Aligned_cols=93  Identities=15%  Similarity=0.104  Sum_probs=59.7

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC------------------cEEe-cCCCHHHH
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA------------------DSFL-VSRDQDEM  100 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~------------------~~v~-~~~~~~~~  100 (220)
                      +.++.+||.+|||. |..+..+++. |++|+.++.+++..+.+.++.+.                  ..+. |..+... 
T Consensus        20 ~~~~~~vLD~GCG~-G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~-   96 (203)
T 1pjz_A           20 VVPGARVLVPLCGK-SQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTA-   96 (203)
T ss_dssp             CCTTCEEEETTTCC-SHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTH-
T ss_pred             cCCCCEEEEeCCCC-cHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCc-
Confidence            57889999999874 7777777775 89999999999888777555331                  1111 1111111 


Q ss_pred             HHhcCCccEEEEcCCCc--------ccHHHHHhccccCCEEEEe
Q 027668          101 QAAMGTMDGIIDTVSAV--------HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~--------~~~~~~~~~l~~~g~iv~~  136 (220)
                       ...+.||+|++...-.        ..++.+.+.|++||+++++
T Consensus        97 -~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           97 -RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             -HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             -ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence             0013699999743321        1245677889999994433

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=97.29  E-value=0.0062  Score=49.65  Aligned_cols=95  Identities=9%  Similarity=-0.055  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      .|.+|||+|+|.+|...++.+...|++|++++.... ..+.+.++.+...+......+.    ..++|+||-+.+.+..-
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~----l~~~~lVi~at~~~~~n   86 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETL----LDSCWLAIAATDDDTVN   86 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGG----GTTCSEEEECCSCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccc----cCCccEEEEcCCCHHHH
Confidence            478999999999999999999999999999987543 2223322223443322222222    24899999999887533


Q ss_pred             HHHHhccccCCEEEEecCCC
Q 027668          121 MPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .......+..|..+..-...
T Consensus        87 ~~i~~~a~~~~i~vn~~d~~  106 (457)
T 1pjq_A           87 QRVSDAAESRRIFCNVVDAP  106 (457)
T ss_dssp             HHHHHHHHHTTCEEEETTCT
T ss_pred             HHHHHHHHHcCCEEEECCCc
Confidence            44555666778777654433

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=97.29  E-value=0.001  Score=52.74  Aligned_cols=75  Identities=9%  Similarity=0.117  Sum_probs=55.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .+.+|||.|+ |.+|..+++.+...|++|++++++..+.... ...+...+ .|..+.+.+.+...++|+||.+++..
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~  104 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-DMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADM  104 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-GGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh-ccCCceEEECCCCCHHHHHHHhCCCCEEEECceec
Confidence            3568999997 9999999999999999999999886543222 12233332 35556667777777999999998753

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.29  E-value=0.0057  Score=48.03  Aligned_cols=134  Identities=16%  Similarity=0.060  Sum_probs=82.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHHC--CCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAM--GVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~--g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -+|.|+|+|.+|...+..++..  +++++ +.++++++.+.+.+++|+ .++  .+.+.+-+ ...+|+|+.|+......
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~-~~~--~~~~~ll~-~~~~D~V~i~tp~~~h~   89 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGA-RGH--ASLTDMLA-QTDADIVILTTPSGLHP   89 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCC-EEE--SCHHHHHH-HCCCSEEEECSCGGGHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCC-cee--CCHHHHhc-CCCCCEEEECCCcHHHH
Confidence            4789999999998888877766  67766 556666677777778887 333  23222211 13799999999987666


Q ss_pred             HHHHhccccCCEEEEecCCCCCcccC-cccc----ccCCcEE-EEeeccCHHHHHHHHHHHHhCCccee
Q 027668          121 MPLIGLLKSQGKLVLLGAPEKPLELP-AFPL----LTGEKIV-GGSLIGGLKETQEMIDFAAKHNIRAD  183 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~~~~~~~~~-~~~~----~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (220)
                      ..+..+++.|. -+++.-+-. .+.. ...+    -.++..+ .++.......++.+.+++++|.+-..
T Consensus        90 ~~~~~al~~gk-~v~~EKP~a-~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~i  156 (354)
T 3q2i_A           90 TQSIECSEAGF-HVMTEKPMA-TRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQEKRFGRI  156 (354)
T ss_dssp             HHHHHHHHTTC-EEEECSSSC-SSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTTCSE
T ss_pred             HHHHHHHHCCC-CEEEeCCCc-CCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHhcCCCCce
Confidence            67777777654 445543321 1110 1111    1223333 44444333467888888888877543

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.28  E-value=0.0024  Score=47.57  Aligned_cols=97  Identities=16%  Similarity=0.132  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHH---HcCCc---EEecCCCHHHHHHh------cCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAA------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~------~~~  106 (220)
                      .++++||-+|+|. |..++.+++.+  +.+++.++.+++..+.+.+   +.|..   .++..+..+.+...      .+.
T Consensus        78 ~~~~~VLeiG~G~-G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           78 INAKNTMEIGVYT-GYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             TTCCEEEEECCGG-GHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             hCcCEEEEeCCCc-CHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            5678999999874 77788888876  5799999999886655543   33431   22222223333333      357


Q ss_pred             ccEEEEcCCCc---ccHHHHHhccccCCEEEEecC
Q 027668          107 MDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       107 ~d~vid~~g~~---~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ||+||-.....   ..+..+.+.|++||.++.-..
T Consensus       157 fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~  191 (247)
T 1sui_A          157 YDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNT  191 (247)
T ss_dssp             BSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECT
T ss_pred             EEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            99998544322   235678889999999987544

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.28  E-value=0.00074  Score=50.55  Aligned_cols=69  Identities=19%  Similarity=0.166  Sum_probs=50.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .++++||.|+ |.+|.++++.+...|++|++++++.++.+.      ... ..|-.+.+.+++.       .+++|++|+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~------~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv~   93 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG------FLAVKCDITDTEQVEQAYKEIEETHGPVEVLIA   93 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT------SEEEECCTTSHHHHHHHHHHHHHHTCSCSEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhcc------ceEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            4688999997 999999999999999999999998765432      221 2345555444322       247899999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus        94 nAg~   97 (253)
T 2nm0_A           94 NAGV   97 (253)
T ss_dssp             ECSC
T ss_pred             CCCC
Confidence            9875

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.28  E-value=0.00046  Score=50.45  Aligned_cols=99  Identities=15%  Similarity=0.081  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHH---cCCc---EEecCCCHHHHHHhc-----CC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQAAM-----GT  106 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~~~-----~~  106 (220)
                      ..++.+||-+|+|. |..+..+++.+  +.+++.++.+++..+.+.+.   .|..   .++..+..+......     +.
T Consensus        62 ~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (225)
T 3tr6_A           62 LMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQ  140 (225)
T ss_dssp             HHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred             hhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence            35778999999875 88888888876  46999999998866655443   3432   222222223443333     57


Q ss_pred             ccEEEEcCCCc---ccHHHHHhccccCCEEEEecCC
Q 027668          107 MDGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~vid~~g~~---~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ||+||-.....   ..+..+.+.|++||.++.-...
T Consensus       141 fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  176 (225)
T 3tr6_A          141 YDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVL  176 (225)
T ss_dssp             EEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            99998544322   2356778899999999876543

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.28  E-value=0.0007  Score=52.86  Aligned_cols=87  Identities=22%  Similarity=0.232  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..+++.++.+|++|++.+++.++.  + +++ +..+   .+   ..++....|+|+.++....   
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-~~~~---~~---l~ell~~aDvV~l~~p~~~~t~  214 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-GYYV---DS---LDDLYKQADVISLHVPDVPANV  214 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-TCBC---SC---HHHHHHHCSEEEECSCCCGGGT
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-Ceec---CC---HHHHHhhCCEEEEcCCCcHHHH
Confidence            56899999999999999999999999999999887643  2 332 3211   12   2233346899999887542   


Q ss_pred             -cH-HHHHhccccCCEEEEecC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~  138 (220)
                       .+ ...+..+++++.++.++.
T Consensus       215 ~li~~~~l~~mk~ga~lIn~ar  236 (333)
T 1j4a_A          215 HMINDESIAKMKQDVVIVNVSR  236 (333)
T ss_dssp             TCBSHHHHHHSCTTEEEEECSC
T ss_pred             HHHhHHHHhhCCCCcEEEECCC
Confidence             12 346678888888888875

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.28  E-value=0.00052  Score=53.40  Aligned_cols=76  Identities=17%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-CCcE-EecCCCHHHHHHhcCC--ccEEEEcCCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-GADS-FLVSRDQDEMQAAMGT--MDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-g~~~-v~~~~~~~~~~~~~~~--~d~vid~~g~  116 (220)
                      .+.+|||.|+ |.+|..+++.+...|.+|+++++.........+.+ +... ..|..+.+.+.++..+  +|+||.+++.
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~~   99 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAAS   99 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECcee
Confidence            4578999997 99999999999999999999998754322111112 2222 2345556666655544  9999999886


Q ss_pred             c
Q 027668          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      .
T Consensus       100 ~  100 (333)
T 2q1w_A          100 Y  100 (333)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.27  E-value=0.0049  Score=48.27  Aligned_cols=133  Identities=15%  Similarity=0.115  Sum_probs=82.1

Q ss_pred             EEEEEcCchHHHH-HHHHHHHC-CCeEEEE-eCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027668           45 HVGVVGLGGLGHV-AVKFAKAM-GVKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        45 ~vlI~G~g~~G~~-~~~~~~~~-g~~v~~~-~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  121 (220)
                      ++-|+|+|.+|.. .+..++.. +++++++ ++++++.+.+++++|...++.  +.+.+-+ ...+|+|+-|+......+
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~--d~~ell~-~~~iDaV~I~tP~~~H~~  101 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFG--SYEEMLA-SDVIDAVYIPLPTSQHIE  101 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEES--SHHHHHH-CSSCSEEEECSCGGGHHH
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeC--CHHHHhc-CCCCCEEEEeCCCchhHH
Confidence            6889999999975 45555554 6788755 455667778888999876653  3222211 137999999998876677


Q ss_pred             HHHhccccCCEEEEecCCCCCcccCcccc----ccCCcE-EEEeeccCHHHHHHHHHHHHhCCcc
Q 027668          122 PLIGLLKSQGKLVLLGAPEKPLELPAFPL----LTGEKI-VGGSLIGGLKETQEMIDFAAKHNIR  181 (220)
Q Consensus       122 ~~~~~l~~~g~iv~~g~~~~~~~~~~~~~----~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~  181 (220)
                      .+..+++.| +=|++.-+-....-....+    -.+++. ..+........++.+.+++++|.|=
T Consensus       102 ~~~~al~aG-khVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~G~iG  165 (350)
T 4had_A          102 WSIKAADAG-KHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDEGAIG  165 (350)
T ss_dssp             HHHHHHHTT-CEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTTS
T ss_pred             HHHHHHhcC-CEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhcCCCC
Confidence            788888754 5566654322111111111    112333 3444443345578888888888764

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=97.27  E-value=0.0012  Score=49.41  Aligned_cols=75  Identities=15%  Similarity=0.095  Sum_probs=52.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHH---CCCeEEEEeCCcccHHHHHHHc-----CCcE---EecCCCHHHHHHhc-----
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKA---MGVKVTVISTSPSKKSEAVERL-----GADS---FLVSRDQDEMQAAM-----  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~---~g~~v~~~~~~~~~~~~~~~~~-----g~~~---v~~~~~~~~~~~~~-----  104 (220)
                      .++++||.|+ |++|.++++.+..   .|++|+++++++++.+.+.+++     +...   ..|-.+.+.++++.     
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            4578899997 9999999998887   8999999999987766654443     3221   13445554433221     


Q ss_pred             ----CCcc--EEEEcCCC
Q 027668          105 ----GTMD--GIIDTVSA  116 (220)
Q Consensus       105 ----~~~d--~vid~~g~  116 (220)
                          +++|  ++|+++|.
T Consensus        85 ~~~~g~~d~~~lvnnAg~  102 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAAT  102 (259)
T ss_dssp             SCCCTTCCEEEEEECCCC
T ss_pred             ccccccCCccEEEECCcc
Confidence                3578  99999874

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.26  E-value=0.0013  Score=51.20  Aligned_cols=73  Identities=11%  Similarity=0.016  Sum_probs=50.2

Q ss_pred             EEEEEcC-chHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHcCCcEE-ecCCC-HHHHHHhcCCccEEEEcCCCc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSF-LVSRD-QDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~-~~~~~~~~~~~d~vid~~g~~  117 (220)
                      +|||.|+ |.+|..+++.+... |++|++++++.++.+.+....+...+ .|..+ .+.+.+...++|+||.+++..
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~~~   78 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIA   78 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEccccc
Confidence            6899997 99999999988887 89999999987654433111122322 23333 234555555899999998753

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.26  E-value=0.00078  Score=50.41  Aligned_cols=76  Identities=21%  Similarity=0.375  Sum_probs=48.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCc-------------------ccHHHHHH---HcC--Cc-EEecC-C
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP-------------------SKKSEAVE---RLG--AD-SFLVS-R   95 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~-------------------~~~~~~~~---~~g--~~-~v~~~-~   95 (220)
                      +.+|+|+|+|++|..++..+...|. ++.+++.+.                   .|.+.+++   +++  .. ..+.. -
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~  107 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRL  107 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCC
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            4789999999999999999999999 777776542                   22222222   222  11 11211 1


Q ss_pred             CHHHHHHhcCCccEEEEcCCCcc
Q 027668           96 DQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        96 ~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      ..+...++..++|+||+|+.+..
T Consensus       108 ~~~~~~~~~~~~DvVi~~~d~~~  130 (251)
T 1zud_1          108 TGEALKDAVARADVVLDCTDNMA  130 (251)
T ss_dssp             CHHHHHHHHHHCSEEEECCSSHH
T ss_pred             CHHHHHHHHhcCCEEEECCCCHH
Confidence            23344444557999999998764

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.25  E-value=0.0012  Score=51.08  Aligned_cols=88  Identities=24%  Similarity=0.237  Sum_probs=61.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      .+|.|+|+|.+|...++.+...|.+|+++++++++.+.+ .+.|.. +  ..+.+   +...+.|+||.|+..+..+...
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~-~--~~~~~---~~~~~~DvVi~av~~~~~~~~v  103 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLF-IQEGAR-L--GRTPA---EVVSTCDITFACVSDPKAAKDL  103 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHH-HHTTCE-E--CSCHH---HHHHHCSEEEECCSSHHHHHHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHH-HHcCCE-E--cCCHH---HHHhcCCEEEEeCCCHHHHHHH
Confidence            579999999999999999888999999999998887766 345653 2  11221   2223589999999865445444


Q ss_pred             H-------hccccCCEEEEecC
Q 027668          124 I-------GLLKSQGKLVLLGA  138 (220)
Q Consensus       124 ~-------~~l~~~g~iv~~g~  138 (220)
                      +       ..++++..++.++.
T Consensus       104 ~~~~~~~~~~l~~~~~vv~~s~  125 (316)
T 2uyy_A          104 VLGPSGVLQGIRPGKCYVDMST  125 (316)
T ss_dssp             HHSTTCGGGGCCTTCEEEECSC
T ss_pred             HcCchhHhhcCCCCCEEEECCC
Confidence            4       33556666665543

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.25  E-value=0.00083  Score=49.19  Aligned_cols=78  Identities=17%  Similarity=0.243  Sum_probs=58.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEE-EeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTV-ISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~-~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      .+|.|+|+|.+|.+.++.+...|.+|++ .++++++.+.+.+++|.....  ...+.    ....|+||-|+... ....
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~--~~~~~----~~~aDvVilavp~~-~~~~   96 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKA--VELKD----ALQADVVILAVPYD-SIAD   96 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEE--CCHHH----HTTSSEEEEESCGG-GHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCccc--ChHHH----HhcCCEEEEeCChH-HHHH
Confidence            4689999999999999999989999988 888888888877778866442  22222    24689999999765 4556


Q ss_pred             HHhccc
Q 027668          123 LIGLLK  128 (220)
Q Consensus       123 ~~~~l~  128 (220)
                      .+..++
T Consensus        97 v~~~l~  102 (220)
T 4huj_A           97 IVTQVS  102 (220)
T ss_dssp             HHTTCS
T ss_pred             HHHHhh
Confidence            555553

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.24  E-value=0.0013  Score=50.35  Aligned_cols=92  Identities=17%  Similarity=0.252  Sum_probs=61.1

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc------cHHHHH--HHcCCcEE-ecCCCHHHHHHhcCCccEEEE
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS------KKSEAV--ERLGADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~------~~~~~~--~~~g~~~v-~~~~~~~~~~~~~~~~d~vid  112 (220)
                      ..+|+|.|+ |.+|..+++.+...|.+|++++++..      +.+.+.  +..|+..+ .|..+.+.+.+...++|+||.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            357999997 99999999999999999999998743      211111  23355433 255566667666678999999


Q ss_pred             cCCCcc--cHHHHHhccccC---CEEE
Q 027668          113 TVSAVH--PLMPLIGLLKSQ---GKLV  134 (220)
Q Consensus       113 ~~g~~~--~~~~~~~~l~~~---g~iv  134 (220)
                      +++...  .....++.++..   ++++
T Consensus        84 ~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           84 TVGSLQIESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             CCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred             CCcchhhhhHHHHHHHHHhcCCCceEe
Confidence            998642  123344444332   4666

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=97.24  E-value=0.00062  Score=52.67  Aligned_cols=88  Identities=20%  Similarity=0.328  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..+++.++..|++|++.+++.+..+      +.....   ..+.+.++....|+|+-++....   
T Consensus       138 ~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~------~~~~~~---~~~~l~ell~~aDiV~l~~Plt~~t~  208 (315)
T 3pp8_A          138 EEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWP------GVESYV---GREELRAFLNQTRVLINLLPNTAQTV  208 (315)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCT------TCEEEE---SHHHHHHHHHTCSEEEECCCCCGGGT
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhh------hhhhhc---ccCCHHHHHhhCCEEEEecCCchhhh
Confidence            478999999999999999999999999999998765321      222111   11334444457788887765321   


Q ss_pred             -cH-HHHHhccccCCEEEEecC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~  138 (220)
                       .+ ...+..|+++..++.++.
T Consensus       209 ~li~~~~l~~mk~gailIN~aR  230 (315)
T 3pp8_A          209 GIINSELLDQLPDGAYVLNLAR  230 (315)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSC
T ss_pred             hhccHHHHhhCCCCCEEEECCC
Confidence             22 345667777777777763

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=97.24  E-value=0.0012  Score=48.17  Aligned_cols=99  Identities=14%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHH---HcCCc---EEecCCCHHHHHHhc----CCc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAAM----GTM  107 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~----~~~  107 (220)
                      ..++.+||-+|+|. |..+..+++..  +.+++.++.+++..+.+.+   ..|..   .++..+..+......    +.|
T Consensus        56 ~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f  134 (223)
T 3duw_A           56 IQGARNILEIGTLG-GYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPF  134 (223)
T ss_dssp             HHTCSEEEEECCTT-SHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred             hhCCCEEEEecCCc-cHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence            45778999999874 88888888877  5699999999876655543   33431   222222223333322    469


Q ss_pred             cEEEEcCCCc---ccHHHHHhccccCCEEEEecCC
Q 027668          108 DGIIDTVSAV---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       108 d~vid~~g~~---~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      |+||-.....   ..+..+.+.|++||.++.-...
T Consensus       135 D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~  169 (223)
T 3duw_A          135 DFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVV  169 (223)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            9998544322   2366778899999988876544

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.24  E-value=0.0059  Score=47.73  Aligned_cols=134  Identities=16%  Similarity=0.179  Sum_probs=81.4

Q ss_pred             EEEEEcCchHHHHHHHHHHHC-CCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAM-GVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~-g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      +|.|+|+|.+|...+..++.. +++++ +.++++++.+.+.+++|...++.  +.+.+-+ ...+|+|+.|+........
T Consensus         4 rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~--~~~~ll~-~~~~D~V~i~tp~~~h~~~   80 (344)
T 3ezy_A            4 RIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYK--DPHELIE-DPNVDAVLVCSSTNTHSEL   80 (344)
T ss_dssp             EEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEES--SHHHHHH-CTTCCEEEECSCGGGHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeC--CHHHHhc-CCCCCEEEEcCCCcchHHH
Confidence            688999999999877776655 56777 45666677777778888765542  2222211 1279999999988766667


Q ss_pred             HHhccccCCEEEEecCCCCCcccCcccc----ccCCc-EEEEeeccCHHHHHHHHHHHHhCCcce
Q 027668          123 LIGLLKSQGKLVLLGAPEKPLELPAFPL----LTGEK-IVGGSLIGGLKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       123 ~~~~l~~~g~iv~~g~~~~~~~~~~~~~----~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~  182 (220)
                      +..+++.|-. |++.-+-....-....+    -.++. -..++.......++.+.+++.+|.+-.
T Consensus        81 ~~~al~~gk~-v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~  144 (344)
T 3ezy_A           81 VIACAKAKKH-VFCEKPLSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAVENGTIGK  144 (344)
T ss_dssp             HHHHHHTTCE-EEEESCSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHTTTTSS
T ss_pred             HHHHHhcCCe-EEEECCCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHHcCCCCC
Confidence            7777776644 44543321100001111    11233 334544444455778888888887643

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=97.24  E-value=0.0007  Score=50.50  Aligned_cols=104  Identities=14%  Similarity=0.094  Sum_probs=67.5

Q ss_pred             hhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCc--EEecCCCHHHHHHhcCCc
Q 027668           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~  107 (220)
                      .+..+..+.++.+||-+|+|. |..+..+++..+.+++.++.++...+.+.+   ..|..  ..+...+........+.|
T Consensus        37 ~l~~l~~~~~~~~vLDiG~G~-G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~f  115 (257)
T 3f4k_A           37 AVSFINELTDDAKIADIGCGT-GGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEEL  115 (257)
T ss_dssp             HHTTSCCCCTTCEEEEETCTT-SHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCE
T ss_pred             HHHHHhcCCCCCeEEEeCCCC-CHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCE
Confidence            344444578899999999985 888889999887899999999886655533   23421  111111111111011379


Q ss_pred             cEEEEcCCC-----cccHHHHHhccccCCEEEEec
Q 027668          108 DGIIDTVSA-----VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       108 d~vid~~g~-----~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      |+|+....-     ...+..+.+.|++||.++...
T Consensus       116 D~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          116 DLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            999854322     223667888999999998875

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=97.23  E-value=0.00083  Score=51.90  Aligned_cols=84  Identities=19%  Similarity=0.239  Sum_probs=53.8

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--  118 (220)
                      -.|.+|.|+|.|.+|..+++.++..|++|++.+++.++..       .    ...+   ..++....|+|+.++....  
T Consensus       142 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-------~----~~~~---l~ell~~aDvV~l~~p~~~~t  207 (311)
T 2cuk_A          142 LQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP-------Y----PFLS---LEELLKEADVVSLHTPLTPET  207 (311)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-------S----CBCC---HHHHHHHCSEEEECCCCCTTT
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc-------c----ccCC---HHHHHhhCCEEEEeCCCChHH
Confidence            3578999999999999999999999999999988765421       1    1111   1122234566666654431  


Q ss_pred             --cH-HHHHhccccCCEEEEecC
Q 027668          119 --PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 --~~-~~~~~~l~~~g~iv~~g~  138 (220)
                        .+ ...+..++++..++.++.
T Consensus       208 ~~li~~~~l~~mk~ga~lin~sr  230 (311)
T 2cuk_A          208 HRLLNRERLFAMKRGAILLNTAR  230 (311)
T ss_dssp             TTCBCHHHHTTSCTTCEEEECSC
T ss_pred             HhhcCHHHHhhCCCCcEEEECCC
Confidence              12 134455666666666554

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.23  E-value=0.0017  Score=50.76  Aligned_cols=93  Identities=18%  Similarity=0.232  Sum_probs=62.8

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc----ccHHHH--HHHcCCcEE-ecCCCHHHHHHhcC--CccEEEE
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP----SKKSEA--VERLGADSF-LVSRDQDEMQAAMG--TMDGIID  112 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~----~~~~~~--~~~~g~~~v-~~~~~~~~~~~~~~--~~d~vid  112 (220)
                      ..+|||.|+ |.+|..+++.+...|.+|+++++++    ++...+  .+..++..+ .|..+.+.+.+...  ++|+||.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~   89 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS   89 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence            357999998 9999999999999999999999976    222211  123455433 35556677776666  9999999


Q ss_pred             cCCCcc--cHHHHHhccccCC---EEEE
Q 027668          113 TVSAVH--PLMPLIGLLKSQG---KLVL  135 (220)
Q Consensus       113 ~~g~~~--~~~~~~~~l~~~g---~iv~  135 (220)
                      +++...  .....++.++..|   +++.
T Consensus        90 ~a~~~n~~~~~~l~~aa~~~g~v~~~v~  117 (346)
T 3i6i_A           90 TVGGESILDQIALVKAMKAVGTIKRFLP  117 (346)
T ss_dssp             CCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred             CCchhhHHHHHHHHHHHHHcCCceEEee
Confidence            998642  1233445444444   5553

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.23  E-value=0.0013  Score=50.06  Aligned_cols=77  Identities=18%  Similarity=0.146  Sum_probs=57.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC---eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV---KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~---~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      .+|.|+|+|.+|.+.++.+...|.   +|++.++++++.+.+.+++|....  . +   ..+...+.|+||-|+... .+
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~--~-~---~~~~~~~aDvVilav~p~-~~   76 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTT--Q-D---NRQGALNADVVVLAVKPH-QI   76 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEE--S-C---HHHHHSSCSEEEECSCGG-GH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEe--C-C---hHHHHhcCCeEEEEeCHH-HH
Confidence            568899999999999999998888   899999999988888766786532  1 1   122335789999999654 45


Q ss_pred             HHHHhcc
Q 027668          121 MPLIGLL  127 (220)
Q Consensus       121 ~~~~~~l  127 (220)
                      ...++.+
T Consensus        77 ~~vl~~l   83 (280)
T 3tri_A           77 KMVCEEL   83 (280)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5544433

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.22  E-value=0.00032  Score=51.95  Aligned_cols=96  Identities=21%  Similarity=0.095  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcEEecCCCH-HHHHHhcC-CccEE-EEcC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADSFLVSRDQ-DEMQAAMG-TMDGI-IDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~-~~~~~~~~-~~d~v-id~~  114 (220)
                      .+|.+||-+|+|. |..+..+++..+.+++.++.+++..+.+.+..   +....+...+- +....+.+ .||.| +|+.
T Consensus        59 ~~G~rVLdiG~G~-G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGM-AIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTT-SHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCc-cHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence            7899999999984 87788888777779999999988766664322   22222222222 22222222 69988 4655


Q ss_pred             CCcc----------cHHHHHhccccCCEEEEec
Q 027668          115 SAVH----------PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       115 g~~~----------~~~~~~~~l~~~g~iv~~g  137 (220)
                      ....          .+..+.+.|+|||+++.+.
T Consensus       138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            4321          2455788999999998764

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.22  E-value=0.00054  Score=50.26  Aligned_cols=96  Identities=21%  Similarity=0.177  Sum_probs=62.4

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCC-cEEecCCCHHHHHHhc-CCccEEEEcC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA-DSFLVSRDQDEMQAAM-GTMDGIIDTV  114 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~-~~v~~~~~~~~~~~~~-~~~d~vid~~  114 (220)
                      ++++++||-+|+|..|..+..+++..+.+|+.++.+++..+.+.+.   .|. -.++..+- .....+. +.||+|+-..
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~-~~~~~~~~~~fD~I~~np  131 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNG-GIIKGVVEGTFDVIFSAP  131 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS-CSSTTTCCSCEEEEEECC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc-hhhhhcccCceeEEEECC
Confidence            5789999999999668888888887688999999998876655432   342 12222220 0111112 4799998432


Q ss_pred             CC-------------------------cccHHHHHhccccCCEEEEe
Q 027668          115 SA-------------------------VHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       115 g~-------------------------~~~~~~~~~~l~~~g~iv~~  136 (220)
                      ..                         ...+..+.+.|+++|+++++
T Consensus       132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             CCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            11                         12356677788999998875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.22  E-value=0.0022  Score=48.60  Aligned_cols=86  Identities=19%  Similarity=0.142  Sum_probs=60.1

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      +|.|+|+|.+|...++.+...|.+|+++++++++.+.+ .+.|.. ....  +   ..+. .+.|+||.|+.... ....
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~-~~~g~~~~~~~--~---~~~~-~~~D~vi~av~~~~-~~~~   73 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-VERQLVDEAGQ--D---LSLL-QTAKIIFLCTPIQL-ILPT   73 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTSCSEEES--C---GGGG-TTCSEEEECSCHHH-HHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HhCCCCccccC--C---HHHh-CCCCEEEEECCHHH-HHHH
Confidence            58899999999999999999999999999988877776 466753 2221  1   1223 57899999998753 3333


Q ss_pred             H----hccccCCEEEEecC
Q 027668          124 I----GLLKSQGKLVLLGA  138 (220)
Q Consensus       124 ~----~~l~~~g~iv~~g~  138 (220)
                      +    ..++++..++.++.
T Consensus        74 ~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           74 LEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             HHHHGGGSCTTCEEEECCS
T ss_pred             HHHHHhhCCCCCEEEECCC
Confidence            3    34555666666543

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.22  E-value=0.0021  Score=45.36  Aligned_cols=97  Identities=21%  Similarity=0.194  Sum_probs=62.8

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCC--cEEecCCCHHHHHHhcCCccEEEEc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGA--DSFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~--~~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      .+.++++||.+|+|. |..+..+++.. .+++.++.+++..+.+.+.   .+.  ...+...+....-...+.+|+|+..
T Consensus        30 ~~~~~~~vldiG~G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  107 (192)
T 1l3i_A           30 EPGKNDVAVDVGCGT-GGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVG  107 (192)
T ss_dssp             CCCTTCEEEEESCTT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEES
T ss_pred             CCCCCCEEEEECCCC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEEC
Confidence            368899999999986 88777777766 8999999998876665442   333  1111122222111111479999966


Q ss_pred             CCCc---ccHHHHHhccccCCEEEEec
Q 027668          114 VSAV---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       114 ~g~~---~~~~~~~~~l~~~g~iv~~g  137 (220)
                      ....   ..+..+.+.|+++|.++...
T Consensus       108 ~~~~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A          108 GSGGELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             CCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            4422   23556778899999998753

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.22  E-value=0.0011  Score=47.66  Aligned_cols=71  Identities=24%  Similarity=0.332  Sum_probs=51.6

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE--ecCCCHHHHHHhc---CCccEEEEcCCCc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF--LVSRDQDEMQAAM---GTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v--~~~~~~~~~~~~~---~~~d~vid~~g~~  117 (220)
                      +++||.|+ |.+|..+++.+...  +|+++++++++.+.+.++++. ..  .|-.+.+.+.+..   +++|++|.++|..
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~   77 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEEAGPLDLLVHAVGKA   77 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCcC
Confidence            36899997 99999999887766  999999988777666555543 22  2444555555444   3899999998853

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.21  E-value=0.0012  Score=50.53  Aligned_cols=87  Identities=20%  Similarity=0.170  Sum_probs=62.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH--
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM--  121 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~--  121 (220)
                      .+|.|+|.|.+|...++.+...|.+|++.++++++.+.+ .+.|....   .+   ..+... .|+||.|+..+..+.  
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~---~~---~~~~~~-aDvvi~~vp~~~~~~~v   87 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPL-AEAGATLA---DS---VADVAA-ADLIHITVLDDAQVREV   87 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHH-HHTTCEEC---SS---HHHHTT-SSEEEECCSSHHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHCCCEEc---CC---HHHHHh-CCEEEEECCChHHHHHH
Confidence            468999999999999999999999999999999887777 45565421   12   334445 899999998753333  


Q ss_pred             --HHHhccccCCEEEEecC
Q 027668          122 --PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       122 --~~~~~l~~~g~iv~~g~  138 (220)
                        .....++++..++..+.
T Consensus        88 ~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           88 VGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             HHHHHTTCCTTCEEEECSC
T ss_pred             HHHHHHhcCCCCEEEEeCC
Confidence              33445566666666554

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.21  E-value=0.002  Score=49.85  Aligned_cols=99  Identities=19%  Similarity=0.157  Sum_probs=64.2

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHH---cCC-cEEecCCCHHHHHHhcCCccEEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVER---LGA-DSFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~---~g~-~~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .+++|++||-+|+|+ |..+..+++.++  .+|++++.++.+.+.+.+.   +|. ...+...+........+.||.|+-
T Consensus       115 ~~~~g~~VLDlg~G~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~  193 (315)
T 1ixk_A          115 DPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILL  193 (315)
T ss_dssp             CCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEE
Confidence            368999999999875 667777887763  5899999998876665443   354 222222232222222347999974


Q ss_pred             ---cCCCc-------------------------ccHHHHHhccccCCEEEEecC
Q 027668          113 ---TVSAV-------------------------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ---~~g~~-------------------------~~~~~~~~~l~~~g~iv~~g~  138 (220)
                         |+|..                         ..+..+.+.|++||+++....
T Consensus       194 d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          194 DAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  247 (315)
T ss_dssp             ECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             eCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence               43321                         235667889999999988654

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.21  E-value=0.0014  Score=49.45  Aligned_cols=103  Identities=14%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCccc-H-HHHHHHc-------------------------CCc-EEec
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK-K-SEAVERL-------------------------GAD-SFLV   93 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~-~-~~~~~~~-------------------------g~~-~v~~   93 (220)
                      .|.+|||+|+|.+|...++.+...|++|++++..... . ..+ ..+                         |.- .++.
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~i~   90 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKF-GKFIQNKDQPDYREDAKRFINPNWDPTKNEIYEYIR   90 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECTTHHHHH-CGGGC-----------CEEECTTCCTTSCCCSEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCCcchhHHH-HHHHhccccccccchhhcccccccccccCCeeEEEc
Confidence            5789999999999999999999999999988865431 1 111 122                         111 2222


Q ss_pred             CC-CHHHHHH--hcCCccEEEEcCCCcccHHHHHhccccC---CEEEEecCCCCCccc
Q 027668           94 SR-DQDEMQA--AMGTMDGIIDTVSAVHPLMPLIGLLKSQ---GKLVLLGAPEKPLEL  145 (220)
Q Consensus        94 ~~-~~~~~~~--~~~~~d~vid~~g~~~~~~~~~~~l~~~---g~iv~~g~~~~~~~~  145 (220)
                      .. +.+.+..  ...++|+||-|.+....-.......+..   |..|.........+|
T Consensus        91 ~~~~~~dL~~l~~~~~adlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f  148 (274)
T 1kyq_A           91 SDFKDEYLDLENENDAWYIIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDF  148 (274)
T ss_dssp             SSCCGGGGCCSSTTCCEEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBSE
T ss_pred             CCCCHHHHhhcccCCCeEEEEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCee
Confidence            21 1111100  0128999999999875333455555555   777766554433343

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=97.21  E-value=0.0015  Score=47.88  Aligned_cols=96  Identities=23%  Similarity=0.226  Sum_probs=62.0

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHHcC---CcEEecCC--CHHHHHHhcCCccEEEE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERLG---ADSFLVSR--DQDEMQAAMGTMDGIID  112 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~g---~~~v~~~~--~~~~~~~~~~~~d~vid  112 (220)
                      ++++++||-+|+|. |..+..+++..|  .+|+.++.+++..+.+.+...   .-.++..+  +........+.||+|+-
T Consensus        71 ~~~~~~vLDlG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           71 IKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeccC-CHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEE
Confidence            67899999999876 888888888764  589999999865444433221   11122221  11111112247999996


Q ss_pred             cCCCcc---c-HHHHHhccccCCEEEEe
Q 027668          113 TVSAVH---P-LMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       113 ~~g~~~---~-~~~~~~~l~~~g~iv~~  136 (220)
                      ......   . +..+.+.|++||.++..
T Consensus       150 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          150 DVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            554432   2 56678899999999887

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.20  E-value=0.0018  Score=48.61  Aligned_cols=76  Identities=13%  Similarity=0.148  Sum_probs=55.6

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      +|.|+|+|.+|...+..+...| .+|+++++++++.+.+.+.+|....-+..      +.. ..|+||-|+. +......
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~------~~~-~~D~vi~~v~-~~~~~~v   73 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLP------ELH-SDDVLILAVK-PQDMEAA   73 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCC------CCC-TTSEEEECSC-HHHHHHH
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHH------HHh-cCCEEEEEeC-chhHHHH
Confidence            5889999999999999888889 89999999988888776667765321111      123 6788988888 3345666


Q ss_pred             Hhccc
Q 027668          124 IGLLK  128 (220)
Q Consensus       124 ~~~l~  128 (220)
                      +..+.
T Consensus        74 ~~~l~   78 (263)
T 1yqg_A           74 CKNIR   78 (263)
T ss_dssp             HTTCC
T ss_pred             HHHhc
Confidence            65554

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.18  E-value=0.0056  Score=47.63  Aligned_cols=133  Identities=14%  Similarity=-0.011  Sum_probs=79.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHHC-CCeEEE-EeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAM-GVKVTV-ISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~-g~~v~~-~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  121 (220)
                      -+|.|+|+|.+|...+..++.. +++++. .+++.++.+.+.+++|...++  .+.+.+-+ ...+|+|+.|+.......
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~--~~~~~ll~-~~~~D~V~i~tp~~~h~~   82 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAY--GSYEELCK-DETIDIIYIPTYNQGHYS   82 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCB--SSHHHHHH-CTTCSEEEECCCGGGHHH
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCcee--CCHHHHhc-CCCCCEEEEcCCCHHHHH
Confidence            3688999999999888877775 567774 455666667777788864332  23222211 137999999999886677


Q ss_pred             HHHhccccCCEEEEecCCCCCcccC-ccc----cccCCcEE-EEeeccCHHHHHHHHHHHHhCCcc
Q 027668          122 PLIGLLKSQGKLVLLGAPEKPLELP-AFP----LLTGEKIV-GGSLIGGLKETQEMIDFAAKHNIR  181 (220)
Q Consensus       122 ~~~~~l~~~g~iv~~g~~~~~~~~~-~~~----~~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~  181 (220)
                      .+..+++.|-. |++.-+-.. +.. ...    .-.++..+ .++.......++.+.+++++|.+-
T Consensus        83 ~~~~al~~gk~-vl~EKP~~~-~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG  146 (330)
T 3e9m_A           83 AAKLALSQGKP-VLLEKPFTL-NAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQEGGLG  146 (330)
T ss_dssp             HHHHHHHTTCC-EEECSSCCS-SHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHCCCe-EEEeCCCCC-CHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHhCCCCC
Confidence            77777776644 444332211 100 011    11223333 333333334577777888887764

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.18  E-value=0.00077  Score=50.65  Aligned_cols=71  Identities=14%  Similarity=0.201  Sum_probs=51.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      .++++||.|+ |.+|.++++.+...|++|++++++.++....    .... ..|-.+.+.++++       .+++|++|+
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~  102 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSADP----DIHTVAGDISKPETADRIVREGIERFGRIDSLVN  102 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSST----TEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccC----ceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEEE
Confidence            5689999997 9999999999999999999999987643221    2221 2244555444332       248999999


Q ss_pred             cCCC
Q 027668          113 TVSA  116 (220)
Q Consensus       113 ~~g~  116 (220)
                      ++|.
T Consensus       103 nAg~  106 (260)
T 3un1_A          103 NAGV  106 (260)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9985

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.18  E-value=0.00078  Score=50.72  Aligned_cols=87  Identities=16%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      -+|.|+|+|.+|...++.+...|.+ |.++++++++.+.+.+.+|.... .  +   ..+.....|+||.|+.... ...
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~-~--~---~~~~~~~~Dvvi~av~~~~-~~~   83 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYT-T--D---LAEVNPYAKLYIVSLKDSA-FAE   83 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEE-S--C---GGGSCSCCSEEEECCCHHH-HHH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCcee-C--C---HHHHhcCCCEEEEecCHHH-HHH
Confidence            4689999999999999988888997 88899988887777666676532 1  1   1122347899999998763 344


Q ss_pred             HHhc----cccCCEEEEec
Q 027668          123 LIGL----LKSQGKLVLLG  137 (220)
Q Consensus       123 ~~~~----l~~~g~iv~~g  137 (220)
                      .++.    ++++..++.+.
T Consensus        84 v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           84 LLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             HHHHHHTTCCTTCEEEECC
T ss_pred             HHHHHHhhcCCCcEEEECC
Confidence            4433    34555555553

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=97.18  E-value=0.00048  Score=53.52  Aligned_cols=88  Identities=19%  Similarity=0.259  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..+++.++..|++|++.+++.+..+.      ....+...   .+.++....|+|+.++....   
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------~~~~~~~~---~l~ell~~aDvV~l~lPlt~~t~  206 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADH------FHETVAFT---ATADALATANFIVNALPLTPTTH  206 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTT------CSEEEEGG---GCHHHHHHCSEEEECCCCCGGGT
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHh------HhhccccC---CHHHHHhhCCEEEEcCCCchHHH
Confidence            4789999999999999999999999999999987654321      12122111   12223335788888876421   


Q ss_pred             -cH-HHHHhccccCCEEEEecC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~  138 (220)
                       .+ ...+..|+++..++.++.
T Consensus       207 ~li~~~~l~~mk~gailIN~aR  228 (324)
T 3evt_A          207 HLFSTELFQQTKQQPMLINIGR  228 (324)
T ss_dssp             TCBSHHHHHTCCSCCEEEECSC
T ss_pred             HhcCHHHHhcCCCCCEEEEcCC
Confidence             12 356677888888888874

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=97.17  E-value=0.00036  Score=50.30  Aligned_cols=93  Identities=23%  Similarity=0.254  Sum_probs=59.7

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHH---cCCc--EEecCCCHHHHHHhcCCccEEEEc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVER---LGAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~---~g~~--~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      ++++++||-+|+|. |..+..+++ .|. +++.++.+++..+.+.+.   .+..  .++..+-.+   ...+.||+|+..
T Consensus        58 ~~~~~~vLDiG~G~-G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~~~~fD~i~~~  132 (205)
T 3grz_A           58 MVKPLTVADVGTGS-GILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA---DVDGKFDLIVAN  132 (205)
T ss_dssp             CSSCCEEEEETCTT-SHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT---TCCSCEEEEEEE
T ss_pred             ccCCCEEEEECCCC-CHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc---cCCCCceEEEEC
Confidence            47889999999876 777777666 465 999999998876655433   2322  222222111   122489999865


Q ss_pred             CCCcc---cHHHHHhccccCCEEEEec
Q 027668          114 VSAVH---PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       114 ~g~~~---~~~~~~~~l~~~g~iv~~g  137 (220)
                      .....   .+..+.+.|+++|.++..+
T Consensus       133 ~~~~~~~~~l~~~~~~L~~gG~l~~~~  159 (205)
T 3grz_A          133 ILAEILLDLIPQLDSHLNEDGQVIFSG  159 (205)
T ss_dssp             SCHHHHHHHGGGSGGGEEEEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            44332   2445666789999998853

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.16  E-value=0.00096  Score=52.83  Aligned_cols=76  Identities=20%  Similarity=0.126  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHH-HcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVE-RLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~-~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .+.+|||.|+ |.+|..+++.+...| .+|+++++.........+ .-+...+ .|..+.+.+.+...++|+||.+++..
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~~~  110 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATYH  110 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCCCS
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCCcc
Confidence            4578999997 999999999999999 999999987654221111 0122222 24445667777777999999999864

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.15  E-value=0.0025  Score=49.87  Aligned_cols=86  Identities=27%  Similarity=0.257  Sum_probs=59.6

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      +.+|.|+|+|.+|.+.++.++..|.+|++.++++++.....++.|....    +.+   +.....|+||-|+.... ...
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~----~~~---e~~~~aDvVilavp~~~-~~~   87 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA----DVK---TAVAAADVVMILTPDEF-QGR   87 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE----CHH---HHHHTCSEEEECSCHHH-HHH
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc----cHH---HHHhcCCEEEEeCCcHH-HHH
Confidence            3569999999999999999999999999988887663444467787422    221   22237899999998763 344


Q ss_pred             HHh-----ccccCCEEEEe
Q 027668          123 LIG-----LLKSQGKLVLL  136 (220)
Q Consensus       123 ~~~-----~l~~~g~iv~~  136 (220)
                      .+.     .++++..++.+
T Consensus        88 v~~~~i~~~l~~~~ivi~~  106 (338)
T 1np3_A           88 LYKEEIEPNLKKGATLAFA  106 (338)
T ss_dssp             HHHHHTGGGCCTTCEEEES
T ss_pred             HHHHHHHhhCCCCCEEEEc
Confidence            443     45555555543

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.15  E-value=0.0013  Score=50.97  Aligned_cols=77  Identities=16%  Similarity=0.057  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccH--HHHHHHc----CCcEE-ecCCCHHHHHHhcC--CccE
Q 027668           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK--SEAVERL----GADSF-LVSRDQDEMQAAMG--TMDG  109 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~--~~~~~~~----g~~~v-~~~~~~~~~~~~~~--~~d~  109 (220)
                      -+++.+|||.|+ |.+|..+++.+...|.+|++++++..+.  ..+ +.+    +...+ .|..+.+.+.+...  ++|+
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   89 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRL-RELGIEGDIQYEDGDMADACSVQRAVIKAQPQE   89 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHH-HHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccch-hhccccCceEEEECCCCCHHHHHHHHHHcCCCE
Confidence            378899999997 9999999999999999999999876531  122 222    22222 24455566655544  5899


Q ss_pred             EEEcCCCc
Q 027668          110 IIDTVSAV  117 (220)
Q Consensus       110 vid~~g~~  117 (220)
                      ||.+++..
T Consensus        90 Vih~A~~~   97 (335)
T 1rpn_A           90 VYNLAAQS   97 (335)
T ss_dssp             EEECCSCC
T ss_pred             EEECcccc
Confidence            99998853

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.15  E-value=0.0019  Score=47.61  Aligned_cols=96  Identities=17%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHH---HHHc-CCcEEe-cCCCHHHHHHhcCCccEEEE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEA---VERL-GADSFL-VSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~---~~~~-g~~~v~-~~~~~~~~~~~~~~~d~vid  112 (220)
                      ++||++||=+|+|+ |..+..+++..|  .+|++++.++...+.+   +++. +...+. |....+......+.||+||-
T Consensus        74 l~~g~~VLDlG~Gt-G~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~  152 (232)
T 3id6_C           74 IRKGTKVLYLGAAS-GTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV  152 (232)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeecC-CHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence            78999999999875 667777777655  3999999998754322   2222 223222 21222211122347999986


Q ss_pred             cCCCcccH---HH-HHhccccCCEEEEe
Q 027668          113 TVSAVHPL---MP-LIGLLKSQGKLVLL  136 (220)
Q Consensus       113 ~~g~~~~~---~~-~~~~l~~~g~iv~~  136 (220)
                      ....+...   .. +.+.|++||+++..
T Consensus       153 d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          153 DIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             CCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            55444321   22 23389999999976

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.14  E-value=0.0076  Score=47.47  Aligned_cols=92  Identities=21%  Similarity=0.254  Sum_probs=63.0

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      ..+|.|+|.|.+|...++.+...|.+|++.++++++.+.+. +.|...   ..+.+..-+....+|+||-|+... ....
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~-~~g~~~---~~s~~e~~~~a~~~DvVi~~vp~~-~v~~   96 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALE-REGIAG---ARSIEEFCAKLVKPRVVWLMVPAA-VVDS   96 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-TTTCBC---CSSHHHHHHHSCSSCEEEECSCGG-GHHH
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH-HCCCEE---eCCHHHHHhcCCCCCEEEEeCCHH-HHHH
Confidence            46899999999999999999999999999999988877763 445431   222222222223569999999876 3443


Q ss_pred             H----HhccccCCEEEEecCC
Q 027668          123 L----IGLLKSQGKLVLLGAP  139 (220)
Q Consensus       123 ~----~~~l~~~g~iv~~g~~  139 (220)
                      .    ...++++..++..+..
T Consensus        97 vl~~l~~~l~~g~iiId~st~  117 (358)
T 4e21_A           97 MLQRMTPLLAANDIVIDGGNS  117 (358)
T ss_dssp             HHHHHGGGCCTTCEEEECSSC
T ss_pred             HHHHHHhhCCCCCEEEeCCCC
Confidence            3    3445566666665543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.14  E-value=0.0033  Score=48.62  Aligned_cols=84  Identities=18%  Similarity=0.257  Sum_probs=58.0

Q ss_pred             CEEEEEcCchHHHH-HHHHHHH-CCCeEE-EEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           44 MHVGVVGLGGLGHV-AVKFAKA-MGVKVT-VISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~-~~~~~~~-~g~~v~-~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -+|.|+|+|.+|.. .+..++. -+++++ +.++++++.+.+.+++|.. +  +.+.+.+   ...+|+|+.|+......
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~-~--~~~~~~l---~~~~D~V~i~tp~~~h~   79 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIP-Y--ADSLSSL---AASCDAVFVHSSTASHF   79 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCC-B--CSSHHHH---HTTCSEEEECSCTTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCC-c--cCcHHHh---hcCCCEEEEeCCchhHH
Confidence            36899999999985 6665554 467776 6667777777777788876 2  3333333   34799999999876556


Q ss_pred             HHHHhccccCCEE
Q 027668          121 MPLIGLLKSQGKL  133 (220)
Q Consensus       121 ~~~~~~l~~~g~i  133 (220)
                      ..+..+++.|-.+
T Consensus        80 ~~~~~al~~G~~v   92 (319)
T 1tlt_A           80 DVVSTLLNAGVHV   92 (319)
T ss_dssp             HHHHHHHHTTCEE
T ss_pred             HHHHHHHHcCCeE
Confidence            6666777765433

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.14  E-value=0.0016  Score=49.36  Aligned_cols=89  Identities=13%  Similarity=0.138  Sum_probs=61.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhcCCccEEEEcCCCccc---
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAMGTMDGIIDTVSAVHP---  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~~g~~~~---  119 (220)
                      .+|||.|+|.+|..+++.+...|.+|+++++++++...+ ...+...+. |..+.+     ..++|+||.+++....   
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~D~~d~~-----~~~~d~vi~~a~~~~~~~~   79 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAI-RASGAEPLLWPGEEPS-----LDGVTHLLISTAPDSGGDP   79 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHH-HHTTEEEEESSSSCCC-----CTTCCEEEECCCCBTTBCH
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhH-hhCCCeEEEecccccc-----cCCCCEEEECCCccccccH
Confidence            579999999999999999999999999999998876655 344554332 322211     4589999999976421   


Q ss_pred             -HHHHHhcccc----CCEEEEecC
Q 027668          120 -LMPLIGLLKS----QGKLVLLGA  138 (220)
Q Consensus       120 -~~~~~~~l~~----~g~iv~~g~  138 (220)
                       ....++.++.    -.+++.++.
T Consensus        80 ~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           80 VLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             HHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             HHHHHHHHHHhhcCCceEEEEeec
Confidence             2334444433    267887654

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.14  E-value=0.0051  Score=50.37  Aligned_cols=95  Identities=20%  Similarity=0.245  Sum_probs=62.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      .+|.|+|+|.+|...+..+...|.+|.+.++++++.+.+.++.+...+....+.+..-+..+..|+||-|+.....+...
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            35889999999999999998899999999999888877765542111222223322222123589999999875334443


Q ss_pred             H----hccccCCEEEEecC
Q 027668          124 I----GLLKSQGKLVLLGA  138 (220)
Q Consensus       124 ~----~~l~~~g~iv~~g~  138 (220)
                      +    ..++++..++..+.
T Consensus        86 l~~l~~~l~~g~iiId~s~  104 (474)
T 2iz1_A           86 IKSLLPLLDIGDILIDGGN  104 (474)
T ss_dssp             HHHHGGGCCTTCEEEECSC
T ss_pred             HHHHHhhCCCCCEEEECCC
Confidence            3    34556666665543

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.13  E-value=0.00042  Score=54.78  Aligned_cols=111  Identities=14%  Similarity=0.129  Sum_probs=67.9

Q ss_pred             hhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCc-------ccHHHHHHHcCCcEEecCCCHHHH
Q 027668           29 TVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP-------SKKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        29 ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~-------~~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      .-+.+++..+.--+..+|+|+|+|..|..+++++..+|+ +|+++++.-       +++....+.|... .-.......+
T Consensus       174 all~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~-~~~~~~~~~L  252 (398)
T 2a9f_A          174 AIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKV-TNREFKSGTL  252 (398)
T ss_dssp             HHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHH-HSCTTCCCSC
T ss_pred             HHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhc-cCcccchhhH
Confidence            334445444432355789999999999999999999999 999998863       1122221222111 0000011112


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+...++|++|-+++..-.-+..++.|+++..+..+..+.
T Consensus       253 ~eav~~ADV~IG~Sapgl~T~EmVk~Ma~~pIIfalsNPt  292 (398)
T 2a9f_A          253 EDALEGADIFIGVSAPGVLKAEWISKMAARPVIFAMANPI  292 (398)
T ss_dssp             SHHHHTTCSEEECCSTTCCCHHHHHTSCSSCEEEECCSSS
T ss_pred             HHHhccCCEEEecCCCCCCCHHHHHhhCCCCEEEECCCCC
Confidence            2222368999998874323456888899988888877765

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=97.13  E-value=0.0014  Score=49.74  Aligned_cols=62  Identities=18%  Similarity=0.180  Sum_probs=46.9

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcC--CccEEEEcCCCc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~d~vid~~g~~  117 (220)
                      .+..+|||.|+ |.+|..+++.+...|.+|++++++.               .|..+.+.+.+...  ++|+||.+++..
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~---------------~Dl~d~~~~~~~~~~~~~d~vih~A~~~   74 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------LDITNVLAVNKFFNEKKPNVVINCAAHT   74 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------CCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCcc---------------CCCCCHHHHHHHHHhcCCCEEEECCccC
Confidence            56688999997 9999999999999999999988752               23344555555444  799999998864

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=97.12  E-value=0.00086  Score=52.35  Aligned_cols=87  Identities=25%  Similarity=0.325  Sum_probs=62.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..+++.++.+|++|++.+++..+.  + ++. ..    ..+   ..++....|+|+.++....   
T Consensus       144 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-~~----~~~---l~ell~~aDvV~~~~P~~~~t~  212 (333)
T 1dxy_A          144 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPD-FD----YVS---LEDLFKQSDVIDLHVPGIEQNT  212 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTT-CE----ECC---HHHHHHHCSEEEECCCCCGGGT
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhc-cc----cCC---HHHHHhcCCEEEEcCCCchhHH
Confidence            57899999999999999999999999999999876542  1 121 22    112   2233346899999887543   


Q ss_pred             -cH-HHHHhccccCCEEEEecCC
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~~  139 (220)
                       .+ ...+..|++++.++.++..
T Consensus       213 ~li~~~~l~~mk~ga~lIn~srg  235 (333)
T 1dxy_A          213 HIINEAAFNLMKPGAIVINTARP  235 (333)
T ss_dssp             TSBCHHHHHHSCTTEEEEECSCT
T ss_pred             HHhCHHHHhhCCCCcEEEECCCC
Confidence             12 3567788999988888763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	2e-30
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	1e-29
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	5e-20
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	1e-19
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	1e-17
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	1e-17
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	2e-17
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	3e-17
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-17
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	4e-16
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	6e-16
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	1e-14
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-14
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	5e-14
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	7e-11
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	4e-09
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	5e-08
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	1e-07
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	2e-06
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	2e-06
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	3e-06
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-05
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	1e-05
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	2e-05
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	4e-05
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	1e-04
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	2e-04
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	4e-04
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	5e-04
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	5e-04
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	0.001
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	0.002
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	0.002

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 5/169 (2%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS 75
           P    APLLC G+TVYSPL   G   PG  VG+VGLGG+G +    +KAM    T + + 
Sbjct: 2   PSHLAAPLLCGGLTVYSPLVRNGC-GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISR 59

Query: 76  PSKKSEAVERLGADSFLVSRDQDEM-QAAMGTMDGIIDTVSAVHPLMP--LIGLLKSQGK 132
            S+K E   ++GAD ++ + ++ +  +    T D I+   S++  +    +   +K  G+
Sbjct: 60  SSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGR 119

Query: 133 LVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIR 181
           +V +  PE+   L   P       +  S +G +KE  +++   ++ +I+
Sbjct: 120 IVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKDIK 168

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score =  106 bits (265), Expect = 1e-29
 Identities = 83/170 (48%), Positives = 107/170 (62%), Gaps = 4/170 (2%)

Query: 12  PEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTV 71
           P+   L A APLLCAGIT YSPLR +    PG  VGVVG+GGLGH+ +K A AMG  V  
Sbjct: 2   PQ-EQLAAVAPLLCAGITTYSPLRHWQA-GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVA 59

Query: 72  ISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQG 131
             T+   K EA + LGAD  + SR+ DEM A + + D I++TV+A H L     LLK  G
Sbjct: 60  F-TTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDG 118

Query: 132 KLVLLGAPEKPLELP-AFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNI 180
            + L+GAP  P + P  F L+   + + GS+IGG+ ETQEM+DF A+H I
Sbjct: 119 TMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGI 168

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 81.3 bits (199), Expect = 5e-20
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 5/165 (3%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS 75
                AP+LCAG+TVY  L+     +PG  V + G+GGLGHVAV++A+AMG+ V  I   
Sbjct: 2   EFAEIAPILCAGVTVYKGLKQTNA-RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID 60

Query: 76  PSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG---IIDTVSAVHPLMPLIGLLKSQGK 132
            +K  E   +LGA   + +R +D ++A    + G   ++ T  +       IG+ +  G 
Sbjct: 61  DAKL-ELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGT 119

Query: 133 LVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAK 177
           + L+G P      P F ++     + GS++G   + QE +DFA +
Sbjct: 120 IALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEALDFAGE 164

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 80.1 bits (196), Expect = 1e-19
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 3/168 (1%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS 75
             +  AP+ CAG+T Y  L+  G  KPG  V + G+GGLGHVAV++AKAMG+ V  +   
Sbjct: 2   SFEEAAPIFCAGVTTYKALKVTGA-KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG 60

Query: 76  PSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGI--IDTVSAVHPLMPLIGLLKSQGKL 133
             K   A E          ++                + T  +          ++  G  
Sbjct: 61  DEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGAC 120

Query: 134 VLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIR 181
           VL+G P + + +P F  +     + GS++G  K+ QE + FAA+  ++
Sbjct: 121 VLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVK 168

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 75.4 bits (184), Expect = 1e-17
 Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 8/171 (4%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           A L+    + C   + Y          PG    V GLG +G  A+   K  G    +   
Sbjct: 1   ANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAID 60

Query: 75  SPSKKSEAVERLGADSFLVSRDQDEMQAAM------GTMDGIIDTVSAVHPLMPLI-GLL 127
              +K    + LGA   L  R+ D+    +      G +D  +D       L   +   +
Sbjct: 61  INGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV 120

Query: 128 KSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKH 178
              G   ++GA    + +P   ++ G  I  G+  GG K    + +  + +
Sbjct: 121 LGWGSCTVVGAKVDEMTIPTVDVILGRSIN-GTFFGGWKSVDSVPNLVSDY 170

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 75.4 bits (184), Expect = 1e-17
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 11/173 (6%)

Query: 17  LDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP 76
           LD  A  +C+G T Y     Y     G  V + G G LG   V  A+++G +  ++    
Sbjct: 3   LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS 62

Query: 77  SKKSEAVERLGADSFLVSRDQDEMQAAMGTM--------DGIIDTVSAVHPLMPLIGLLK 128
             + +  E +GAD  L  R+    +     M        D I++       L+    LL+
Sbjct: 63  PNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLR 122

Query: 129 SQGKLVLLG--APEKPLELPAFPLLTG-EKIVGGSLIGGLKETQEMIDFAAKH 178
             G   + G   P+ P+    +  L        G  +       + +   +++
Sbjct: 123 RGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRN 175

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 74.6 bits (182), Expect = 2e-17
 Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 7/172 (4%)

Query: 11  IPEGAPLDATAPLLCAGITVYSPLRFYGLD-KPGMHVGVVGLGGLGHVAVKFAKAMGVKV 69
           I     ++  APL  AGIT Y  ++       PG +V +VG+GGLGH+AV+  K M    
Sbjct: 1   ISREKLVEM-APLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPAT 59

Query: 70  TVISTSPSKKSEAVERLGADSFLVSRDQDE----MQAAMGTMDGIIDTVSAVHPLMPLIG 125
            +      +K +  ERLGAD  + +R               ++  +D V +   +     
Sbjct: 60  VIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPY 119

Query: 126 LLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAK 177
           LL   G+L+++G   +    P   +++ E    GSL+G   E  E++  A +
Sbjct: 120 LLGRMGRLIIVGYGGELRF-PTIRVISSEVSFEGSLVGNYVELHELVTLALQ 170

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 74.2 bits (181), Expect = 3e-17
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 9/171 (5%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS 75
           P++   PL C   T            P       G G +G  A+  AK  G  + +    
Sbjct: 2   PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI 61

Query: 76  PSKKSEAVERLGADSFLVSRDQDEMQAAM----GTMDGIIDTVSAVHPLMPLIGLLKSQG 131
              + E  ++LGA   + S+ QD + A      G ++  +++  +   L   +  L   G
Sbjct: 62  VESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILG 121

Query: 132 KLVLLGAPEKP--LELPAFPLLTGEKIVGGSLIGGLK---ETQEMIDFAAK 177
           K+ ++GAP+     +     LL G K + G + G         E++    +
Sbjct: 122 KIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQ 172

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 73.7 bits (180), Expect = 3e-17
 Identities = 44/173 (25%), Positives = 62/173 (35%), Gaps = 11/173 (6%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           APL++   + C   T Y          PG    V GLGG+G  A+   KA G    +   
Sbjct: 1   APLES-CLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVG 59

Query: 75  SPSKKSEAVERLGADSFLVSRDQDEMQAAM-------GTMDGIIDTVSAVHPLMPLIGLL 127
           +   K      LGA   L  +D D+    +       G    +         +  L    
Sbjct: 60  THKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTY 119

Query: 128 KSQGKLVLLGAPEKPLELPAFP-LLTGEKIVGGSLIGGLK--ETQEMIDFAAK 177
              G  V+LG       LP  P LL   + + GS+ GG K  E   ++D   K
Sbjct: 120 CGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKGEEVSRLVDDYMK 172

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 71.2 bits (173), Expect = 4e-16
 Identities = 28/165 (16%), Positives = 57/165 (34%), Gaps = 8/165 (4%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           +PL+    + C   T Y           G    V GLGG+G   +   KA G    +   
Sbjct: 1   SPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVD 60

Query: 75  SPSKKSEAVERLGADSFLVSRDQDE------MQAAMGTMDGIIDTVSAVHPLMPLIGLLK 128
               K    + +GA   +  +D  +       + + G +D   + +  +  ++  +   +
Sbjct: 61  INKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQ 120

Query: 129 SQG--KLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEM 171
                 +++   P+         LL   +   G++ GG K    +
Sbjct: 121 EAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSV 165

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 70.4 bits (171), Expect = 6e-16
 Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 7/164 (4%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           APLD    L C   T +         +PG    V GLG +G  AV    + G K  +   
Sbjct: 1   APLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVD 60

Query: 75  SPSKKSEAVERLGADSFLVSRDQDE------MQAAMGTMDGIIDTVSAVHPLMPLIGL-L 127
               K E  +  GA  F+   D  E       +   G +D  ++ V  V  +   +   L
Sbjct: 61  LNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCL 120

Query: 128 KSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEM 171
           K  G  VL+G  +          L   +   GS+ GG K    +
Sbjct: 121 KGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGV 164

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 1e-14
 Identities = 31/172 (18%), Positives = 56/172 (32%), Gaps = 8/172 (4%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           APLD    L C   T Y         +PG    V GLGG+G   +   K  G    +   
Sbjct: 1   APLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVD 60

Query: 75  SPSKKSEAVERLGADSFLVSRDQDE------MQAAMGTMDGIIDTVSAVHPLMPLIGLLK 128
               K    +  GA   +  +D  +      ++   G +D   + +  V  +   +    
Sbjct: 61  INKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH 120

Query: 129 SQGKLVLLG--APEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKH 178
               + ++   A            L   +   G+  GG K  + +    +++
Sbjct: 121 KGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEY 172

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 66.4 bits (161), Expect = 2e-14
 Identities = 35/165 (21%), Positives = 57/165 (34%), Gaps = 8/165 (4%)

Query: 15  APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST 74
           AP +    + C   T Y      G  KPG    V GLGG+G   +   K+ G    +   
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 75  SPSKKSEAVERLGADSFLVSRDQDEMQAAMGT-------MDGIIDTVSAVHPLMPLIGLL 127
               K E    +GA   +  +D  +  + + +                    +  L    
Sbjct: 62  LNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCH 121

Query: 128 KSQGKLVLLGAPEKPLELPAFPLLT-GEKIVGGSLIGGLKETQEM 171
            + G  V++G P     L   P+L    +   G + GGLK   ++
Sbjct: 122 MNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDV 166

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 65.5 bits (158), Expect = 5e-14
 Identities = 50/168 (29%), Positives = 75/168 (44%), Gaps = 8/168 (4%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG-LGGLGHVAVKFAKAMGVKVTVIST 74
            ++A APL C+GIT Y  +R   L  P   + VVG  GGLG +AV+ AKA+     +   
Sbjct: 3   AVEA-APLTCSGITTYRAVRKASL-DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVD 60

Query: 75  SPSKKSEAVERLGADSFLVSRDQDEMQA-----AMGTMDGIIDTVSAVHPLMPLIGLLKS 129
              +  EA +R GAD  + +  QD +           +D +ID  ++   L      L  
Sbjct: 61  VREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAK 120

Query: 130 QGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAK 177
           QGK V++G     L   A  +   E    GSL+G   +   ++  A  
Sbjct: 121 QGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEA 168

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 56.8 bits (136), Expect = 7e-11
 Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 10/166 (6%)

Query: 16  PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS 75
           PL+    +     T +       + + G  V V+G+G +G + +  AK  G    +   S
Sbjct: 2   PLENAVMITDMMTTGFHGAELADI-EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS 60

Query: 76  PSKKSEAVERLGADSFLVSRDQDEMQAAMGT-----MDGIIDTVSAVHPLMPLIGLLKSQ 130
                EA +  GA   L  ++       M       +D +I        L   + ++K  
Sbjct: 61  RPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG 120

Query: 131 GKLVLLGAPEKPLELP----AFPLLTGEKIVGGSLIGGLKETQEMI 172
           G +  +        L      +      K + G L  G +   E +
Sbjct: 121 GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERL 166

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 52.2 bits (124), Expect = 4e-09
 Identities = 6/64 (9%), Positives = 14/64 (21%), Gaps = 5/64 (7%)

Query: 3   ADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFA 62
             +  ++++P+         +               LD      G    G      +   
Sbjct: 142 YADFNLLKLPDRDKAMEKINIAEVVGVQV-----ISLDDAPRGYGEFDAGVPKKFVIDPH 196

Query: 63  KAMG 66
           K   
Sbjct: 197 KTFS 200

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 48.8 bits (115), Expect = 5e-08
 Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 19/173 (10%)

Query: 13  EGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVI 72
           EGA      PL           R  G+ + G  V V+G G +G V+V  AKA      V 
Sbjct: 5   EGA---LLEPLSVG----VHACRRAGV-QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVC 55

Query: 73  STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTM---------DGIIDTVSAVHPLMPL 123
           +    ++ E  +  GAD  LV     E ++++            +  ID       +   
Sbjct: 56  TARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIG 115

Query: 124 IGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAA 176
           I + ++ G L+L+G   + + +P       E  +         +    ++  A
Sbjct: 116 INITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSV-FRYCNDYPIALEMVA 167

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 48.1 bits (113), Expect = 1e-07
 Identities = 34/159 (21%), Positives = 58/159 (36%), Gaps = 4/159 (2%)

Query: 21  APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS 80
           A    + +T Y  L+     +PG  V V    G    A            + + S  +K 
Sbjct: 7   AAFPVSFLTAYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL 65

Query: 81  EAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE 140
                LGA+      +  E   A G +D +++       +   +GLL   G+LV +GA E
Sbjct: 66  ALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--KEVEESLGLLAHGGRLVYIGAAE 123

Query: 141 -KPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKH 178
            +   +P   L+     V G  +  L     +++ A   
Sbjct: 124 GEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGF 162

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 8/165 (4%)

Query: 21  APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGG-LGHVAVKFAKAMGVKVTVISTSPSKK 79
           A     G+TVY  LR     KP          G +G +A ++AKA+G K+     +  K 
Sbjct: 7   AASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA 66

Query: 80  SEAVERLGADSFLVSRDQDEMQAAM----GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVL 135
             A++  GA   +  R++D ++       G    ++            +  L+ +G +V 
Sbjct: 67  QSALKA-GAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVS 125

Query: 136 LGAP--EKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKH 178
            G                 G   V    + G   T+E +  A+  
Sbjct: 126 FGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNE 170

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 32/147 (21%), Positives = 52/147 (35%), Gaps = 8/147 (5%)

Query: 41  KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEM 100
             G  V V G G +G V +  AKAMG    V++   + +    + +GAD  L    +   
Sbjct: 25  TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQ 84

Query: 101 QAAM-------GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTG 153
           + A           +  I+   A   +   I   +S G LVL+G   +   +P       
Sbjct: 85  EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIR 144

Query: 154 EKIVGGSLIGGLKETQEMIDFAAKHNI 180
           E  + G            I   A  ++
Sbjct: 145 EVDIKGV-FRYCNTWPVAISMLASKSV 170

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 7/71 (9%), Positives = 18/71 (25%), Gaps = 25/71 (35%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
            ++ E+  V++ +  P D                                   +   A+ 
Sbjct: 146 ALSRENNTVKVTKDFPFDQLVKFYAF-------------------------DEINQAAID 180

Query: 61  FAKAMGVKVTV 71
             K + +K  +
Sbjct: 181 SRKGITLKPII 191

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 8/46 (17%), Positives = 13/46 (28%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHV 46
            V ++  V +I     LD          +V   +      K    V
Sbjct: 151 TVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTV 196

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 28/159 (17%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 21  APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS 80
           A +     T Y  L      K G  V V G  G   +A            + +    +  
Sbjct: 7   AAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ 66

Query: 81  EAVERLGADSFLVSRDQDEMQAAMGTM----DGIIDTVSAVHPLMPLIGLLKSQGKLVLL 136
           + V + GA      R+ + +      +      II  + A   L   + LL   G+++++
Sbjct: 67  KIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVV 126

Query: 137 GAPEKPLELPAFPLLTGEKIVGGSLIGG--LKETQEMID 173
           G+    +E+     +  E  + G  +     +E Q+   
Sbjct: 127 GSRG-TIEINPRDTMAKESSIIGVTLFSSTKEEFQQYAA 164

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 3/49 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV 49
            V  +  V +I     +D       +   +        L   G  +  V
Sbjct: 149 TVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFE---LMHSGKSIRTV 194

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 3/49 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGI-TVYSPLRFYGLDKPGMHVGV 48
           +   EHFVV IPE   ++   P+  AG+   +  +    + +    +  
Sbjct: 139 VRVHEHFVVPIPENIWVET-LPVGEAGVHEAFERMEKGDV-RYRFTLVG 185

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 39.5 bits (91), Expect = 1e-04
 Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 3/50 (6%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG 50
            V  E  + R+ +   LD          ++   +    L K G  +  + 
Sbjct: 154 TVVSEANLARVDDEFDLDLLVTHALPFESINDAID---LMKEGKSIRTIL 200

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 22/163 (13%), Positives = 45/163 (27%), Gaps = 15/163 (9%)

Query: 21  APLLCAGITVYSPLRFYGLDKPGMHVGVVGL--GGLGHVAVKFAKAMGVKVTVISTSPSK 78
           A +    +T Y  L  Y    PG    +       +G  A +  K +      +      
Sbjct: 7   ATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN 66

Query: 79  ---KSEAVERLGADSFLVSRDQDEMQ----------AAMGTMDGIIDTVSAVHPLMPLIG 125
                 +++ LGA   +     +  +           + G     ++ V           
Sbjct: 67  LDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARK 126

Query: 126 LLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKET 168
           L  +   L   G   +P+ +P    +       G  +  L + 
Sbjct: 127 LNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKN 169

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.2 bits (85), Expect = 4e-04
 Identities = 10/60 (16%), Positives = 17/60 (28%), Gaps = 3/60 (5%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVK 60
                 ++V +P+   L          I           + PG    ++     G V VK
Sbjct: 105 ASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSL---EETPGALKDILQNRIQGRVIVK 161

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 5/56 (8%), Positives = 11/56 (19%), Gaps = 10/56 (17%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGH 56
            V  +  V +I     ++           +               +   G G    
Sbjct: 150 TVVADIAVAKIDPKINVNFLVSTKLTLDQI----------NKAFELLSSGQGVRSI 195

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 33/178 (18%), Positives = 56/178 (31%), Gaps = 10/178 (5%)

Query: 21  APLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKS 80
           A    A +T +  L   G   PG  V +    G   +A      M       +     K 
Sbjct: 4   ATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR 63

Query: 81  EAVERLGADSFLVSRDQDEMQAAMGTMDG----IIDTVSAVHPLMPLIGLLKSQGKLVLL 136
           E + RLG +    SR  D     +   DG    ++    A   +   + +L   G+ + L
Sbjct: 64  EMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIEL 123

Query: 137 GAP--EKPLELPAFPLLTGEKIVG----GSLIGGLKETQEMIDFAAKHNIRADIEVIP 188
           G         L    L             +L       ++++    +H     +EV+P
Sbjct: 124 GKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVLP 181

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 8/49 (16%), Positives = 17/49 (34%), Gaps = 2/49 (4%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV 49
           ++AD ++V  +P+          L     +   +R       G  V  +
Sbjct: 129 VLADPNYVGILPKNVKATIHPGKLDDINQILDQMR--AGQIEGRIVLEM 175

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 7/129 (5%)

Query: 16  PLD-ATAPLLCAGITVYSPLRFYGLDKPGMHVGV-VGLGGLGHVAVKFAKAMGVKVTVIS 73
           PL  A   +   G+T Y  L      K G  V V    G +G V  + AK  G KV   +
Sbjct: 2   PLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAA 61

Query: 74  TSPSKKSEAVERLGADSFLVSR----DQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKS 129
            S  K +   +     +F        ++   +A+    D   D V         +  +K 
Sbjct: 62  GSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTV-LSQMKD 120

Query: 130 QGKLVLLGA 138
            GK+ + GA
Sbjct: 121 FGKIAICGA 129

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 1   MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVG 50
             A   +VV+IP+   ++   PL          L+       G  V  + 
Sbjct: 124 CRAAADYVVKIPDNTIIEV-QPLEKINEVFDRMLKG---QINGRVVLTLE 169

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.98
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.97
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.97
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.97
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.97
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.97
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.97
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.97
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.96
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.96
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.96
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.96
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.96
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.96
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.96
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.96
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.95
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.95
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.95
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.94
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.94
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.94
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.94
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.94
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.92
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.92
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.92
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.9
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.59
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.97
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.86
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	98.66
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.61
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	98.61
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	98.57
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	98.55
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	98.52
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	98.47
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	98.46
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.43
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	98.43
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	98.42
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	98.41
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	98.39
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.39
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	98.37
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	98.37
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	98.36
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	98.36
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	98.36
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	98.34
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	98.33
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	98.31
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	98.3
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	98.29
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.28
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	98.28
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.27
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.27
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	98.26
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	98.25
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	98.24
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	98.24
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.23
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.22
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.21
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	98.18
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	98.17
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.13
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	98.13
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	98.12
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	98.09
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	98.08
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.07
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.07
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.06
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	98.06
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	98.05
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	98.05
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	98.03
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	98.01
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.01
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	98.01
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.98
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.97
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.97
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.97
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.96
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.96
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.95
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.94
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.93
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.92
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.91
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	97.9
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.89
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.89
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.88
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.87
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.86
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.86
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.85
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.85
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.84
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	97.83
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.83
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.83
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.82
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.81
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	97.75
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.75
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	97.74
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.72
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.71
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.71
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.69
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.67
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.66
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.61
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.61
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	97.58
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.57
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.55
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.54
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	97.54
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	97.52
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.49
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	97.47
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.47
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.47
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.47
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.46
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.46
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.45
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.45
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	97.43
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.42
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	97.42
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.42
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.41
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	97.4
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	97.39
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.39
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	97.39
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.37
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.34
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	97.33
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.32
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.32
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.29
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.29
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.28
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.27
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	97.27
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	97.26
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.26
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.25
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.24
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.23
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.22
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	97.21
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.2
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.19
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.16
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.14
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.1
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.09
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.07
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.05
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.01
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.01
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.01
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.0
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.99
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.98
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.98
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.97
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.95
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	96.95
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	96.94
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.93
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.9
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.87
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.85
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.84
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	96.84
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.84
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.82
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.82
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	96.77
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.77
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	96.77
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.76
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.75
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.74
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.74
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	96.74
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.73
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.73
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	96.73
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.72
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.71
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	96.68
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.68
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.67
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.67
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.66
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.66
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.63
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.63
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.63
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	96.63
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.62
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.61
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.59
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.57
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	96.57
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.55
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	96.5
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.5
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	96.48
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.47
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.46
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.45
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.42
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.4
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	96.4
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	96.38
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.38
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.37
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.34
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.32
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.32
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.32
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.29
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.29
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.28
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.26
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.24
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.23
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	96.23
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	96.22
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.21
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.21
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	96.2
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.19
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.18
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.18
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.17
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	96.17
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.17
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	96.15
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.14
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.13
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	96.12
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	96.12
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.09
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.09
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.08
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.06
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	96.03
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	96.02
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.02
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.01
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.98
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	95.98
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	95.95
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.92
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.9
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.89
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.88
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.87
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	95.86
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	95.84
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	95.83
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	95.74
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.71
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	95.71
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	95.66
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.65
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.63
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	95.6
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	95.59
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.59
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.59
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.58
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	95.52
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.51
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	95.49
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	95.49
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	95.48
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	95.47
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.46
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.46
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	95.46
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.42
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	95.4
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.38
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.36
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	95.36
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.35
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	95.35
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.34
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.33
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	95.33
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.32
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	95.29
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	95.27
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.26
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	95.24
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.22
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	95.22
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	95.2
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	95.17
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.07
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.06
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.06
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	95.04
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.01
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.0
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.97
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	94.96
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	94.92
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	94.92
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	94.92
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	94.91
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	94.91
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.87
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	94.8
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	94.78
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	94.72
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	94.7
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	94.62
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	94.59
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	94.58
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	94.56
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.56
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	94.54
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	94.5
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	94.45
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	94.44
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.43
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.42
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	94.41
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.34
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	94.32
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	94.31
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	94.29
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.25
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	94.22
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	94.18
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	94.12
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.04
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	94.03
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	94.03
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	94.0
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	93.99
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.92
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	93.88
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	93.88
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	93.82
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	93.75
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	93.75
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	93.54
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.54
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	93.53
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.51
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.43
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	93.19
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	93.18
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.11
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	93.1
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.07
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	93.04
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	93.02
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.0
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	92.94
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.83
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	92.77
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.63
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	92.58
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	92.5
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	92.4
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	92.31
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	92.17
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	92.12
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.11
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	92.07
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	91.97
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.86
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	91.83
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	91.52
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	91.49
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	91.25
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.24
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	91.24
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	91.23
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	91.13
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	91.04
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	90.73
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	90.7
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.69
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	90.67
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	90.55
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	90.43
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	90.41
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	90.25
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.19
d1jzta_	243	Hypothetical protein YNL200c (YNU0_YEAST) {Baker's	90.01
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.93
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	89.59
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	89.59
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	89.43
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	89.42
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	89.21
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	89.18
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	89.17
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	88.95
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	88.79
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	88.61
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	88.55
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	88.38
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	88.14
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	87.94
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	87.54
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	87.53
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	87.06
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	87.01
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	86.91
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	86.78
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	86.78
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	86.56
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	86.52
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.24
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	86.08
d1ydhb_	181	Hypothetical protein At5g11950 {Thale cress (Arabi	86.04
d1zn7a1	178	Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]	86.01
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	85.94
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	85.78
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.66
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	84.93
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	84.82
d1t35a_	179	Hypothetical protein YvdD {Bacillus subtilis [TaxI	84.74
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	84.47
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	84.08
d1euca1	130	Succinyl-CoA synthetase, alpha-chain, N-terminal (	83.99
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	83.12
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	82.65
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	82.37
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	82.05
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	81.72
d1qb7a_	236	Adenine PRTase {Leishmania donovani [TaxId: 5661]}	81.48
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	81.47
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	80.88
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	80.82
d1g2qa_	178	Adenine PRTase {Baker's yeast (Saccharomyces cerev	80.66
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	80.65
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	80.51
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	80.33
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	80.05

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.7e-32  Score=192.39  Aligned_cols=164  Identities=33%  Similarity=0.550  Sum_probs=144.7

Q ss_pred             CcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCC
Q 027668           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSR   95 (220)
Q Consensus        16 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~   95 (220)
                      |++.||++.|++.|+|+++++.. ++||++|+|+|+|++|++++|+++.+|++|+++++++++++.+ +++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al~~~~-~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a-~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVRNG-CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDA-MKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHHTT-CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHH-HHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhC-cCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHh-hccCCcEEeecc
Confidence            45678999999999999998754 8999999999999999999999999999999999999888776 789999998876


Q ss_pred             CH-HHHHHhcCCccEEEEcCCCcc--cHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHH
Q 027668           96 DQ-DEMQAAMGTMDGIIDTVSAVH--PLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMI  172 (220)
Q Consensus        96 ~~-~~~~~~~~~~d~vid~~g~~~--~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  172 (220)
                      +. +..++..+++|.++||++...  .+..++++++++|+++.+|.+....+++..+++.+++++.|+..++++++++++
T Consensus        80 ~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~~~e~l  159 (168)
T d1piwa2          80 EEGDWGEKYFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLL  159 (168)
T ss_dssp             GTSCHHHHSCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCCCCHHHHHHHH
T ss_pred             chHHHHHhhhcccceEEEEecCCccchHHHHHHHhhccceEEEeccccccccccHHHHHhCCcEEEEEeeCCHHHHHHHH
Confidence            53 445555669999999987653  467899999999999999988777788888899999999999999999999999


Q ss_pred             HHHHhCCcc
Q 027668          173 DFAAKHNIR  181 (220)
Q Consensus       173 ~~~~~~~~~  181 (220)
                      +++++|+++
T Consensus       160 ~li~~gkIk  168 (168)
T d1piwa2         160 KLVSEKDIK  168 (168)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHhCCCC
Confidence            999999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=9.4e-32  Score=190.09  Aligned_cols=162  Identities=34%  Similarity=0.619  Sum_probs=145.0

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecC
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~   94 (220)
                      +|+++||+++|++.|||+++++.. ++||++|+|+|+|++|++++|+++.+|++|+++++++++++.+ +++|++.++++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~~~-~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a-~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQTN-ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELA-RKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhh-hccCccccccc
Confidence            578999999999999999998754 8999999999999999999999999999999999998887666 78999999988


Q ss_pred             CCHHH---HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHH
Q 027668           95 RDQDE---MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEM  171 (220)
Q Consensus        95 ~~~~~---~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  171 (220)
                      .+.+.   +.+...+++.++++++..+.++.++++++++|+++.+|.+.+..+++..+++.+++++.|+..+++++++++
T Consensus        79 ~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~~~~~d~~e~  158 (166)
T d1llua2          79 RQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEA  158 (166)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHH
T ss_pred             cchhHHHHHHHhhcCCcccccccccchHHHHHHHHhcCCcEEEEEEecCCCccCCHHHHHhCCcEEEEEeecCHHHHHHH
Confidence            77543   334445788888888888889999999999999999998877788888899999999999999999999999


Q ss_pred             HHHHHhC
Q 027668          172 IDFAAKH  178 (220)
Q Consensus       172 ~~~~~~~  178 (220)
                      ++++++|
T Consensus       159 l~l~~~G  165 (166)
T d1llua2         159 LDFAGEG  165 (166)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHCc
Confidence            9999987

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.6e-31  Score=187.33  Aligned_cols=164  Identities=49%  Similarity=0.819  Sum_probs=142.1

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecC
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~   94 (220)
                      .++..+|+++|++.|+|+++++. .++||++|+|+|+|++|++++|+++.+|++++++++++++++.+ +++|++.++++
T Consensus         4 ~~~a~~Apl~Cag~Tay~al~~~-~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a-~~lGad~~i~~   81 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPLRHW-QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA-KALGADEVVNS   81 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHTCSEEEET
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHh-CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH-hccCCcEEEEC
Confidence            45677889999999999999764 58999999999999999999999999999999999988877655 89999999999


Q ss_pred             CCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccCCcEEEEeeccCHHHHHHHHH
Q 027668           95 RDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTGEKIVGGSLIGGLKETQEMID  173 (220)
Q Consensus        95 ~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  173 (220)
                      .+.+...+..+++|++|||+|.+..+..++++++++|+++.+|...+. ..++...++.+++++.|+..++..+++++++
T Consensus        82 ~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~~~d~~e~l~  161 (168)
T d1uufa2          82 RNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLD  161 (168)
T ss_dssp             TCHHHHHTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHHH
T ss_pred             chhhHHHHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeecCHHHHHHHHH
Confidence            988776665569999999999988899999999999999999986653 4567777888999999999999999999999


Q ss_pred             HHHhCCc
Q 027668          174 FAAKHNI  180 (220)
Q Consensus       174 ~~~~~~~  180 (220)
                      +++++.|
T Consensus       162 l~a~~~I  168 (168)
T d1uufa2         162 FCAEHGI  168 (168)
T ss_dssp             HHHHHTC
T ss_pred             HHHHcCC
Confidence            9998764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.97  E-value=5.5e-31  Score=186.82  Aligned_cols=163  Identities=29%  Similarity=0.374  Sum_probs=144.8

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEe
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFL   92 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~   92 (220)
                      +|+.+||+++|++.|||+++++.. ++||++|+|+|+ |++|++++|+++.+|+ +|++++.++++++.+ +++|++.++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~-~~~Ga~~~i   78 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAA-KRAGADYVI   78 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHH-HHHTCSEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHH-HHcCCceee
Confidence            578899999999999999998765 899999999996 9999999999999997 888888888877666 789999998


Q ss_pred             cCCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHH
Q 027668           93 VSRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKE  167 (220)
Q Consensus        93 ~~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  167 (220)
                      ++.+.+   .+.+.+.  ++|++|||+|....++.++++++++|+++.+|......+++...++++++++.|+..+++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs~~~~~~d  158 (170)
T d1jvba2          79 NASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSD  158 (170)
T ss_dssp             ETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECCSCCHHH
T ss_pred             ccCCcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHHHhCCcEEEEEecCCHHH
Confidence            877643   3444443  79999999999878899999999999999999988778899989999999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 027668          168 TQEMIDFAAKHN  179 (220)
Q Consensus       168 ~~~~~~~~~~~~  179 (220)
                      ++++++++++|+
T Consensus       159 ~~~~l~lv~~GK  170 (170)
T d1jvba2         159 FLGIMRLAEAGK  170 (170)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCC
Confidence            999999999985

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=1.8e-30  Score=183.87  Aligned_cols=165  Identities=32%  Similarity=0.583  Sum_probs=148.4

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecC
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~   94 (220)
                      +|+++||++++++.|||+++++.. ++||++|||+|+|++|++++|+++..|++|++++.++++++.+ +++|++.++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~~~-~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~-k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA-KELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHT-CCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhh-hhcCcceeccc
Confidence            588999999999999999998766 8999999999999999999999999999999999998887766 78999999988


Q ss_pred             CCH---HHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHH
Q 027668           95 RDQ---DEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEM  171 (220)
Q Consensus        95 ~~~---~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  171 (220)
                      .+.   +.+++.+.+.+.++++++....+..++++++++|+++.+|...+..+++...++.+++++.|+..+++++++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~~~~~~  158 (168)
T d1rjwa2          79 LKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEA  158 (168)
T ss_dssp             TTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHH
T ss_pred             ccchhhhhcccccCCCceEEeecCCHHHHHHHHHHhccCCceEecccccCCCCCCHHHHHHCCcEEEEEeeCCHHHHHHH
Confidence            764   34555667777788888887789999999999999999999888788888889999999999999999999999


Q ss_pred             HHHHHhCCcc
Q 027668          172 IDFAAKHNIR  181 (220)
Q Consensus       172 ~~~~~~~~~~  181 (220)
                      ++++++|+++
T Consensus       159 l~l~~~Gkik  168 (168)
T d1rjwa2         159 LQFAAEGKVK  168 (168)
T ss_dssp             HHHHHTTSCC
T ss_pred             HHHHHhCCCC
Confidence            9999999874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.97  E-value=3.6e-30  Score=183.01  Aligned_cols=164  Identities=21%  Similarity=0.264  Sum_probs=139.6

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCe-EEEEeCCcccHHHHHHHcCCcEEec
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVK-VTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~~g~~~v~~   93 (220)
                      ++++.|++++|++.|||+++.+...++||++|+|+|+|++|++++|+++.+|++ +++++.++++++.+ +++|++++++
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a-~~~Ga~~~i~   79 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELA-KQLGATHVIN   79 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH-HHHTCSEEEE
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHH-HHcCCeEEEe
Confidence            357789999999999999988877799999999999999999999999999995 55666666666555 8999999998


Q ss_pred             CCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccccccCCcEEEEeeccC---
Q 027668           94 SRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFPLLTGEKIVGGSLIGG---  164 (220)
Q Consensus        94 ~~~~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~~---  164 (220)
                      ++++   +.++++++ ++|+||||+|....++.+++.++++|+++++|.+..  ..+++...++.+++++.|+..++   
T Consensus        80 ~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~  159 (174)
T d1f8fa2          80 SKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSP  159 (174)
T ss_dssp             TTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCH
T ss_pred             CCCcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCCCh
Confidence            8774   45556665 899999999998888999999999999999998653  35788888899999999997543   


Q ss_pred             HHHHHHHHHHHHhCC
Q 027668          165 LKETQEMIDFAAKHN  179 (220)
Q Consensus       165 ~~~~~~~~~~~~~~~  179 (220)
                      +++++++++++++|+
T Consensus       160 ~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         160 KKFIPELVRLYQQGK  174 (174)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCC
Confidence            577999999999885

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.97  E-value=8.5e-30  Score=180.84  Aligned_cols=161  Identities=31%  Similarity=0.458  Sum_probs=139.4

Q ss_pred             cccccccchhhhhhhhhhHhcc-CCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecC
Q 027668           17 LDATAPLLCAGITVYSPLRFYG-LDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        17 ~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~   94 (220)
                      +.++|+++++++|||+++.+.. .++||++|+|+|+|++|++++|+++.+|+ .|++++.++++++.+ +++|++.++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~-~~~ga~~~i~~   84 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLA-ERLGADHVVDA   84 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHH-HHTTCSEEEET
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHH-hhcccceeecC
Confidence            5678899999999999998875 37999999999999999999999999998 667777777766555 78999999988


Q ss_pred             CCH--HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHH
Q 027668           95 RDQ--DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQE  170 (220)
Q Consensus        95 ~~~--~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  170 (220)
                      .+.  +...+.++  ++|+||||+|....++.++++++++|+++.+|... ..+++...++++++++.|+..+++.++++
T Consensus        85 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~-~~~~~~~~l~~k~~~i~Gs~~~~~~d~~~  163 (172)
T d1h2ba2          85 RRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGG-ELRFPTIRVISSEVSFEGSLVGNYVELHE  163 (172)
T ss_dssp             TSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSS-CCCCCHHHHHHTTCEEEECCSCCHHHHHH
T ss_pred             cccHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcc-cccCCHHHHHhCCcEEEEEEecCHHHHHH
Confidence            763  33444443  89999999999877999999999999999999744 57888888999999999999999999999


Q ss_pred             HHHHHHhCC
Q 027668          171 MIDFAAKHN  179 (220)
Q Consensus       171 ~~~~~~~~~  179 (220)
                      +++++++|+
T Consensus       164 ~l~l~~~GK  172 (172)
T d1h2ba2         164 LVTLALQGK  172 (172)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHcCC
Confidence            999999985

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.97  E-value=1.4e-29  Score=181.36  Aligned_cols=161  Identities=24%  Similarity=0.384  Sum_probs=138.3

Q ss_pred             cccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCC
Q 027668           17 LDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSR   95 (220)
Q Consensus        17 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~   95 (220)
                      ++.+|++.|.+.|||+++.+...+++|++|||+|+|++|++++|+++.+|+ +|+++++++++++.+ +++|++.++++.
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~lGa~~vi~~~   81 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEIGADLTLNRR   81 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHTTCSEEEETT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheeccccccccccccccccccccccc-ccccceEEEecc
Confidence            456788999999999999888889999999999999999999999999999 799999999887666 899999999887


Q ss_pred             CH---H---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC--CcccCccc-cccCCcEEEEeeccC
Q 027668           96 DQ---D---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK--PLELPAFP-LLTGEKIVGGSLIGG  164 (220)
Q Consensus        96 ~~---~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~--~~~~~~~~-~~~~~~~i~~~~~~~  164 (220)
                      +.   +   .+.+.++  |+|+||||+|.+..++.++++++++|+++++|....  ..+++.+. +++|++++.|+..++
T Consensus        82 ~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~  161 (182)
T d1vj0a2          82 ETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD  161 (182)
T ss_dssp             TSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC
T ss_pred             ccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCC
Confidence            63   2   2344443  799999999998788999999999999999997643  34455443 678999999999999


Q ss_pred             HHHHHHHHHHHHhC
Q 027668          165 LKETQEMIDFAAKH  178 (220)
Q Consensus       165 ~~~~~~~~~~~~~~  178 (220)
                      ..++++++++++++
T Consensus       162 ~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         162 TSHFVKTVSITSRN  175 (182)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHC
Confidence            99999999999876

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.3e-30  Score=181.00  Aligned_cols=161  Identities=22%  Similarity=0.281  Sum_probs=139.0

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEec
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~   93 (220)
                      +|+++||++++++.|||+++.+...++||++|||+|+ |++|++++|+++.+|++|+++++++++++.+ +++|++.++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~-~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccc-cccCcccccc
Confidence            5789999999999999999988878999999999996 9999999999999999999999988776555 7899999999


Q ss_pred             CCCHH---HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeecc--CHH
Q 027668           94 SRDQD---EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIG--GLK  166 (220)
Q Consensus        94 ~~~~~---~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~  166 (220)
                      +++.+   .+++.++  ++|++|||+|.. .++.++++++++|+++.+|... ..++++..++.+++++.|+..+  +.+
T Consensus        80 ~~~~~~~~~i~~~t~~~g~d~v~d~~g~~-~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~  157 (174)
T d1yb5a2          80 HREVNYIDKIKKYVGEKGIDIIIEMLANV-NLSKDLSLLSHGGRVIVVGSRG-TIEINPRDTMAKESSIIGVTLFSSTKE  157 (174)
T ss_dssp             TTSTTHHHHHHHHHCTTCEEEEEESCHHH-HHHHHHHHEEEEEEEEECCCCS-CEEECTHHHHTTTCEEEECCGGGCCHH
T ss_pred             cccccHHHHhhhhhccCCceEEeecccHH-HHHHHHhccCCCCEEEEEecCC-CCCCCHHHHHHCCCEEEEEEecCCCHH
Confidence            88754   4444544  799999999975 6899999999999999999744 5677788888999999998654  567


Q ss_pred             HHHHHHHHHHhC
Q 027668          167 ETQEMIDFAAKH  178 (220)
Q Consensus       167 ~~~~~~~~~~~~  178 (220)
                      +++++.++++++
T Consensus       158 ~~~~~~~~l~~g  169 (174)
T d1yb5a2         158 EFQQYAAALQAG  169 (174)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888887765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.4e-29  Score=176.98  Aligned_cols=163  Identities=23%  Similarity=0.230  Sum_probs=139.1

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEec
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~   93 (220)
                      +|+++||.+ .++.+||+++++.. ++||++|+|+|+|++|++++|+++.+|+ +|+++++++++++.+ +++|++.+++
T Consensus         1 vS~e~Aal~-epla~a~~a~~~~~-~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a-~~~Ga~~~~~   77 (171)
T d1pl8a2           1 VTFEEGALI-EPLSVGIHACRRGG-VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKA-KEIGADLVLQ   77 (171)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCSEEEE
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHhC-CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHH-HHhCCccccc
Confidence            477888855 46678899998875 8999999999999999999999999999 799999998887766 8999998887


Q ss_pred             CCCHH---HHHHh---c-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHH
Q 027668           94 SRDQD---EMQAA---M-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLK  166 (220)
Q Consensus        94 ~~~~~---~~~~~---~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  166 (220)
                      ..+.+   ..+..   . .++|++|||+|.+..++.++++++++|+++++|.+....+++...+++|++++.|+..+ .+
T Consensus        78 ~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~~~-~~  156 (171)
T d1pl8a2          78 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRY-CN  156 (171)
T ss_dssp             CSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSC-SS
T ss_pred             ccccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEeCC-Hh
Confidence            76532   22222   2 28999999999988899999999999999999998877889999999999999999765 45


Q ss_pred             HHHHHHHHHHhCCcc
Q 027668          167 ETQEMIDFAAKHNIR  181 (220)
Q Consensus       167 ~~~~~~~~~~~~~~~  181 (220)
                      +|+++++++++|+++
T Consensus       157 ~~~~al~li~~gkid  171 (171)
T d1pl8a2         157 TWPVAISMLASKSVN  171 (171)
T ss_dssp             CHHHHHHHHHTTSCC
T ss_pred             HHHHHHHHHHcCCCC
Confidence            799999999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.96  E-value=9.4e-29  Score=175.10  Aligned_cols=162  Identities=19%  Similarity=0.309  Sum_probs=133.5

Q ss_pred             CcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecC
Q 027668           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        16 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~   94 (220)
                      ++++||++.|++.|+|+++.+...+++|++|+|+|+|++|++++|+++.+|+ +|++++.+++|+ ++++++|++.++++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~~Ga~~~i~~   80 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKALGATDCLNP   80 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCSEEECG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHHhCCCcccCC
Confidence            5788999999999999998777779999999999999999999999999999 677777777666 45589999999876


Q ss_pred             CCH----HHHH-Hhc-CCccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCCCcccCccccccCCcEEEEeeccC---
Q 027668           95 RDQ----DEMQ-AAM-GTMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGG---  164 (220)
Q Consensus        95 ~~~----~~~~-~~~-~~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~---  164 (220)
                      ...    .... ... +|+|++|||+|.+.+++.++++++++ |+++.+|.+.+..+++...++ .+.++.|+..++   
T Consensus        81 ~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~~~i~~~~~~-~~k~i~Gs~~Gs~~~  159 (174)
T d1e3ia2          81 RELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVI-LGRSINGTFFGGWKS  159 (174)
T ss_dssp             GGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHH-TTCEEEECSGGGCCH
T ss_pred             ccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCccccchHHHh-ccCEEEEEEeeCCCh
Confidence            432    2222 223 39999999999998899999999996 999999998776777776654 367899887643   


Q ss_pred             HHHHHHHHHHHHhCC
Q 027668          165 LKETQEMIDFAAKHN  179 (220)
Q Consensus       165 ~~~~~~~~~~~~~~~  179 (220)
                      .++++++++++.+|+
T Consensus       160 ~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         160 VDSVPNLVSDYKNKK  174 (174)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHCcC
Confidence            577888999988874

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=3.6e-29  Score=176.90  Aligned_cols=166  Identities=18%  Similarity=0.245  Sum_probs=136.4

Q ss_pred             CCcccccccchhhhhhhhhhH---hccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE
Q 027668           15 APLDATAPLLCAGITVYSPLR---FYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS   90 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~   90 (220)
                      +|+++||++++++.|||++++   ..+..++|++|||+|+ |++|.+++|+++..|++|+++++++++.+.+ +++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~-~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYL-RVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHH-HHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHH-Hhcccce
Confidence            588999999999999997765   4566788999999996 9999999999999999999999999887666 7899999


Q ss_pred             EecCCCH--HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCCcEEEEe--eccC
Q 027668           91 FLVSRDQ--DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGEKIVGGS--LIGG  164 (220)
Q Consensus        91 v~~~~~~--~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~~~i~~~--~~~~  164 (220)
                      ++++++.  +..+...+ ++|+|||++|+. .+...+++|+++|+++.+|...+ ..+++..+++.|++++.|.  ...+
T Consensus        80 vi~~~~~~~~~~~~~~~~gvD~vid~vgg~-~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~~~~~  158 (176)
T d1xa0a2          80 VLAREDVMAERIRPLDKQRWAAAVDPVGGR-TLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCP  158 (176)
T ss_dssp             EEECC---------CCSCCEEEEEECSTTT-THHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCC
T ss_pred             eeecchhHHHHHHHhhccCcCEEEEcCCch-hHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEeCCcCC
Confidence            9988753  22222223 899999999998 69999999999999999998754 4688889999999999995  4456


Q ss_pred             HHHHHHHHHHHHhCCccee
Q 027668          165 LKETQEMIDFAAKHNIRAD  183 (220)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~  183 (220)
                      .+....+++.++ ++++|.
T Consensus       159 ~~~~~~~~~~la-g~lkP~  176 (176)
T d1xa0a2         159 MDLRLRIWERLA-GDLKPD  176 (176)
T ss_dssp             HHHHHHHHHHHH-TTTCCC
T ss_pred             HHHHHHHHHHHh-cccCCC
Confidence            677777777764 777763

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.96  E-value=1.5e-28  Score=174.23  Aligned_cols=161  Identities=24%  Similarity=0.250  Sum_probs=135.3

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecC
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~   94 (220)
                      +|+++||.+ .++.+||+++++.. +++|++|+|+|+|++|++++|+++.+|++|+++++++++++.+ +++|++.++..
T Consensus         1 VS~e~Aal~-ePla~a~~a~~~~~-~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a-~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALL-EPLSVGVHACRRAG-VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVA-KNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTH-HHHHHHHHHHHHHT-CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHTTCSEEEEC
T ss_pred             CCHHHHHHH-HHHHHHHHHHHHhC-CCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHH-HHcCCcEEEec
Confidence            478888865 35678899998776 8999999999999999999999999999999999999888666 78999776644


Q ss_pred             CC----H-H---HHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCH
Q 027668           95 RD----Q-D---EMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGL  165 (220)
Q Consensus        95 ~~----~-~---~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~  165 (220)
                      +.    . +   .+++..+ ++|+||||+|.+..++.++++++++|+++.+|.+....+++...++.+++++.|+..+. 
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~gs~~~~-  156 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYC-  156 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSCS-
T ss_pred             cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCHHHHHHCCCEEEEEECCH-
Confidence            32    1 2   2222233 89999999999878899999999999999999988777888888999999999997654 


Q ss_pred             HHHHHHHHHHHhCC
Q 027668          166 KETQEMIDFAAKHN  179 (220)
Q Consensus       166 ~~~~~~~~~~~~~~  179 (220)
                      ++|+++++++++|+
T Consensus       157 ~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         157 NDYPIALEMVASGR  170 (170)
T ss_dssp             SCHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCC
Confidence            57999999999885

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.96  E-value=4e-28  Score=172.07  Aligned_cols=162  Identities=26%  Similarity=0.329  Sum_probs=131.8

Q ss_pred             cccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCC
Q 027668           17 LDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSR   95 (220)
Q Consensus        17 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~   95 (220)
                      +.+||++.|++.|+|+++.+...++||++|+|+|+|++|++++|+++++|+ +|++++.++++++.+ +++|+++++|+.
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a-~~lGa~~~i~~~   80 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKA-IELGATECLNPK   80 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHTTCSEEECGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHH-HHcCCcEEEcCC
Confidence            567899999999999998777779999999999999999999999999998 788888888877666 899999999865


Q ss_pred             CH----HHH-HHhcC-CccEEEEcCCCcccHHHHHhcccc-CCEEEEecCCCCCcccCccc-cccCCcEEEEeeccC--H
Q 027668           96 DQ----DEM-QAAMG-TMDGIIDTVSAVHPLMPLIGLLKS-QGKLVLLGAPEKPLELPAFP-LLTGEKIVGGSLIGG--L  165 (220)
Q Consensus        96 ~~----~~~-~~~~~-~~d~vid~~g~~~~~~~~~~~l~~-~g~iv~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~~--~  165 (220)
                      +.    +.. +..++ ++|++|||+|....+..++..+++ +|+++.+|......+++..+ ++.+++++.|+..++  .
T Consensus        81 ~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~  160 (174)
T d1p0fa2          81 DYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKG  160 (174)
T ss_dssp             GCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTCEEEECSGGGCCG
T ss_pred             CchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHhCCCEEEEEEeCCCCH
Confidence            42    222 23333 899999999998888888888876 59999999876554454432 345788999997543  5


Q ss_pred             HHHHHHHHHHHhCC
Q 027668          166 KETQEMIDFAAKHN  179 (220)
Q Consensus       166 ~~~~~~~~~~~~~~  179 (220)
                      ++++++++++.+|+
T Consensus       161 ~d~~~lidl~~~gK  174 (174)
T d1p0fa2         161 EEVSRLVDDYMKKK  174 (174)
T ss_dssp             GGHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHcCC
Confidence            68999999999874

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.96  E-value=1.2e-28  Score=174.71  Aligned_cols=163  Identities=18%  Similarity=0.211  Sum_probs=134.3

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEec
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~   93 (220)
                      +|+++|+.+++.+.|+|++++.. .++||++|+|+|+|++|++++|+++.+|+ +|++++.+++|++.+ +++|++++++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~a-~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a-~~lGa~~~i~   78 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAELA-DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAA-KFYGATDILN   78 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHHT-TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHH-HHHTCSEEEC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHh-CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHH-HhhCcccccc
Confidence            57899999999999999999775 58999999999999999999999999999 788888888776555 8999999998


Q ss_pred             CCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccC--c--cccccCCcEEEEeeccC
Q 027668           94 SRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELP--A--FPLLTGEKIVGGSLIGG  164 (220)
Q Consensus        94 ~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~--~--~~~~~~~~~i~~~~~~~  164 (220)
                      +.+.   +.+.+.++  |+|+||||+|.+..++.++++++++|+++.+|.......++  .  +....+++++.++....
T Consensus        79 ~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  158 (174)
T d1jqba2          79 YKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPG  158 (174)
T ss_dssp             GGGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCCCC
T ss_pred             ccchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecCCC
Confidence            8763   45556664  79999999999878999999999999999999876543322  2  22356789999987765


Q ss_pred             H-HHHHHHHHHHHhCC
Q 027668          165 L-KETQEMIDFAAKHN  179 (220)
Q Consensus       165 ~-~~~~~~~~~~~~~~  179 (220)
                      . ..++.+.++++.|+
T Consensus       159 ~r~~~e~l~~li~~gk  174 (174)
T d1jqba2         159 GRLRAERLRDMVVYNR  174 (174)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             CcccHHHHHHHHHcCC
Confidence            4 44677778888774

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=9.3e-29  Score=175.04  Aligned_cols=146  Identities=27%  Similarity=0.388  Sum_probs=121.2

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEec
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~   93 (220)
                      +|+++||++++++.|||+++++ ..++||++|||+|+ |++|++++|+++.+|++|+++++++++++.+ +++|++.+++
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~-~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~-~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKR-AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP-LALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHH-TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH-HHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccc-cccccceeee
Confidence            5789999999999999999987 46899999999996 9999999999999999999999998877666 7899999998


Q ss_pred             CCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCCcEEEEeeccC
Q 027668           94 SRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGEKIVGGSLIGG  164 (220)
Q Consensus        94 ~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~  164 (220)
                      +.+........+|+|+||||+|.  .+..++++++++|+++.+|...+ ..+++...++.|++++.|+...+
T Consensus        79 ~~~~~~~~~~~~g~D~v~d~~G~--~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~~  148 (171)
T d1iz0a2          79 YAEVPERAKAWGGLDLVLEVRGK--EVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTP  148 (171)
T ss_dssp             GGGHHHHHHHTTSEEEEEECSCT--THHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHH
T ss_pred             hhhhhhhhhccccccccccccch--hHHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCcC
Confidence            87643222223489999999884  58999999999999999998754 45788888899999999987643

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=9.3e-28  Score=172.05  Aligned_cols=163  Identities=20%  Similarity=0.270  Sum_probs=134.2

Q ss_pred             ccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCC
Q 027668           18 DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD   96 (220)
Q Consensus        18 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~   96 (220)
                      ++||+++++++|||+++.+...+++|++|||+|+ |++|++++|+|+.+|++++++++++++.+.+ +++|++.++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l-~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML-SRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccc-ccccccccccCCc
Confidence            5789999999999999988888999999999986 9999999999999999999999988877655 7899999998877


Q ss_pred             H---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcc-cCccccccCCcEEEEeeccC------
Q 027668           97 Q---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLE-LPAFPLLTGEKIVGGSLIGG------  164 (220)
Q Consensus        97 ~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~~------  164 (220)
                      +   +.+++.++  ++|++|||+|+. .++.++++++++|+++.+|....... .....++.++.++.++....      
T Consensus        80 ~~~~~~v~~~t~~~g~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (183)
T d1pqwa_          80 VDFADEILELTDGYGVDVVLNSLAGE-AIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQP  158 (183)
T ss_dssp             STHHHHHHHHTTTCCEEEEEECCCTH-HHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHHHCH
T ss_pred             cCHHHHHHHHhCCCCEEEEEecccch-HHHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceeccCH
Confidence            5   45555554  899999999986 68999999999999999987653322 22233456888888875421      


Q ss_pred             ---HHHHHHHHHHHHhCCcce
Q 027668          165 ---LKETQEMIDFAAKHNIRA  182 (220)
Q Consensus       165 ---~~~~~~~~~~~~~~~~~~  182 (220)
                         .+.++++.+++++|+++|
T Consensus       159 ~~~~~~~~~v~~~i~~G~i~p  179 (183)
T d1pqwa_         159 ARYRQLLQHILQHVADGKLEV  179 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHHHHHHCCCCce
Confidence               355788888999999986

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.95  E-value=5.5e-27  Score=166.93  Aligned_cols=163  Identities=17%  Similarity=0.210  Sum_probs=128.8

Q ss_pred             CcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecC
Q 027668           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        16 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~   94 (220)
                      ++++||+++|++.|+|+++.+...++||++|+|+|+|++|++++|+++.+|+ +|+++++++++++ +++++|+++++++
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~-~ak~lGa~~~i~~   80 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFA-RAKEFGATECINP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHH-HHHHHTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHH-HHHHhCCcEEEeC
Confidence            5788999999999999999877779999999999999999999999999998 6666666666654 4589999999877


Q ss_pred             CCH-----HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC--cccCccccccCCcEEEEeeccC--
Q 027668           95 RDQ-----DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP--LELPAFPLLTGEKIVGGSLIGG--  164 (220)
Q Consensus        95 ~~~-----~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~~--  164 (220)
                      .+.     ..+++..+ ++|++||++|....++.+...++++|.++.++.....  ...+....+.++.++.|+..++  
T Consensus        81 ~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~  160 (176)
T d2fzwa2          81 QDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWK  160 (176)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred             CchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCc
Confidence            542     23333343 8999999999987788899999999888877654432  2233333456789999997654  


Q ss_pred             -HHHHHHHHHHHHhCC
Q 027668          165 -LKETQEMIDFAAKHN  179 (220)
Q Consensus       165 -~~~~~~~~~~~~~~~  179 (220)
                       .+++.++++++++|+
T Consensus       161 ~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         161 SVESVPKLVSEYMSKK  176 (176)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCC
Confidence             577888999998874

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.95  E-value=1.1e-26  Score=164.80  Aligned_cols=160  Identities=20%  Similarity=0.315  Sum_probs=130.0

Q ss_pred             CcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecC
Q 027668           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        16 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~   94 (220)
                      +++.||+++|++.|+|+++.+...+++|++|+|+|+|++|++++|+++.+|+ +|++++.++++++.+ +++|+++++|+
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~A-k~~GA~~~in~   81 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKA-MAVGATECISP   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHHTCSEEECG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHH-HhcCCcEEECc
Confidence            5789999999999999998777779999999999999999999999999997 899999999988766 89999999987


Q ss_pred             CCH----HHHHHhc--CCccEEEEcCCCcccHHHHHhccccC-CEEEEecCCCCCcc--cCccccccCCcEEEEeeccC-
Q 027668           95 RDQ----DEMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQ-GKLVLLGAPEKPLE--LPAFPLLTGEKIVGGSLIGG-  164 (220)
Q Consensus        95 ~~~----~~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~-g~iv~~g~~~~~~~--~~~~~~~~~~~~i~~~~~~~-  164 (220)
                      .+.    ..+.+.+  +|+|++||++|....+..++..+.++ |+++.+|.+.....  +++.. +.++.++.|+..++ 
T Consensus        82 ~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~-~~~~~~i~Gs~~G~~  160 (176)
T d1d1ta2          82 KDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPML-LFTGRTWKGCVFGGL  160 (176)
T ss_dssp             GGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHH-HHTTCEEEECSGGGC
T ss_pred             cccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHH-HhCCCEEEEEEEeCC
Confidence            653    2233333  38999999999987788888877655 99999998765543  33333 44688999987643 


Q ss_pred             --HHHHHHHHHHHHh
Q 027668          165 --LKETQEMIDFAAK  177 (220)
Q Consensus       165 --~~~~~~~~~~~~~  177 (220)
                        +++++++++++.+
T Consensus       161 ~~~~dip~li~~~~~  175 (176)
T d1d1ta2         161 KSRDDVPKLVTEFLA  175 (176)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHhC
Confidence              5778888777654

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.94  E-value=1.2e-26  Score=165.93  Aligned_cols=156  Identities=21%  Similarity=0.224  Sum_probs=127.6

Q ss_pred             cccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHH-
Q 027668           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD-   98 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~-   98 (220)
                      +++.++++|||++|.+...++||++|||+|+ |.+|++++|+++..|++|+++++++++.+.+ +++|+++++++.+.+ 
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~-~~~Ga~~vi~~~~~~~   86 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFDAAFNYKTVNS   86 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTSCSC
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHH-HhhhhhhhcccccccH
Confidence            4678899999999998988999999999997 8999999999999999999999998877665 889999999887653 


Q ss_pred             --HHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-------CcccCccccccCCcEEEEeeccC---
Q 027668           99 --EMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-------PLELPAFPLLTGEKIVGGSLIGG---  164 (220)
Q Consensus        99 --~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-------~~~~~~~~~~~~~~~i~~~~~~~---  164 (220)
                        .+.+.++  ++|+||||+|.+ .++.++++++++|+++.+|....       ...++...++.+++++.|+....   
T Consensus        87 ~~~~~~~~~~~Gvd~v~D~vG~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~~~  165 (182)
T d1v3va2          87 LEEALKKASPDGYDCYFDNVGGE-FLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQG  165 (182)
T ss_dssp             HHHHHHHHCTTCEEEEEESSCHH-HHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGCCH
T ss_pred             HHHHHHHhhcCCCceeEEecCch-hhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEeccCh
Confidence              3334433  899999999976 79999999999999999996432       12344556788999999986643   


Q ss_pred             ---HHHHHHHHHHHHhC
Q 027668          165 ---LKETQEMIDFAAKH  178 (220)
Q Consensus       165 ---~~~~~~~~~~~~~~  178 (220)
                         .+.++++.+++++|
T Consensus       166 ~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         166 DVREKALRDLMKWVLEG  182 (182)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhCc
Confidence               23367777777765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.94  E-value=3.3e-26  Score=162.73  Aligned_cols=163  Identities=23%  Similarity=0.299  Sum_probs=131.9

Q ss_pred             CcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecC
Q 027668           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        16 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~   94 (220)
                      ++++||+++|++.|+|+++.+...++||++|+|+|+|++|+++++.++..|+ +|+++++++++++.+ +++|+++++|+
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a-~~~GAd~~in~   80 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKA-KVFGATDFVNP   80 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTCCEEECG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHH-HHcCCcEEEcC
Confidence            5788999999999999999777779999999999999999999999999998 788888888777665 89999999987


Q ss_pred             CCH----HHHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEE-EEecCCCCCcccCccccccCCcEEEEeeccC---
Q 027668           95 RDQ----DEMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKL-VLLGAPEKPLELPAFPLLTGEKIVGGSLIGG---  164 (220)
Q Consensus        95 ~~~----~~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~i-v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~---  164 (220)
                      .+.    +...+.+  +++|++||++|....+..++.+++++|.+ +..|.......++....+.++.++.|+..++   
T Consensus        81 ~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~  160 (175)
T d1cdoa2          81 NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKG  160 (175)
T ss_dssp             GGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGGGCCH
T ss_pred             CCcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEeCCcH
Confidence            543    2333333  38999999999987788888888777544 4555555455556666677899999997654   


Q ss_pred             HHHHHHHHHHHHhCC
Q 027668          165 LKETQEMIDFAAKHN  179 (220)
Q Consensus       165 ~~~~~~~~~~~~~~~  179 (220)
                      +++++++++++++|+
T Consensus       161 ~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         161 KDGVPKMVKAYLDKK  175 (175)
T ss_dssp             HHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHcCC
Confidence            678999999999874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.94  E-value=3.6e-26  Score=162.62  Aligned_cols=163  Identities=18%  Similarity=0.258  Sum_probs=128.7

Q ss_pred             CcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecC
Q 027668           16 PLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVS   94 (220)
Q Consensus        16 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~   94 (220)
                      ++++||+++|++.|+|+++.+...++||++|+|+|+|++|++++++++..|+ +|++++.++++++.+ +++|++.++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a-~~~Ga~~~i~~   80 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEVGATECVNP   80 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHTTCSEEECG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHH-HHhCCeeEEec
Confidence            5788999999999999999888889999999999999999999999999997 888888888776555 89999988876


Q ss_pred             CCH----HHHHHh-c-CCccEEEEcCCCcccHHHHHhccccCCEEEEecC-CCCCc-ccCccccccCCcEEEEeeccC--
Q 027668           95 RDQ----DEMQAA-M-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGA-PEKPL-ELPAFPLLTGEKIVGGSLIGG--  164 (220)
Q Consensus        95 ~~~----~~~~~~-~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~-~~~~~-~~~~~~~~~~~~~i~~~~~~~--  164 (220)
                      .+.    +...+. . +|+|++||++|....++.++..++++|..+.++. ..... .+....++.+++++.|+..++  
T Consensus        81 ~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~  160 (176)
T d2jhfa2          81 QDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFK  160 (176)
T ss_dssp             GGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCC
T ss_pred             CCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCC
Confidence            432    222222 3 3999999999999888889999988755554444 33332 223334567999999997654  


Q ss_pred             -HHHHHHHHHHHHhCC
Q 027668          165 -LKETQEMIDFAAKHN  179 (220)
Q Consensus       165 -~~~~~~~~~~~~~~~  179 (220)
                       +++++++++++++|+
T Consensus       161 ~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         161 SKDSVPKLVADFMAKK  176 (176)
T ss_dssp             HHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHCcC
Confidence             678999999998874

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.94  E-value=3e-27  Score=169.94  Aligned_cols=164  Identities=14%  Similarity=0.221  Sum_probs=133.9

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEE-cC-chHHHHHHHHHHHCCCeEEEEeCCcccHH---HHHHHcCCc
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV-GL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS---EAVERLGAD   89 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~-G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~---~~~~~~g~~   89 (220)
                      +|+++||++++.++|||++|.....++||+.++|+ |+ |++|++++|+||++|++|++++++.++.+   ...+++|++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad   80 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT   80 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc
Confidence            58899999999999999999988889999998887 55 99999999999999999999987765443   234789999


Q ss_pred             EEecCCCH------HHHHHhc----CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCCcEEE
Q 027668           90 SFLVSRDQ------DEMQAAM----GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGEKIVG  158 (220)
Q Consensus        90 ~v~~~~~~------~~~~~~~----~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~~~i~  158 (220)
                      +++++++.      +.+++.+    +++|++|||+|.+ .+...+++|+++|+++.+|...+ ..+++...++.|++++.
T Consensus        81 ~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~  159 (189)
T d1gu7a2          81 QVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGK-SSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSA  159 (189)
T ss_dssp             EEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHH-HHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEE
T ss_pred             EEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcc-hhhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEE
Confidence            99977542      2233332    3799999999987 58899999999999999997654 46788888889999999


Q ss_pred             EeeccC---------HHHHHHHHHHHHhCC
Q 027668          159 GSLIGG---------LKETQEMIDFAAKHN  179 (220)
Q Consensus       159 ~~~~~~---------~~~~~~~~~~~~~~~  179 (220)
                      |++...         .+.++++++++++|+
T Consensus       160 G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         160 GFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             ECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            986532         245777888888774

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=9.9e-27  Score=166.05  Aligned_cols=162  Identities=22%  Similarity=0.263  Sum_probs=127.1

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEec
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV   93 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~   93 (220)
                      +|+++||++++.++|||++|.+...++||++|||+|+ |++|++++|+++..|++|+++++++++++.+ +++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~-~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA-LKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHH-HhcCCeEEEE
Confidence            5789999999999999999998888999999999986 8899999999999999999999999988666 7899999999


Q ss_pred             CCCH---HHHHHhcC--CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC-cccCccccccC-CcEEEEee----c
Q 027668           94 SRDQ---DEMQAAMG--TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP-LELPAFPLLTG-EKIVGGSL----I  162 (220)
Q Consensus        94 ~~~~---~~~~~~~~--~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~-~~~~~~~~~~~-~~~i~~~~----~  162 (220)
                      ++++   +.+++.++  ++|++||++|.. .+..++.+++++|+++.++..... ..++...+..+ ...+....    .
T Consensus        80 ~~~~d~~~~v~~~t~g~g~d~v~d~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  158 (179)
T d1qora2          80 YREEDLVERLKEITGGKKVRVVYDSVGRD-TWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYI  158 (179)
T ss_dssp             TTTSCHHHHHHHHTTTCCEEEEEECSCGG-GHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHC
T ss_pred             CCCCCHHHHHHHHhCCCCeEEEEeCccHH-HHHHHHHHHhcCCeeeecccccCCccccchhhhhccceEEEEeeEEeeec
Confidence            8775   45566665  799999999976 699999999999999999876643 34444333333 33332211    1


Q ss_pred             cCHHH----HHHHHHHHHhC
Q 027668          163 GGLKE----TQEMIDFAAKH  178 (220)
Q Consensus       163 ~~~~~----~~~~~~~~~~~  178 (220)
                      ..+++    ++++++++++|
T Consensus       159 ~~~~~~~~~~~~l~~lv~~G  178 (179)
T d1qora2         159 TTREELTEASNELFSLIASG  178 (179)
T ss_dssp             CSHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHCc
Confidence            22222    44566677665

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5.7e-26  Score=160.71  Aligned_cols=156  Identities=20%  Similarity=0.217  Sum_probs=127.4

Q ss_pred             CCcccccccchhhhhhhhhhH---hccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE
Q 027668           15 APLDATAPLLCAGITVYSPLR---FYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS   90 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~   90 (220)
                      +|+.+||++++++.|||++++   +.+..+++++|||+|+ |++|++++|++|.+|++|+++++++++.+.+ +++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~-~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL-KSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH-Hhhcccc
Confidence            578899999999999997764   4443345569999986 9999999999999999999999999887666 7999999


Q ss_pred             EecCCCHHHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCCcEEEEeec--cCHH
Q 027668           91 FLVSRDQDEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGEKIVGGSLI--GGLK  166 (220)
Q Consensus        91 v~~~~~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~~~i~~~~~--~~~~  166 (220)
                      ++++++.+..+.+.+ .+|.++|++|+. .+...+++++++|+++.+|...+ ..+++..+++.+++++.|+..  .+++
T Consensus        80 vi~~~~~~~~~~l~~~~~~~vvD~Vgg~-~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~  158 (177)
T d1o89a2          80 VLPRDEFAESRPLEKQVWAGAIDTVGDK-VLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPE  158 (177)
T ss_dssp             EEEGGGSSSCCSSCCCCEEEEEESSCHH-HHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECCSSSCCHH
T ss_pred             ccccccHHHHHHHHhhcCCeeEEEcchH-HHHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEecccCCHH
Confidence            999876554444443 689999999987 69999999999999999998765 467788888899999999644  4555


Q ss_pred             HHHHHH
Q 027668          167 ETQEMI  172 (220)
Q Consensus       167 ~~~~~~  172 (220)
                      +..+++
T Consensus       159 ~~~~~~  164 (177)
T d1o89a2         159 RRAQAW  164 (177)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544444

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.1e-25  Score=159.03  Aligned_cols=163  Identities=15%  Similarity=0.130  Sum_probs=123.7

Q ss_pred             CCcccccccchhhhhhhhhhHhccCCCCC--CEEEEEcC-chHHHHHHHHHHHCCCe-EEEEeCCcccHHHHHHHcCCcE
Q 027668           15 APLDATAPLLCAGITVYSPLRFYGLDKPG--MHVGVVGL-GGLGHVAVKFAKAMGVK-VTVISTSPSKKSEAVERLGADS   90 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~vlI~G~-g~~G~~~~~~~~~~g~~-v~~~~~~~~~~~~~~~~~g~~~   90 (220)
                      +|+...| +++++.|||+++.....+++|  ++|||+|+ |++|++++|+||.+|++ |++++.++++...+.+++|++.
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            5566654 778899999999998888987  88999996 99999999999999995 6666778788777878999999


Q ss_pred             EecCCCH---HHHHHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCC---cccC-------ccccccCCcE
Q 027668           91 FLVSRDQ---DEMQAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKP---LELP-------AFPLLTGEKI  156 (220)
Q Consensus        91 v~~~~~~---~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~---~~~~-------~~~~~~~~~~  156 (220)
                      ++|+.++   +.+++.++ |+|+|||++|.. .+...+++++++|+++.+|...+.   .+.+       ...+..++++
T Consensus        81 vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg~-~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~  159 (187)
T d1vj1a2          81 AVNYKTGNVAEQLREACPGGVDVYFDNVGGD-ISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNIT  159 (187)
T ss_dssp             EEETTSSCHHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCE
T ss_pred             EeeccchhHHHHHHHHhccCceEEEecCCch-hHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceE
Confidence            9999874   45555554 899999999986 699999999999999999975421   1111       1123568889


Q ss_pred             EEEeeccC-----HHHHHHHHHHHHhCC
Q 027668          157 VGGSLIGG-----LKETQEMIDFAAKHN  179 (220)
Q Consensus       157 i~~~~~~~-----~~~~~~~~~~~~~~~  179 (220)
                      +.++....     .+.++++.+++.+|+
T Consensus       160 ~~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         160 RERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             EEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             EEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            98875532     244677777887764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=3e-24  Score=154.41  Aligned_cols=160  Identities=20%  Similarity=0.148  Sum_probs=129.1

Q ss_pred             ccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCC
Q 027668           18 DATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRD   96 (220)
Q Consensus        18 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~   96 (220)
                      ++.++++..+.|||+++++. .+++|++|||+|+|++|++++++++..|+ +|++++.++++++.+ +++|+++++++.+
T Consensus         2 ~d~~~l~d~~~ta~~a~~~a-~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a-~~~Ga~~~~~~~~   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGAVTA-GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQGFEIADLSLD   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHHHHT-TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTTCEEEETTSS
T ss_pred             chHHhcccHHHHHHHHHHHh-CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhh-hhccccEEEeCCC
Confidence            45678899999999999765 59999999999999999999999999999 888888888877666 8999999998776


Q ss_pred             H---HHHHHhcC--CccEEEEcCCCc---------------ccHHHHHhccccCCEEEEecCCCCC-------------c
Q 027668           97 Q---DEMQAAMG--TMDGIIDTVSAV---------------HPLMPLIGLLKSQGKLVLLGAPEKP-------------L  143 (220)
Q Consensus        97 ~---~~~~~~~~--~~d~vid~~g~~---------------~~~~~~~~~l~~~g~iv~~g~~~~~-------------~  143 (220)
                      .   +.+.++++  ++|++|||+|.+               .+++.++++++++|+++.+|.....             .
T Consensus        80 ~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~  159 (195)
T d1kola2          80 TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSL  159 (195)
T ss_dssp             SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCC
T ss_pred             cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCce
Confidence            4   34555654  899999999943               3688999999999999999975432             2


Q ss_pred             ccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCC
Q 027668          144 ELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHN  179 (220)
Q Consensus       144 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  179 (220)
                      +++...++.+++++.+........++++++++.+++
T Consensus       160 ~~~~~~~~~k~~~i~~g~~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         160 SIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             CCCHHHHHHTTCEEEESSCCHHHHHHHHHHHHHTTS
T ss_pred             eeeHHHHHhhcceeccCCCchHHHHHHHHHHHHcCC
Confidence            233334567889987766555666888999888764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=2.1e-24  Score=151.17  Aligned_cols=156  Identities=19%  Similarity=0.268  Sum_probs=119.8

Q ss_pred             chhhhhhhhh---hHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCH--
Q 027668           24 LCAGITVYSP---LRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQ--   97 (220)
Q Consensus        24 ~~~~~ta~~~---l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~--   97 (220)
                      .+++.|||.+   |.+.+..+++++|||+|+ |++|++++|+||.+|++|+.+++++++.+.+ +++|++.++++++.  
T Consensus         2 G~aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~-~~lGad~vi~~~~~~~   80 (167)
T d1tt7a2           2 GTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL-KQLGASEVISREDVYD   80 (167)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH-HHHTCSEEEEHHHHCS
T ss_pred             CChHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH-HhhcccceEeccchhc
Confidence            3456677754   455555567889999996 9999999999999999999999999887777 78999999876432  


Q ss_pred             HHHHHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC-CcccCccccccCCcEEEEeec--cCHHHHHHHHH
Q 027668           98 DEMQAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK-PLELPAFPLLTGEKIVGGSLI--GGLKETQEMID  173 (220)
Q Consensus        98 ~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~-~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~  173 (220)
                      +...... +++|+|||++|+. .+..++++++++|+++.+|...+ ..+++..+++.+++++.|...  .+.+....+.+
T Consensus        81 ~~~~~~~~~gvd~vid~vgg~-~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~~~~~~~~~~~~~  159 (167)
T d1tt7a2          81 GTLKALSKQQWQGAVDPVGGK-QLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWE  159 (167)
T ss_dssp             SCCCSSCCCCEEEEEESCCTH-HHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHH
T ss_pred             hhhhcccCCCceEEEecCcHH-HHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEecCCCCHHHHHHHHH
Confidence            1111111 2899999999987 69999999999999999998875 467888889999999999643  33455555555


Q ss_pred             HHHhCCcce
Q 027668          174 FAAKHNIRA  182 (220)
Q Consensus       174 ~~~~~~~~~  182 (220)
                      .+. +.++|
T Consensus       160 ~l~-~~L~P  167 (167)
T d1tt7a2         160 RMS-SDLKP  167 (167)
T ss_dssp             HTT-TTSCC
T ss_pred             HHH-hcCCC
Confidence            443 34443

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=8.5e-16  Score=91.91  Aligned_cols=73  Identities=25%  Similarity=0.288  Sum_probs=63.6

Q ss_pred             CCcccccccchhhhhhhhhhH---hccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC
Q 027668           15 APLDATAPLLCAGITVYSPLR---FYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA   88 (220)
Q Consensus        15 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~   88 (220)
                      +|+++|+.+++++.|||.+++   +....+++++|||+|+ |++|.+++|+++.+|++|+++++++++.+.+ +++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~-~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL-KSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH-HHCCC
Confidence            578999999999999998765   3445689999999986 9999999999999999999999999887666 77774

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.97  E-value=3.4e-09  Score=71.95  Aligned_cols=100  Identities=19%  Similarity=0.236  Sum_probs=79.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      +..+|+|+|+|..|+.+++.|+.+|++|.+.+.+.++++++...++........+.+.+.+....+|+||.++--+.   
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~a  110 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRA  110 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCccc
Confidence            34789999999999999999999999999999999999888666664323334455566666668999999875432   


Q ss_pred             ---cHHHHHhccccCCEEEEecCCCC
Q 027668          119 ---PLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       119 ---~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                         .-+..++.|++|+.+|.+....+
T Consensus       111 P~lIt~~mv~~Mk~GSVIVDvaidqG  136 (168)
T d1pjca1         111 PILVPASLVEQMRTGSVIVDVAVDQG  136 (168)
T ss_dssp             CCCBCHHHHTTSCTTCEEEETTCTTC
T ss_pred             CeeecHHHHhhcCCCcEEEEeecCCC
Confidence               23678899999999999987653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.86  E-value=2.4e-08  Score=68.69  Aligned_cols=99  Identities=21%  Similarity=0.247  Sum_probs=73.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecC-----------------------CCHH
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS-----------------------RDQD   98 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~-----------------------~~~~   98 (220)
                      |..+|+|+|+|..|+.+++.|+.+|+.|.+.+.+.++++++ ++++...+...                       ...+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l-~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQV-ESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHH-HHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHH-HHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            34689999999999999999999999999999999998888 56765433110                       0012


Q ss_pred             HHHHhcCCccEEEEcCCCcc------cHHHHHhccccCCEEEEecCCCC
Q 027668           99 EMQAAMGTMDGIIDTVSAVH------PLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus        99 ~~~~~~~~~d~vid~~g~~~------~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      .+.+.....|+||.++--+.      .-+..++.|++|+.+|.+....+
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqG  155 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAG  155 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGT
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCC
Confidence            33333458999999874431      23678899999999999876543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.66  E-value=2e-07  Score=65.48  Aligned_cols=82  Identities=13%  Similarity=0.119  Sum_probs=65.9

Q ss_pred             HhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC----C-cEEecCCCHHHHHHhcCCcc
Q 027668           35 RFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG----A-DSFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        35 ~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g----~-~~v~~~~~~~~~~~~~~~~d  108 (220)
                      .....--+|++++|.|+ |++|..+++.+...|++|++++++.++.+++.+++.    . ....+..+.+.+.+..+++|
T Consensus        15 ~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iD   94 (191)
T d1luaa1          15 KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAH   94 (191)
T ss_dssp             HHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCS
T ss_pred             HHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcC
Confidence            33343458999999997 999999999999999999999999988777655443    2 34456677778888888999


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|+++|.
T Consensus        95 ilin~Ag~  102 (191)
T d1luaa1          95 FVFTAGAI  102 (191)
T ss_dssp             EEEECCCT
T ss_pred             eeeecCcc
Confidence            99999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.61  E-value=1.3e-07  Score=64.24  Aligned_cols=74  Identities=26%  Similarity=0.334  Sum_probs=59.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      -.+.+|||+|+|.+|..+++.+...|+ +++++.++.++.+.+++++|... ...   +.+.+....+|+||.|++.+.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~-~~~---~~~~~~l~~~Divi~atss~~   96 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEA-VRF---DELVDHLARSDVVVSATAAPH   96 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEE-CCG---GGHHHHHHTCSEEEECCSSSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhccc-ccc---hhHHHHhccCCEEEEecCCCC
Confidence            577899999999999999999999999 79999999888888888998653 333   233344458999999998764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4e-07  Score=66.40  Aligned_cols=77  Identities=21%  Similarity=0.306  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC--cEEecCCCHHHHHHhc---CCccEEEEcC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--DSFLVSRDQDEMQAAM---GTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~--~~v~~~~~~~~~~~~~---~~~d~vid~~  114 (220)
                      -.|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++++.  ....|-.+.+.+++..   +++|++|+++
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnnA   84 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEecc
Confidence            36899999997 8999999999999999999999999998888888764  2344666666666554   3899999998


Q ss_pred             CCc
Q 027668          115 SAV  117 (220)
Q Consensus       115 g~~  117 (220)
                      |..
T Consensus        85 g~~   87 (244)
T d1pr9a_          85 AVA   87 (244)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            874

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=2e-07  Score=67.96  Aligned_cols=98  Identities=21%  Similarity=0.352  Sum_probs=73.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc---EEecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++++..   ...|-.+.+.++++       .+++|++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDIL   82 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCccee
Confidence            5789999997 89999999999999999999999999888888887743   23455555443322       2489999


Q ss_pred             EEcCCCcc-------------------------cHHHHHhcc--ccCCEEEEecCC
Q 027668          111 IDTVSAVH-------------------------PLMPLIGLL--KSQGKLVLLGAP  139 (220)
Q Consensus       111 id~~g~~~-------------------------~~~~~~~~l--~~~g~iv~~g~~  139 (220)
                      |+++|...                         ..+.+++.|  +++|+|+.+++.
T Consensus        83 VnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~  138 (243)
T d1q7ba_          83 VNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSV  138 (243)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             hhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecch
Confidence            99987742                         234455665  347999999864

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.55  E-value=3.9e-07  Score=66.77  Aligned_cols=99  Identities=18%  Similarity=0.280  Sum_probs=74.2

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe---cCCCHHHHH-------HhcCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL---VSRDQDEMQ-------AAMGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~---~~~~~~~~~-------~~~~~~d~v  110 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++++.....   |-.+.+.++       +..+++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDil   84 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNVL   84 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCeE
Confidence            5789999997 89999999999999999999999999988888888864433   333433332       223589999


Q ss_pred             EEcCCCcc-------------------------cHHHHHhccc-cCCEEEEecCCC
Q 027668          111 IDTVSAVH-------------------------PLMPLIGLLK-SQGKLVLLGAPE  140 (220)
Q Consensus       111 id~~g~~~-------------------------~~~~~~~~l~-~~g~iv~~g~~~  140 (220)
                      ++++|...                         ..+.++..|+ .+|+|+.+++..
T Consensus        85 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~  140 (253)
T d1hxha_          85 VNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVS  140 (253)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred             EecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchh
Confidence            99998642                         1244555664 579999998754

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=98.52  E-value=3.6e-07  Score=66.99  Aligned_cols=99  Identities=22%  Similarity=0.372  Sum_probs=73.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++++...   ..|-.+.+.++++       .+++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   83 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDGL   83 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccEE
Confidence            5799999997 899999999999999999999999999888888887432   2344555444332       2589999


Q ss_pred             EEcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCCC
Q 027668          111 IDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAPE  140 (220)
Q Consensus       111 id~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~~  140 (220)
                      |+++|...                         ..+.+++.++  ++|+|+.+++..
T Consensus        84 VnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~  140 (254)
T d1hdca_          84 VNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAA  140 (254)
T ss_dssp             EECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             EecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccch
Confidence            99988742                         1233444433  479999998754

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.47  E-value=5.2e-07  Score=65.70  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=74.1

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccE
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~  109 (220)
                      -+|+++||.|+ +++|+++++.+...|++|+++++++++.+.+.++++....   .|-.+++.++++       .+++|+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~idi   83 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV   83 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCeE
Confidence            36799999997 8999999999999999999999999998888888874322   344555444322       248999


Q ss_pred             EEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCCCC
Q 027668          110 IIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAPEK  141 (220)
Q Consensus       110 vid~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~~~  141 (220)
                      +++++|...                         ..+.++..++  .+|+|+.+++...
T Consensus        84 linnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~  142 (244)
T d1nffa_          84 LVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEG  142 (244)
T ss_dssp             EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             EEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccc
Confidence            999998742                         1223444443  4689999987643

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=9.3e-07  Score=64.60  Aligned_cols=98  Identities=18%  Similarity=0.263  Sum_probs=72.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE--EecCCCHHHHHHh-------cCCccEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS--FLVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~-------~~~~d~vi  111 (220)
                      .|+++||.|+ +++|.++++.+...|++|++.++++++.+++.++++...  ..|-.+.+.++++       .+++|++|
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDilV   84 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVV   84 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            5899999997 899999999999999999999999998888877776422  2345555444332       24899999


Q ss_pred             EcCCCcc--------------------------cHHHHHhccc-cCCEEEEecCC
Q 027668          112 DTVSAVH--------------------------PLMPLIGLLK-SQGKLVLLGAP  139 (220)
Q Consensus       112 d~~g~~~--------------------------~~~~~~~~l~-~~g~iv~~g~~  139 (220)
                      +++|...                          ..+.++..|+ .+|+++.+++.
T Consensus        85 nnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~  139 (250)
T d1ydea1          85 NNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSL  139 (250)
T ss_dssp             ECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCH
T ss_pred             ecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccc
Confidence            9988421                          1234455554 35899998764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.43  E-value=8.1e-07  Score=60.83  Aligned_cols=77  Identities=17%  Similarity=0.142  Sum_probs=60.3

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccE
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~  109 (220)
                      ..+|+... +.++++|+|+|+|+.+.+++..++..|+ ++.++.|+.++.+.+.+.++...+-...        ...+|+
T Consensus         6 ~~~l~~~~-~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--------~~~~Dl   76 (167)
T d1npya1           6 VKLIEKYH-LNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--------NQQADI   76 (167)
T ss_dssp             HHHHHHTT-CCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--------TCCCSE
T ss_pred             HHHHHHcC-CCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--------ccchhh
Confidence            34565555 5678999999999999999999999998 8999999999888887888765442111        136899


Q ss_pred             EEEcCCC
Q 027668          110 IIDTVSA  116 (220)
Q Consensus       110 vid~~g~  116 (220)
                      +|+|++-
T Consensus        77 iINaTpi   83 (167)
T d1npya1          77 LVNVTSI   83 (167)
T ss_dssp             EEECSST
T ss_pred             heecccc
Confidence            9999763

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.43  E-value=7.3e-07  Score=65.43  Aligned_cols=76  Identities=16%  Similarity=0.294  Sum_probs=61.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +|+++||.|+ +++|+++++.+...|++|++++++.++.+++.+++|....   .|-.+.+.++++       .+++|++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDil   83 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDIL   83 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            5789999997 8999999999999999999999999998888889886432   355555444432       2589999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      ++++|..
T Consensus        84 VnnAg~~   90 (256)
T d1k2wa_          84 VNNAALF   90 (256)
T ss_dssp             EECCCCC
T ss_pred             Eeecccc
Confidence            9999864

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=98.42  E-value=1.4e-06  Score=63.59  Aligned_cols=99  Identities=19%  Similarity=0.255  Sum_probs=71.6

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHh-------cCCccEEE
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------MGTMDGII  111 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~vi  111 (220)
                      -.|+++||.|+ +++|.++++.+...|++|++.+++++..+ ..++.+...+ .|-.+.+.++++       .+++|++|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            36899999997 89999999999999999999999887654 4467776433 355555433322       25899999


Q ss_pred             EcCCCcc-------------------------cHHHHHhcccc--CCEEEEecCCC
Q 027668          112 DTVSAVH-------------------------PLMPLIGLLKS--QGKLVLLGAPE  140 (220)
Q Consensus       112 d~~g~~~-------------------------~~~~~~~~l~~--~g~iv~~g~~~  140 (220)
                      +++|...                         ..+.++..|++  +|+|+.++...
T Consensus        82 nnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~  137 (248)
T d2d1ya1          82 NNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQ  137 (248)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred             EeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccc
Confidence            9988641                         22445556643  68999988654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=2.8e-06  Score=61.98  Aligned_cols=98  Identities=20%  Similarity=0.290  Sum_probs=70.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH----HcCCcE---EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE----RLGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.++..+    ++|...   ..|-.+++.++++       .++
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   83 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5789999997 899999999999999999999999887655443    445432   2355555444332       258


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCC
Q 027668          107 MDGIIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~vid~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~  139 (220)
                      +|++|+++|...                         ..+.++..|+  .+|+++.+++.
T Consensus        84 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~  143 (251)
T d1vl8a_          84 LDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL  143 (251)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence            999999998742                         2344566664  46899998764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=2e-06  Score=62.99  Aligned_cols=99  Identities=14%  Similarity=0.191  Sum_probs=70.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-----Cc---EEecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-----AD---SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-----~~---~v~~~~~~~~~~~~-------~~  105 (220)
                      .|+++||.|+ +++|.++++.+...|++|++++++.++.+++.+++.     ..   ...|-.+.+.++++       .+
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            5899999997 899999999999999999999999988777655542     12   12355555444332       25


Q ss_pred             CccEEEEcCCCcc-----------------cHHHHHhcccc-----CCEEEEecCCC
Q 027668          106 TMDGIIDTVSAVH-----------------PLMPLIGLLKS-----QGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~vid~~g~~~-----------------~~~~~~~~l~~-----~g~iv~~g~~~  140 (220)
                      ++|++++++|...                 ..+.++..|++     +|+|+.+++..
T Consensus        82 ~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~  138 (254)
T d2gdza1          82 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  138 (254)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence            8999999998753                 12334444432     48899987654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.39  E-value=4e-07  Score=64.93  Aligned_cols=102  Identities=23%  Similarity=0.221  Sum_probs=70.2

Q ss_pred             hhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHH---cCCc-EEecCCCHHHHHHhcCC
Q 027668           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVER---LGAD-SFLVSRDQDEMQAAMGT  106 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~~~~  106 (220)
                      +++... ++||++||-+|+|+ |..++.+++..|.  +|+.++.+++..+.+.+.   .+.+ ..+...+........+.
T Consensus        67 ~l~~l~-l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          67 FMEWVG-LDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHTT-CCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHhhh-ccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            455554 89999999999986 8888889998764  899999998866655443   2332 12111221111111236


Q ss_pred             ccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668          107 MDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       107 ~d~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      ||.|+.+.+.....+..++.|++||+++..
T Consensus       145 fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         145 YDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             EEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             hhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            999998877666567788999999999874

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=98.37  E-value=2.8e-06  Score=62.63  Aligned_cols=75  Identities=16%  Similarity=0.290  Sum_probs=58.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC---c--EEecCCCHHHHHHh-------cCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---D--SFLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~---~--~v~~~~~~~~~~~~-------~~~~d  108 (220)
                      +|+++||.|+ +++|+++++.+...|++|+++++++++.+++.++++.   .  ...|-.+.+.++++       .+.+|
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   84 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD   84 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCcc
Confidence            6799999997 8999999999999999999999999988888777753   1  12355555444332       24899


Q ss_pred             EEEEcCCC
Q 027668          109 GIIDTVSA  116 (220)
Q Consensus       109 ~vid~~g~  116 (220)
                      ++|+++|.
T Consensus        85 ~lVnnAG~   92 (268)
T d2bgka1          85 IMFGNVGV   92 (268)
T ss_dssp             EEEECCCC
T ss_pred             eecccccc
Confidence            99999875

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=98.37  E-value=1.8e-06  Score=63.43  Aligned_cols=98  Identities=13%  Similarity=0.219  Sum_probs=69.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      .|+++||.|+ +++|+++++.+...|++|+++++++++.+++.+++   |...   ..|-.+.+.++++       .+++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGKI   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5899999997 89999999999999999999999988777665544   4322   2344454433322       2589


Q ss_pred             cEEEEcCCCcc--------------------------cHHHHHhcc--ccCCEEEEecCC
Q 027668          108 DGIIDTVSAVH--------------------------PLMPLIGLL--KSQGKLVLLGAP  139 (220)
Q Consensus       108 d~vid~~g~~~--------------------------~~~~~~~~l--~~~g~iv~~g~~  139 (220)
                      |++|+++|...                          ..+.++..+  +.+|+++.+++.
T Consensus        84 DilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~  143 (260)
T d1zema1          84 DFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASM  143 (260)
T ss_dssp             CEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             CeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeech
Confidence            99999988531                          123344444  467999999764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=98.36  E-value=1.7e-06  Score=63.26  Aligned_cols=76  Identities=18%  Similarity=0.231  Sum_probs=58.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC--c---EEecCCCHHHHHH-------hcCCcc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--D---SFLVSRDQDEMQA-------AMGTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~--~---~v~~~~~~~~~~~-------~~~~~d  108 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++++.  .   ...|-.+.+.+++       ..+++|
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD   84 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS   84 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCce
Confidence            5789999997 8999999999999999999999999888888777652  1   1234445443332       235899


Q ss_pred             EEEEcCCCc
Q 027668          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~vid~~g~~  117 (220)
                      ++++++|..
T Consensus        85 iLVnnAg~~   93 (251)
T d1zk4a1          85 TLVNNAGIA   93 (251)
T ss_dssp             EEEECCCCC
T ss_pred             EEEeccccc
Confidence            999999874

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=98.36  E-value=1.4e-06  Score=64.51  Aligned_cols=75  Identities=27%  Similarity=0.342  Sum_probs=59.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+++|...   ..|..+.+.++++       .+.+|++
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idil   83 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDTL   83 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCcccc
Confidence            5899999997 899999999999999999999999998888888887532   2344554433322       2589999


Q ss_pred             EEcCCC
Q 027668          111 IDTVSA  116 (220)
Q Consensus       111 id~~g~  116 (220)
                      ++++|.
T Consensus        84 vnnAG~   89 (276)
T d1bdba_          84 IPNAGI   89 (276)
T ss_dssp             ECCCCC
T ss_pred             cccccc
Confidence            999874

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=1.9e-06  Score=62.58  Aligned_cols=76  Identities=24%  Similarity=0.347  Sum_probs=61.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-c-EEecCCCHHHHHHhc---CCccEEEEcCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-D-SFLVSRDQDEMQAAM---GTMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~-~v~~~~~~~~~~~~~---~~~d~vid~~g  115 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++++. . ...|-.+.+.+++..   +++|++|+++|
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnAg   83 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAA   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECCc
Confidence            5899999997 8999999999999999999999999988888777763 2 334566666666554   48999999988


Q ss_pred             Cc
Q 027668          116 AV  117 (220)
Q Consensus       116 ~~  117 (220)
                      ..
T Consensus        84 ~~   85 (242)
T d1cyda_          84 LV   85 (242)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=98.34  E-value=4e-06  Score=60.76  Aligned_cols=99  Identities=23%  Similarity=0.360  Sum_probs=74.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE---ecCCCHHHHHHh-------cCCccEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF---LVSRDQDEMQAA-------MGTMDGI  110 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v---~~~~~~~~~~~~-------~~~~d~v  110 (220)
                      .|+++||.|+ +++|.++++-+...|++|+++.++.++.++..++++.+..   .|-.+.+.++++       .+++|+.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDiL   83 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHGV   83 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccEe
Confidence            6799999997 8999999999999999999999999998888888886432   244455444332       2589999


Q ss_pred             EEcCCCcc-------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          111 IDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 id~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      |+++|...                         ..+..+..+++++.++..+...
T Consensus        84 innAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a  138 (241)
T d2a4ka1          84 AHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVA  138 (241)
T ss_dssp             EEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCT
T ss_pred             ccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccc
Confidence            99887542                         1244566677788877776543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.33  E-value=1.7e-06  Score=62.92  Aligned_cols=76  Identities=18%  Similarity=0.362  Sum_probs=61.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHh-------cCCccEEEE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAA-------MGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~-------~~~~d~vid  112 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+++++..+ .|-.+++.++++       .+++|++|+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilVn   83 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEEE
Confidence            5789999997 8999999999999999999999999998888888887543 355555444332       248999999


Q ss_pred             cCCCc
Q 027668          113 TVSAV  117 (220)
Q Consensus       113 ~~g~~  117 (220)
                      ++|..
T Consensus        84 nAG~~   88 (242)
T d1ulsa_          84 YAGIT   88 (242)
T ss_dssp             CCCCC
T ss_pred             CCccc
Confidence            98874

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1e-06  Score=60.46  Aligned_cols=81  Identities=20%  Similarity=0.238  Sum_probs=59.9

Q ss_pred             hhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC---cEEecCCCHHHHHHhcCCcc
Q 027668           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---DSFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d  108 (220)
                      .+|+..+-..+|++|||+|+|+.+.+++.-+...|++++++.|+.++.+.+.+.+..   ...+...+.     ....+|
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~-----~~~~~d   81 (170)
T d1nyta1           7 SDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDEL-----EGHEFD   81 (170)
T ss_dssp             HHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGG-----TTCCCS
T ss_pred             HHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccc-----cccccc
Confidence            456665544688999999999999999999999999999999999988887776652   112211110     123799


Q ss_pred             EEEEcCCCc
Q 027668          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~vid~~g~~  117 (220)
                      ++|+|+...
T Consensus        82 liIN~Tp~G   90 (170)
T d1nyta1          82 LIINATSSG   90 (170)
T ss_dssp             EEEECCSCG
T ss_pred             eeecccccC
Confidence            999998654

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.8e-06  Score=62.74  Aligned_cols=102  Identities=14%  Similarity=0.272  Sum_probs=72.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc---EEecCCCHHHHHH-------hcCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD---SFLVSRDQDEMQA-------AMGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~---~v~~~~~~~~~~~-------~~~~  106 (220)
                      -.|+.+||.|+ +++|..++..+...|++|++++++.++.+++.++   .|..   ...|-.+.+.+++       ..+.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            36899999997 8999999999999999999999999887766554   3432   2235555544332       2358


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCCCCC
Q 027668          107 MDGIIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAPEKP  142 (220)
Q Consensus       107 ~d~vid~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~~~~  142 (220)
                      +|++|+++|...                         ..+.++..|+  ++|+++.+++....
T Consensus        85 idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~  147 (244)
T d1yb1a_          85 VSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGH  147 (244)
T ss_dssp             CSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-C
T ss_pred             CceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhc
Confidence            999999998852                         1234455554  35789988876643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.29  E-value=2.5e-06  Score=62.29  Aligned_cols=99  Identities=15%  Similarity=0.210  Sum_probs=69.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHH-------hcCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQA-------AMGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~-------~~~~~  107 (220)
                      .++.+||.|+ +++|.++++.+...|++|+++++++++.+++.+++   |...   ..|-.+.+.+++       ..+++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   88 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV   88 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence            4688899997 89999999999999999999999988776665543   4322   234455544432       23589


Q ss_pred             cEEEEcCCCcc-------------------------cHHHHHhcc--ccCCEEEEecCCC
Q 027668          108 DGIIDTVSAVH-------------------------PLMPLIGLL--KSQGKLVLLGAPE  140 (220)
Q Consensus       108 d~vid~~g~~~-------------------------~~~~~~~~l--~~~g~iv~~g~~~  140 (220)
                      |++|+++|...                         ..+.++..+  +++|+||.+++..
T Consensus        89 Dilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~  148 (251)
T d2c07a1          89 DILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIV  148 (251)
T ss_dssp             CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred             eeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHH
Confidence            99999988742                         123344444  3569999998653

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.28  E-value=4e-06  Score=57.62  Aligned_cols=96  Identities=14%  Similarity=0.161  Sum_probs=69.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEec--CCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV--SRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~--~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      +++|+|+|+|-+|..+++.+...|.+|++++++.++.+.+.++++...+..  ..............|.++.+.......
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~   81 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA   81 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhh
Confidence            589999999999999999999999999999999999988877777543332  222333344445788888888766444


Q ss_pred             HHHHhccccCCEEEEecC
Q 027668          121 MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~  138 (220)
                      .....+.+.+..++....
T Consensus        82 ~~~~~~~~~~~~~~~~~~   99 (182)
T d1e5qa1          82 TVIKSAIRQKKHVVTTSY   99 (182)
T ss_dssp             HHHHHHHHHTCEEECSSC
T ss_pred             HHHHHHHhhccceeeccc
Confidence            445555666666665543

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=98.28  E-value=2.7e-06  Score=62.39  Aligned_cols=99  Identities=16%  Similarity=0.211  Sum_probs=69.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHHh-------cC-C
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQAA-------MG-T  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~~-------~~-~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|++.++++++.+++.+++   |...   ..|-.+.+.++++       .+ .
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~   86 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   86 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            6899999997 89999999999999999999999988877765554   3322   2344454433321       23 6


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhcc--ccCCEEEEecCCC
Q 027668          107 MDGIIDTVSAVH-------------------------PLMPLIGLL--KSQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~vid~~g~~~-------------------------~~~~~~~~l--~~~g~iv~~g~~~  140 (220)
                      +|++++++|...                         ..+.++..+  +.+|+++.+++..
T Consensus        87 idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~  147 (259)
T d2ae2a_          87 LNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVS  147 (259)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGG
T ss_pred             ceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccc
Confidence            999999998642                         123344444  3568999988754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.27  E-value=1.6e-06  Score=61.68  Aligned_cols=102  Identities=30%  Similarity=0.338  Sum_probs=70.2

Q ss_pred             hhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHH---HHHcCCcEE-ecCCCHHHHHHhcCCcc
Q 027668           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA---VERLGADSF-LVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~---~~~~g~~~v-~~~~~~~~~~~~~~~~d  108 (220)
                      +++... +++|++||.+|+|+ |..++.+++..|.+|+.++..++-.+.+   .+++|.+.+ +...+-.......+.||
T Consensus        70 ml~~L~-l~~g~~VLeIGsGs-GY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD  147 (215)
T d1jg1a_          70 MLEIAN-LKPGMNILEVGTGS-GWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYD  147 (215)
T ss_dssp             HHHHHT-CCTTCCEEEECCTT-SHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHhhc-cCccceEEEecCCC-ChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcce
Confidence            344444 89999999999875 8888888888888899999987643333   245564322 22222111111124799


Q ss_pred             EEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668          109 GIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       109 ~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      .++-+.+....-...++.|++||+++..
T Consensus       148 ~Iiv~~a~~~ip~~l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         148 VIIVTAGAPKIPEPLIEQLKIGGKLIIP  175 (215)
T ss_dssp             EEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             eEEeecccccCCHHHHHhcCCCCEEEEE
Confidence            9988776665567889999999999874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.27  E-value=7.8e-06  Score=51.94  Aligned_cols=97  Identities=10%  Similarity=-0.052  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCccc-HHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      -.|.+|||+|+|.+|..-++.+...|++|++++..... ...+.++-+....-..-+.+    ...++++|+-+.+....
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~----dl~~~~lv~~at~d~~~   85 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET----LLDSCWLAIAATDDDTV   85 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGG----GGTTCSEEEECCSCHHH
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHH----HhCCCcEEeecCCCHHH
Confidence            35789999999999999999999999999988876543 22232222233222111221    22479999999998864


Q ss_pred             HHHHHhccccCCEEEEecCCCC
Q 027668          120 LMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      -.......++.|.+|.+.....
T Consensus        86 n~~i~~~a~~~~ilVNv~D~p~  107 (113)
T d1pjqa1          86 NQRVSDAAESRRIFCNVVDAPK  107 (113)
T ss_dssp             HHHHHHHHHHTTCEEEETTCTT
T ss_pred             HHHHHHHHHHcCCEEEeCCChh
Confidence            4567778889999998766443

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=98.26  E-value=8.4e-06  Score=59.64  Aligned_cols=99  Identities=18%  Similarity=0.282  Sum_probs=69.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc-----CCcE---EecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL-----GADS---FLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~-----g~~~---v~~~~~~~~~~~~-------~~  105 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+++     +...   ..|-.+++.++++       .+
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            5789999997 89999999999999999999999988766554433     2221   2355555544332       25


Q ss_pred             CccEEEEcCCCcc--------------------------cHHHHHhccc--cCCEEEEecCCC
Q 027668          106 TMDGIIDTVSAVH--------------------------PLMPLIGLLK--SQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~vid~~g~~~--------------------------~~~~~~~~l~--~~g~iv~~g~~~  140 (220)
                      ++|++|+++|...                          ..+.++..++  .+|+|+.+++..
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~  145 (258)
T d1iy8a_          83 RIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVG  145 (258)
T ss_dssp             CCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGG
T ss_pred             CCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHh
Confidence            8999999987421                          1233344443  579999998754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=6e-06  Score=60.44  Aligned_cols=76  Identities=16%  Similarity=0.188  Sum_probs=56.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC-cE----EecCCCHHHHHH-------hcC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA-DS----FLVSRDQDEMQA-------AMG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~-~~----v~~~~~~~~~~~-------~~~  105 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+++   +. ..    ..|-.+++.+++       ..+
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            4789999997 89999999999999999999999988877765543   21 12    234555543332       235


Q ss_pred             CccEEEEcCCCc
Q 027668          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~vid~~g~~  117 (220)
                      ++|++|+++|..
T Consensus        89 ~iD~lVnnAg~~  100 (257)
T d1xg5a_          89 GVDICINNAGLA  100 (257)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEeccccc
Confidence            899999999874

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.24  E-value=2.3e-06  Score=62.74  Aligned_cols=99  Identities=20%  Similarity=0.282  Sum_probs=67.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc---EEecCCCHHHHHH-------hc-CC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD---SFLVSRDQDEMQA-------AM-GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~---~v~~~~~~~~~~~-------~~-~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+++   +..   ...|-.+.+.+++       .. +.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   86 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   86 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence            6899999997 89999999999999999999999988877765544   222   2234445433322       22 36


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCCC
Q 027668          107 MDGIIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~vid~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~~  140 (220)
                      +|++++++|...                         ..+.++..|+  .+|+++.++...
T Consensus        87 idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~  147 (259)
T d1xq1a_          87 LDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIA  147 (259)
T ss_dssp             CSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC---
T ss_pred             cccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccc
Confidence            999999998742                         1233444453  469999988654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=98.24  E-value=7.1e-06  Score=59.65  Aligned_cols=99  Identities=14%  Similarity=0.231  Sum_probs=69.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-HHHHHHHcCCcE---EecCCCHHHHHHh-------cCCccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAVERLGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-~~~~~~~~g~~~---v~~~~~~~~~~~~-------~~~~d~  109 (220)
                      +|+.+||.|+ +++|.++++.+...|++|+++++++++ .+...++.|...   ..|-.+.+.++++       .+++|+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iDi   83 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCDI   83 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5789999997 899999999999999999999987653 344456777532   2344555444332       258999


Q ss_pred             EEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCCC
Q 027668          110 IIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAPE  140 (220)
Q Consensus       110 vid~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~~  140 (220)
                      +++++|...                         ..+.+++.|+  .+|+++.+++..
T Consensus        84 lVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~  141 (247)
T d2ew8a1          84 LVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTT  141 (247)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             EEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccch
Confidence            999998742                         1233455553  468999988654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.23  E-value=6.8e-06  Score=53.75  Aligned_cols=74  Identities=15%  Similarity=0.131  Sum_probs=60.4

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEEcCCCcc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVH  118 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~  118 (220)
                      +|+|+|+|.+|+.+++.+...|.+|++++.++++.+++..+++...++ |..+.+.+++.. +.+|.++-+++..+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~   77 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE   77 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH
Confidence            589999999999999999999999999999999888886677766544 445566666553 48999998888764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=2.2e-06  Score=61.46  Aligned_cols=96  Identities=26%  Similarity=0.264  Sum_probs=66.2

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc---CC-------cEEecCCCHHHHHHhcCC
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL---GA-------DSFLVSRDQDEMQAAMGT  106 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~---g~-------~~v~~~~~~~~~~~~~~~  106 (220)
                      .++||++||-+|+|+ |..++.+++..|.  +|+.++.+++-.+.+.+.+   +.       ..+... +-.......+.
T Consensus        73 ~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~g-D~~~~~~~~~~  150 (224)
T d1i1na_          73 QLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-DGRMGYAEEAP  150 (224)
T ss_dssp             TSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES-CGGGCCGGGCC
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEe-ecccccchhhh
Confidence            479999999999985 8888888888764  8999999987655553332   21       111111 11000011237


Q ss_pred             ccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668          107 MDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       107 ~d~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      ||.|+-+.......+..++.|++||+++..
T Consensus       151 fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         151 YDAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             EEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            999998777666677899999999999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.21  E-value=3.1e-06  Score=60.52  Aligned_cols=100  Identities=18%  Similarity=0.091  Sum_probs=67.6

Q ss_pred             hhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC---cEEecCCCHHHHHHhcCCccE
Q 027668           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---DSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d~  109 (220)
                      ++.... +++|++||-+|+|. |..++.+++. +.+|+.++.+++..+.+.+.+..   ..++..+...-. ...+.||.
T Consensus        62 ml~~L~-l~~g~~VLdIG~Gs-Gy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~-~~~~pfD~  137 (224)
T d1vbfa_          62 MLDELD-LHKGQKVLEIGTGI-GYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDR  137 (224)
T ss_dssp             HHHHTT-CCTTCEEEEECCTT-SHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEE
T ss_pred             HHHHhh-hcccceEEEecCCC-CHHHHHHHHH-hcccccccccHHHHHHHHHHHhcccccccccCchhhcc-hhhhhHHH
Confidence            344444 89999999999974 7777777775 67999999998876666444331   122222211110 11236999


Q ss_pred             EEEcCCCcccHHHHHhccccCCEEEEe
Q 027668          110 IIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       110 vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      |+-+.+........++.|++||++|..
T Consensus       138 Iiv~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         138 VVVWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             EEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             HHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence            987766666667788999999999875

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=2e-06  Score=63.65  Aligned_cols=98  Identities=24%  Similarity=0.376  Sum_probs=68.4

Q ss_pred             CCCEE-EEEcC-chHHHHHHHH-HHHCCCeEEEEeCCcccHHHHHHHc---CC--c-EEecCCCHHHHHHh-------cC
Q 027668           42 PGMHV-GVVGL-GGLGHVAVKF-AKAMGVKVTVISTSPSKKSEAVERL---GA--D-SFLVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~v-lI~G~-g~~G~~~~~~-~~~~g~~v~~~~~~~~~~~~~~~~~---g~--~-~v~~~~~~~~~~~~-------~~  105 (220)
                      .|++| ||.|+ +++|+++++. ++..|++|++++++.++.+++.+++   |.  . ...|-.+.+.++++       .+
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            36677 56687 8999998875 5566899999999999877766554   32  2 12355555444322       35


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCC
Q 027668          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       106 ~~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ++|++|+++|...                         ..+.++..|++.|+++.++..
T Consensus        81 ~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~  139 (275)
T d1wmaa1          81 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSI  139 (275)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCH
T ss_pred             CcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Confidence            8999999998631                         234467778889999998764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=3.2e-06  Score=61.88  Aligned_cols=76  Identities=18%  Similarity=0.296  Sum_probs=56.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~  107 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++   .|...   ..|-.+++.++++       .+++
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~i   89 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            6899999997 8999999999999999999999998877665443   34322   2344454443322       2589


Q ss_pred             cEEEEcCCCc
Q 027668          108 DGIIDTVSAV  117 (220)
Q Consensus       108 d~vid~~g~~  117 (220)
                      |++++++|..
T Consensus        90 DilvnnAG~~   99 (255)
T d1fmca_          90 DILVNNAGGG   99 (255)
T ss_dssp             CEEEECCCCC
T ss_pred             CEeeeCCcCC
Confidence            9999998874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.3e-05  Score=51.83  Aligned_cols=106  Identities=14%  Similarity=0.202  Sum_probs=77.9

Q ss_pred             hhhhhHh-ccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCcc
Q 027668           30 VYSPLRF-YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        30 a~~~l~~-~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d  108 (220)
                      .+.++.+ ....-.|++++|+|-|-+|.-.++.++.+|++|++++.++-+.-++. --|.. +.      .+++.....|
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~-~dG~~-v~------~~~~a~~~ad   81 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAA-MEGYE-VT------TMDEACQEGN   81 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCE-EC------CHHHHTTTCS
T ss_pred             HHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhh-cCceE-ee------ehhhhhhhcc
Confidence            3444444 34456899999999999999999999999999999999986644442 22333 32      2344455789


Q ss_pred             EEEEcCCCcccH-HHHHhccccCCEEEEecCCCCCc
Q 027668          109 GIIDTVSAVHPL-MPLIGLLKSQGKLVLLGAPEKPL  143 (220)
Q Consensus       109 ~vid~~g~~~~~-~~~~~~l~~~g~iv~~g~~~~~~  143 (220)
                      +++-|+|+.+.+ ..-++.|+++..+..+|-.+..+
T Consensus        82 ivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd~EI  117 (163)
T d1li4a1          82 IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEI  117 (163)
T ss_dssp             EEEECSSCSCSBCHHHHTTCCTTEEEEECSSSTTSB
T ss_pred             EEEecCCCccchhHHHHHhccCCeEEEEecccccee
Confidence            999999997654 46788899888888888665443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=98.13  E-value=9.8e-06  Score=59.36  Aligned_cols=99  Identities=14%  Similarity=0.239  Sum_probs=67.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHH----HHcCCcEE---ecCCCHHHHHHh-------cC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAV----ERLGADSF---LVSRDQDEMQAA-------MG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~----~~~g~~~v---~~~~~~~~~~~~-------~~  105 (220)
                      +|+++||.|+ +++|+++++.+...|++|+++++++. ..+++.    +..|....   .|-.+.+.++++       .+
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            6789999997 89999999999999999999998753 344332    23454332   244454444332       25


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCCC
Q 027668          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~vid~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~~  140 (220)
                      ++|++|+++|...                         ..+.++..++  .+|+|+.+++..
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~  144 (260)
T d1x1ta1          83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAH  144 (260)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccc
Confidence            8999999998742                         2234455554  368999987654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.1e-05  Score=59.38  Aligned_cols=101  Identities=23%  Similarity=0.251  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCcEE---ecCCCHHHH-------HHhcC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADSF---LVSRDQDEM-------QAAMG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~~v---~~~~~~~~~-------~~~~~  105 (220)
                      -+|+++||.|+ +++|+++++.+...|++|+++++++++++++.++.    +....   .+..+.+..       .+..+
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            36899999997 89999999999999999999999998877765432    33221   122333222       22235


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccc-cCCEEEEecCCCC
Q 027668          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLK-SQGKLVLLGAPEK  141 (220)
Q Consensus       106 ~~d~vid~~g~~~-------------------------~~~~~~~~l~-~~g~iv~~g~~~~  141 (220)
                      ..|++++++|...                         ..+.++..|+ .+|+++.+++..+
T Consensus        92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~  153 (269)
T d1xu9a_          92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAG  153 (269)
T ss_dssp             SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred             CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchh
Confidence            8999998877642                         1223344443 4789998876543

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=2.6e-05  Score=53.86  Aligned_cols=107  Identities=16%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             hhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHH---HHHc----CC-cEEecCCCHHHHHH
Q 027668           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA---VERL----GA-DSFLVSRDQDEMQA  102 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~---~~~~----g~-~~v~~~~~~~~~~~  102 (220)
                      .+++..+.--.+++|+|+|+|+.|.+++..+...|+ +++++.++.++.+++   .+++    +. ..+.+..+.+...+
T Consensus         7 ~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE   86 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred             HHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhh
Confidence            345544422467899999999999999999999999 888999987754433   2233    22 23345555555555


Q ss_pred             hcCCccEEEEcCCCcc------cHHHHHhccccCCEEEEecC
Q 027668          103 AMGTMDGIIDTVSAVH------PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       103 ~~~~~d~vid~~g~~~------~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ....+|++|+|++-..      .+..-...++++..++.+-.
T Consensus        87 ~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y  128 (182)
T d1vi2a1          87 ALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVY  128 (182)
T ss_dssp             HHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCC
T ss_pred             hhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhc
Confidence            5568999999986421      11112345666776666543

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.08  E-value=1.2e-05  Score=57.98  Aligned_cols=72  Identities=18%  Similarity=0.205  Sum_probs=53.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCC-CHHHHHHhcCCccEEEEcCCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSR-DQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~-~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      +|+++||.|+ +++|.++++.+...|++|++++++++..    ++.+...+. |-. +.+.+.+..+.+|++++++|..
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l----~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~   77 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL----KRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGP   77 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----HhcCCcEEEcchHHHHHHHHHHhCCCcEEEeccccc
Confidence            5789999997 8999999999999999999999886543    445544332 222 2344445557899999999864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=1.3e-05  Score=48.91  Aligned_cols=83  Identities=22%  Similarity=0.240  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCccc--HHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK--KSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~--~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      .|++|+|+|.|.+|+++++++...|++|++.+.....  .+++  +-+....+...+.+.+    .++|.++-+-|-+. 
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~--~~~~~~~~~~~~~~~~----~~~d~vi~SPGi~~-   76 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKL--PEAVERHTGSLNDEWL----MAADLIVASPGIAL-   76 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGS--CTTSCEEESBCCHHHH----HHCSEEEECTTSCT-
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHH--hhccceeecccchhhh----ccCCEEEECCCCCC-
Confidence            4688999999999999999999999999999986542  2222  1233444444333333    25799998888764 


Q ss_pred             HHHHHhccccCC
Q 027668          120 LMPLIGLLKSQG  131 (220)
Q Consensus       120 ~~~~~~~l~~~g  131 (220)
                      -...++..+..|
T Consensus        77 ~~~~~~~a~~~g   88 (93)
T d2jfga1          77 AHPSLSAAADAG   88 (93)
T ss_dssp             TSHHHHHHHHTT
T ss_pred             CCHHHHHHHHcC
Confidence            233444443333

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=7.6e-06  Score=57.66  Aligned_cols=95  Identities=16%  Similarity=0.216  Sum_probs=67.2

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhcCCccEEEEcCCCccc-
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAMGTMDGIIDTVSAVHP-  119 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~~g~~~~-  119 (220)
                      .++|+|.|+ |.+|..+++.+...|.+|+++++++++.... ..-+.+.+. |..+.+.+.+...+.|+||.++|.... 
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~-~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~~~   81 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRNDL   81 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc-cccccccccccccchhhHHHHhcCCCEEEEEeccCCch
Confidence            478999997 9999999999999999999999998765433 223444333 555667777777899999999986421 


Q ss_pred             ---------HHHHHhccccC--CEEEEecC
Q 027668          120 ---------LMPLIGLLKSQ--GKLVLLGA  138 (220)
Q Consensus       120 ---------~~~~~~~l~~~--g~iv~~g~  138 (220)
                               ....++.++..  .+++.++.
T Consensus        82 ~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          82 SPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             hhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence                     12344444443  46777654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.06  E-value=1.4e-06  Score=63.43  Aligned_cols=95  Identities=17%  Similarity=0.255  Sum_probs=64.9

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc---C-CcEE-ecCCCHHHHHHhc-CCccEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL---G-ADSF-LVSRDQDEMQAAM-GTMDGI  110 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~---g-~~~v-~~~~~~~~~~~~~-~~~d~v  110 (220)
                      .++||++||-.|+|+ |.++..+++..|.  +|+.++.+++..+.+.+.+   + ...+ +...+..  .... +.||.|
T Consensus        82 ~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~--~~~~~~~fD~V  158 (250)
T d1yb2a1          82 GLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA--DFISDQMYDAV  158 (250)
T ss_dssp             CCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT--TCCCSCCEEEE
T ss_pred             CCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeee--cccccceeeee
Confidence            389999999999875 7777788887654  8999999988777765543   2 2211 1112211  1112 279999


Q ss_pred             EEcCCC-cccHHHHHhccccCCEEEEe
Q 027668          111 IDTVSA-VHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       111 id~~g~-~~~~~~~~~~l~~~g~iv~~  136 (220)
                      |--... ...+..+.+.|++||+++.+
T Consensus       159 ~ld~p~p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         159 IADIPDPWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             EECCSCGGGSHHHHHHTEEEEEEEEEE
T ss_pred             eecCCchHHHHHHHHHhcCCCceEEEE
Confidence            854443 34678899999999999875

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=4.2e-06  Score=60.86  Aligned_cols=76  Identities=18%  Similarity=0.234  Sum_probs=58.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-EecCCCHHHHHH---hcCCccEEEEcCCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-FLVSRDQDEMQA---AMGTMDGIIDTVSA  116 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-v~~~~~~~~~~~---~~~~~d~vid~~g~  116 (220)
                      .|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+..+... ..|....+.++.   ..++.|.++++.|.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ag~   84 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAGF   84 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEecccc
Confidence            5789999997 999999999999999999999999988887766666532 334444443333   33589999999887


Q ss_pred             c
Q 027668          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      .
T Consensus        85 ~   85 (245)
T d2ag5a1          85 V   85 (245)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=1.1e-05  Score=59.00  Aligned_cols=99  Identities=22%  Similarity=0.297  Sum_probs=66.7

Q ss_pred             CCCEEEEEcC-c--hHHHHHHHHHHHCCCeEEEEeCCcccHHHH---HHHcCCcEE--ecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSKKSEA---VERLGADSF--LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g--~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~---~~~~g~~~v--~~~~~~~~~~~~-------~~~  106 (220)
                      +|+++||.|+ |  ++|.++++.+...|++|++..++++..+.+   .+..+....  .|..+.+.++++       .++
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence            6899999997 5  699999999999999999998886644333   223343323  244454433332       358


Q ss_pred             ccEEEEcCCCcc-----------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          107 MDGIIDTVSAVH-----------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~vid~~g~~~-----------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +|++++++|...                             ..+.+...++++|+++.++...
T Consensus        87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~  149 (256)
T d1ulua_          87 LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYA  149 (256)
T ss_dssp             EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGG
T ss_pred             ceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehH
Confidence            999999987631                             1123445667789999887654

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=8.4e-07  Score=58.16  Aligned_cols=46  Identities=17%  Similarity=0.240  Sum_probs=41.1

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEE
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVV   49 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~   49 (220)
                      +++++.++++|+++++++||++.+.+.|||+++...+  ..|++||++
T Consensus        86 ~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1          86 AVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             EEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             eeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            5789999999999999999999999999999997665  669998863

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.03  E-value=1.6e-05  Score=59.54  Aligned_cols=99  Identities=19%  Similarity=0.303  Sum_probs=66.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc---------ccHHHHHHHc---CCcEEecCCCHHH----HH---
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP---------SKKSEAVERL---GADSFLVSRDQDE----MQ---  101 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~---------~~~~~~~~~~---g~~~v~~~~~~~~----~~---  101 (220)
                      +|+++||.|+ +++|.++++.+...|++|++.+++.         +..++..+++   +.....+..+.+.    ++   
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence            5789999997 8999999999999999999986543         2233333333   3344445554322    22   


Q ss_pred             HhcCCccEEEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCCC
Q 027668          102 AAMGTMDGIIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAPE  140 (220)
Q Consensus       102 ~~~~~~d~vid~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~~  140 (220)
                      +..+++|++|+++|...                         ..+.++..|+  .+|+||.+++..
T Consensus        86 ~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~  151 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASAS  151 (302)
T ss_dssp             HHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHH
T ss_pred             HHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChh
Confidence            22358999999998742                         2344555663  468999998643

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=1e-06  Score=63.84  Aligned_cols=93  Identities=24%  Similarity=0.227  Sum_probs=61.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCC--CHH-------HHHHhcC--CccE
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSR--DQD-------EMQAAMG--TMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~--~~~-------~~~~~~~--~~d~  109 (220)
                      +|++|||.|+ |++|.++++.+...|++|+.+++.+.+..      .........  ..+       .+.+..+  ++|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA------SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS------SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc------cccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            4789999997 99999999999999999999887654311      111111111  111       1112222  6999


Q ss_pred             EEEcCCCcc--------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          110 IIDTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 vid~~g~~~--------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +|+++|...                          ..+.++..++++|+++.++...
T Consensus        75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~  131 (236)
T d1dhra_          75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKA  131 (236)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHH
Confidence            999988421                          2244566778899999998654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.01  E-value=2e-05  Score=54.27  Aligned_cols=91  Identities=20%  Similarity=0.203  Sum_probs=62.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCC---------HHHHHHhcCCccEEEEcC
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD---------QDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~---------~~~~~~~~~~~d~vid~~  114 (220)
                      ++|.|+|+|.+|++.+..+...|.+|+++++++++.+.+. +.+.........         .....+...++|++|-|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQ-DRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            6899999999999999999999999999999988877663 444322211110         112344456899999999


Q ss_pred             CCcccHHHH----HhccccCCEEEEe
Q 027668          115 SAVHPLMPL----IGLLKSQGKLVLL  136 (220)
Q Consensus       115 g~~~~~~~~----~~~l~~~g~iv~~  136 (220)
                      .... ....    ...+.++..++..
T Consensus        81 ~~~~-~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          81 PAIH-HASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             CGGG-HHHHHHHHGGGCCTTCEEEES
T ss_pred             chhH-HHHHHHHhhhccCCCCEEEEe
Confidence            8763 4444    3445555555543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.01  E-value=2.3e-05  Score=57.27  Aligned_cols=99  Identities=21%  Similarity=0.215  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-HHHHH---HHcCCcEE---ecCCCHHHHHH-------hcC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-KSEAV---ERLGADSF---LVSRDQDEMQA-------AMG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-~~~~~---~~~g~~~v---~~~~~~~~~~~-------~~~  105 (220)
                      -.|+++||.|+ +++|.++++.+...|++|++..+++++ .+.+.   ++.|.+..   .|-.+.+.+++       ..+
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   83 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence            35899999997 899999999999999999987655443 33332   34564322   24444443332       234


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCC
Q 027668          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       106 ~~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ++|++|+++|...                         ..+.++..++++|+++.+...
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~  142 (259)
T d1ja9a_          84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI  142 (259)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccc
Confidence            8999999998752                         235567778888888887654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.98  E-value=1.3e-05  Score=58.56  Aligned_cols=76  Identities=20%  Similarity=0.272  Sum_probs=56.7

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE---EecCCCHHHHHH-------hc-CC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQA-------AM-GT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~-------~~-~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++   .+...   ..|-.+.+.+++       .. +.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g~   84 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK   84 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            7899999997 9999999999999999999999998876665544   34322   235555543332       22 35


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      .|++++++|..
T Consensus        85 idilinnag~~   95 (258)
T d1ae1a_          85 LNILVNNAGVV   95 (258)
T ss_dssp             CCEEEECCCCC
T ss_pred             cEEEecccccc
Confidence            89999998875

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.97  E-value=0.00012  Score=48.76  Aligned_cols=98  Identities=15%  Similarity=0.211  Sum_probs=76.4

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .-+-.|++++|.|=|-+|.-.++-++.+|++|+++..++-+.-++  .+.--.+.      .+.+.....|++|-++|+.
T Consensus        18 ~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA--~mdGf~v~------~~~~a~~~aDi~vTaTGn~   89 (163)
T d1v8ba1          18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA--VMEGFNVV------TLDEIVDKGDFFITCTGNV   89 (163)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH--HTTTCEEC------CHHHHTTTCSEEEECCSSS
T ss_pred             CceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH--HhcCCccC------chhHccccCcEEEEcCCCC
Confidence            445789999999999999999999999999999999998665444  23222232      2445566899999999998


Q ss_pred             ccH-HHHHhccccCCEEEEecCCCCCc
Q 027668          118 HPL-MPLIGLLKSQGKLVLLGAPEKPL  143 (220)
Q Consensus       118 ~~~-~~~~~~l~~~g~iv~~g~~~~~~  143 (220)
                      +.+ ..-++.|+.+..+...|-.+..+
T Consensus        90 ~vI~~~h~~~MKdgaIl~N~GHfd~EI  116 (163)
T d1v8ba1          90 DVIKLEHLLKMKNNAVVGNIGHFDDEI  116 (163)
T ss_dssp             SSBCHHHHTTCCTTCEEEECSSTTTSB
T ss_pred             ccccHHHHHHhhCCeEEEeccccchhh
Confidence            754 46788999999998888766443

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.97  E-value=1.2e-05  Score=59.30  Aligned_cols=76  Identities=18%  Similarity=0.316  Sum_probs=56.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC------cEEecCCCHHHHHHh-------c
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA------DSFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~------~~v~~~~~~~~~~~~-------~  104 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+++   +.      ....|-.+.+.++++       .
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5789999997 89999999999999999999999988877765543   21      122344555444332       2


Q ss_pred             CCccEEEEcCCCc
Q 027668          105 GTMDGIIDTVSAV  117 (220)
Q Consensus       105 ~~~d~vid~~g~~  117 (220)
                      +++|++|+++|..
T Consensus        84 g~iDilvnnAG~~   96 (272)
T d1xkqa_          84 GKIDVLVNNAGAA   96 (272)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCceEEEeCCccc
Confidence            4899999998763

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.97  E-value=1.9e-05  Score=57.50  Aligned_cols=99  Identities=13%  Similarity=0.096  Sum_probs=64.6

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHH---HHcCCc----EEecCC-CHHHHHH-------hcC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGAD----SFLVSR-DQDEMQA-------AMG  105 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~---~~~g~~----~v~~~~-~~~~~~~-------~~~  105 (220)
                      +|++|||.|+ +++|.+++..+...|++|+++.++.++.+.+.   ...+..    ...|.. +.+.+++       ..+
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g   83 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcC
Confidence            5899999997 89999999999999999999988776544432   223321    122332 2222322       225


Q ss_pred             CccEEEEcCCCcc-----------------cHHHHHhccc-----cCCEEEEecCCC
Q 027668          106 TMDGIIDTVSAVH-----------------PLMPLIGLLK-----SQGKLVLLGAPE  140 (220)
Q Consensus       106 ~~d~vid~~g~~~-----------------~~~~~~~~l~-----~~g~iv~~g~~~  140 (220)
                      ++|++++++|...                 ..+.++..|.     ++|+++.++...
T Consensus        84 ~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~  140 (254)
T d1sbya1          84 TVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVT  140 (254)
T ss_dssp             CCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechh
Confidence            8999999998753                 1233444442     358888887654

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.96  E-value=7.4e-06  Score=56.09  Aligned_cols=80  Identities=21%  Similarity=0.232  Sum_probs=57.3

Q ss_pred             hhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC--c-EEecCCCHHHHHHhcCCccE
Q 027668           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA--D-SFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~--~-~v~~~~~~~~~~~~~~~~d~  109 (220)
                      +++......++++|+|+|+|+++.+++..+...+.+++++.|+.++.+.+.+.++.  . ......   .  .....+|+
T Consensus         8 ~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~---~--~~~~~~di   82 (171)
T d1p77a1           8 DLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD---S--IPLQTYDL   82 (171)
T ss_dssp             HHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG---G--CCCSCCSE
T ss_pred             HHHHcCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhc---c--ccccccce
Confidence            45544444688999999999999999988887677999999999988888777752  1 111111   0  11247999


Q ss_pred             EEEcCCCc
Q 027668          110 IIDTVSAV  117 (220)
Q Consensus       110 vid~~g~~  117 (220)
                      +|+|++..
T Consensus        83 iIN~tp~g   90 (171)
T d1p77a1          83 VINATSAG   90 (171)
T ss_dssp             EEECCCC-
T ss_pred             eeeccccc
Confidence            99998764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.96  E-value=7e-05  Score=55.00  Aligned_cols=99  Identities=21%  Similarity=0.254  Sum_probs=69.1

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHH---HHcCCcEE---ecCCCHHHHHH-------hcC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAV---ERLGADSF---LVSRDQDEMQA-------AMG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~---~~~g~~~v---~~~~~~~~~~~-------~~~  105 (220)
                      -.|+++||.|+ +++|.++++.+...|++|++++++++ ..+++.   ++.|.+..   .|-.+++.+++       ..+
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            35799999997 99999999999999999999887744 333332   34554332   24444443332       235


Q ss_pred             CccEEEEcCCCcc-------------------------cHHHHHhccccCCEEEEecCC
Q 027668          106 TMDGIIDTVSAVH-------------------------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       106 ~~d~vid~~g~~~-------------------------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ++|++++++|...                         ..+.++..|+++|+++.++..
T Consensus        96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~  154 (272)
T d1g0oa_          96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSI  154 (272)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCG
T ss_pred             CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccc
Confidence            8999999987742                         235567778889999888754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.95  E-value=5.5e-05  Score=55.25  Aligned_cols=76  Identities=18%  Similarity=0.239  Sum_probs=54.1

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHH---HHcCCcEE---ecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAV---ERLGADSF---LVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~---~~~g~~~v---~~~~~~~~~~~~-------~~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|++++++++ ..+.+.   ++.|....   .|-.+.+.++++       .++
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   85 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999997 89999999999999999999998864 333332   34554322   344555444332       248


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++++++|..
T Consensus        86 iDiLVnnAG~~   96 (261)
T d1geea_          86 LDVMINNAGLE   96 (261)
T ss_dssp             CCEEEECCCCC
T ss_pred             CCEeeccceec
Confidence            99999998874

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.7e-05  Score=59.23  Aligned_cols=77  Identities=21%  Similarity=0.271  Sum_probs=57.2

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc--------CCcE---EecCCCHHHHHHh-----
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL--------GADS---FLVSRDQDEMQAA-----  103 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~--------g~~~---v~~~~~~~~~~~~-----  103 (220)
                      -+|+++||.|+ +++|.++++.+...|++|++++++.++.+.+.+++        +...   ..|-.+.+.++++     
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            47899999997 89999999999999999999999988776665543        2222   2344555444332     


Q ss_pred             --cCCccEEEEcCCCc
Q 027668          104 --MGTMDGIIDTVSAV  117 (220)
Q Consensus       104 --~~~~d~vid~~g~~  117 (220)
                        .+++|++|+++|..
T Consensus        90 ~~~G~iDiLVnnAg~~  105 (297)
T d1yxma1          90 DTFGKINFLVNNGGGQ  105 (297)
T ss_dssp             HHHSCCCEEEECCCCC
T ss_pred             HHhCCeEEEEeecccc
Confidence              24899999998864

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.93  E-value=7.8e-06  Score=58.41  Aligned_cols=96  Identities=22%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             CCCCCCEEEEEcCchHHHHHHH---HHHHCCC----eEEEEeCCcccHHHHHHHc--------CC--cEEecCCCHHHHH
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVK---FAKAMGV----KVTVISTSPSKKSEAVERL--------GA--DSFLVSRDQDEMQ  101 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~---~~~~~g~----~v~~~~~~~~~~~~~~~~~--------g~--~~v~~~~~~~~~~  101 (220)
                      .++||++||.+|+|+ |..++.   ++...|+    +|+.++..++-.+.+.+.+        +.  -.+...+-.+ ..
T Consensus        77 ~l~~g~~VLeIGtGs-GY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~-~~  154 (223)
T d1r18a_          77 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GY  154 (223)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CC
T ss_pred             ccCCCCeEEEecCCC-CHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccc-cc
Confidence            479999999999753 544444   4444453    7999998877544443221        21  1122221111 00


Q ss_pred             HhcCCccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668          102 AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       102 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                      ...+.||.|+-+.+....-+..++.|++||+++..
T Consensus       155 ~~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         155 PPNAPYNAIHVGAAAPDTPTELINQLASGGRLIVP  189 (223)
T ss_dssp             GGGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             ccccceeeEEEEeechhchHHHHHhcCCCcEEEEE
Confidence            11237999988777766667889999999999874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.92  E-value=2.1e-05  Score=57.56  Aligned_cols=76  Identities=22%  Similarity=0.331  Sum_probs=56.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH----HcCCcE---EecCCCHHHHHHh-------cCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE----RLGADS---FLVSRDQDEMQAA-------MGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~----~~g~~~---v~~~~~~~~~~~~-------~~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+    ++|...   ..|-.+++.++++       .++
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   87 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999997 899999999999999999999999887655433    445432   2345555444322       358


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++|+++|..
T Consensus        88 iDilVnnAg~~   98 (260)
T d1h5qa_          88 ISGLIANAGVS   98 (260)
T ss_dssp             EEEEEECCCCC
T ss_pred             CcEeccccccc
Confidence            99999998764

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.91  E-value=1.8e-05  Score=57.80  Aligned_cols=75  Identities=17%  Similarity=0.240  Sum_probs=55.8

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCCcc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~d  108 (220)
                      |+.+||.|+ +++|+++++.+...|++|+++++++++.+++.++   .|...   ..|-.+.+.++++       .+++|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            678899997 8999999999999999999999998877666544   34332   2344455444322       35899


Q ss_pred             EEEEcCCCc
Q 027668          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~vid~~g~~  117 (220)
                      ++|+++|..
T Consensus        82 ilVnnAG~~   90 (257)
T d2rhca1          82 VLVNNAGRP   90 (257)
T ss_dssp             EEEECCCCC
T ss_pred             EEEeccccc
Confidence            999999874

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.90  E-value=2.1e-05  Score=56.76  Aligned_cols=71  Identities=20%  Similarity=0.184  Sum_probs=53.3

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHh-------cCCccEEEEc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAA-------MGTMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~-------~~~~d~vid~  113 (220)
                      .|+++||.|+ +++|.++++.+...|++|++++++++..+.+     .....|-.+.+.++++       .+++|+++++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~-----~~~~~Dv~~~~~v~~~~~~~~~~~g~iDiLVnn   80 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGL-----FGVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSN   80 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTTS-----EEEECCTTCHHHHHHHHHHHHHHHSSCSEEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhcCc-----eEEEEecCCHHHHHHHHHHHHHhcCCceEEEee
Confidence            5789999997 8999999999999999999999987754432     1223455555444332       2489999999


Q ss_pred             CCCc
Q 027668          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      +|..
T Consensus        81 AG~~   84 (237)
T d1uzma1          81 AGLS   84 (237)
T ss_dssp             CSCC
T ss_pred             eccc
Confidence            8864

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.89  E-value=4.5e-05  Score=55.51  Aligned_cols=74  Identities=19%  Similarity=0.261  Sum_probs=54.1

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcE---EecCCCHHHHHHh-------cCCccE
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADS---FLVSRDQDEMQAA-------MGTMDG  109 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~---v~~~~~~~~~~~~-------~~~~d~  109 (220)
                      +.+||.|+ +++|+++++.+...|++|+++++++++.+++.++   .|...   ..|-.+.+.++++       .+++|+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            34688897 8999999999999999999999998877666544   34332   2355555444332       358999


Q ss_pred             EEEcCCCc
Q 027668          110 IIDTVSAV  117 (220)
Q Consensus       110 vid~~g~~  117 (220)
                      +|+++|..
T Consensus        82 lVnnAG~~   89 (255)
T d1gega_          82 IVNNAGVA   89 (255)
T ss_dssp             EEECCCCC
T ss_pred             EEeccccc
Confidence            99998864

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.89  E-value=1.7e-05  Score=58.21  Aligned_cols=75  Identities=16%  Similarity=0.287  Sum_probs=55.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC-----c-EEecCCCHHHHHHh-------c
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA-----D-SFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~-----~-~v~~~~~~~~~~~~-------~  104 (220)
                      +|+.+||.|+ +++|.++++.+...|++|+++++++++.+++.+++   |.     . ...|-.+.+.++++       .
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5788999997 89999999999999999999999988877765543   21     1 12355555444332       2


Q ss_pred             CCccEEEEcCCC
Q 027668          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~vid~~g~  116 (220)
                      +++|++++++|.
T Consensus        84 g~iDilvnnAG~   95 (264)
T d1spxa_          84 GKLDILVNNAGA   95 (264)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEeeccccc
Confidence            489999999875

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.88  E-value=1.6e-05  Score=51.91  Aligned_cols=73  Identities=19%  Similarity=0.300  Sum_probs=56.5

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEEcCCCcc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVH  118 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~  118 (220)
                      +++|+|.|.+|+.+++.+...|.+|++++.++++.+++ +..|...++ +..+++.+.+.. ..+|.+|-+++...
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~-~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~   76 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAY-ASYATHAVIANATEENELLSLGIRNFEYVIVAIGANI   76 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHT-TTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHH-HHhCCcceeeecccchhhhccCCccccEEEEEcCchH
Confidence            57888999999999999999999999999999888877 456654443 444455555542 37899998887653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.87  E-value=3.3e-05  Score=55.72  Aligned_cols=97  Identities=12%  Similarity=0.189  Sum_probs=67.0

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCe-------EEEEeCCcccHHHHHHHc---CCcE---EecCCCHHHHHH-------h
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVK-------VTVISTSPSKKSEAVERL---GADS---FLVSRDQDEMQA-------A  103 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~-------v~~~~~~~~~~~~~~~~~---g~~~---v~~~~~~~~~~~-------~  103 (220)
                      .|||.|+ +++|+++++.+...|++       |+..+++.++.+++.+++   |...   ..|-.+.+.+++       .
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4678897 89999999999999987       889999988777665543   4321   235555544432       2


Q ss_pred             cCCccEEEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCCCC
Q 027668          104 MGTMDGIIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAPEK  141 (220)
Q Consensus       104 ~~~~d~vid~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~~~  141 (220)
                      .+++|++|+++|...                         ..+.++..|+  ++|+++.+++...
T Consensus        83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~  147 (240)
T d2bd0a1          83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAA  147 (240)
T ss_dssp             TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhh
Confidence            358999999998742                         2244555664  4789999876543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.86  E-value=3.4e-05  Score=55.84  Aligned_cols=97  Identities=19%  Similarity=0.239  Sum_probs=64.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeC-CcccHHHHHH---HcCCcE---EecCCCHHHHHHh-------cCCcc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVIST-SPSKKSEAVE---RLGADS---FLVSRDQDEMQAA-------MGTMD  108 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~-~~~~~~~~~~---~~g~~~---v~~~~~~~~~~~~-------~~~~d  108 (220)
                      ..|||.|+ +++|+++++.+...|++|++.+. +++..+.+.+   ++|...   ..|-.+.+.++++       .+++|
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            35778887 89999999999999999988754 4444444433   445432   2345555444322       25899


Q ss_pred             EEEEcCCCcc-------------------------cHHHHHhcc--ccCCEEEEecCCC
Q 027668          109 GIIDTVSAVH-------------------------PLMPLIGLL--KSQGKLVLLGAPE  140 (220)
Q Consensus       109 ~vid~~g~~~-------------------------~~~~~~~~l--~~~g~iv~~g~~~  140 (220)
                      ++++++|...                         ..+.+++.|  +++|+|+.+++..
T Consensus        82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~  140 (244)
T d1edoa_          82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVV  140 (244)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTH
T ss_pred             ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChh
Confidence            9999998742                         224455555  4679999998753

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.86  E-value=1.2e-05  Score=58.92  Aligned_cols=99  Identities=19%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHH---HcCC-c-EEecCCCHHHHHHhc-C
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVE---RLGA-D-SFLVSRDQDEMQAAM-G  105 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~---~~g~-~-~v~~~~~~~~~~~~~-~  105 (220)
                      +.... ++||++||=.|+|+ |..++.+|+..|  .+|+.++.+++..+.+.+   .+|. + ..+...+..  ..+. .
T Consensus        96 i~~l~-i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~--~~~~~~  171 (266)
T d1o54a_          96 AMMLD-VKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS--EGFDEK  171 (266)
T ss_dssp             HHHTT-CCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG--GCCSCC
T ss_pred             HHhhC-CCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc--cccccc
Confidence            44444 89999999999886 778888898875  489999999887666543   4453 2 222222211  1111 2


Q ss_pred             CccEEEEcCCCc-ccHHHHHhccccCCEEEEe
Q 027668          106 TMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       106 ~~d~vid~~g~~-~~~~~~~~~l~~~g~iv~~  136 (220)
                      .+|.||--...+ ..+..+.+.|++||+++.+
T Consensus       172 ~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         172 DVDALFLDVPDPWNYIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             SEEEEEECCSCGGGTHHHHHHHEEEEEEEEEE
T ss_pred             ceeeeEecCCCHHHHHHHHHhhcCCCCEEEEE
Confidence            688887655554 4678899999999999865

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.85  E-value=1.9e-05  Score=58.21  Aligned_cols=75  Identities=19%  Similarity=0.336  Sum_probs=55.8

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC------cEEecCCCHHHHHHh-------c
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA------DSFLVSRDQDEMQAA-------M  104 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~------~~v~~~~~~~~~~~~-------~  104 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.+++   |.      ....|-.+.+.++++       .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            5789999997 89999999999999999999999988777665543   21      122354555444332       2


Q ss_pred             CCccEEEEcCCC
Q 027668          105 GTMDGIIDTVSA  116 (220)
Q Consensus       105 ~~~d~vid~~g~  116 (220)
                      +++|++++++|.
T Consensus        83 G~iDilVnnAG~   94 (274)
T d1xhla_          83 GKIDILVNNAGA   94 (274)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCceEEEeeccc
Confidence            489999999875

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.85  E-value=2.8e-05  Score=57.87  Aligned_cols=76  Identities=20%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH----cCCcE-E--ecCCCHHHHHH-------hcCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LGADS-F--LVSRDQDEMQA-------AMGT  106 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~g~~~-v--~~~~~~~~~~~-------~~~~  106 (220)
                      +|+++||.|+ +++|.++++.+...|++|+++++++++.+++.++    .|... .  .|-.+.+.+++       ..++
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  103 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  103 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccc
Confidence            5799999997 9999999999999999999999998876655443    34322 2  24444444332       2248


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +|++++++|..
T Consensus       104 iDilvnnAg~~  114 (294)
T d1w6ua_         104 PNIVINNAAGN  114 (294)
T ss_dssp             CSEEEECCCCC
T ss_pred             cchhhhhhhhc
Confidence            99999999874

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.84  E-value=3.6e-05  Score=51.47  Aligned_cols=87  Identities=16%  Similarity=0.273  Sum_probs=66.7

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLI  124 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~  124 (220)
                      +|.++|+|.+|.+.+.-+...|.++++..++.++.+++.+++|...+-   +.   .+..+..|+||-|+-.. .+...+
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~---~~---~~~~~~~dvIilavkp~-~~~~vl   74 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAM---SH---QDLIDQVDLVILGIKPQ-LFETVL   74 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCS---SH---HHHHHTCSEEEECSCGG-GHHHHH
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeec---hh---hhhhhccceeeeecchH-hHHHHh
Confidence            478899999999999977778899999999999888887888865331   22   22234789999999754 577888


Q ss_pred             hccccCCEEEEecC
Q 027668          125 GLLKSQGKLVLLGA  138 (220)
Q Consensus       125 ~~l~~~g~iv~~g~  138 (220)
                      ..++++..++.+..
T Consensus        75 ~~l~~~~~iis~~a   88 (152)
T d2ahra2          75 KPLHFKQPIISMAA   88 (152)
T ss_dssp             TTSCCCSCEEECCT
T ss_pred             hhcccceeEecccc
Confidence            88888777765543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.83  E-value=2.9e-05  Score=55.50  Aligned_cols=101  Identities=24%  Similarity=0.256  Sum_probs=68.6

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcC---C-cEEe-cCCCHHHHHHhcCC
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLG---A-DSFL-VSRDQDEMQAAMGT  106 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g---~-~~v~-~~~~~~~~~~~~~~  106 (220)
                      +..+. ++||++||=+|+|+ |..+..+++..|.  +|++++.++...+.+.+...   . ..+. +....+........
T Consensus        66 l~~l~-i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~  143 (227)
T d1g8aa_          66 LKNFP-IKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPK  143 (227)
T ss_dssp             CCCCC-CCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCC
T ss_pred             ccccc-cCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccc
Confidence            44444 89999999999975 8888899998764  89999999987776644332   2 2222 22233332222347


Q ss_pred             ccEEEEcCCCcc----cHHHHHhccccCCEEEEe
Q 027668          107 MDGIIDTVSAVH----PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       107 ~d~vid~~g~~~----~~~~~~~~l~~~g~iv~~  136 (220)
                      +|+++......+    .+..+.+.|+++|.++++
T Consensus       144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            898886554432    255677889999998875

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=2.8e-05  Score=56.80  Aligned_cols=97  Identities=23%  Similarity=0.281  Sum_probs=66.7

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcC------C-cEEecCCCHHHHHHhc-CCc
Q 027668           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLG------A-DSFLVSRDQDEMQAAM-GTM  107 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g------~-~~v~~~~~~~~~~~~~-~~~  107 (220)
                      ..++||++||=.|+|+ |.++..+|+..|.  +|+.++.+++..+.+.+++.      . ...+...+.... .+. +.|
T Consensus        92 l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~-~~~~~~f  169 (264)
T d1i9ga_          92 GDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS-ELPDGSV  169 (264)
T ss_dssp             TTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC-CCCTTCE
T ss_pred             hCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccc-cccCCCc
Confidence            3489999999999875 8888899998875  89999999887776644321      1 222222221110 111 379


Q ss_pred             cEEEEcCCCc-ccHHHHHhccccCCEEEEe
Q 027668          108 DGIIDTVSAV-HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       108 d~vid~~g~~-~~~~~~~~~l~~~g~iv~~  136 (220)
                      |.||--...+ ..+..+.+.|++||+++.+
T Consensus       170 DaV~ldlp~P~~~l~~~~~~LkpGG~lv~~  199 (264)
T d1i9ga_         170 DRAVLDMLAPWEVLDAVSRLLVAGGVLMVY  199 (264)
T ss_dssp             EEEEEESSCGGGGHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEecCCHHHHHHHHHhccCCCCEEEEE
Confidence            9887555543 4577899999999999875

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=97.83  E-value=0.00016  Score=48.81  Aligned_cols=133  Identities=14%  Similarity=0.229  Sum_probs=80.4

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH--HcC-------CcE-------Ee--------cCCCHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE--RLG-------ADS-------FL--------VSRDQDEM  100 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~--~~g-------~~~-------v~--------~~~~~~~~  100 (220)
                      +|.|.|-|.+|+++.+.+...+.+++.+.......+.++.  ++.       .+.       ++        +..+++.+
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~i   81 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPENI   81 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGGC
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHHC
Confidence            5789999999999999998888888887764333232222  222       110       11        11122222


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCcc----ccccCCcEEEEeeccCHHHHHHHHHHHH
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAF----PLLTGEKIVGGSLIGGLKETQEMIDFAA  176 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~  176 (220)
                      .+..-++|+|+||+|.....+.+..+++.+.+-|++..+....+.-.+    .-+.++.++......+...+-.+++.+.
T Consensus        82 ~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d~~~iV~GVN~~~~~~~~~IIS~aSCTtn~laP~~k~l~  161 (169)
T d1dssg1          82 PWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIK  161 (169)
T ss_dssp             CHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSSCBCCTTTSGGGCCTTCCEEECCCTTHHHHHHHHHHHH
T ss_pred             CccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccccceeeecccccccCCCCCEEEChhHHHHHHHHHHHHHH
Confidence            222228999999999987788889999988888888776533211111    1123444566554455555666666554


Q ss_pred             h
Q 027668          177 K  177 (220)
Q Consensus       177 ~  177 (220)
                      +
T Consensus       162 ~  162 (169)
T d1dssg1         162 H  162 (169)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.82  E-value=2.5e-06  Score=61.63  Aligned_cols=92  Identities=23%  Similarity=0.306  Sum_probs=60.8

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCC--H-------HHHHHhc--CCccEE
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD--Q-------DEMQAAM--GTMDGI  110 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~--~-------~~~~~~~--~~~d~v  110 (220)
                      +.+|||.|+ +++|.++++.+...|++|+++++++++...      .........  .       +......  +.+|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD------SNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS------EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhccc------ccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            346899997 999999999999999999999988653211      111111111  1       1112211  379999


Q ss_pred             EEcCCCcc--------------------------cHHHHHhccccCCEEEEecCCC
Q 027668          111 IDTVSAVH--------------------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 id~~g~~~--------------------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      |+++|...                          ..+..+..|+++|+++.++...
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~  131 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAA  131 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHH
Confidence            99988521                          1244566778899999998653

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.81  E-value=6e-05  Score=50.31  Aligned_cols=84  Identities=18%  Similarity=0.272  Sum_probs=60.9

Q ss_pred             EEEEEcCchHHHHHHH-HHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           45 HVGVVGLGGLGHVAVK-FAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~-~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      +|.++|+|.+|.+.++ +++.-+.++++.++++++.+.+.+++|....-+..+       ....|+||-|+-.. .+...
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-------v~~~Div~lavkP~-~~~~v   73 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-------LHSDDVLILAVKPQ-DMEAA   73 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-------CCTTSEEEECSCHH-HHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-------ccccceEEEecCHH-HHHHh
Confidence            5788999999998888 445444799999999999888877888764322211       13579999888754 46777


Q ss_pred             HhccccCCEEEEe
Q 027668          124 IGLLKSQGKLVLL  136 (220)
Q Consensus       124 ~~~l~~~g~iv~~  136 (220)
                      ++.+++.+.++..
T Consensus        74 ~~~l~~~~~~viS   86 (152)
T d1yqga2          74 CKNIRTNGALVLS   86 (152)
T ss_dssp             HTTCCCTTCEEEE
T ss_pred             HHHHhhcccEEee
Confidence            7777776666543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=4.6e-05  Score=55.06  Aligned_cols=105  Identities=23%  Similarity=0.227  Sum_probs=67.7

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHH---HHcCCc--EEecCCCHHHHHHhcC
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGAD--SFLVSRDQDEMQAAMG  105 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~---~~~g~~--~v~~~~~~~~~~~~~~  105 (220)
                      +..+.....++||++||=+|||. |..+..+++..|++|+.++.++...+.+.   +..|..  ..+...+.... ...+
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~-~~~~   99 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY-VANE   99 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC-CCSS
T ss_pred             HHHHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc-cccC
Confidence            34455666689999999999875 66777888888999999999987655442   234531  11111221111 1123


Q ss_pred             CccEEEEcCCC------cccHHHHHhccccCCEEEEec
Q 027668          106 TMDGIIDTVSA------VHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       106 ~~d~vid~~g~------~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      .||.|+-.-..      ...+..+.+.|+|||+++...
T Consensus       100 ~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         100 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            79998753221      123566788999999998753

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.75  E-value=0.00016  Score=52.35  Aligned_cols=97  Identities=12%  Similarity=0.097  Sum_probs=64.5

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCcEEecCCCHH----HHHHhcCCccEEEEcCCC
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGADSFLVSRDQD----EMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~----~~~~~~~~~d~vid~~g~  116 (220)
                      ++||.|+ +++|+++++.+...|++|++.+++.++.+++.+   .+....+.+..+.+    .+.+..+++|++|+++|.
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg~   81 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIF   81 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence            6789997 899999999999999999999988877666532   22233343444422    222333689999987764


Q ss_pred             cc--------------------------cHHHHHhccc--cCCEEEEecCCCC
Q 027668          117 VH--------------------------PLMPLIGLLK--SQGKLVLLGAPEK  141 (220)
Q Consensus       117 ~~--------------------------~~~~~~~~l~--~~g~iv~~g~~~~  141 (220)
                      ..                          ..+.++..|+  .+|+|+.+++...
T Consensus        82 ~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~  134 (252)
T d1zmta1          82 APEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATP  134 (252)
T ss_dssp             CCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTT
T ss_pred             CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccc
Confidence            21                          1133444443  4699999987653

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=97.74  E-value=1.6e-05  Score=55.22  Aligned_cols=97  Identities=14%  Similarity=0.080  Sum_probs=63.4

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-----------------EecCCCHHHHHH
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-----------------FLVSRDQDEMQA  102 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-----------------v~~~~~~~~~~~  102 (220)
                      +.||.+||.+|||. |..+..+++ .|++|+.++.++...+.+.+..+...                 .+..+-.+....
T Consensus        18 ~~~~~rvLd~GCG~-G~~a~~la~-~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGK-SQDMSWLSG-QGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCTTCEEEETTTCC-SHHHHHHHH-HCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCEEEEecCcC-CHHHHHHHH-cCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            78999999999985 777777776 59999999999998877755443210                 000000000011


Q ss_pred             hcCCccEEEEcCCCcc--------cHHHHHhccccCCEEEEecC
Q 027668          103 AMGTMDGIIDTVSAVH--------PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       103 ~~~~~d~vid~~g~~~--------~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ....+|.|++......        .++.+.+.|++||++++...
T Consensus        96 ~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~  139 (201)
T d1pjza_          96 DIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITL  139 (201)
T ss_dssp             HHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEE
T ss_pred             cccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEc
Confidence            1126899988554321        24567788999999876543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.72  E-value=0.00014  Score=49.02  Aligned_cols=87  Identities=21%  Similarity=0.135  Sum_probs=59.7

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-cEEecCCCHHHHHHhcCCccEEEEcCCCcc---cH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---PL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---~~  120 (220)
                      +|.|+|+|.+|...++.++..|.+|++.++++++.+++ ++.|. +...+.  .    +.....|+||-|+....   .+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a-~~~~~~~~~~~~--~----~~~~~~DiIilavp~~~~~~vl   74 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA-VERQLVDEAGQD--L----SLLQTAKIIFLCTPIQLILPTL   74 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTSCSEEESC--G----GGGTTCSEEEECSCHHHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHH-HHhhccceeeee--c----ccccccccccccCcHhhhhhhh
Confidence            58899999999999999999999999999998887776 56664 443322  1    12357899998886542   22


Q ss_pred             HHHHhccccCCEEEEecC
Q 027668          121 MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~  138 (220)
                      +.....++++..++.++.
T Consensus        75 ~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          75 EKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             HHHGGGSCTTCEEEECCS
T ss_pred             hhhhhhcccccceeeccc
Confidence            333344455555555543

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.71  E-value=5e-08  Score=66.73  Aligned_cols=50  Identities=8%  Similarity=-0.092  Sum_probs=40.9

Q ss_pred             CcccCcceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcC
Q 027668            1 MVADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGL   51 (220)
Q Consensus         1 ~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~   51 (220)
                      +++|++.++++|+++|+++||++++.++|||+++.... ...+++|||.|+
T Consensus       105 ~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~~-~~~~~~Vli~ga  154 (162)
T d1tt7a1         105 ASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLEET-PGALKDILQNRI  154 (162)
T ss_dssp             EEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECSTTH-HHHHHHTTTTCC
T ss_pred             EEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEECC
Confidence            36899999999999999999999999999998865432 345567777775

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=7.5e-05  Score=56.15  Aligned_cols=102  Identities=20%  Similarity=0.206  Sum_probs=65.8

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcC--------------CcE--EecCC
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLG--------------ADS--FLVSR   95 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g--------------~~~--v~~~~   95 (220)
                      +.... ++||++||=.|+|+ |.++..+|+..|.  +|+.++.+++..+.+.+++.              .+.  +...+
T Consensus        91 l~~l~-i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d  168 (324)
T d2b25a1          91 LSMMD-INPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  168 (324)
T ss_dssp             HHHHT-CCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHhC-CCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence            44444 89999999999876 8888999998875  89999999887666644321              011  11111


Q ss_pred             CHHHHHHhc-CCccEEEEcCCCc-ccHHHHHhccccCCEEEEec
Q 027668           96 DQDEMQAAM-GTMDGIIDTVSAV-HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus        96 ~~~~~~~~~-~~~d~vid~~g~~-~~~~~~~~~l~~~g~iv~~g  137 (220)
                      -.+...... ..||.||--...+ ..+..+.+.|++||+++.+-
T Consensus       169 i~~~~~~~~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         169 ISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             TTCCC-------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             hhhcccccCCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence            111111111 2688887444443 46888999999999998763

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=0.00014  Score=49.74  Aligned_cols=37  Identities=27%  Similarity=0.285  Sum_probs=33.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      ...++|+|+|+|+.|+.++..+...|.+|+++.+.+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            4568999999999999999999999999999998753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=5.9e-05  Score=53.93  Aligned_cols=99  Identities=19%  Similarity=0.062  Sum_probs=65.7

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe----------------------cCCC
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL----------------------VSRD   96 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~----------------------~~~~   96 (220)
                      ...++.+||..|||. |..+..+++ .|++|+.++-++...+.+.++.+.....                      ..+.
T Consensus        42 ~~~~~~rvLd~GCG~-G~~a~~LA~-~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~  119 (229)
T d2bzga1          42 KGKSGLRVFFPLCGK-AVEMKWFAD-RGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI  119 (229)
T ss_dssp             TTCCSCEEEETTCTT-CTHHHHHHH-TTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred             CCCCCCEEEEeCCCC-cHHHHHHHh-CCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence            357889999999985 777777765 7999999999998887776665532211                      0000


Q ss_pred             HHHHHHhcCCccEEEEcCCCcc--------cHHHHHhccccCCEEEEecCC
Q 027668           97 QDEMQAAMGTMDGIIDTVSAVH--------PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus        97 ~~~~~~~~~~~d~vid~~g~~~--------~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      .+......+.+|+|+++.....        .+....+.|+|||++++....
T Consensus       120 ~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~  170 (229)
T d2bzga1         120 FDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLS  170 (229)
T ss_dssp             GGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEE
T ss_pred             hhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcc
Confidence            0111111236899998764421        245678899999998776543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.66  E-value=0.00015  Score=52.50  Aligned_cols=95  Identities=23%  Similarity=0.296  Sum_probs=62.3

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCc-EEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD-SFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      .+||++||=+|+|+ |..++.++ ..|++|+.++.+++..+.+.+   ..|.. .++.. +.+.. ...+.||+|+-...
T Consensus       118 ~~~g~~VLDiGcGs-G~l~i~aa-~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~-d~~~~-~~~~~fD~V~ani~  193 (254)
T d2nxca1         118 LRPGDKVLDLGTGS-GVLAIAAE-KLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEG-SLEAA-LPFGPFDLLVANLY  193 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHH-HTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEES-CHHHH-GGGCCEEEEEEECC
T ss_pred             cCccCEEEEcccch-hHHHHHHH-hcCCEEEEEECChHHHHHHHHHHHHcCCceeEEec-ccccc-ccccccchhhhccc
Confidence            58999999999874 66666555 478999999999987666543   33442 23322 22111 11248999986543


Q ss_pred             Ccc---cHHHHHhccccCCEEEEecC
Q 027668          116 AVH---PLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       116 ~~~---~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ...   .+....+.|+|||++++.|.
T Consensus       194 ~~~l~~l~~~~~~~LkpGG~lilSgi  219 (254)
T d2nxca1         194 AELHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccHHHHHHHHHHhcCCCcEEEEEec
Confidence            321   23456778999999998654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=2.3e-05  Score=57.97  Aligned_cols=99  Identities=18%  Similarity=0.158  Sum_probs=65.0

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCC-cE-EecCCCHHHHHHhcCCcc
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGA-DS-FLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~-~~-v~~~~~~~~~~~~~~~~d  108 (220)
                      +++. .++||++||=+|||- |..++.+++..|++|+.++.+++..+.+.+   +.|. +. .+...+.   .++.+.||
T Consensus        55 ~~~l-~l~~G~~VLDiGCG~-G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~---~~~~~~fD  129 (285)
T d1kpga_          55 LGKL-GLQPGMTLLDVGCGW-GATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---EQFDEPVD  129 (285)
T ss_dssp             HTTT-TCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---GGCCCCCS
T ss_pred             HHHc-CCCCCCEEEEecCcc-hHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh---hccccccc
Confidence            3444 489999999999974 777888999999999999999886555433   3332 11 1222221   12234788


Q ss_pred             EEEE-----cCCCc---ccHHHHHhccccCCEEEEec
Q 027668          109 GIID-----TVSAV---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       109 ~vid-----~~g~~---~~~~~~~~~l~~~g~iv~~g  137 (220)
                      .|+.     .+|..   ..++.+.+.|+|||++++-.
T Consensus       130 ~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~  166 (285)
T d1kpga_         130 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  166 (285)
T ss_dssp             EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             ceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEE
Confidence            7753     33332   13556778999999998643

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.00023  Score=51.35  Aligned_cols=48  Identities=19%  Similarity=0.326  Sum_probs=43.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD   89 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~   89 (220)
                      +|+.+||.|+ +++|.++++.+...|++|+++++++++.+.+.++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Confidence            6899999997 89999999999999999999999999998888888753

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.58  E-value=0.00014  Score=52.55  Aligned_cols=74  Identities=15%  Similarity=0.103  Sum_probs=53.5

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcCCc---EEecCCCHHHHHHh-------cC--Cc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGAD---SFLVSRDQDEMQAA-------MG--TM  107 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g~~---~v~~~~~~~~~~~~-------~~--~~  107 (220)
                      .++|||.|+ +++|.++++.+...|+  +|+.++++.++.+++.+..+..   ...|-.+.+.++++       .+  +.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            378999997 8999999998888886  6888899998888875544432   22344554433322       12  59


Q ss_pred             cEEEEcCCC
Q 027668          108 DGIIDTVSA  116 (220)
Q Consensus       108 d~vid~~g~  116 (220)
                      |++|+++|.
T Consensus        83 dilinnAG~   91 (250)
T d1yo6a1          83 SLLINNAGV   91 (250)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999999985

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.57  E-value=5.7e-05  Score=55.75  Aligned_cols=94  Identities=14%  Similarity=0.231  Sum_probs=62.2

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCc--EEecCCCHHHHHHhcCCccEEEEc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      .++||++||=+|+|. |-.+..+++..|++|+.++.+++..+.+.+   +.|..  ..+...+.   .+..+.||.|+-.
T Consensus        49 ~l~~g~~VLDiGCG~-G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~---~~~~~~fD~i~si  124 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGW-GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---EDFAEPVDRIVSI  124 (280)
T ss_dssp             CCCTTCEEEEESCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---GGCCCCCSEEEEE
T ss_pred             CCCCCCEEEEecCCc-hHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhh---hhhccchhhhhHh
Confidence            489999999999874 445677888889999999999886655433   33421  11111121   1233578988642


Q ss_pred             -----CCCc---ccHHHHHhccccCCEEEEe
Q 027668          114 -----VSAV---HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       114 -----~g~~---~~~~~~~~~l~~~g~iv~~  136 (220)
                           ++..   ..++.+.+.|+|+|++++-
T Consensus       125 ~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         125 EAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             SCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence                 3322   1356678899999999874

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=97.55  E-value=0.0012  Score=44.43  Aligned_cols=97  Identities=19%  Similarity=0.291  Sum_probs=62.1

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHH--HcC-------CcE-------Ee--------cCCCHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVE--RLG-------ADS-------FL--------VSRDQDE   99 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~--~~g-------~~~-------v~--------~~~~~~~   99 (220)
                      +|.|.|-|.+|+++.+.+.... .+++++.......+.++.  ++.       .+.       ++        +..+++.
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p~~   82 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSK   82 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCChhh
Confidence            5789999999999999777654 588777664322222222  221       110       11        1112223


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC
Q 027668          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       100 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      +.+..-++|+|+||+|.......+..++..|.+-|++..+..
T Consensus        83 i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~  124 (169)
T d1u8fo1          83 IKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSA  124 (169)
T ss_dssp             CCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCS
T ss_pred             CCccccCCCEEEEecceeccHHHHHHHHhcCCceEeeccccc
Confidence            322223899999999998777788888999988888876653

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.54  E-value=0.0002  Score=49.97  Aligned_cols=109  Identities=19%  Similarity=0.176  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      -.|.+|+|.|.|.+|..+++.+...|++|++.+.+.++.... ..+|.+.+ ...   .  -+.-..|+.+-|+.....-
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~-~~~g~~~~-~~~---~--~~~~~~DI~iPcA~~~~I~   97 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA-VALGHTAV-ALE---D--VLSTPCDVFAPCAMGGVIT   97 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEEC-CGG---G--GGGCCCSEEEECSCSCCBC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH-Hhhccccc-Ccc---c--cccccceeeeccccccccc
Confidence            378999999999999999999999999999999888776666 56776543 111   1  1223789999887665444


Q ss_pred             HHHHhccccCCEEEEecCCCCCcccC-cc-ccccCCcEEEE
Q 027668          121 MPLIGLLKSQGKLVLLGAPEKPLELP-AF-PLLTGEKIVGG  159 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~~~~~~~~~-~~-~~~~~~~~i~~  159 (220)
                      ....+.++  .+++ ++.-+.+.+.+ .. .+..+++.+.+
T Consensus        98 ~~~a~~i~--ak~i-~e~AN~p~~~~~~~~~L~~rgI~~iP  135 (201)
T d1c1da1          98 TEVARTLD--CSVV-AGAANNVIADEAASDILHARGILYAP  135 (201)
T ss_dssp             HHHHHHCC--CSEE-CCSCTTCBCSHHHHHHHHHTTCEECC
T ss_pred             HHHHhhhh--hhee-eccCCCCcchhhHHHHhcccceEEEe
Confidence            45555554  3443 34434333322 11 23556666554

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=97.54  E-value=0.00087  Score=44.20  Aligned_cols=93  Identities=15%  Similarity=0.268  Sum_probs=64.4

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHC--CCeEEEEeCCc--ccHHHHHHHcCCcEEecCCCH--HHH----------------
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAM--GVKVTVISTSP--SKKSEAVERLGADSFLVSRDQ--DEM----------------  100 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~--g~~v~~~~~~~--~~~~~~~~~~g~~~v~~~~~~--~~~----------------  100 (220)
                      ++|.|+|+ |++|..+..+.+..  ..+|+..+...  +.+.+.+++|....++-.++.  +.+                
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~~   82 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGAD   82 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESHH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCcc
Confidence            68999998 99999999999876  35766555443  345566678887766544321  111                


Q ss_pred             --HHhc-CCccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668          101 --QAAM-GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       101 --~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                        .+.. ..+|+++.+..+...+.-.+..++.+-++.+.
T Consensus        83 ~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaLA  121 (150)
T d1r0ka2          83 ALVEAAMMGADWTMAAIIGCAGLKATLAAIRKGKTVALA  121 (150)
T ss_dssp             HHHHHHTSCCSEEEECCCSGGGHHHHHHHHHTTSEEEEC
T ss_pred             chheecccccceeeeecCchhHHHHHHHHHhcCCEEEEe
Confidence              1111 26899999976666788888888888776654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=97.52  E-value=0.00013  Score=53.81  Aligned_cols=103  Identities=17%  Similarity=0.200  Sum_probs=66.0

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCc---EEecCCCHHHHHHhcCCc
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~~~~  107 (220)
                      +.....+++|.+||=+|||. |..+..+++..|++|+.++.++...+.+.+   ..|..   .+.. .+...+.--.+.|
T Consensus        59 l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~-~d~~~l~~~~~sf  136 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY-GSFLEIPCEDNSY  136 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE-CCTTSCSSCTTCE
T ss_pred             HHHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccc-ccccccccccccc
Confidence            33445689999999999974 777788888889999999999876554432   33321   1222 2211111011369


Q ss_pred             cEEEEcCCCc------ccHHHHHhccccCCEEEEecC
Q 027668          108 DGIIDTVSAV------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       108 d~vid~~g~~------~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      |+|+-.-...      ..+..+.+.|+|||+++....
T Consensus       137 D~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         137 DFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             chhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9997533221      135678889999999987653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00016  Score=45.39  Aligned_cols=67  Identities=19%  Similarity=0.294  Sum_probs=49.5

Q ss_pred             CCC-CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-cEEecCCCHHHHHHhcC--CccEE
Q 027668           41 KPG-MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAMG--TMDGI  110 (220)
Q Consensus        41 ~~~-~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~--~~d~v  110 (220)
                      .|+ .+|.|+|+|.+|+++++-++.+|.++++.+.+++.-  + ..+.. ..+.++.+.+.+.++..  ++|+|
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P--A-~~va~~~i~~~~~d~~~l~~~~~~~~~Dvi   78 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP--A-MHVAHRSHVINMLDGDALRRVVELEKPHYI   78 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG--G-GGGSSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc--h-hhcCCeEEECCCCCHHHHHHHHHhhCCceE
Confidence            444 579999999999999999999999999999876532  2 22333 33446677777766653  67888

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=97.47  E-value=7.4e-05  Score=53.49  Aligned_cols=101  Identities=16%  Similarity=0.196  Sum_probs=64.3

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCc-EEecCCCHHHHHHhc-CCcc
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD-SFLVSRDQDEMQAAM-GTMD  108 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~-~v~~~~~~~~~~~~~-~~~d  108 (220)
                      +-....++||++||=+|||. |..+..+++ .+.+|+.++.++...+.+.+   ..+.+ ..+...+.+.. .+. +.||
T Consensus         8 l~~~~~~~~~~rILDiGcGt-G~~~~~la~-~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~-~~~~~~fD   84 (234)
T d1xxla_           8 MIKTAECRAEHRVLDIGAGA-GHTALAFSP-YVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL-PFPDDSFD   84 (234)
T ss_dssp             HHHHHTCCTTCEEEEESCTT-SHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC-CSCTTCEE
T ss_pred             HHHHhCCCCCCEEEEeCCcC-cHHHHHHHH-hCCeEEEEeCChhhhhhhhhhhcccccccccccccccccc-cccccccc
Confidence            33445589999999999975 777777776 46899999999876555533   23322 11111111111 112 3699


Q ss_pred             EEEEcCCCc------ccHHHHHhccccCCEEEEec
Q 027668          109 GIIDTVSAV------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       109 ~vid~~g~~------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      +|+-+..-.      ..++.+.+.|+|+|+++...
T Consensus        85 ~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          85 IITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            998644332      23667888999999998764

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.47  E-value=1.3e-05  Score=55.19  Aligned_cols=85  Identities=9%  Similarity=0.024  Sum_probs=53.0

Q ss_pred             hhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecC---CCHHHHHHhcCCcc
Q 027668           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVS---RDQDEMQAAMGTMD  108 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~---~~~~~~~~~~~~~d  108 (220)
                      .+|+....--+|++|||+|+|+++.+++..+...| +++++.|+.++.+.+...+........   .+.+........+|
T Consensus         7 ~~l~~~~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   85 (177)
T d1nvta1           7 MALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVD   85 (177)
T ss_dssp             HHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCC
T ss_pred             HHHHHhCCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhh
Confidence            34444333357899999999999998887776555 999999998887777655531100000   00000111123689


Q ss_pred             EEEEcCCCc
Q 027668          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~vid~~g~~  117 (220)
                      ++++|+...
T Consensus        86 liIn~tp~g   94 (177)
T d1nvta1          86 IIINATPIG   94 (177)
T ss_dssp             EEEECSCTT
T ss_pred             hhccCCccc
Confidence            999998654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.47  E-value=0.0011  Score=44.79  Aligned_cols=96  Identities=17%  Similarity=0.184  Sum_probs=64.8

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcc-cHHHHHHHcCCcEEecCCC-HHH-----------HHHhcCCccEE
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS-KKSEAVERLGADSFLVSRD-QDE-----------MQAAMGTMDGI  110 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~-~~~~~~~~~g~~~v~~~~~-~~~-----------~~~~~~~~d~v  110 (220)
                      +|.|.|-|.+|..+.+.+....- +++.+..... .....+.+++.+......+ ...           ..+...++|+|
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDvV   83 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII   83 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCEE
Confidence            68899999999999998876654 7776665332 2223334566554332221 111           11222389999


Q ss_pred             EEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          111 IDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 id~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +||+|.....+.+..+++.|-+.|+.+.+.
T Consensus        84 iEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~  113 (172)
T d2czca2          84 VDATPGGIGAKNKPLYEKAGVKAIFQGGEK  113 (172)
T ss_dssp             EECCSTTHHHHHHHHHHHHTCEEEECTTSC
T ss_pred             EECCCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            999999866777888899999999988764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=0.00019  Score=53.11  Aligned_cols=99  Identities=15%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHH---HHHcCCc-E-EecCCCHHHHHHhcCCcc
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA---VERLGAD-S-FLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~---~~~~g~~-~-v~~~~~~~~~~~~~~~~d  108 (220)
                      +++. .+++|++||=+|||- |-.+..+++..|++|+.++.+++..+.+   .++.|.. . .+...+..   ...+.||
T Consensus        54 ~~~l-~l~~G~~VLDiGCG~-G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~---~~~~~fD  128 (291)
T d1kpia_          54 LDKL-NLEPGMTLLDIGCGW-GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE---EFDEPVD  128 (291)
T ss_dssp             HHTT-CCCTTCEEEEETCTT-SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG---GCCCCCS
T ss_pred             HHhc-CCCCCCEEEEecCcc-hHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc---ccccccc
Confidence            3444 489999999999874 5567788899999999999998754333   2344532 1 11122211   2234799


Q ss_pred             EEEE-----cCCCc----------ccHHHHHhccccCCEEEEec
Q 027668          109 GIID-----TVSAV----------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       109 ~vid-----~~g~~----------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      .|+.     .++..          ..++.+.+.|+|||++++-.
T Consensus       129 ~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         129 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             EEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             eEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            8864     23321          23667889999999998654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.46  E-value=0.00026  Score=49.06  Aligned_cols=118  Identities=19%  Similarity=0.230  Sum_probs=77.1

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc-cc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV-HP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~~  119 (220)
                      -.|+++.|+|.|.+|..+++.++.+|++|+..++.......  ...+...+   .+   +.++....|+|+-+.... .+
T Consensus        47 L~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~--~~~~~~~~---~~---l~~ll~~sD~i~~~~plt~~T  118 (193)
T d1mx3a1          47 IRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE--RALGLQRV---ST---LQDLLFHSDCVTLHCGLNEHN  118 (193)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH--HHHTCEEC---SS---HHHHHHHCSEEEECCCCCTTC
T ss_pred             eeCceEEEeccccccccceeeeeccccceeeccCcccccch--hhhccccc---cc---hhhccccCCEEEEeecccccc
Confidence            36789999999999999999999999999999887543222  23344322   12   223333578887766432 21


Q ss_pred             ---H-HHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecc
Q 027668          120 ---L-MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPAD  190 (220)
Q Consensus       120 ---~-~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~  190 (220)
                         + ...+..|+++..++.++...-                        -+-..+++.+.+|.+.... +++.-|
T Consensus       119 ~~li~~~~l~~mk~~a~lIN~sRG~i------------------------vde~aL~~aL~~~~i~~a~lDV~~~E  170 (193)
T d1mx3a1         119 HHLINDFTVKQMRQGAFLVNTARGGL------------------------VDEKALAQALKEGRIRGAALDVHESE  170 (193)
T ss_dssp             TTSBSHHHHTTSCTTEEEEECSCTTS------------------------BCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred             hhhhhHHHHhccCCCCeEEecCCceE------------------------EcHHHHHHHHHcCCceEEEEEcCCCC
Confidence               2 346778888888888765331                        1244667777788776443 555443

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.46  E-value=0.00022  Score=49.61  Aligned_cols=115  Identities=21%  Similarity=0.199  Sum_probs=75.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|.+|.|+|.|.+|..++++++.+|++|++.++.......   ..+..    ..+   +.++....|+++.++....   
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~---~~~~~----~~~---l~~~l~~sDii~~~~plt~~T~  111 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE---KKGYY----VDS---LDDLYKQADVISLHVPDVPANV  111 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH---HTTCB----CSC---HHHHHHHCSEEEECSCCCGGGT
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCcccccccc---cceee----ecc---ccccccccccccccCCcccccc
Confidence            5789999999999999999999999999999876543221   11221    112   3333345799988775432   


Q ss_pred             -cH-HHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecc
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPAD  190 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~  190 (220)
                       .+ ...++.|+++..+|.++...-                        -+-..+++++.+|.+.... ++|+-|
T Consensus       112 ~li~~~~l~~mk~~a~lIN~sRG~i------------------------vde~aL~~aL~~~~i~~a~lDV~~~E  162 (197)
T d1j4aa1         112 HMINDESIAKMKQDVVIVNVSRGPL------------------------VDTDAVIRGLDSGKIFGYAMDVYEGE  162 (197)
T ss_dssp             TCBSHHHHHHSCTTEEEEECSCGGG------------------------BCHHHHHHHHHHTSEEEEEESCCTTC
T ss_pred             ccccHHHHhhhCCccEEEecCchhh------------------------hhhHHHHHHHhcccchheeeeccccC
Confidence             12 356778888888888755321                        1244667777788776443 666443

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.45  E-value=0.00029  Score=47.27  Aligned_cols=88  Identities=23%  Similarity=0.260  Sum_probs=61.9

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH-
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL-  123 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~-  123 (220)
                      +|-|+|.|.+|...++-+...|.+|++.++++++.+.+ .+.+....  . .   ..+.....|++|-|+..+...+.. 
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~-~~~~~~~~--~-~---~~e~~~~~d~ii~~v~~~~~v~~v~   74 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADV-IAAGAETA--S-T---AKAIAEQCDVIITMLPNSPHVKEVA   74 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEEC--S-S---HHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHH-HHhhhhhc--c-c---HHHHHhCCCeEEEEcCCHHHHHHHH
Confidence            47789999999999998888999999999999888777 45565422  1 1   122233589999999876544443 


Q ss_pred             ------HhccccCCEEEEecCC
Q 027668          124 ------IGLLKSQGKLVLLGAP  139 (220)
Q Consensus       124 ------~~~l~~~g~iv~~g~~  139 (220)
                            ...++++..++.++..
T Consensus        75 ~~~~~~~~~~~~g~iiid~sT~   96 (161)
T d1vpda2          75 LGENGIIEGAKPGTVLIDMSSI   96 (161)
T ss_dssp             HSTTCHHHHCCTTCEEEECSCC
T ss_pred             hCCcchhhccCCCCEEEECCCC
Confidence                  3345566666666553

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.45  E-value=0.00016  Score=50.81  Aligned_cols=98  Identities=13%  Similarity=0.118  Sum_probs=63.2

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH---HcCC-cEEec-CCCHHHHHHhcCCccEEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE---RLGA-DSFLV-SRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~---~~g~-~~v~~-~~~~~~~~~~~~~~d~vid  112 (220)
                      .++||++||=+|||+ |..+..+++..+. +|+.++-+++..+.+.+   ..+. ..+.. ..+..........+|+++.
T Consensus        53 ~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~  131 (209)
T d1nt2a_          53 KLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQ  131 (209)
T ss_dssp             CCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEe
Confidence            389999999999875 6777778887764 89999999887665533   2332 22222 1222222222236788876


Q ss_pred             cCCCcc----cHHHHHhccccCCEEEEec
Q 027668          113 TVSAVH----PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g~~~----~~~~~~~~l~~~g~iv~~g  137 (220)
                      ......    .+..+.+.|+++|.+++..
T Consensus       132 ~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         132 DIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             CCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            544332    2455678899999998763

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.00023  Score=52.52  Aligned_cols=96  Identities=19%  Similarity=0.174  Sum_probs=58.9

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEE---eCCccc---HHHHHHHcC---Cc---EEecCCCHHHHHHhc-----CC
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVI---STSPSK---KSEAVERLG---AD---SFLVSRDQDEMQAAM-----GT  106 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~---~~~~~~---~~~~~~~~g---~~---~v~~~~~~~~~~~~~-----~~  106 (220)
                      .|||.|+ +++|.++++.+...|++++.+   .++.+.   ..+..+++.   ..   ...|-.+.+.+.+..     +.
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g~   83 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEGR   83 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTSC
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccccc
Confidence            4566787 899999999999999875544   443332   333334432   22   223555655554332     37


Q ss_pred             ccEEEEcCCCcc-------------------------cHHHHHhccc--cCCEEEEecCCC
Q 027668          107 MDGIIDTVSAVH-------------------------PLMPLIGLLK--SQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~vid~~g~~~-------------------------~~~~~~~~l~--~~g~iv~~g~~~  140 (220)
                      .|++++++|...                         ..+.++..|+  .+|+++.+++..
T Consensus        84 idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~  144 (285)
T d1jtva_          84 VDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVG  144 (285)
T ss_dssp             CSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGG
T ss_pred             hhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechh
Confidence            999999987742                         1234455553  469999887653

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.42  E-value=0.00068  Score=45.77  Aligned_cols=90  Identities=21%  Similarity=0.143  Sum_probs=58.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcCC-cEEecCCCHHHHHHhcCCccEEEEcCCCccc-
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGA-DSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP-  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~-  119 (220)
                      ++|+|+|+|.+|...+..++..|.  +|++.+++++..+.+ ++.+. +......+..    .....|+||-|+..... 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a-~~~~~~~~~~~~~~~~----~~~~~dlIila~p~~~~~   76 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA-VDLGIIDEGTTSIAKV----EDFSPDFVMLSSPVRTFR   76 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH-HHTTSCSEEESCGGGG----GGTCCSEEEECSCHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH-HHhhcchhhhhhhhhh----hccccccccccCCchhhh
Confidence            369999999999999999999885  899999998887777 45664 4443322111    11256777777765422 


Q ss_pred             --HHHHHhccccCCEEEEecC
Q 027668          120 --LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 --~~~~~~~l~~~g~iv~~g~  138 (220)
                        +....+.++++..++.++.
T Consensus        77 ~vl~~l~~~~~~~~ii~d~~s   97 (171)
T d2g5ca2          77 EIAKKLSYILSEDATVTDQGS   97 (171)
T ss_dssp             HHHHHHHHHSCTTCEEEECCS
T ss_pred             hhhhhhhcccccccccccccc
Confidence              2233344555555555554

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.42  E-value=0.00085  Score=46.03  Aligned_cols=96  Identities=22%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCC-c--EEecCCCHHHHHHhcCCccEEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGA-D--SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~-~--~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .+++|++||=+|+|. |..++.+++. +.+|+.++.+++..+.+.+   ++|. +  .++. .+..........||.||-
T Consensus        30 ~~~~g~~VLDiGcGs-G~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~-gda~~~~~~~~~~D~v~~  106 (186)
T d1l3ia_          30 EPGKNDVAVDVGCGT-GGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME-GDAPEALCKIPDIDIAVV  106 (186)
T ss_dssp             CCCTTCEEEEESCTT-SHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE-SCHHHHHTTSCCEEEEEE
T ss_pred             CCCCCCEEEEEECCe-Eccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEE-CchhhcccccCCcCEEEE
Confidence            379999999999864 5555566654 5699999999886665543   4553 1  2232 232222222248999986


Q ss_pred             cCCCc---ccHHHHHhccccCCEEEEec
Q 027668          113 TVSAV---HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g~~---~~~~~~~~~l~~~g~iv~~g  137 (220)
                      ..+..   ..++.+.+.|+++|+++...
T Consensus       107 ~~~~~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         107 GGSGGELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             SCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eCccccchHHHHHHHHHhCcCCEEEEEe
Confidence            54432   23566788899999998653

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.42  E-value=0.00044  Score=49.29  Aligned_cols=102  Identities=17%  Similarity=0.132  Sum_probs=63.6

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHHcC---C-cEEe-cCCCHHHHHHhcCCc
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLG---A-DSFL-VSRDQDEMQAAMGTM  107 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~g---~-~~v~-~~~~~~~~~~~~~~~  107 (220)
                      +..+. ++||++||=+|||+ |..+..+++... .+|++++-++...+.+.+...   . ..+. +....+........+
T Consensus        67 l~~l~-ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v  144 (230)
T d1g8sa_          67 LKVMP-IKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV  144 (230)
T ss_dssp             CCCCC-CCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred             HHhCC-CCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCccccccccee
Confidence            44444 79999999999874 777777787643 499999999987776644322   1 2222 222222221222256


Q ss_pred             cEEEEcCCCcc----cHHHHHhccccCCEEEEec
Q 027668          108 DGIIDTVSAVH----PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       108 d~vid~~g~~~----~~~~~~~~l~~~g~iv~~g  137 (220)
                      |+++.......    .+..+.+.|+++|.+++.-
T Consensus       145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            66666554332    2445667899999988753

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.41  E-value=0.00039  Score=47.77  Aligned_cols=117  Identities=20%  Similarity=0.253  Sum_probs=78.2

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc--
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH--  118 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~--  118 (220)
                      -.|.++.|+|.|.+|..++++++.+|++|++.++.......  ...+....    +   ++++....|+|+-++...+  
T Consensus        42 l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~--~~~~~~~~----~---l~ell~~sDiv~~~~Plt~~T  112 (184)
T d1ygya1          42 IFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARA--AQLGIELL----S---LDDLLARADFISVHLPKTPET  112 (184)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHH--HHHTCEEC----C---HHHHHHHCSEEEECCCCSTTT
T ss_pred             ccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHH--hhcCceec----c---HHHHHhhCCEEEEcCCCCchh
Confidence            35789999999999999999999999999999877543322  23444321    2   2333345789987765432  


Q ss_pred             --cH-HHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCccee-EEEEecc
Q 027668          119 --PL-MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRAD-IEVIPAD  190 (220)
Q Consensus       119 --~~-~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~  190 (220)
                        .+ ...+..|+++..++.++...-                        -+-+.+++++.+|.+.-. .++|.-|
T Consensus       113 ~~lin~~~l~~mk~~a~lIN~sRG~i------------------------Vde~aL~~aL~~~~i~~a~lDV~~~E  164 (184)
T d1ygya1         113 AGLIDKEALAKTKPGVIIVNAARGGL------------------------VDEAALADAITGGHVRAAGLDVFATE  164 (184)
T ss_dssp             TTCBCHHHHTTSCTTEEEEECSCTTS------------------------BCHHHHHHHHHTSSEEEEEESSCSSS
T ss_pred             hhhhhHHHHhhhCCCceEEEecchhh------------------------hhhHHHHHHHhcCcEeEEEEeCCCCC
Confidence              22 357788888888888766331                        124466777778877644 3555433

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.40  E-value=0.00014  Score=51.40  Aligned_cols=94  Identities=22%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCc-EEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD-SFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      ++++.+||-+|||+ |..+..+++ .|.+|+.++.+++..+.+.+   ..+.. ..+.. +...+....+.||+|+-...
T Consensus        35 l~~~~~ILDiGcG~-G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~-d~~~l~~~~~~fD~I~~~~~  111 (226)
T d1ve3a1          35 MKKRGKVLDLACGV-GGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVG-DARKLSFEDKTFDYVIFIDS  111 (226)
T ss_dssp             CCSCCEEEEETCTT-SHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEEC-CTTSCCSCTTCEEEEEEESC
T ss_pred             cCCCCEEEEECCCc-chhhhhHhh-hhcccccccccccchhhhhhhhcccccccccccc-ccccccccCcCceEEEEecc
Confidence            57889999999985 777777776 58899999999887655533   22321 12221 11111111137999885433


Q ss_pred             Cc-----c---cHHHHHhccccCCEEEEe
Q 027668          116 AV-----H---PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       116 ~~-----~---~~~~~~~~l~~~g~iv~~  136 (220)
                      -.     +   .++.+.+.|+|||++++.
T Consensus       112 l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         112 IVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             GGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            22     1   355678889999998764

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=0.00032  Score=50.89  Aligned_cols=75  Identities=16%  Similarity=0.065  Sum_probs=49.9

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHH---HCCCeEEEEeCCcccHHHHHHHcC-----Cc---EEecCCCHHHHHHh------
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAK---AMGVKVTVISTSPSKKSEAVERLG-----AD---SFLVSRDQDEMQAA------  103 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~---~~g~~v~~~~~~~~~~~~~~~~~g-----~~---~v~~~~~~~~~~~~------  103 (220)
                      .|+.++|.|+ +++|.++++.+.   ..|++|+++++++++.+++.+++.     ..   ...|-.+.+.++++      
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            4677788897 899999887554   369999999999988877765542     21   12244555443322      


Q ss_pred             -c----CCccEEEEcCCC
Q 027668          104 -M----GTMDGIIDTVSA  116 (220)
Q Consensus       104 -~----~~~d~vid~~g~  116 (220)
                       .    ...|++++++|.
T Consensus        85 ~~~~~~~~~~~lvnnag~  102 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAAT  102 (259)
T ss_dssp             SCCCTTCCEEEEEECCCC
T ss_pred             hhhhccCceEEEEecccc
Confidence             1    156788887764

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.39  E-value=0.0005  Score=47.04  Aligned_cols=109  Identities=18%  Similarity=0.276  Sum_probs=75.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .|++|.|+|.|.+|..++++++.+|++|++.++.....       ... ..     +.++++....|+|+.++...+   
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~-------~~~-~~-----~~l~ell~~sDiv~~~~pl~~~t~  107 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG-------PWR-FT-----NSLEEALREARAAVCALPLNKHTR  107 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS-------SSC-CB-----SCSHHHHTTCSEEEECCCCSTTTT
T ss_pred             cCceEEEeccccccccceeeeecccccccccccccccc-------cee-ee-----echhhhhhccchhhcccccccccc
Confidence            57899999999999999999999999999998765321       111 11     123445567899998775432   


Q ss_pred             -cH-HHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEE
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVI  187 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~  187 (220)
                       .+ ...++.|+++..++.++...-                        -+-+.+++.+.++.+.... +++
T Consensus       108 ~li~~~~l~~mk~~ailIN~~RG~i------------------------vd~~aL~~aL~~~~i~~aalDV~  155 (181)
T d1qp8a1         108 GLVKYQHLALMAEDAVFVNVGRAEV------------------------LDRDGVLRILKERPQFIFASDVW  155 (181)
T ss_dssp             TCBCHHHHTTSCTTCEEEECSCGGG------------------------BCHHHHHHHHHHCTTCEEEESCC
T ss_pred             cccccceeeeccccceEEecccccc------------------------ccchhhhhhcccCcEEEEEEecC
Confidence             12 457888999999988764220                        1245677777788776443 555

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.0005  Score=49.72  Aligned_cols=77  Identities=14%  Similarity=0.255  Sum_probs=50.6

Q ss_pred             CCCCEEEEEcC-c--hHHHHHHHHHHHCCCeEEEEeCCcccHHHH---HHHcCCcEEe--cCCCHHHHH----Hh---cC
Q 027668           41 KPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSKKSEA---VERLGADSFL--VSRDQDEMQ----AA---MG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g--~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~---~~~~g~~~v~--~~~~~~~~~----~~---~~  105 (220)
                      -.|+++||.|+ |  ++|.+++..+...|++|+++.++++..+.+   .+..+....+  +..+.....    +.   .+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            46899999986 5  689999999999999999999986643333   2333432222  222322222    11   23


Q ss_pred             CccEEEEcCCCc
Q 027668          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~vid~~g~~  117 (220)
                      ..|+.+++++..
T Consensus        83 ~~d~~v~~a~~~   94 (258)
T d1qsga_          83 KFDGFVHSIGFA   94 (258)
T ss_dssp             SEEEEEECCCCC
T ss_pred             ccceEEEeeccc
Confidence            789999987663

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.37  E-value=0.001  Score=45.30  Aligned_cols=94  Identities=16%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccH-HHHHHHcCCcEEecCCCHHHH-----------HHhcCCccEEE
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKK-SEAVERLGADSFLVSRDQDEM-----------QAAMGTMDGII  111 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~-~~~~~~~g~~~v~~~~~~~~~-----------~~~~~~~d~vi  111 (220)
                      +|.|.|.|.+|+.+.+.+....- +++.+....... .......+............+           .+...++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            57899999999999999987754 888876654332 222233443322222211111           11112689999


Q ss_pred             EcCCCcccHHHHHhccccCCEEEEecC
Q 027668          112 DTVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       112 d~~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ||+|.....+.+-.+++.+-+.+..+.
T Consensus        83 ecTG~f~~~e~a~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          83 DTTPNGVGAQYKPIYLQLQRNAIFQGG  109 (178)
T ss_dssp             ECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             ECCCCcCCHHHHHHHHHcCCEEEEECC
Confidence            999987556667777777767776544

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=97.34  E-value=0.0021  Score=43.34  Aligned_cols=96  Identities=16%  Similarity=0.146  Sum_probs=62.1

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccH-HHHHHHcCCcEEecCCCHH-HH-----------HHhcCCccEE
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKK-SEAVERLGADSFLVSRDQD-EM-----------QAAMGTMDGI  110 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~-~~~~~~~g~~~v~~~~~~~-~~-----------~~~~~~~d~v  110 (220)
                      +|.|.|-|.+|..+.+.+...+- +++.+....... .....+++.+......+.. ..           .++..++|+|
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDvV   82 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV   82 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCEE
Confidence            68899999999999998887765 777666543321 1222355654332222211 11           1122379999


Q ss_pred             EEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          111 IDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 id~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +||+|.-.....+...++.|-+.+..+...
T Consensus        83 iEcTG~f~~~~~~~~hl~~G~K~vi~~~~~  112 (171)
T d1cf2o1          83 IDCTPEGIGAKNLKMYKEKGIKAIFQGGEK  112 (171)
T ss_dssp             EECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             EEccCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            999999765667778888888877766543

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=9.7e-05  Score=52.98  Aligned_cols=93  Identities=17%  Similarity=0.240  Sum_probs=62.8

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCC---
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA---  116 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~---  116 (220)
                      .+++.+||=+||| .|..+..+++ .|++|+.++.+++..+.+.+ -+....+.....+ +....+.||+|+.....   
T Consensus        40 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~giD~s~~~l~~a~~-~~~~~~~~~~~~~-l~~~~~~fD~ii~~~~~~~~  115 (246)
T d2avna1          40 LKNPCRVLDLGGG-TGKWSLFLQE-RGFEVVLVDPSKEMLEVARE-KGVKNVVEAKAED-LPFPSGAFEAVLALGDVLSY  115 (246)
T ss_dssp             CCSCCEEEEETCT-TCHHHHHHHT-TTCEEEEEESCHHHHHHHHH-HTCSCEEECCTTS-CCSCTTCEEEEEECSSHHHH
T ss_pred             cCCCCEEEEECCC-Cchhcccccc-cceEEEEeeccccccccccc-ccccccccccccc-cccccccccceeeecchhhh
Confidence            4678899999998 4888888876 58999999999988877744 4443333332211 21112479999864332   


Q ss_pred             ---c-ccHHHHHhccccCCEEEEe
Q 027668          117 ---V-HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       117 ---~-~~~~~~~~~l~~~g~iv~~  136 (220)
                         . ..++.+.+.|++||.++..
T Consensus       116 ~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         116 VENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             hhhHHHHHHHHHhhcCcCcEEEEE
Confidence               1 1355677899999998764

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.32  E-value=0.0008  Score=49.04  Aligned_cols=77  Identities=14%  Similarity=0.161  Sum_probs=52.0

Q ss_pred             CCCCEEEEEcC-c--hHHHHHHHHHHHCCCeEEEEeCCccc---HHHHHHHcCC-c-EEecCCCHHHH-------HHhcC
Q 027668           41 KPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSK---KSEAVERLGA-D-SFLVSRDQDEM-------QAAMG  105 (220)
Q Consensus        41 ~~~~~vlI~G~-g--~~G~~~~~~~~~~g~~v~~~~~~~~~---~~~~~~~~g~-~-~v~~~~~~~~~-------~~~~~  105 (220)
                      -+|+++||.|+ |  ++|.++++.+...|++|++++++++.   .+++..+.+. . ...+..+.+.+       .+..+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            46899999996 5  69999999999999999999998642   2233233332 2 22333343322       23335


Q ss_pred             CccEEEEcCCCc
Q 027668          106 TMDGIIDTVSAV  117 (220)
Q Consensus       106 ~~d~vid~~g~~  117 (220)
                      .+|+++.++|..
T Consensus        83 ~id~lV~nag~~   94 (274)
T d2pd4a1          83 SLDFIVHSVAFA   94 (274)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CCCeEEeecccc
Confidence            899999988864

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.32  E-value=0.00052  Score=48.55  Aligned_cols=72  Identities=26%  Similarity=0.216  Sum_probs=51.7

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .+|||.|+ |.+|..+++.+...|.  .|+...+++++...+  .-+.+.+ .|..+.+...+...++|.||.+++..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~   79 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI--GGEADVFIGDITDADSINPAFQGIDALVILTSAV   79 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc--cCCcEEEEeeeccccccccccccceeeEEEEeec
Confidence            58999997 9999999999999886  466666776544333  1234433 35556677777778999999988753

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.29  E-value=0.00088  Score=47.47  Aligned_cols=81  Identities=28%  Similarity=0.271  Sum_probs=59.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcC-CccEEEEcCCCccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMG-TMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~-~~d~vid~~g~~~~  119 (220)
                      -.|.+|+|.|.|.+|..+++++...|+++++++.+..+.+.+....|...+- .   +   ++.. ..|+.+=|+.....
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~-~---~---~~~~~~cDIl~PcA~~~~I  109 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVA-P---N---AIYGVTCDIFAPCALGAVL  109 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECC-G---G---GTTTCCCSEEEECSCSCCB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccC-C---c---ccccccccEeccccccccc
Confidence            4689999999999999999999999999999999988888887777766431 1   1   1222 67888877765533


Q ss_pred             HHHHHhccc
Q 027668          120 LMPLIGLLK  128 (220)
Q Consensus       120 ~~~~~~~l~  128 (220)
                      -......++
T Consensus       110 ~~~~~~~l~  118 (230)
T d1leha1         110 NDFTIPQLK  118 (230)
T ss_dssp             STTHHHHCC
T ss_pred             ChHHhhccC
Confidence            334444454

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.29  E-value=0.001  Score=45.69  Aligned_cols=39  Identities=13%  Similarity=0.168  Sum_probs=34.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA   82 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~   82 (220)
                      ++|.|+|+|.+|...+.++...|++|++.+.+++..+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhh
Confidence            568999999999999999999999999999998865554

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=97.28  E-value=0.0053  Score=41.15  Aligned_cols=95  Identities=19%  Similarity=0.328  Sum_probs=64.4

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH--HcCC-------c---------------EEecCCCHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE--RLGA-------D---------------SFLVSRDQDEM  100 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~--~~g~-------~---------------~v~~~~~~~~~  100 (220)
                      +|.|.|-|-+|+.+.+.+...+.+++++.... ..+.++.  ++..       .               .+....+++.+
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i~iv~INd~~-~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~i   80 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGVEVALINDLT-DNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKEI   80 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEECSS-CHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGGC
T ss_pred             EEEEECCcHHHHHHHHHHhcCCCEEEEECCCc-chhhhhheeecccccCccccccccccceeEecceeEEEEecCChHHC
Confidence            57899999999999999888889888877764 3333322  2221       1               11112222333


Q ss_pred             HHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          101 QAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       101 ~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+...++|+|+||+|.....+.+..+++.+.+-|++..+.
T Consensus        81 ~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~  120 (168)
T d2g82a1          81 PWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA  120 (168)
T ss_dssp             CTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             cccccCCceeEeccccccchHHhhhhhccccceeeecccc
Confidence            3333389999999999877788888898887777776664

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.0025  Score=42.56  Aligned_cols=96  Identities=17%  Similarity=0.140  Sum_probs=71.9

Q ss_pred             cccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHH
Q 027668           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~   99 (220)
                      ..++|+....+..|+...---.|++|+|+|. ..+|.-+..++...|+.|+++..........                 
T Consensus        15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~-----------------   77 (166)
T d1b0aa1          15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHH-----------------   77 (166)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHH-----------------
T ss_pred             CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHH-----------------
Confidence            4677777777777776664468999999996 7899999999999999998776654333222                 


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCC
Q 027668          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       100 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                          ....|+++-++|.+..+.  -+.++++..++.+|..
T Consensus        78 ----~~~ADivI~a~G~p~~i~--~~~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          78 ----VENADLLIVAVGKPGFIP--GDWIKEGAIVIDVGIN  111 (166)
T ss_dssp             ----HHHCSEEEECSCCTTCBC--TTTSCTTCEEEECCCE
T ss_pred             ----HhhhhHhhhhccCccccc--ccccCCCcEEEecCce
Confidence                124789999999886543  3467888888888864

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=97.27  E-value=1e-07  Score=65.95  Aligned_cols=57  Identities=18%  Similarity=0.186  Sum_probs=44.5

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhHh-ccCCCCCCEEEEEc-C-chHHHHHHH
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLRF-YGLDKPGMHVGVVG-L-GGLGHVAVK   60 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~vlI~G-~-g~~G~~~~~   60 (220)
                      ++|++.++++|++++.+.+  +.+...|||+++.. ...++||++|||.| + |++|++++|
T Consensus       115 ~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         115 LGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             EEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             eehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            5788999999998764444  45677888988764 45689999999997 4 679987765

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=97.26  E-value=0.0002  Score=50.85  Aligned_cols=97  Identities=22%  Similarity=0.186  Sum_probs=62.5

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCc--EEecCCCHHHHHHhcCCccEEEE
Q 027668           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      ..++++++||=+||| .|..+..+++ .|++|+.++.+++..+.+.+   ..+..  .++..+. ..+.-..+.||+|+-
T Consensus        11 ~~l~~~~rVLDiGcG-~G~~~~~l~~-~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~-~~l~~~~~~fD~v~~   87 (231)
T d1vl5a_          11 AALKGNEEVLDVATG-GGHVANAFAP-FVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-EQMPFTDERFHIVTC   87 (231)
T ss_dssp             HTCCSCCEEEEETCT-TCHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC--CCCSCTTCEEEEEE
T ss_pred             cCCCCcCEEEEeccc-CcHHHHHHHH-hCCEEEEEECCHHHHhhhhhccccccccccccccccc-ccccccccccccccc
Confidence            448999999999997 4777777665 47899999999876555422   33432  1222221 111101237999986


Q ss_pred             cCCCc------ccHHHHHhccccCCEEEEec
Q 027668          113 TVSAV------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g~~------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      ...-.      ..+..+.+.|+|||++++..
T Consensus        88 ~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          88 RIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             ESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            53321      23667889999999999864

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=0.00083  Score=51.78  Aligned_cols=107  Identities=16%  Similarity=0.098  Sum_probs=70.0

Q ss_pred             hhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH---H-------cC----CcEE-e
Q 027668           29 TVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE---R-------LG----ADSF-L   92 (220)
Q Consensus        29 ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~---~-------~g----~~~v-~   92 (220)
                      ....++.+.. ++||+++|=+|+|. |..+.++|+..|+ +++.++.++...+.+.+   +       +|    .... +
T Consensus       204 ~i~~Il~~l~-Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~  281 (406)
T d1u2za_         204 FLSDVYQQCQ-LKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSL  281 (406)
T ss_dssp             HHHHHHHHTT-CCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEE
T ss_pred             HHHHHHHHhC-CCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeee
Confidence            3455666665 89999999999984 9999999999998 89999999875444422   1       11    1111 1


Q ss_pred             cC--CCHHHHHHhcCCccEEEEc-CCCc----ccHHHHHhccccCCEEEEec
Q 027668           93 VS--RDQDEMQAAMGTMDGIIDT-VSAV----HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus        93 ~~--~~~~~~~~~~~~~d~vid~-~g~~----~~~~~~~~~l~~~g~iv~~g  137 (220)
                      ..  .+.+........+|+++-. .-..    ..+....+.|++||+++...
T Consensus       282 ~~~f~~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~  333 (406)
T d1u2za_         282 KKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK  333 (406)
T ss_dssp             SSCSTTCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             eechhhccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence            11  1224444444578888742 2221    13556778899999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00041  Score=45.93  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      -.|++|||+|+|.+|..-++.+...|++|++++..
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            46799999999999999999999999999998653

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00018  Score=51.31  Aligned_cols=95  Identities=21%  Similarity=0.109  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC---CcEEecCCCHH-HHHHhc-CCccEE-EEcC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---ADSFLVSRDQD-EMQAAM-GTMDGI-IDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g---~~~v~~~~~~~-~~~~~~-~~~d~v-id~~  114 (220)
                      .+|.+||-+|+|. |..+..+++..+.++++++.++...+.+.+.+.   ....+...+.. ....+. +.||.+ ||+.
T Consensus        52 ~~g~~VLdIGcG~-G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~  130 (229)
T d1zx0a1          52 SKGGRVLEVGFGM-AIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY  130 (229)
T ss_dssp             TTCEEEEEECCTT-SHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEeeccc-hHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence            6889999999874 777888888766799999999887777654432   22111122222 222222 378888 4665


Q ss_pred             CCcc----------cHHHHHhccccCCEEEEe
Q 027668          115 SAVH----------PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       115 g~~~----------~~~~~~~~l~~~g~iv~~  136 (220)
                      ....          .+..+.+.|+|||+++..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            4432          234577889999999864

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.23  E-value=0.00062  Score=47.00  Aligned_cols=118  Identities=11%  Similarity=0.152  Sum_probs=77.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc-c--
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV-H--  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~-~--  118 (220)
                      .|.++.|+|.|.+|..++++++..|++++..++........ ...+...   ..+   +.++....|+|..+.... +  
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-~~~~~~~---~~~---l~~ll~~sD~v~l~~plt~~T~  118 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDE-ASYQATF---HDS---LDSLLSVSQFFSLNAPSTPETR  118 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH-HHHTCEE---CSS---HHHHHHHCSEEEECCCCCTTTT
T ss_pred             cccceEEeecccchHHHHHHHHhhccccccccccccccchh-hcccccc---cCC---HHHHHhhCCeEEecCCCCchHh
Confidence            47899999999999999999999999999988765543333 1222221   112   223334578998766442 1  


Q ss_pred             -cH-HHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecc
Q 027668          119 -PL-MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPAD  190 (220)
Q Consensus       119 -~~-~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~  190 (220)
                       .+ ...++.|+++..+|.++...-                        -+-..+++.+.+|.+.-.. ++|.-|
T Consensus       119 ~li~~~~l~~mk~~a~lIN~sRG~i------------------------vde~aL~~aL~~g~i~~a~lDV~~~E  169 (191)
T d1gdha1         119 YFFNKATIKSLPQGAIVVNTARGDL------------------------VDNELVVAALEAGRLAYAGFDVFAGE  169 (191)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSCGGG------------------------BCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred             heecHHHhhCcCCccEEEecCCccc------------------------hhhHHHHHHHHcCCceEEEEECCCCC
Confidence             12 357788888888888765321                        1245677777888877543 666544

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.22  E-value=0.0011  Score=45.69  Aligned_cols=118  Identities=13%  Similarity=0.081  Sum_probs=77.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .+.++.|+|.|.+|..+++.++.+|.+|+..++........ +..+....   .   ...+.....|+|+-+....+   
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-~~~~~~~~---~---~l~~~l~~sD~v~~~~plt~~T~  115 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVE-KELNLTWH---A---TREDMYPVCDVVTLNCPLHPETE  115 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHH-HHHTCEEC---S---SHHHHGGGCSEEEECSCCCTTTT
T ss_pred             cccceeeccccccchhhhhhhhccCceEEEEeecccccccc-cccccccc---C---CHHHHHHhccchhhcccccccch
Confidence            57899999999999999999999999999999865443333 34443321   1   13334456888887664432   


Q ss_pred             -c-HHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecc
Q 027668          119 -P-LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPAD  190 (220)
Q Consensus       119 -~-~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~  190 (220)
                       . -...+..|+++..+|.++...-                        -+-..+++++++|.+.-.. +++.-|
T Consensus       116 ~li~~~~l~~mk~ga~lIN~aRG~i------------------------vd~~aL~~aL~~g~i~ga~lDV~~~E  166 (188)
T d2naca1         116 HMINDETLKLFKRGAYIVNTARGKL------------------------CDRDAVARALESGRLAGYAGDVWFPQ  166 (188)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSCGGG------------------------BCHHHHHHHHHTTSEEEEEESCCSSS
T ss_pred             hhhHHHHHHhCCCCCEEEecCchhh------------------------hhHHHHHHHHhCCCceeEEEeCCCCC
Confidence             1 2357778888888887755321                        1245667777788776433 565443

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=97.21  E-value=0.00086  Score=48.66  Aligned_cols=77  Identities=16%  Similarity=0.296  Sum_probs=53.6

Q ss_pred             CCCCCEEEEEcC-c--hHHHHHHHHHHHCCCeEEEEeCCcccH-HHHHHHcCCc---EEecCCCHH-------HHHHhc-
Q 027668           40 DKPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPSKK-SEAVERLGAD---SFLVSRDQD-------EMQAAM-  104 (220)
Q Consensus        40 ~~~~~~vlI~G~-g--~~G~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~~~g~~---~v~~~~~~~-------~~~~~~-  104 (220)
                      +-.|+++||.|+ |  ++|.++++-+...|++|+++.+++++. +.+.++++..   ...|-.+.+       .+.+.. 
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~   82 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   82 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence            457899999995 4  599999999999999999999988765 3354556632   223344432       222222 


Q ss_pred             --CCccEEEEcCCC
Q 027668          105 --GTMDGIIDTVSA  116 (220)
Q Consensus       105 --~~~d~vid~~g~  116 (220)
                        +..|++++++|.
T Consensus        83 ~~~~ld~~i~~ag~   96 (268)
T d2h7ma1          83 AGNKLDGVVHSIGF   96 (268)
T ss_dssp             TTCCEEEEEECCCC
T ss_pred             cCCCcceeeecccc
Confidence              368999999885

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.00021  Score=51.05  Aligned_cols=76  Identities=20%  Similarity=0.153  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcCCcEE-ecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGADSF-LVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g~~~v-~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      ..+++|||.|+ |-+|..+++.+...|.  +|+++++++.....- ..-..... .|..+.+.+.+...++|++|.|+|.
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~-~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE-AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG-GGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccc-ccceeeeeeecccccccccccccccccccccccc
Confidence            34579999998 9999999998888885  899999876543221 11122222 2333344444555689999999987


Q ss_pred             c
Q 027668          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      .
T Consensus        91 ~   91 (232)
T d2bkaa1          91 T   91 (232)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=7.1e-05  Score=50.52  Aligned_cols=87  Identities=20%  Similarity=0.246  Sum_probs=56.8

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-----cEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-----DSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-----~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      +|+|+|+|.+|.+.+..+...|.+|.++++++++.+.. ...+.     ...+.....+.    .+.+|++|-|+-... 
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~D~iii~vka~~-   75 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSV-NLVETDGSIFNESLTANDPDF----LATSDLLLVTLKAWQ-   75 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEE-EEECTTSCEEEEEEEESCHHH----HHTCSEEEECSCGGG-
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhh-ccccCCccccccccccchhhh----hcccceEEEeecccc-
Confidence            68999999999999999999999999999987654322 11221     11111222222    237999999998864 


Q ss_pred             HHHHHh----ccccCCEEEEec
Q 027668          120 LMPLIG----LLKSQGKLVLLG  137 (220)
Q Consensus       120 ~~~~~~----~l~~~g~iv~~g  137 (220)
                      ...+++    .+.++..++.+.
T Consensus        76 ~~~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          76 VSDAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             HHHHHHHHHTTSCTTSCEEEEC
T ss_pred             hHHHHHhhccccCcccEEeecc
Confidence            444433    445566666653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.16  E-value=0.0021  Score=42.97  Aligned_cols=89  Identities=16%  Similarity=0.168  Sum_probs=60.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      ++|-++|.|.+|...++-+...|.+|.+.++++++.+.+ ...+.....      ...+.....|+++-|+.........
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~-~~~~~~~~~------~~~e~~~~~diii~~v~~~~~~~~v   74 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGL-VAAGASAAR------SARDAVQGADVVISMLPASQHVEGL   74 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHH-HHTTCEECS------SHHHHHTSCSEEEECCSCHHHHHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhh-hhhhccccc------hhhhhccccCeeeecccchhhHHHH
Confidence            368899999999999998888999999999998887766 455654221      1223334678888888776443332


Q ss_pred             -------HhccccCCEEEEecCC
Q 027668          124 -------IGLLKSQGKLVLLGAP  139 (220)
Q Consensus       124 -------~~~l~~~g~iv~~g~~  139 (220)
                             ...++++..++.++..
T Consensus        75 ~~~~~~~~~~l~~g~iiid~st~   97 (162)
T d3cuma2          75 YLDDDGLLAHIAPGTLVLECSTI   97 (162)
T ss_dssp             HHSTTCHHHHSCTTCEEEECSCC
T ss_pred             HhccccccccCCCCCEEEECCCC
Confidence                   2334555556555543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.14  E-value=0.00034  Score=52.82  Aligned_cols=78  Identities=22%  Similarity=0.168  Sum_probs=54.0

Q ss_pred             CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH----cCC--cEEe--cCCCHHHHHHhcCCccEE
Q 027668           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER----LGA--DSFL--VSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~----~g~--~~v~--~~~~~~~~~~~~~~~d~v  110 (220)
                      +++|++|||.|+ |-+|..+++.+...|++|++++++.++...+.+.    ...  ...+  |-.+.+.+.+...++|.+
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v   87 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhh
Confidence            578999999997 9999999998888999999999887654443221    111  1222  223334444455689999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      +.+++..
T Consensus        88 ~~~a~~~   94 (342)
T d1y1pa1          88 AHIASVV   94 (342)
T ss_dssp             EECCCCC
T ss_pred             hhhcccc
Confidence            9877663

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0049  Score=41.32  Aligned_cols=96  Identities=15%  Similarity=0.105  Sum_probs=72.9

Q ss_pred             cccchhhhhhhhhhHhccCCCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHH
Q 027668           21 APLLCAGITVYSPLRFYGLDKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDE   99 (220)
Q Consensus        21 a~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~   99 (220)
                      +.++|+..+.+..|+...---.|++|+|+|. ..+|.-++.++...|+.|+++........+                  
T Consensus        17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~------------------   78 (170)
T d1a4ia1          17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDE------------------   78 (170)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHH------------------
T ss_pred             CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHH------------------
Confidence            5678888888888877664458999999996 789999999999999999987766543322                  


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCC
Q 027668          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       100 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                         .....|+++-++|.+..+.  -+.++++..++.+|..
T Consensus        79 ---~~~~aDivi~a~G~~~~i~--~~~vk~g~iviDvgi~  113 (170)
T d1a4ia1          79 ---EVNKGDILVVATGQPEMVK--GEWIKPGAIVIDCGIN  113 (170)
T ss_dssp             ---HHTTCSEEEECCCCTTCBC--GGGSCTTCEEEECCCB
T ss_pred             ---HHhhccchhhccccccccc--cccccCCCeEeccCcc
Confidence               2236788898998886443  3467888888888764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.09  E-value=0.0033  Score=42.56  Aligned_cols=95  Identities=20%  Similarity=0.235  Sum_probs=64.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc--EEecCCCHHHHHHhcCCccEEEEcCCCcccH-
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD--SFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL-  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~-  120 (220)
                      .+|-++|.|.+|...+.-+...|.+|++.++++++.+.+.++ ++.  ........+...+.....|.++-++...... 
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN-EAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT-TTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh-ccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            458899999999999999999999999999999988887543 321  1111223344445556778888877665332 


Q ss_pred             ---HHHHhccccCCEEEEecCC
Q 027668          121 ---MPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       121 ---~~~~~~l~~~g~iv~~g~~  139 (220)
                         +.....++++..++..+..
T Consensus        82 ~v~~~l~~~~~~g~iiid~sT~  103 (176)
T d2pgda2          82 NFIEKLVPLLDIGDIIIDGGNS  103 (176)
T ss_dssp             HHHHHHHHHCCTTCEEEECSCC
T ss_pred             HHHHHHHhccccCcEEEecCcc
Confidence               3344556666666666543

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.07  E-value=0.001  Score=44.70  Aligned_cols=131  Identities=11%  Similarity=0.111  Sum_probs=79.0

Q ss_pred             EEEEEcCchHHHH-HHHHHHHC-CCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           45 HVGVVGLGGLGHV-AVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        45 ~vlI~G~g~~G~~-~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      +|.|+|+|..|.. .+..++.. +.+++++++++++.+.+.++++...++..-+ +.+ +  ..+|+|+-|+........
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~ll-~--~~iD~V~I~tp~~~H~~~   78 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYR-DVL-Q--YGVDAVMIHAATDVHSTL   78 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTT-GGG-G--GCCSEEEECSCGGGHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHH-Hhc-c--cccceecccccccccccc
Confidence            5789999999965 55666655 4588888888888888888888765543222 222 1  379999999988766777


Q ss_pred             HHhccccCCEEEEecCCCCCcccC---cccc-ccCCcEE-EEeeccCHHHHHHHHHHHHhCCcc
Q 027668          123 LIGLLKSQGKLVLLGAPEKPLELP---AFPL-LTGEKIV-GGSLIGGLKETQEMIDFAAKHNIR  181 (220)
Q Consensus       123 ~~~~l~~~g~iv~~g~~~~~~~~~---~~~~-~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~  181 (220)
                      +..+++.|-. +++.-+-....-.   .... -.++..+ .++. .....+.++.+.+..|.+-
T Consensus        79 ~~~al~~gk~-V~~EKP~~~~~~e~~~l~~~a~~~~~~~~vg~~-r~~~~~~~~~~~~~~G~ig  140 (167)
T d1xeaa1          79 AAFFLHLGIP-TFVDKPLAASAQECENLYELAEKHHQPLYVGFN-GFDAMVQDWLQVAAAGKLP  140 (167)
T ss_dssp             HHHHHHTTCC-EEEESCSCSSHHHHHHHHHHHHHTTCCEEEECG-THHHHHHHHHHHHHHTCCC
T ss_pred             cccccccccc-cccCCCCcCCHHHHHHHHHHHHHcCCEEEEEeC-cCCHHHHHHHHHhhcCCCC
Confidence            8888886644 5554332211001   1111 1223333 3332 2223466677777777765

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.05  E-value=0.0012  Score=49.66  Aligned_cols=76  Identities=21%  Similarity=0.218  Sum_probs=54.4

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc----CCcEEe-cCCCHHHHHHhcC--CccEEEEc
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL----GADSFL-VSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~----g~~~v~-~~~~~~~~~~~~~--~~d~vid~  113 (220)
                      .+++|||.|+ |-+|..+++.+...|.+|+++++...+...+.+..    +.+.+. |-.+.+.+.+...  .+|+++.+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~   86 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   86 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhhh
Confidence            4699999997 99999999999999999999999876433322222    233332 4445666555543  78999998


Q ss_pred             CCCc
Q 027668          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      ++..
T Consensus        87 aa~~   90 (356)
T d1rkxa_          87 AAQP   90 (356)
T ss_dssp             CSCC
T ss_pred             hccc
Confidence            8764

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.01  E-value=0.0021  Score=46.30  Aligned_cols=79  Identities=23%  Similarity=0.336  Sum_probs=54.1

Q ss_pred             CCCCCCEEEEEcC-chHHHHHHHHHHHCCC-eEEEEeCCcc---cHHHHH---HHcCCcEE---ecCCCHHHHHHhc---
Q 027668           39 LDKPGMHVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPS---KKSEAV---ERLGADSF---LVSRDQDEMQAAM---  104 (220)
Q Consensus        39 ~~~~~~~vlI~G~-g~~G~~~~~~~~~~g~-~v~~~~~~~~---~~~~~~---~~~g~~~v---~~~~~~~~~~~~~---  104 (220)
                      .++|+.++||.|+ |++|+++++.+...|+ .++++.++..   ..+++.   +..|....   .|-.+.+.++++.   
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i   84 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI   84 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccc
Confidence            3689999999997 9999999999999999 5777777532   222222   34565322   3555555554432   


Q ss_pred             -C--CccEEEEcCCCc
Q 027668          105 -G--TMDGIIDTVSAV  117 (220)
Q Consensus       105 -~--~~d~vid~~g~~  117 (220)
                       .  +.|.+|.+.|..
T Consensus        85 ~~~~~i~~vv~~ag~~  100 (259)
T d2fr1a1          85 GDDVPLSAVFHAAATL  100 (259)
T ss_dssp             CTTSCEEEEEECCCCC
T ss_pred             cccccccccccccccc
Confidence             2  689999998874

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.01  E-value=0.00097  Score=46.31  Aligned_cols=115  Identities=22%  Similarity=0.254  Sum_probs=75.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc--
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP--  119 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~--  119 (220)
                      .|.+|.|+|.|.+|+.++++++.+|++|++.++......    .....    ..+   +.++....|++.-++...+.  
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~----~~~---l~~l~~~~D~v~~~~plt~~T~  112 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD----HPDFD----YVS---LEDLFKQSDVIDLHVPGIEQNT  112 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC----CTTCE----ECC---HHHHHHHCSEEEECCCCCGGGT
T ss_pred             cceeeeeeecccccccccccccccceeeeccCCccchhh----hcchh----HHH---HHHHHHhcccceeeeccccccc
Confidence            468999999999999999999999999999988654311    11111    112   22333357888876644321  


Q ss_pred             ---HHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEeccc
Q 027668          120 ---LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADY  191 (220)
Q Consensus       120 ---~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~  191 (220)
                         -...+..|+++..++.++...-                        -+-+.+++.+.+|.+.-.. ++++-|.
T Consensus       113 ~li~~~~l~~mk~~a~lIN~aRG~v------------------------vde~aL~~aL~~g~i~ga~lDV~~~EP  164 (199)
T d1dxya1         113 HIINEAAFNLMKPGAIVINTARPNL------------------------IDTQAMLSNLKSGKLAGVGIDTYEYET  164 (199)
T ss_dssp             TSBCHHHHHHSCTTEEEEECSCTTS------------------------BCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred             ccccHHHhhccCCceEEEecccHhh------------------------hhhHHHHHHHhcCCcceEeccccCCCC
Confidence               2357778888888888765321                        1244666777777776543 6665543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.0033  Score=41.43  Aligned_cols=93  Identities=24%  Similarity=0.130  Sum_probs=61.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCcEEe-cCCCHHHHHHhc-CCccEEEEcCCCcc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVH  118 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~  118 (220)
                      ++++|+|.|.+|..+++.+...|.++++++.++++.....++   .|...+. |..+++.+++.. +.+|.++-+++...
T Consensus         4 nHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~   83 (153)
T d1id1a_           4 DHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA   83 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence            679999999999999999999999999999887653333222   3555443 344556655543 48999998888754


Q ss_pred             cHHH---HHhccccCCEEEEe
Q 027668          119 PLMP---LIGLLKSQGKLVLL  136 (220)
Q Consensus       119 ~~~~---~~~~l~~~g~iv~~  136 (220)
                      .-..   ..+.+.+.-+++..
T Consensus        84 ~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          84 DNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHHHHHHHHHHTSSSCEEEE
T ss_pred             HHHHHHHHHHHhCCCCceEEE
Confidence            2111   23334455555543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.00  E-value=0.0048  Score=37.25  Aligned_cols=73  Identities=10%  Similarity=0.220  Sum_probs=51.6

Q ss_pred             CCCCCEEEEEcCchHHHHH-HHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           40 DKPGMHVGVVGLGGLGHVA-VKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~-~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      .+..+++.++|-|++|+.+ +++++..|++|...+.......+...+.|... +...+.+.+    .+.|+|+-+.+-+
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v-~~g~~~~~i----~~~d~vV~S~AI~   78 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKI-YIGHAEEHI----EGASVVVVSSAIK   78 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEE-EESCCGGGG----TTCSEEEECTTSC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeE-EECCccccC----CCCCEEEECCCcC
Confidence            4566889999988888666 89999999999999987554334445778764 333333332    4688888766554

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.99  E-value=0.019  Score=37.53  Aligned_cols=74  Identities=19%  Similarity=0.250  Sum_probs=51.3

Q ss_pred             CEEEEEc-CchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHH----HHHHhcC---CccEEEEcCC
Q 027668           44 MHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQD----EMQAAMG---TMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G-~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~----~~~~~~~---~~d~vid~~g  115 (220)
                      ++|.|+| .|.+|...++.++..|++|.+.++........ ..-+++.++......    .+.+...   .=.+++|+++
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~-~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~iiiD~~S   88 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAES-ILANADVVIVSVPINLTLETIERLKPYLTENMLLADLTS   88 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHH-HHTTCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECCS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccch-hhhhccccccccchhhheeeeecccccccCCceEEEecc
Confidence            6899999 69999999999999999999999987765544 234566665544432    2222222   2247788877


Q ss_pred             Ccc
Q 027668          116 AVH  118 (220)
Q Consensus       116 ~~~  118 (220)
                      ...
T Consensus        89 vk~   91 (152)
T d2pv7a2          89 VKR   91 (152)
T ss_dssp             CCH
T ss_pred             cCH
Confidence            654

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.98  E-value=0.0013  Score=44.22  Aligned_cols=96  Identities=17%  Similarity=0.273  Sum_probs=62.1

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcc---cHHHHHHHcC-------CcE-------E--------ecCCCHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPS---KKSEAVERLG-------ADS-------F--------LVSRDQD   98 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~---~~~~~~~~~g-------~~~-------v--------~~~~~~~   98 (220)
                      +|.|.|-|.+|+++.+.+.... .+++++.....   ....+.+ +.       .+.       +        +..+++.
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlk-yDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p~   80 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLK-YDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDPS   80 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHH-CCTTTCSCSSCEEEETTEEEESSCEEEEECCSSGG
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhh-cccccccceeeeccCCceEEecCcEEEEEeCCChH
Confidence            5789999999999999888664 47777765422   2333322 22       111       1        1112223


Q ss_pred             HHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC
Q 027668           99 EMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus        99 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      .+.+...++|+|+||+|.-...+.+..++..|.+-|++..+..
T Consensus        81 ~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  123 (166)
T d2b4ro1          81 QIPWGKCQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPPK  123 (166)
T ss_dssp             GCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             HccccccCCCEEEEecccccchhhhhhhhccCCCEEEEecccc
Confidence            3333223899999999998777788889998887777766543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.98  E-value=0.0014  Score=46.95  Aligned_cols=92  Identities=18%  Similarity=0.187  Sum_probs=60.3

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc-EEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD-SFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      ..+.++||-+|||+ |..+..+++ .|++|+.++.+++..+.+.+++   +.. .++. .+...+ ...+.||+|+...+
T Consensus        39 ~~~~~~iLDiGcGt-G~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~-~d~~~l-~~~~~fD~I~~~~~  114 (251)
T d1wzna1          39 KREVRRVLDLACGT-GIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQ-GDVLEI-AFKNEFDAVTMFFS  114 (251)
T ss_dssp             SSCCCEEEEETCTT-CHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEE-SCGGGC-CCCSCEEEEEECSS
T ss_pred             CCCCCEEEEeCCCC-Cccchhhcc-cceEEEEEeeccccccccccccccccccchhee-hhhhhc-ccccccchHhhhhh
Confidence            46778999999985 887777776 6889999999988666554432   322 2222 222111 12247999886533


Q ss_pred             Cc---------ccHHHHHhccccCCEEEE
Q 027668          116 AV---------HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus       116 ~~---------~~~~~~~~~l~~~g~iv~  135 (220)
                      .-         ..++.+.++|++||.++.
T Consensus       115 ~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         115 TIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            21         135567889999999876

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.0014  Score=43.88  Aligned_cols=96  Identities=15%  Similarity=0.205  Sum_probs=62.8

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHH--cC-------Cc-------EEe--------cCCCHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVER--LG-------AD-------SFL--------VSRDQDE   99 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~--~g-------~~-------~v~--------~~~~~~~   99 (220)
                      +|.|.|-|.+|+.+.+.+....- +++++..... .+.++..  +.       .+       .++        ...+++.
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~-~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~~   81 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLD-ADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN   81 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSC-HHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCC-HHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChHH
Confidence            47889999999999998887754 8777776533 3333221  11       11       111        1112233


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCC
Q 027668          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEK  141 (220)
Q Consensus       100 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~  141 (220)
                      +.+...++|+|+||+|.....+.+..++..|.+-|++..+..
T Consensus        82 i~W~~~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~  123 (166)
T d1gado1          82 LKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK  123 (166)
T ss_dssp             GCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             CCccccCCCEEEEccccccCHHHHHHHhcCCCceEEeecccc
Confidence            333223899999999998777788889988887777776643

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.95  E-value=0.00043  Score=47.63  Aligned_cols=35  Identities=14%  Similarity=0.344  Sum_probs=31.4

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcc
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS   77 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~   77 (220)
                      +++|+|+|+|+.|+.++..++..|+ .|+++.+.+.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            5789999999999999999999999 5889888754

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.95  E-value=0.0011  Score=50.23  Aligned_cols=76  Identities=9%  Similarity=0.137  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      ..+-+|||.|+ |-+|..++..+...|.+|+++++........ ...... ...|..+.+...+...++|.||.+++..
T Consensus        13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a~~~   90 (363)
T d2c5aa1          13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-DMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADM   90 (363)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-GGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhh-hcccCcEEEeechhHHHHHHHhhcCCeEeeccccc
Confidence            45778999997 9999999999999999999997654432111 111222 2235555666666667999999988554

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.007  Score=39.71  Aligned_cols=93  Identities=10%  Similarity=0.264  Sum_probs=64.0

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCC--CeEEEEeCC--cccHHHHHHHcCCcEEecCCCHH--------------------
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMG--VKVTVISTS--PSKKSEAVERLGADSFLVSRDQD--------------------   98 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g--~~v~~~~~~--~~~~~~~~~~~g~~~v~~~~~~~--------------------   98 (220)
                      ++|.|+|+ |++|..+..+.+.+.  .+|+..+-.  -+.+.+.+++|....++-.++..                    
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g   81 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG   81 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence            36889998 999999999999873  466655443  33455566788887765444321                    


Q ss_pred             --HHHHhc--CCccEEEEcCCCcccHHHHHhccccCCEEEEe
Q 027668           99 --EMQAAM--GTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus        99 --~~~~~~--~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~  136 (220)
                        .+.+..  ..+|+|+.+..+...+.-.+..++.+-++.+.
T Consensus        82 ~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaLA  123 (151)
T d1q0qa2          82 QQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILLA  123 (151)
T ss_dssp             HHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEEE
Confidence              111111  16899999987776788888888887776554

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.93  E-value=0.0011  Score=41.99  Aligned_cols=46  Identities=20%  Similarity=0.153  Sum_probs=38.0

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      ...++... ..++++++|+|+|.+|+-.+..++.+|.+|.++.+.+.
T Consensus        11 ~~~~~~l~-~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          11 ATLVEELD-YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             HHHHHHCC-SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             HHHHHHHh-hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            33344444 47889999999999999999999999999999998753

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.90  E-value=0.0043  Score=40.76  Aligned_cols=73  Identities=19%  Similarity=0.158  Sum_probs=48.1

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc-------CCcEEecCCCHHHHHHhcCCccEEE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL-------GADSFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      ..+.+|.|+|+|.+|..++..+...|.  ++..++..+++.+-....+       +....+...+.    +...+.|+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~----~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY----DDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG----GGTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH----HHhccceeEE
Confidence            456789999999999999998888775  7888888776532222222       11111222222    2234899999


Q ss_pred             EcCCCc
Q 027668          112 DTVSAV  117 (220)
Q Consensus       112 d~~g~~  117 (220)
                      -++|.+
T Consensus        80 itag~~   85 (148)
T d1ldna1          80 ICAGAN   85 (148)
T ss_dssp             ECCSCC
T ss_pred             Eecccc
Confidence            999885

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00053  Score=39.78  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=31.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCccc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~   78 (220)
                      ++|.|+|+|.+|++.++-++.+|.++.+.+.+++.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            47899999999999999999999999999987653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.85  E-value=0.0048  Score=40.92  Aligned_cols=91  Identities=15%  Similarity=0.244  Sum_probs=54.1

Q ss_pred             CEEEEEcCchHHH-HHHHHHHHCCC-eEEEEeCC-cc-cHHHHHHHcCCcEEecCCCHHHHHHhc--CCccEEEEcCCCc
Q 027668           44 MHVGVVGLGGLGH-VAVKFAKAMGV-KVTVISTS-PS-KKSEAVERLGADSFLVSRDQDEMQAAM--GTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~g~~G~-~~~~~~~~~g~-~v~~~~~~-~~-~~~~~~~~~g~~~v~~~~~~~~~~~~~--~~~d~vid~~g~~  117 (220)
                      =++.|+|+|.+|. ..+++++.... +++.+... .+ +.....+++|....  +...+.+.+..  .++|+||+++...
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~--~~~~d~l~~~~~~~~iDiVf~ATpag   82 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTT--YAGVEGLIKLPEFADIDFVFDATSAS   82 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEE--SSHHHHHHHSGGGGGEEEEEECSCHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCccc--ccceeeeeecccccccCEEEEcCCch
Confidence            3688999999987 56778877655 77777653 33 22244477887643  22233333322  3799999998765


Q ss_pred             ccHHHH--HhccccCCEEEEe
Q 027668          118 HPLMPL--IGLLKSQGKLVLL  136 (220)
Q Consensus       118 ~~~~~~--~~~l~~~g~iv~~  136 (220)
                      ......  .+.++.|-.++..
T Consensus        83 ~h~~~~~~~~aa~~G~~VID~  103 (157)
T d1nvmb1          83 AHVQNEALLRQAKPGIRLIDL  103 (157)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEC
T ss_pred             hHHHhHHHHHHHHcCCEEEEc
Confidence            334433  3334444444443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.84  E-value=0.00088  Score=48.19  Aligned_cols=35  Identities=31%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ..++|+|+|+|+.|++++..++..|.+|+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45789999999999999999999999999999764

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.84  E-value=0.0011  Score=47.60  Aligned_cols=73  Identities=12%  Similarity=0.093  Sum_probs=48.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHH---HCCCeEEEEeCCcccHHHHHH---HcCC-c-EEecCCCHHHHH-------Hhc--C
Q 027668           44 MHVGVVGL-GGLGHVAVKFAK---AMGVKVTVISTSPSKKSEAVE---RLGA-D-SFLVSRDQDEMQ-------AAM--G  105 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~---~~g~~v~~~~~~~~~~~~~~~---~~g~-~-~v~~~~~~~~~~-------~~~--~  105 (220)
                      ++|||.|+ +++|+++++.+.   ..|++|+++++++++.+++.+   ..+- . ...|-.+.+.++       +..  +
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            57999997 899999987664   468899999999887665532   2222 1 123444433222       221  3


Q ss_pred             CccEEEEcCCC
Q 027668          106 TMDGIIDTVSA  116 (220)
Q Consensus       106 ~~d~vid~~g~  116 (220)
                      ++|++|+++|.
T Consensus        83 ~iDiLvnNAg~   93 (248)
T d1snya_          83 GLNVLFNNAGI   93 (248)
T ss_dssp             CCSEEEECCCC
T ss_pred             CcceEEeeccc
Confidence            79999999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.84  E-value=0.00037  Score=48.08  Aligned_cols=82  Identities=12%  Similarity=0.100  Sum_probs=55.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcE-----EecCCC---HHHHHHhcCCccEEEEcCC
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADS-----FLVSRD---QDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~-----v~~~~~---~~~~~~~~~~~d~vid~~g  115 (220)
                      .+|.|+|+|..|.+++..+...|.+|.+.+++++..+.+.+. +.+.     +-.+.+   ...+.+...+.|++|-++.
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~-~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP   86 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK-RENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP   86 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHH-TBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhc-ccccccccccccccccccchhhhhccCCCCEEEEcCc
Confidence            469999999999999999999999999999998876665332 2100     000111   1123444567899999998


Q ss_pred             CcccHHHHHhcc
Q 027668          116 AVHPLMPLIGLL  127 (220)
Q Consensus       116 ~~~~~~~~~~~l  127 (220)
                      .. .++..++.+
T Consensus        87 s~-~~~~~~~~~   97 (189)
T d1n1ea2          87 TQ-FLRGFFEKS   97 (189)
T ss_dssp             HH-HHHHHHHHH
T ss_pred             HH-HHHHHHHHH
Confidence            76 356655544

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.00071  Score=47.86  Aligned_cols=94  Identities=16%  Similarity=0.137  Sum_probs=60.6

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHH---CCCeEEEEeCCcccHHHHHHHc---CC--c-EEecCCCHHHHHHhcCCccEE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKA---MGVKVTVISTSPSKKSEAVERL---GA--D-SFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~---~g~~v~~~~~~~~~~~~~~~~~---g~--~-~v~~~~~~~~~~~~~~~~d~v  110 (220)
                      ++|+.+||-+|||. |..+..+++.   .|++|+.++.+++..+.+.+.+   +.  . ...+.+..+.   ..+.+|++
T Consensus        37 ~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~---~~~~~d~i  112 (225)
T d1im8a_          37 VTADSNVYDLGCSR-GAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV---EIKNASMV  112 (225)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC---CCCSEEEE
T ss_pred             cCCCCEEEEeccch-hhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc---ccccceee
Confidence            58999999999874 7777777764   4779999999998777775433   22  1 1122111110   11256776


Q ss_pred             EEcCCCc--------ccHHHHHhccccCCEEEEec
Q 027668          111 IDTVSAV--------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 id~~g~~--------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      +-+....        ..++.+.+.|+|||.++...
T Consensus       113 ~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         113 ILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            6543321        13667888999999999864

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.82  E-value=0.0047  Score=42.01  Aligned_cols=90  Identities=12%  Similarity=0.116  Sum_probs=60.9

Q ss_pred             EEEEEcCchHHHHHHHHHHHC-CCeEEEE-eCCcccHHHHHHHcCC---cEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAM-GVKVTVI-STSPSKKSEAVERLGA---DSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~-g~~v~~~-~~~~~~~~~~~~~~g~---~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      ++.|+|+|.+|...++.++.. +++++.+ ++++++.+.+.++++.   ..++  .+.+.+-+ ...+|+|+-|+.....
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~ll~-~~~iD~v~I~tp~~~h   79 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIH--GSYESLLE-DPEIDALYVPLPTSLH   79 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEE--SSHHHHHH-CTTCCEEEECCCGGGH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeec--CcHHHhhh-ccccceeeecccchhh
Confidence            578999999999888888876 5587755 5555566666677774   2233  23333222 1379999999988766


Q ss_pred             HHHHHhccccCCEEEEecC
Q 027668          120 LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g~  138 (220)
                      .+.+..+++.| .=+.+.-
T Consensus        80 ~~~~~~~l~~g-~~v~~EK   97 (184)
T d1ydwa1          80 VEWAIKAAEKG-KHILLEK   97 (184)
T ss_dssp             HHHHHHHHTTT-CEEEECS
T ss_pred             cchhhhhhhcc-ceeeccc
Confidence            77788888865 4455543

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00025  Score=52.88  Aligned_cols=70  Identities=17%  Similarity=0.148  Sum_probs=44.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-cHHHHHHHcCC--cEEecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-KKSEAVERLGA--DSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-~~~~~~~~~g~--~~v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      ++|||.|+ |-+|..++..+...|.+|+++++... +.+.+......  -.+.+.+   ..+....++|+||.+++.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~---~~~~~~~~~d~VihlAa~   75 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHD---VVEPLYIEVDQIYHLASP   75 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECC---TTSCCCCCCSEEEECCSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehH---HHHHHHcCCCEEEECccc
Confidence            68999997 99999999999889999999876332 22222111111  1122222   222233479999998765

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.77  E-value=0.029  Score=37.78  Aligned_cols=133  Identities=19%  Similarity=0.167  Sum_probs=77.0

Q ss_pred             EEEEEcCchHHHH-HHHHHHHCC--CeEEE-EeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           45 HVGVVGLGGLGHV-AVKFAKAMG--VKVTV-ISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        45 ~vlI~G~g~~G~~-~~~~~~~~g--~~v~~-~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      +|.|+|+|..|.. .+..++..+  .+++. .++++++.+.+.++++...+++  +.+.+-+ ...+|+|+-|+......
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~--~~~ell~-~~~id~v~I~tp~~~h~   81 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD--SYEELLE-SGLVDAVDLTLPVELNL   81 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES--CHHHHHH-SSCCSEEEECCCGGGHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee--eeecccc-ccccceeeccccccccc
Confidence            5789999999975 466666543  36664 4555666777777888776643  3222211 13799999998877556


Q ss_pred             HHHHhccccCCEEEEecCCCCCcccCcc---cc-ccCCcEE-EEeecc-C--HHHHHHHHHHHHhCCcc
Q 027668          121 MPLIGLLKSQGKLVLLGAPEKPLELPAF---PL-LTGEKIV-GGSLIG-G--LKETQEMIDFAAKHNIR  181 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~~~~~~~~~~~---~~-~~~~~~i-~~~~~~-~--~~~~~~~~~~~~~~~~~  181 (220)
                      ..+..+++.| +=|++.-+-....-...   .+ -.++..+ .+.... +  ...+..+.+++.+|.+-
T Consensus        82 ~~~~~al~~g-k~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~ig  149 (181)
T d1zh8a1          82 PFIEKALRKG-VHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGKPN  149 (181)
T ss_dssp             HHHHHHHHTT-CEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCCCC
T ss_pred             cccccccccc-hhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCCCc
Confidence            6777777765 45555443221111111   11 1223333 343322 2  24577788888888653

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.77  E-value=0.0039  Score=44.89  Aligned_cols=74  Identities=19%  Similarity=0.196  Sum_probs=48.2

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccH-HHHHH----HcCCcEEec---C---CC-HHHHH-------Hh
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKK-SEAVE----RLGADSFLV---S---RD-QDEMQ-------AA  103 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~----~~g~~~v~~---~---~~-~~~~~-------~~  103 (220)
                      ...||.|+ +++|.++++.+...|++|++++++.++. +.+.+    ..+......   .   .. .+.++       +.
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            35688897 8999999999999999999999886643 33323    223332221   1   11 22222       22


Q ss_pred             cCCccEEEEcCCCc
Q 027668          104 MGTMDGIIDTVSAV  117 (220)
Q Consensus       104 ~~~~d~vid~~g~~  117 (220)
                      .+++|++++++|..
T Consensus        82 ~g~iDilvnnAG~~   95 (266)
T d1mxha_          82 FGRCDVLVNNASAY   95 (266)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             hCCCCEEEECCccC
Confidence            35899999999853

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.76  E-value=0.00086  Score=49.15  Aligned_cols=34  Identities=32%  Similarity=0.368  Sum_probs=31.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      +++|+|+|+|+.|++++..++..|.+|.++.+.+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5789999999999999999999999999998764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.75  E-value=0.0048  Score=45.11  Aligned_cols=74  Identities=20%  Similarity=0.236  Sum_probs=52.8

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-----HHHH--HHHcCCcEEe-cCCCHHHHHHhcCCccEEEEcC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-----KSEA--VERLGADSFL-VSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-----~~~~--~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      ++|||.|+ |-+|..++..+...|.+|++++++...     .+.+  .+..+++.+. |..+.+.+.+...+.+.++.+.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~   83 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL   83 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence            56999997 999999999999999999999986432     1111  1233455432 4456677777777889999887


Q ss_pred             CCc
Q 027668          115 SAV  117 (220)
Q Consensus       115 g~~  117 (220)
                      +..
T Consensus        84 ~~~   86 (312)
T d1qyda_          84 AGG   86 (312)
T ss_dssp             CCS
T ss_pred             hhc
Confidence            653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.74  E-value=0.0019  Score=41.00  Aligned_cols=38  Identities=29%  Similarity=0.453  Sum_probs=34.7

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      ++++++++|+|+|.+|.-++..++.+|.+|+++.+.+.
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            46789999999999999999999999999999998764

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.74  E-value=0.008  Score=43.11  Aligned_cols=122  Identities=15%  Similarity=0.167  Sum_probs=69.9

Q ss_pred             hhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc-----------cHHHHH---------------HHc
Q 027668           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS-----------KKSEAV---------------ERL   86 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~-----------~~~~~~---------------~~~   86 (220)
                      +++....--.|.+|+|.|.|.+|..+++.+...|++|+++..+..           ++....               ...
T Consensus        26 ~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~  105 (255)
T d1bgva1          26 VMKHENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKF  105 (255)
T ss_dssp             HHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHH
T ss_pred             HHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhc
Confidence            344443334789999999999999999999999999998875421           111110               111


Q ss_pred             CCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccc-ccc-CCcEEEEe
Q 027668           87 GADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP-LLT-GEKIVGGS  160 (220)
Q Consensus        87 g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~-~~~-~~~~i~~~  160 (220)
                      +.+. +...+.     +.-..|+.+=|+.....-......++..|.-+.++.-+.+.+..... ++. +++.+.+-
T Consensus       106 ~~~~-~~~~~~-----~~~~~DiliPcA~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea~~~ll~~~gI~vvPD  175 (255)
T d1bgva1         106 GVQF-FPGEKP-----WGQKVDIIMPCATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEALRFLMQQPNMVVAPS  175 (255)
T ss_dssp             TCEE-EETCCG-----GGSCCSEEECCSCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHHHHHHHCTTCEEECH
T ss_pred             Ccee-echhhc-----ccccccEEeeccccccccHHHHHhhhhcCceEEecCCCCCcchHHHHHHHHhcCCEEehH
Confidence            1111 111110     11278999988876644445566666555444445545554444322 233 56666553

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0082  Score=44.83  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=63.6

Q ss_pred             hhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH----------HcCC----cEEecCCC
Q 027668           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE----------RLGA----DSFLVSRD   96 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~----------~~g~----~~v~~~~~   96 (220)
                      ..+.... ++++++||-+|+|. |..+.++++..|+ +++.++.++...+.+.+          .+|.    -.++..+-
T Consensus       142 ~~~~~~~-l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         142 QMIDEIK-MTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHSC-CCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHcC-CCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            3455554 89999999999984 8888999999998 79999999875444321          1221    11222221


Q ss_pred             -HHHHHHhcCCccEEEEc-CCCc-c---cHHHHHhccccCCEEEEec
Q 027668           97 -QDEMQAAMGTMDGIIDT-VSAV-H---PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus        97 -~~~~~~~~~~~d~vid~-~g~~-~---~~~~~~~~l~~~g~iv~~g  137 (220)
                       .....+....+|+|+-. .... +   .+....+.|++||++|..-
T Consensus       220 ~~~~~~~~~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~  266 (328)
T d1nw3a_         220 LSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK  266 (328)
T ss_dssp             TSHHHHHHHHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred             cccccccccCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence             11122211246787732 2221 1   2455677899999999764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.73  E-value=0.0015  Score=47.37  Aligned_cols=58  Identities=16%  Similarity=0.143  Sum_probs=44.0

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcC--CccEEEEcCCCc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSAV  117 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~d~vid~~g~~  117 (220)
                      +|||.|+ |-+|..++..++..|.+|+.+++.+-               |..+.+.++++..  .+|+||.+++..
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~---------------D~~d~~~~~~~l~~~~~d~vih~a~~~   63 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQDL---------------DITNVLAVNKFFNEKKPNVVINCAAHT   63 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTC---------------CTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeechhc---------------cCCCHHHHHHHHHHcCCCEEEeecccc
Confidence            5899997 99999999999999999999887531               2334444444433  678999988765

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0016  Score=44.93  Aligned_cols=39  Identities=26%  Similarity=0.360  Sum_probs=35.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA   82 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~   82 (220)
                      ++|.|+|+|.+|...++++...|++|++.+.+++.++.+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHH
Confidence            689999999999999999999999999999998765544

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.73  E-value=0.014  Score=39.34  Aligned_cols=93  Identities=24%  Similarity=0.228  Sum_probs=62.7

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc----EEecCCCHHHHHHhcCCccEEEEcCCCcccH-
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD----SFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL-  120 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~----~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~-  120 (220)
                      |-|+|.|.+|...++-+...|.+|++.++++++.+.+.++.+..    ........+.+.......+.++.+....... 
T Consensus         4 IGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1pgja2           4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAATD   83 (178)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHHH
T ss_pred             EEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcchhh
Confidence            67899999999999999999999999999999988886654421    1111223334444445667777777665332 


Q ss_pred             ---HHHHhccccCCEEEEecC
Q 027668          121 ---MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ---~~~~~~l~~~g~iv~~g~  138 (220)
                         ......+.++..++..+.
T Consensus        84 ~~~~~~~~~~~~~~iii~~st  104 (178)
T d1pgja2          84 STIEQLKKVFEKGDILVDTGN  104 (178)
T ss_dssp             HHHHHHHHHCCTTCEEEECCC
T ss_pred             hhhhhhhhhccccceecccCc
Confidence               344555666666666554

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=96.72  E-value=0.01  Score=39.82  Aligned_cols=130  Identities=15%  Similarity=0.180  Sum_probs=73.9

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHH--cCC-------cEE---------------ecCCCHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVER--LGA-------DSF---------------LVSRDQDE   99 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~--~g~-------~~v---------------~~~~~~~~   99 (220)
                      +|.|.|-|.+|+.+.+.+.... .+++++.... ..+.++.-  +..       ..-               ....++..
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~~-d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~   81 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDLT-DANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECSS-CHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCCC-CHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence            5778999999999998887654 4777776543 33333221  111       100               11111222


Q ss_pred             HHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCccc------CccccccCCcEEEEeeccCHHHHHHHHH
Q 027668          100 MQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLEL------PAFPLLTGEKIVGGSLIGGLKETQEMID  173 (220)
Q Consensus       100 ~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~~~  173 (220)
                      +.+...++|+|+||+|.....+.+..++..+.+-|++..+....+.      +-..+-.+..++......+...+-.+++
T Consensus        82 i~W~~~~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~d~~~t~V~GvN~~~~~~~~~~iIS~aSCTtn~laPv~k  161 (171)
T d3cmco1          82 LAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAKNEDITIVMGVNQDKYDPKAHHVISNASNETGYSHRVVD  161 (171)
T ss_dssp             CCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCBSCSEECCTTTSGGGCCTTTCCEEECCCTTHHHHHHHHH
T ss_pred             ccccccCCcEEEEecCccCCHHHHHHHHhCCCceEEEecccccccceeeeccchheecCCCCeEEEehhHHHhHHHHHHH
Confidence            2222238999999999987778888889888777777665432211      1111111334455444445555555555


Q ss_pred             HH
Q 027668          174 FA  175 (220)
Q Consensus       174 ~~  175 (220)
                      .+
T Consensus       162 vl  163 (171)
T d3cmco1         162 LA  163 (171)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.71  E-value=0.0018  Score=40.71  Aligned_cols=35  Identities=23%  Similarity=0.233  Sum_probs=32.1

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .++++|+|+|.+|+-+++.+..+|.+|+++.+.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            37899999999999999999999999999988764

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.68  E-value=0.0053  Score=45.88  Aligned_cols=36  Identities=22%  Similarity=0.161  Sum_probs=30.2

Q ss_pred             CCEEEEEcCc---hHHHHHHHHHHHCCCeEEEEeCCccc
Q 027668           43 GMHVGVVGLG---GLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus        43 ~~~vlI~G~g---~~G~~~~~~~~~~g~~v~~~~~~~~~   78 (220)
                      ++.+||.|+|   ++|+++++.+...|++|+++.+....
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~   40 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVY   40 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhh
Confidence            5678889943   89999999999999999998876553

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.68  E-value=0.0027  Score=40.32  Aligned_cols=37  Identities=32%  Similarity=0.267  Sum_probs=33.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .++++|+|+|+|.+|+-++..+..+|.+|+++.+.+.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            5678999999999999999999999999999988753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.67  E-value=0.002  Score=40.55  Aligned_cols=37  Identities=19%  Similarity=0.365  Sum_probs=33.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ++..++|+|+|+|.+|+-++..++.+|.+|+++.+.+
T Consensus        19 l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          19 IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             cCCCCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            3445899999999999999999999999999999875

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=96.67  E-value=0.0028  Score=42.50  Aligned_cols=95  Identities=15%  Similarity=0.210  Sum_probs=59.9

Q ss_pred             EEEEEcCchHHHHHHHHHHHC---CCeEEEEeCCcccHHHHHHH--cC-------CcE-------Ee--------cCCCH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAM---GVKVTVISTSPSKKSEAVER--LG-------ADS-------FL--------VSRDQ   97 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~---g~~v~~~~~~~~~~~~~~~~--~g-------~~~-------v~--------~~~~~   97 (220)
                      +|.|.|-|-+|+.+.+.+...   +.+++.+.... ..+.++-.  +.       .+.       ++        +..++
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~-~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLT-DTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSS-CHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCc-cHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            688999999999999977643   35777776543 23333221  11       111       11        11112


Q ss_pred             HHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668           98 DEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        98 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +.+.+..-++|+||||+|.-.....+..+++.|.+-|++..+.
T Consensus        81 ~~i~W~~~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~  123 (169)
T d1hdgo1          81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPA  123 (169)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             hhCCccccCCCEEEEecceeccccchhhhccCCCceEEEeccc
Confidence            2222221289999999999877788888998887777776664

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.00061  Score=44.94  Aligned_cols=47  Identities=6%  Similarity=-0.041  Sum_probs=27.8

Q ss_pred             cccCcceeeCCCCCCcccccccchhhhhhhhhhH-hccCCCCCCEEEE
Q 027668            2 VADEHFVVRIPEGAPLDATAPLLCAGITVYSPLR-FYGLDKPGMHVGV   48 (220)
Q Consensus         2 ~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~-~~~~~~~~~~vlI   48 (220)
                      +++.+.++++|++++++.+++......+++.+.. ...++++|++|||
T Consensus        99 ~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~~~~~~G~~VLI  146 (147)
T d1qora1          99 NIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLI  146 (147)
T ss_dssp             EEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEE
T ss_pred             EEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence            5788999999999998755422111100000000 0134899999997

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.002  Score=47.35  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=58.6

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC-----cEEecCCCHHHHH-Hh--cCCccE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA-----DSFLVSRDQDEMQ-AA--MGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~-----~~v~~~~~~~~~~-~~--~~~~d~  109 (220)
                      +++.+||-+|||. |..++.+++. |++|+.++.+++.++.+.+..   +.     ...+...+..... ..  .+.||.
T Consensus        55 ~~~~~vLD~GcG~-G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~  132 (292)
T d1xvaa_          55 HGCHRVLDVACGT-GVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDA  132 (292)
T ss_dssp             TTCCEEEESSCTT-SHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             cCCCEEEEecCCC-cHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceE
Confidence            5678999999875 7778888775 899999999988666553321   11     1111111111111 11  237999


Q ss_pred             EEEcCCCc--------------ccHHHHHhccccCCEEEE
Q 027668          110 IIDTVSAV--------------HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus       110 vid~~g~~--------------~~~~~~~~~l~~~g~iv~  135 (220)
                      |+.....-              ..++.+.+.|+|||.++.
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         133 VICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             EEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            98643211              136778889999999886

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=96.63  E-value=0.029  Score=38.16  Aligned_cols=95  Identities=15%  Similarity=0.247  Sum_probs=58.0

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC---C--eEEEEeCCc---ccHHHHHHHcC-------Cc---------------EEec-
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG---V--KVTVISTSP---SKKSEAVERLG-------AD---------------SFLV-   93 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g---~--~v~~~~~~~---~~~~~~~~~~g-------~~---------------~v~~-   93 (220)
                      +|.|.|-|-+|..+.+.+...+   .  +++.+....   +....+.+ +.       .+               .+++ 
T Consensus         4 kigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlk-yDSvhG~~~~~v~~~~~~~~~~~~~~~i~~g   82 (190)
T d1k3ta1           4 KVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMR-YDTVHGKFKYEVTTTKSSPSVAKDDTLVVNG   82 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHH-EETTTEECSSCEEEECSSTTCSSCCEEEETT
T ss_pred             EEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhh-ccccccCCCceEEEccCccccccccceEEcC
Confidence            5789999999999998776543   2  455444332   22222322 22       11               1111 


Q ss_pred             --------CCCHHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668           94 --------SRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        94 --------~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                              ..+++.+.+..-++|+|+||+|.-.....+..++..|.+-|++..+.
T Consensus        83 ~~i~~~~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~  137 (190)
T d1k3ta1          83 HRILCVKAQRNPADLPWGKLGVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA  137 (190)
T ss_dssp             EEEEEEECCSCGGGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             ceEEecccCCChhHCCHhhcCCcEEEEecccccccccchhhcccCcceeeeccCC
Confidence                    12223332222389999999998767778888999888778776654

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=96.63  E-value=0.0046  Score=41.64  Aligned_cols=95  Identities=15%  Similarity=0.222  Sum_probs=60.0

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC----CeEEEEeCCcccHHHHHH--HcC-------CcE---------------EecCCC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG----VKVTVISTSPSKKSEAVE--RLG-------ADS---------------FLVSRD   96 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g----~~v~~~~~~~~~~~~~~~--~~g-------~~~---------------v~~~~~   96 (220)
                      +|.|.|-|-+|+++.+.+...+    .+++++..... .+.++.  ++.       ...               ++...+
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~-~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGD-PKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSC-HHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCC-hHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            5788999999999998776432    36666665422 222222  121       110               111222


Q ss_pred             HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668           97 QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        97 ~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++.+.+..-++|+|+||+|.-.....+..+|..|.+-|++..+.
T Consensus        82 p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~  125 (173)
T d1obfo1          82 PAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPG  125 (173)
T ss_dssp             GGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCC
T ss_pred             HHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCC
Confidence            23333322389999999998766778889999998888887664

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0018  Score=40.75  Aligned_cols=34  Identities=24%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      ++++|+|+|.+|+-+++.++.+|.+|.++.+.+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            7899999999999999999999999999988763

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.00035  Score=46.38  Aligned_cols=80  Identities=14%  Similarity=0.070  Sum_probs=51.7

Q ss_pred             EEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHHhc
Q 027668           47 GVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLIGL  126 (220)
Q Consensus        47 lI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~  126 (220)
                      -++|+|.+|...++.++..+....+..|+.++.+.+.+..+... .+..      +.....|+||-|+... .+...+..
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~-~~~~------~~~~~~DiVil~v~d~-~i~~v~~~   74 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKA-ATLE------KHPELNGVVFVIVPDR-YIKTVANH   74 (153)
T ss_dssp             EEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCC-CSSC------CCCC---CEEECSCTT-THHHHHTT
T ss_pred             EEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccc-cchh------hhhccCcEEEEeccch-hhhHHHhh
Confidence            36799999999988776544344578999998888877666432 1211      2234679999999876 57888888


Q ss_pred             cccCCEEE
Q 027668          127 LKSQGKLV  134 (220)
Q Consensus       127 l~~~g~iv  134 (220)
                      ++..+.++
T Consensus        75 l~~~~~iv   82 (153)
T d2i76a2          75 LNLGDAVL   82 (153)
T ss_dssp             TCCSSCCE
T ss_pred             hcccceee
Confidence            87555444

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.62  E-value=0.0018  Score=44.74  Aligned_cols=98  Identities=21%  Similarity=0.241  Sum_probs=59.9

Q ss_pred             ccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHH---HHcCCcEE-ecCCCHHHHHHhcCCccEEEE
Q 027668           37 YGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGADSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        37 ~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~---~~~g~~~v-~~~~~~~~~~~~~~~~d~vid  112 (220)
                      ...+++| +||-+||| .|..+..+++ .|++|+.++.+++..+.+.   +..|.+.+ +...+.... ...+.||+|+.
T Consensus        26 ~~~~~~g-rvLDiGcG-~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~-~~~~~fD~I~~  101 (198)
T d2i6ga1          26 AKVVAPG-RTLDLGCG-NGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTL-TFDGEYDFILS  101 (198)
T ss_dssp             HTTSCSC-EEEEETCT-TSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTC-CCCCCEEEEEE
T ss_pred             cccCCCC-cEEEECCC-CCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccc-cccccccEEEE
Confidence            3334555 89999997 5877777765 6999999999988665542   23343311 111111111 11247999986


Q ss_pred             cCCCc--------ccHHHHHhccccCCEEEEecC
Q 027668          113 TVSAV--------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~g~~--------~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      .....        ..+..+.+.|+++|.++....
T Consensus       102 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             ESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             eeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            33221        135567778999999987654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.0018  Score=41.08  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ++++|+|+|.+|+-+++.+..+|.+|.++.+.+
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            799999999999999999999999999998875

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.59  E-value=0.0015  Score=44.73  Aligned_cols=43  Identities=21%  Similarity=0.274  Sum_probs=36.6

Q ss_pred             EEEEE-cCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC
Q 027668           45 HVGVV-GLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG   87 (220)
Q Consensus        45 ~vlI~-G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g   87 (220)
                      +|.|+ |+|.+|.++++.+...|++|++.+|++++.+.+.++++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            57788 56999999999999999999999999988777755543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.57  E-value=0.0026  Score=40.11  Aligned_cols=35  Identities=26%  Similarity=0.358  Sum_probs=32.0

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .++++|+|+|.+|+-.++.++.+|.+|.++.+.+.
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            38899999999999999999999999999998753

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0013  Score=47.87  Aligned_cols=94  Identities=20%  Similarity=0.231  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      .++.+||=+|+|. |..+..+++.. +.+++.++.++...+.+.+..........+- ..+.-..+.||+|+...... .
T Consensus        83 ~~~~~iLDiGcG~-G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~-~~l~~~~~sfD~v~~~~~~~-~  159 (268)
T d1p91a_          83 DKATAVLDIGCGE-GYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASS-HRLPFSDTSMDAIIRIYAPC-K  159 (268)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCT-TSCSBCTTCEEEEEEESCCC-C
T ss_pred             CCCCEEEEeCCCC-cHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeeh-hhccCCCCCEEEEeecCCHH-H
Confidence            5778999999875 77777777765 5699999999988777765554322221111 11111113699999655444 5


Q ss_pred             HHHHHhccccCCEEEEec
Q 027668          120 LMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g  137 (220)
                      +..+.+.|+|||.++...
T Consensus       160 ~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         160 AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             HHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHHhCCCcEEEEEe
Confidence            888999999999999775

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.015  Score=34.42  Aligned_cols=68  Identities=22%  Similarity=0.320  Sum_probs=48.0

Q ss_pred             EEEEEcCchHHHH-HHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           45 HVGVVGLGGLGHV-AVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        45 ~vlI~G~g~~G~~-~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      +|-++|-|++|+. ++++++..|+.|...+..+......+++.|+... ...+.+.+    .++|+|+-+..-+
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~-~gh~~~~i----~~~d~vV~SsAI~   71 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIF-VPHSADNW----YDPDLVIKTPAVR   71 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEE-SSCCTTSC----CCCSEEEECTTCC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEE-eeeccccc----CCCCEEEEecCcC
Confidence            5677898778874 4789999999999999887655555588898743 33333322    3688888766554

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=96.50  E-value=0.0061  Score=45.15  Aligned_cols=73  Identities=18%  Similarity=0.253  Sum_probs=48.3

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc--ccHHHH--HHHcC-CcEE-ecCCCHHHHHHhcC--CccEEEEcCC
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP--SKKSEA--VERLG-ADSF-LVSRDQDEMQAAMG--TMDGIIDTVS  115 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~--~~~~~~--~~~~g-~~~v-~~~~~~~~~~~~~~--~~d~vid~~g  115 (220)
                      +|||.|+ |-+|..+++.+...|.+|+++++-.  .+...+  .+..+ .+.+ .|-.+.+.+.+...  ++|+||.+++
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa   81 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence            6999997 9999999999999999999986422  111111  12232 3332 24445555655543  6899999887


Q ss_pred             Cc
Q 027668          116 AV  117 (220)
Q Consensus       116 ~~  117 (220)
                      ..
T Consensus        82 ~~   83 (338)
T d1orra_          82 QV   83 (338)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.50  E-value=0.0054  Score=41.64  Aligned_cols=90  Identities=14%  Similarity=0.175  Sum_probs=55.5

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCccc--HHHHHHHcCCcEEe----cC---CCHHHHHHhcCCccEEEEcCC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK--KSEAVERLGADSFL----VS---RDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~--~~~~~~~~g~~~v~----~~---~~~~~~~~~~~~~d~vid~~g  115 (220)
                      +|.|+|+|..|.+++..+...|.+|.+.++..+.  .+...+ -.....+    ..   ...+...+...+.|+||.++.
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISA-GREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHT-TCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhh-hhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            5789999999999999999999999999885432  222211 1110000    00   012334455568999999998


Q ss_pred             CcccHHHHHhcccc---CCEEEEe
Q 027668          116 AVHPLMPLIGLLKS---QGKLVLL  136 (220)
Q Consensus       116 ~~~~~~~~~~~l~~---~g~iv~~  136 (220)
                      .. .++..++.+++   ...++.+
T Consensus        81 s~-~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          81 TD-GVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             GG-GHHHHHHHHTTTCCSCEEEEC
T ss_pred             hh-hhHHHHHhhccccccceeccc
Confidence            87 46665554443   3444443

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.48  E-value=0.0055  Score=46.76  Aligned_cols=74  Identities=15%  Similarity=0.123  Sum_probs=48.0

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc--------------------cHHHHHHHcC--CcEE-ecCCCHH
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS--------------------KKSEAVERLG--ADSF-LVSRDQD   98 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~--------------------~~~~~~~~~g--~~~v-~~~~~~~   98 (220)
                      |.+|||.|+ |-+|..+++.+...|.+|++++.-..                    .........+  .+.+ .|-.+.+
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~   80 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE   80 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence            689999997 99999999999999999999863111                    1111111112  2222 2444556


Q ss_pred             HHHHhcC--CccEEEEcCCC
Q 027668           99 EMQAAMG--TMDGIIDTVSA  116 (220)
Q Consensus        99 ~~~~~~~--~~d~vid~~g~  116 (220)
                      .++++..  .+|+||.+++.
T Consensus        81 ~l~~~~~~~~~d~ViHlAa~  100 (393)
T d1i24a_          81 FLAESFKSFEPDSVVHFGEQ  100 (393)
T ss_dssp             HHHHHHHHHCCSEEEECCSC
T ss_pred             HHHHHHHhhcchheeccccc
Confidence            6666543  78999998864

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.47  E-value=0.0035  Score=43.42  Aligned_cols=71  Identities=21%  Similarity=0.195  Sum_probs=49.1

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHH---------------HhcCCccE
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQ---------------AAMGTMDG  109 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~---------------~~~~~~d~  109 (220)
                      +|.|+|.|-+|+.++..+...|.+|++++.++++.+.+.  -|..........+.+.               +.....|+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln--~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~   79 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN--QGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDV   79 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH--TTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSE
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc--ccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCE
Confidence            478999999999999999999999999999988776663  2322222222122221               11126799


Q ss_pred             EEEcCCCc
Q 027668          110 IIDTVSAV  117 (220)
Q Consensus       110 vid~~g~~  117 (220)
                      +|-|++.+
T Consensus        80 i~i~VpTP   87 (202)
T d1mv8a2          80 SFICVGTP   87 (202)
T ss_dssp             EEECCCCC
T ss_pred             EEEecCcc
Confidence            99999875

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0062  Score=45.48  Aligned_cols=73  Identities=15%  Similarity=0.062  Sum_probs=48.9

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc----HHHHH--HHcCCcEE-ecCCCHHHHHHhcC--CccEEEEcC
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK----KSEAV--ERLGADSF-LVSRDQDEMQAAMG--TMDGIIDTV  114 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~----~~~~~--~~~g~~~v-~~~~~~~~~~~~~~--~~d~vid~~  114 (220)
                      +|||.|+ |-+|..++..+...|.+|+++++....    .....  ..-+...+ .|-.+.+.+.+...  ++|+||.++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHlA   81 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEECC
Confidence            5899997 999999999999999999998753221    11111  11123332 24455666665543  899999988


Q ss_pred             CCc
Q 027668          115 SAV  117 (220)
Q Consensus       115 g~~  117 (220)
                      +..
T Consensus        82 a~~   84 (338)
T d1udca_          82 GLK   84 (338)
T ss_dssp             SCC
T ss_pred             Ccc
Confidence            653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.45  E-value=0.0024  Score=45.23  Aligned_cols=37  Identities=27%  Similarity=0.283  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      +.+++|+|+|+|+.|+.++..++..|.+|+++...++
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            5678999999999999999999999999999987654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.42  E-value=0.0038  Score=40.15  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=34.4

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      ++++++++|+|+|.+|+-++..++..|.+|.++.+.+.
T Consensus        32 ~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          32 LIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             hccCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            46779999999999999999999999999999998754

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.011  Score=39.30  Aligned_cols=87  Identities=17%  Similarity=0.174  Sum_probs=58.3

Q ss_pred             EEEEEcCchHHHH-HHHHHHHC-CCeEEEEe-CCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHH
Q 027668           45 HVGVVGLGGLGHV-AVKFAKAM-GVKVTVIS-TSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        45 ~vlI~G~g~~G~~-~~~~~~~~-g~~v~~~~-~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~  121 (220)
                      +|.|+|+|.+|.- .+..++.. +.+++.+. +++++.+.+.++++...   ..+.+.   +...+|+|+-|+.......
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~---l~~~~D~V~I~tp~~~h~~   76 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPY---ADSLSS---LAASCDAVFVHSSTASHFD   76 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCB---CSSHHH---HHTTCSEEEECSCTTHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccc---cccchh---hhhhcccccccccchhccc
Confidence            5789999999964 56666654 66776554 55667777778888652   222222   3357999999998876677


Q ss_pred             HHHhccccCCEEEEecC
Q 027668          122 PLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       122 ~~~~~l~~~g~iv~~g~  138 (220)
                      .+..+++.|-. |++.-
T Consensus        77 ~~~~al~~gk~-V~~EK   92 (164)
T d1tlta1          77 VVSTLLNAGVH-VCVDK   92 (164)
T ss_dssp             HHHHHHHTTCE-EEEES
T ss_pred             cccccccccce-eeccc
Confidence            77777776644 55544

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=96.40  E-value=0.0035  Score=44.11  Aligned_cols=99  Identities=18%  Similarity=0.138  Sum_probs=59.3

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCc-EEecCCCHHHHHHhcCCccEEEE
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGAD-SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~-~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      ++......++.+||=+|||. |..+..++ ..|.+|++++.+++..+.+.+.++-. ..+.. +.+.. ...+.||+|+-
T Consensus        12 ~~~~~~~~~~~~VLDiGcG~-G~~~~~l~-~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~-~~~~~-~~~~~fD~I~~   87 (225)
T d2p7ia1          12 VRAFTPFFRPGNLLELGSFK-GDFTSRLQ-EHFNDITCVEASEEAISHAQGRLKDGITYIHS-RFEDA-QLPRRYDNIVL   87 (225)
T ss_dssp             HHHHGGGCCSSCEEEESCTT-SHHHHHHT-TTCSCEEEEESCHHHHHHHHHHSCSCEEEEES-CGGGC-CCSSCEEEEEE
T ss_pred             HHHhhhhCCCCcEEEEeCCC-cHHHHHHH-HcCCeEEEEeCcHHHhhhhhcccccccccccc-ccccc-ccccccccccc
Confidence            33443345667899999875 76665554 46889999999998777775555422 22222 22111 12247999974


Q ss_pred             cCCCc-----c-cHHHHH-hccccCCEEEEe
Q 027668          113 TVSAV-----H-PLMPLI-GLLKSQGKLVLL  136 (220)
Q Consensus       113 ~~g~~-----~-~~~~~~-~~l~~~g~iv~~  136 (220)
                      .---.     . .+.... ++|++||.++..
T Consensus        88 ~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          88 THVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             ESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence            32111     1 133444 578999998864

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=96.38  E-value=0.011  Score=42.81  Aligned_cols=33  Identities=21%  Similarity=0.127  Sum_probs=27.8

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .+||.|+ +++|.++++.+...|++|++.++.++
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   37 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA   37 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence            4577786 89999999999999999998877654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.38  E-value=0.0032  Score=44.86  Aligned_cols=35  Identities=20%  Similarity=0.300  Sum_probs=31.6

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      ++.++|+|+|+|..|++++..+...|.+|.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            45568999999999999999999999999999975

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.37  E-value=0.0026  Score=40.31  Aligned_cols=32  Identities=28%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      ++++|+|+|.+|+-.++.++.+|.+|.++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            67999999999999999999999999999764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0029  Score=43.35  Aligned_cols=116  Identities=16%  Similarity=0.196  Sum_probs=73.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      .+.++.|+|.|.+|..++++++.+|++|+..++......     ....   ...+   ++++....|+++-+..-.+   
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-----~~~~---~~~~---l~ell~~sDii~i~~plt~~T~  111 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL-----GNAT---QVQH---LSDLLNMSDVVSLHVPENPSTK  111 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC-----TTCE---ECSC---HHHHHHHCSEEEECCCSSTTTT
T ss_pred             cceEEEEeecccchhhhhhhcccccceEeeccccccchh-----hhhh---hhhh---HHHHHhhccceeecccCCcchh
Confidence            578999999999999999999999999999987643211     1111   1112   2233345788887765332   


Q ss_pred             -c-HHHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE-EEEecccH
Q 027668          119 -P-LMPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI-EVIPADYV  192 (220)
Q Consensus       119 -~-~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~i  192 (220)
                       . -...++.++++..+|.++...-                        -+-+.+++++.++.+.... ++++-|..
T Consensus       112 ~li~~~~l~~mk~~a~lIN~aRG~l------------------------vde~aL~~aL~~~~~~~a~lDV~~~EP~  164 (188)
T d1sc6a1         112 NMMGAKEISLMKPGSLLINASRGTV------------------------VDIPALADALASKHLAGAAIDVFPTEPA  164 (188)
T ss_dssp             TCBCHHHHHHSCTTEEEEECSCSSS------------------------BCHHHHHHHHHTTSEEEEEEEC------
T ss_pred             hhccHHHHhhCCCCCEEEEcCcHHh------------------------hhhHHHHHHHHcCCceEEEEecCCCCCC
Confidence             1 2357788888888888765331                        1245677777788877554 77765543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0034  Score=39.91  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ++++|+|+|.+|+-++..++.+|.+|+++.+++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            789999999999999999999999999999875

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.32  E-value=0.0055  Score=41.22  Aligned_cols=95  Identities=20%  Similarity=0.210  Sum_probs=58.3

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC---CeEEEEeCCcccHHHHHH--HcC-------CcEE--------ec--------CCC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG---VKVTVISTSPSKKSEAVE--RLG-------ADSF--------LV--------SRD   96 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g---~~v~~~~~~~~~~~~~~~--~~g-------~~~v--------~~--------~~~   96 (220)
                      +|.|.|-|-+|.++.+.+....   .+++++.... ..+.++.  ++.       .+..        ++        ..+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~   80 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN   80 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT-CHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC-CHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCC
Confidence            5788999999999999776543   3666665553 3333322  121       1111        11        111


Q ss_pred             HHHHHHhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668           97 QDEMQAAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus        97 ~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ++.+.+...++|+|+||+|.-.....+..++..|.+-|++..+.
T Consensus        81 p~~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~  124 (172)
T d1rm4a1          81 PVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPG  124 (172)
T ss_dssp             GGGSCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCC
T ss_pred             hHHCChhhcCCCEEEecCceEccHHHHHHHHhcCCceEEeeccc
Confidence            22222222289999999999766777888898887677776654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.32  E-value=0.0025  Score=45.47  Aligned_cols=91  Identities=14%  Similarity=0.100  Sum_probs=57.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH---cCCc-EEecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER---LGAD-SFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~---~g~~-~v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      .++++||=+|||+ |..+..+++ .|.+++.++.+++.++.+.++   .|.. .++. .+.... ...+.||+|+...+.
T Consensus        36 ~~~~~vLDiGCG~-G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~-~d~~~~-~~~~~fD~i~~~~~~  111 (246)
T d1y8ca_          36 LVFDDYLDLACGT-GNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLAC-QDISNL-NINRKFDLITCCLDS  111 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEEC-CCGGGC-CCSCCEEEEEECTTG
T ss_pred             CCCCeEEEEeCcC-CHHHHHHHH-hCCccEeeccchhhhhhccccccccCccceeec-cchhhh-cccccccccceeeee
Confidence            4557899999874 776666665 578999999998876665432   2322 2222 222111 122479999854322


Q ss_pred             c----------ccHHHHHhccccCCEEEE
Q 027668          117 V----------HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus       117 ~----------~~~~~~~~~l~~~g~iv~  135 (220)
                      -          ..++.+.+.|++||.++.
T Consensus       112 ~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         112 TNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             GGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            1          135667888999999885

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.29  E-value=0.0034  Score=41.34  Aligned_cols=87  Identities=15%  Similarity=0.145  Sum_probs=53.7

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPLI  124 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~  124 (220)
                      +|-|+|.|.+|...++-+...|.++++..+.+.+...+ +..+.... +. .    .+.....|+||-|+........+.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~-~~~~~~~~-~~-~----~e~~~~~diIi~~v~~~~~~~~~~   74 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIE-RARTVGVT-ET-S----EEDVYSCPVVISAVTPGVALGAAR   74 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHH-HHHHHTCE-EC-C----HHHHHTSSEEEECSCGGGHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHH-hhhccccc-cc-H----HHHHhhcCeEEEEecCchHHHHHH
Confidence            57889999999999999999999998888776654333 22232222 11 1    122346889999888765443333


Q ss_pred             hccc-cCCEEEEecC
Q 027668          125 GLLK-SQGKLVLLGA  138 (220)
Q Consensus       125 ~~l~-~~g~iv~~g~  138 (220)
                      .... .+..++.+..
T Consensus        75 ~~~~~~~~~~id~st   89 (152)
T d1i36a2          75 RAGRHVRGIYVDINN   89 (152)
T ss_dssp             HHHTTCCSEEEECSC
T ss_pred             hhcccCCceeeccCc
Confidence            3222 2344444433

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.29  E-value=0.0035  Score=39.89  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=32.6

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      +..++++|+|+|.+|+-+++.++.+|.+|+++.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            345899999999999999999999999999998875

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.28  E-value=0.0029  Score=39.58  Aligned_cols=34  Identities=26%  Similarity=0.337  Sum_probs=31.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      ++++|+|+|.+|+-+++.++.+|.+|.++.+.+.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            7899999999999999999999999999988753

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.26  E-value=1.2e-06  Score=61.73  Aligned_cols=56  Identities=9%  Similarity=-0.023  Sum_probs=44.6

Q ss_pred             ceeeCCCCCCcccccccchhhhhhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC
Q 027668            7 FVVRIPEGAPLDATAPLLCAGITVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV   67 (220)
Q Consensus         7 ~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~   67 (220)
                      .+++||++.++.+++++.....++++++.... .+.+    ++|+|++|++++|.||.+|+
T Consensus       146 ~l~~iPd~~~~~~~~~~~~~~~~~~~a~~~~~-~~~g----~~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         146 NLLKLPDRDKAMEKINIAEVVGVQVISLDDAP-RGYG----EFDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             HCEECSCHHHHHHTCCHHHHHTEEEECGGGHH-HHHH----HHHHTCSCEEEECTTCSSCC
T ss_pred             eEEECCCCCChHHHHHHHHHHHHHHHHHHhCC-CCCe----EEeeCHHHHHHHHHHHHcCC
Confidence            68999998777777778778888888876654 3444    35899999999999999885

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.24  E-value=0.035  Score=35.91  Aligned_cols=70  Identities=17%  Similarity=0.200  Sum_probs=46.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc-------CCcEEecCCCHHHHHHhcCCccEEEEcC
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL-------GADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      .+|.|+|+|.+|..++..+...|.  +++.++..+++.+.....+       +...+....+.+.    ..+.|+|+-++
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~----~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI----CRDADMVVITA   77 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG----GTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH----hhCCcEEEEec
Confidence            468889999999999988888886  7888888776532211111       2233332333221    24789999999


Q ss_pred             CCc
Q 027668          115 SAV  117 (220)
Q Consensus       115 g~~  117 (220)
                      |.+
T Consensus        78 G~~   80 (143)
T d1llda1          78 GPR   80 (143)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            885

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.23  E-value=0.0026  Score=40.40  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=32.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      ..++++|+|+|.+|+-+++.++.+|.+|.++.+++.
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            347999999999999999999999999999988764

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=96.23  E-value=0.0035  Score=45.09  Aligned_cols=97  Identities=12%  Similarity=0.050  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEec--CCCHHHHHHhcCCccEEEEcCCCc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLV--SRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~--~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      ..++.+||=+|||. |..+..++...+.+|+.++.+++-.+.+.+.+......+  ..+.+...-..+.||+|+-.-.-.
T Consensus        91 ~~~~~~vLD~GcG~-G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~  169 (254)
T d1xtpa_          91 GHGTSRALDCGAGI-GRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             TCCCSEEEEETCTT-THHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCCeEEEecccC-ChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccceEEeecccc
Confidence            35678899999985 888888887766799999999988877766654321111  112111111113799998644322


Q ss_pred             c--------cHHHHHhccccCCEEEEec
Q 027668          118 H--------PLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       118 ~--------~~~~~~~~l~~~g~iv~~g  137 (220)
                      +        .++.+.+.|+++|.+++..
T Consensus       170 hl~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         170 YLTDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             GSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccchhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            1        2556778899999998754

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=96.22  E-value=0.0067  Score=43.23  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=35.3

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ++....--.|.+|+|.|.|.+|..+++++...|++|+.++.+.
T Consensus        22 ~~~~~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~   64 (242)
T d1v9la1          22 AKKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN   64 (242)
T ss_dssp             HHHHHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             HHHcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccc
Confidence            3333333578999999999999999999999999999888653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.21  E-value=0.0036  Score=46.27  Aligned_cols=36  Identities=33%  Similarity=0.364  Sum_probs=32.0

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ...++|+|+|+|+.|+.++..++..|.+|.+++..+
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            445789999999999999999999999999998764

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.21  E-value=0.039  Score=35.29  Aligned_cols=75  Identities=21%  Similarity=0.279  Sum_probs=45.4

Q ss_pred             EEEEEcC-chHHHHHHHHHHH-CCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           45 HVGVVGL-GGLGHVAVKFAKA-MGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~-~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      +|.|.|+ |-+|+.+++.... .++++.......+.....                    ...++|++||.+-.. ....
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~~~~--------------------~~~~~DvvIDFS~p~-~~~~   59 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPLSLL--------------------TDGNTEVVIDFTHPD-VVMG   59 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCTHHH--------------------HTTTCSEEEECCCTT-THHH
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCchhhh--------------------ccccCCEEEEcccHH-HHHH
Confidence            5889997 9999999887665 456776554433222211                    012577888877665 3555


Q ss_pred             HHhccccCCEEEEecCCC
Q 027668          123 LIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       123 ~~~~l~~~g~iv~~g~~~  140 (220)
                      .++.....|.=+.+|..+
T Consensus        60 ~~~~~~~~~~~~ViGTTG   77 (135)
T d1yl7a1          60 NLEFLIDNGIHAVVGTTG   77 (135)
T ss_dssp             HHHHHHHTTCEEEECCCC
T ss_pred             HHHHHHhcCCCEEEeccc
Confidence            555555555555555543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0038  Score=43.82  Aligned_cols=96  Identities=15%  Similarity=0.128  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC---CcE--EecCCCHHHHHHhcCCccEEEEcC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG---ADS--FLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g---~~~--v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      ..++.+||-+|||. |..+..+++..+.+|++++-+++..+.+.+.+.   ...  .+.. +...+....+.||+|+...
T Consensus        58 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~-d~~~~~~~~~~fD~I~~~~  135 (222)
T d2ex4a1          58 KTGTSCALDCGAGI-GRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCC-GLQDFTPEPDSYDVIWIQW  135 (222)
T ss_dssp             CCCCSEEEEETCTT-THHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEEC-CGGGCCCCSSCEEEEEEES
T ss_pred             CCCCCEEEEeccCC-CHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccc-ccccccccccccccccccc
Confidence            46778999999985 777777777777799999999987777755443   211  2222 2111111123799998643


Q ss_pred             CCc--------ccHHHHHhccccCCEEEEec
Q 027668          115 SAV--------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       115 g~~--------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      .-.        ..+..+.+.|+++|.++...
T Consensus       136 ~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         136 VIGHLTDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            221        13556777899999998764

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.19  E-value=0.0036  Score=46.51  Aligned_cols=35  Identities=23%  Similarity=0.263  Sum_probs=31.7

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .++|+|+|||..|+.++..+...|.+|.++.+++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            47899999999999999999999999999998763

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0042  Score=44.42  Aligned_cols=33  Identities=36%  Similarity=0.640  Sum_probs=29.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      +.+|+|+|+|++|..++..+...|. ++++++.+
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            3789999999999999999999999 77777764

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.18  E-value=0.012  Score=37.40  Aligned_cols=72  Identities=22%  Similarity=0.288  Sum_probs=46.4

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      +|.|+|+ |-+|+++.++++..|.+++.....+..                       +....+|++||.+.... ....
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-----------------------~~~~~~DVvIDFS~p~~-~~~~   57 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------------------EELDSPDVVIDFSSPEA-LPKT   57 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------------------EECSCCSEEEECSCGGG-HHHH
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-----------------------HHhccCCEEEEecCHHH-HHHH
Confidence            5889997 999999999999999877654322110                       00135788888887764 4555


Q ss_pred             HhccccCCEEEEecCCC
Q 027668          124 IGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       124 ~~~l~~~g~iv~~g~~~  140 (220)
                      ++.....+.=+.+|..+
T Consensus        58 l~~~~~~~~p~ViGTTG   74 (128)
T d1vm6a3          58 VDLCKKYRAGLVLGTTA   74 (128)
T ss_dssp             HHHHHHHTCEEEECCCS
T ss_pred             HHHHHhcCCCEEEEcCC
Confidence            55444445445555543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.17  E-value=0.0021  Score=46.92  Aligned_cols=33  Identities=15%  Similarity=0.385  Sum_probs=30.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .|+|+|+|+.|++++..++..|.+|.++++.++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            489999999999999999999999999998753

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=96.17  E-value=0.0054  Score=44.77  Aligned_cols=101  Identities=22%  Similarity=0.178  Sum_probs=65.3

Q ss_pred             HhccCCCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHHHc---CCcEEecCCCHHHHHHhcCCccE
Q 027668           35 RFYGLDKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVERL---GADSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        35 ~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~  109 (220)
                      .....+.+..+||=+|+|. |..+..+++..  |.+|+.++.++...+.+.+.+   +.+..+...+...+ ...+.||+
T Consensus        20 ~~~~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~-~~~~~fD~   97 (281)
T d2gh1a1          20 NTVWKITKPVHIVDYGCGY-GYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEI-ELNDKYDI   97 (281)
T ss_dssp             HTTSCCCSCCEEEEETCTT-THHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTC-CCSSCEEE
T ss_pred             HHHhccCCcCEEEEecCcC-CHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccc-cccCCceE
Confidence            3344456778999999984 88888888865  468999999988666654333   33322222221111 12247999


Q ss_pred             EEEcCCCc------ccHHHHHhccccCCEEEEec
Q 027668          110 IIDTVSAV------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       110 vid~~g~~------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      |+....-.      ..++.+.+.|++||.++...
T Consensus        98 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          98 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            98654321      23667888999999998765

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.17  E-value=0.08  Score=34.83  Aligned_cols=73  Identities=14%  Similarity=0.210  Sum_probs=49.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc-------CCcEEecCCCHHHHHHhcCCccEEE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL-------GADSFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      .+..+|.|+|+|.+|..++..+...|.  +++.++..+++.+-.+..+       +...+....+.+.    ..+.|+|+
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~----~~~adiVV   93 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSV----TANSKIVV   93 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGG----GTTCSEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhh----cccccEEE
Confidence            456799999999999999999999987  8888888765432211111       2222222332222    34899999


Q ss_pred             EcCCCc
Q 027668          112 DTVSAV  117 (220)
Q Consensus       112 d~~g~~  117 (220)
                      -++|.+
T Consensus        94 itAg~~   99 (160)
T d1i0za1          94 VTAGVR   99 (160)
T ss_dssp             ECCSCC
T ss_pred             EecCCc
Confidence            999886

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.15  E-value=0.0077  Score=44.74  Aligned_cols=74  Identities=12%  Similarity=0.143  Sum_probs=47.5

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc-----cHHHH---HHHcCC--cEE--ecCCCHHHHHHhcC--Ccc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS-----KKSEA---VERLGA--DSF--LVSRDQDEMQAAMG--TMD  108 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~-----~~~~~---~~~~g~--~~v--~~~~~~~~~~~~~~--~~d  108 (220)
                      +++||.|+ |-+|..++..+...|++|+++++...     +...+   ....+.  ...  .|..+.+.+.+...  ++|
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D   81 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD   81 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence            57899997 99999999999999999999998532     11111   011111  111  23334455554432  899


Q ss_pred             EEEEcCCCc
Q 027668          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~vid~~g~~  117 (220)
                      +||.+++..
T Consensus        82 ~Vih~Aa~~   90 (339)
T d1n7ha_          82 EVYNLAAQS   90 (339)
T ss_dssp             EEEECCSCC
T ss_pred             hhhhccccc
Confidence            999998764

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.14  E-value=0.0083  Score=42.12  Aligned_cols=92  Identities=15%  Similarity=0.137  Sum_probs=59.4

Q ss_pred             EEEEEcCchHHH-HHHHHHHHC-CCeEEE-EeCCcccHHHHHHHcCCc--EEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           45 HVGVVGLGGLGH-VAVKFAKAM-GVKVTV-ISTSPSKKSEAVERLGAD--SFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~g~~G~-~~~~~~~~~-g~~v~~-~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      +|.|+|+|.+|. ..+...+.. +.+++. +++++++.+.+.+++|..  .+..+.+.+.+-+ ...+|+|+-|+.....
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~-~~~iD~V~I~tp~~~H  113 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAK-DPKIDAVYIILPNSLH  113 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGG-CTTCCEEEECSCGGGH
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcc-cccceeeeeccchhhh
Confidence            678899999986 344444443 667774 455667778888888753  3333444332211 1279999999988766


Q ss_pred             HHHHHhccccCCEEEEecC
Q 027668          120 LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g~  138 (220)
                      ...+..+++.| +=+++.-
T Consensus       114 ~~~~~~al~~g-k~v~~EK  131 (221)
T d1h6da1         114 AEFAIRAFKAG-KHVMCEK  131 (221)
T ss_dssp             HHHHHHHHHTT-CEEEECS
T ss_pred             hhHHHHhhhcc-hhhhcCC
Confidence            77788888765 4445543

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.13  E-value=0.042  Score=35.40  Aligned_cols=69  Identities=16%  Similarity=0.246  Sum_probs=43.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHH------cCCcEEecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVER------LGADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~------~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      +|.|+|+|.+|..++..+...+.  ++...+..+++.+.....      +-....+...+.+    ...+.|+|+-|+|.
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~----~~~~adivvitag~   77 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYA----DLKGSDVVIVAAGV   77 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGG----GGTTCSEEEECCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHH----HhcCCCEEEEeccc
Confidence            57889999999998887777665  788888776643322111      1111112122221    23589999999987


Q ss_pred             c
Q 027668          117 V  117 (220)
Q Consensus       117 ~  117 (220)
                      +
T Consensus        78 ~   78 (140)
T d1a5za1          78 P   78 (140)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=96.12  E-value=0.0029  Score=45.38  Aligned_cols=96  Identities=17%  Similarity=0.113  Sum_probs=59.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CCc-EE-ecCCCH-HHHHHhcCCccEEEEc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GAD-SF-LVSRDQ-DEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~~-~v-~~~~~~-~~~~~~~~~~d~vid~  113 (220)
                      .+++++||=+|||. |..+..+++....+|+.++.+++..+.+.++.   +.. .+ +-..+. .......+.||+|+..
T Consensus        22 ~~~~~~VLDlGCG~-G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~  100 (252)
T d1ri5a_          22 TKRGDSVLDLGCGK-GGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  100 (252)
T ss_dssp             CCTTCEEEEETCTT-TTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCcCEEEEecccC-cHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEc
Confidence            47899999999875 66677777765558999999999877775432   321 11 111111 0000012369999754


Q ss_pred             CCCcc----------cHHHHHhccccCCEEEEe
Q 027668          114 VSAVH----------PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       114 ~g~~~----------~~~~~~~~l~~~g~iv~~  136 (220)
                      ..-..          .+..+.+.|++||.++..
T Consensus       101 ~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_         101 FSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             SCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            33211          234466789999998864

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.005  Score=46.00  Aligned_cols=73  Identities=11%  Similarity=0.030  Sum_probs=48.2

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCC-CeEEEEeCCcccHHHHHHHcCCcEEe-cCCC-HHHHHHhcCCccEEEEcCCCc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMG-VKVTVISTSPSKKSEAVERLGADSFL-VSRD-QDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~-~~~~~~~~~~~d~vid~~g~~  117 (220)
                      +|||.|+ |-+|..+++.+...| .+|+++++.......+.+.-+...+. |-.+ .+..+....++|+||-+++..
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~~   78 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIA   78 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccccc
Confidence            5899997 999999999888888 48999988766544442222233332 2222 233333445899999988764

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.09  E-value=0.0054  Score=40.51  Aligned_cols=74  Identities=14%  Similarity=0.141  Sum_probs=47.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHH-------cCCcE-EecCCCHHHHHHhcCCccEEE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVER-------LGADS-FLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~-------~g~~~-v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      ++..+|.|+|+|.+|..++.++...+. +++..+..+++.+.....       ++... +....+   ..+...+.|+|+
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~adiVv   81 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYS---YEAALTGADCVI   81 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECS---HHHHHTTCSEEE
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCc---hhhhhcCCCeEE
Confidence            556889999999999999888888886 888888776643332222       12111 111111   122335789999


Q ss_pred             EcCCCc
Q 027668          112 DTVSAV  117 (220)
Q Consensus       112 d~~g~~  117 (220)
                      -++|.+
T Consensus        82 itag~~   87 (154)
T d1pzga1          82 VTAGLT   87 (154)
T ss_dssp             ECCSCS
T ss_pred             Eecccc
Confidence            888754

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.09  E-value=0.014  Score=42.27  Aligned_cols=74  Identities=19%  Similarity=0.289  Sum_probs=50.2

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHH------H--HHHcCCcEEe-cCCCHHHHHHhcCCccEEEEc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSE------A--VERLGADSFL-VSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~------~--~~~~g~~~v~-~~~~~~~~~~~~~~~d~vid~  113 (220)
                      ++|||.|+ |-+|..++..+...|.+|+++++.......      .  ....+.+.+. |..+.....+...+.+.++.+
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~~   83 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIST   83 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeeec
Confidence            67999997 999999999999999999999987543111      1  1122344332 333444444545578888888


Q ss_pred             CCCc
Q 027668          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      .+..
T Consensus        84 ~~~~   87 (307)
T d1qyca_          84 VGSL   87 (307)
T ss_dssp             CCGG
T ss_pred             cccc
Confidence            7764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.08  E-value=0.062  Score=34.72  Aligned_cols=71  Identities=14%  Similarity=0.215  Sum_probs=45.2

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcCC---c--EEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGA---D--SFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g~---~--~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      .+|.|+|| |.+|..++.++...|.  ++..++..+.+- ++..-.-.   .  ..+..  .....+...+.|+|+-+.|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~-~a~Dl~~~~~~~~~~~~~~--~~~~~~~~~~aDivVitag   77 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-VAADLSHIETRATVKGYLG--PEQLPDCLKGCDVVVIPAG   77 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-HHHHHTTSSSSCEEEEEES--GGGHHHHHTTCSEEEECCS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch-hhHHHhhhhhhcCCCeEEc--CCChHHHhCCCCEEEECCC
Confidence            36899996 9999999999998887  788888765432 23221111   1  11111  1222233468999999988


Q ss_pred             Cc
Q 027668          116 AV  117 (220)
Q Consensus       116 ~~  117 (220)
                      .+
T Consensus        78 ~~   79 (144)
T d1mlda1          78 VP   79 (144)
T ss_dssp             CC
T ss_pred             cC
Confidence            64

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.06  E-value=0.033  Score=36.21  Aligned_cols=71  Identities=15%  Similarity=0.191  Sum_probs=46.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc-------CCcEEecCCCHHHHHHhcCCccEEEE
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL-------GADSFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      ...+|.|+|+|.+|..++..+...|.  +++.++..+++.+.....+       +...+. ..+.+.    ..+.|+|+-
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~-~~d~~~----~~~adivvi   78 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY-SGEYSD----CKDADLVVI   78 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE-ECCGGG----GTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEe-eccHHH----hccccEEEE
Confidence            34689999999999999988888774  8999998876433221111       122222 223222    248999999


Q ss_pred             cCCCc
Q 027668          113 TVSAV  117 (220)
Q Consensus       113 ~~g~~  117 (220)
                      ++|.+
T Consensus        79 tag~~   83 (146)
T d1ez4a1          79 TAGAP   83 (146)
T ss_dssp             CCCC-
T ss_pred             ecccc
Confidence            99875

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.024  Score=40.02  Aligned_cols=125  Identities=16%  Similarity=0.166  Sum_probs=67.7

Q ss_pred             hhHhccCCCCCCEEEEEcCchHHHHHHHHH-HHCCCeEEEEeCCcc-----------cHHHHHHHcCCcEEecCCCHHHH
Q 027668           33 PLRFYGLDKPGMHVGVVGLGGLGHVAVKFA-KAMGVKVTVISTSPS-----------KKSEAVERLGADSFLVSRDQDEM  100 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~-~~~g~~v~~~~~~~~-----------~~~~~~~~~g~~~v~~~~~~~~~  100 (220)
                      +++..+.--.|.+|+|.|.|.+|..+++.+ +..|++++.++.+..           .+....++.+....+...+.-..
T Consensus        21 ~~~~~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~  100 (234)
T d1b26a1          21 AMDVLGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITN  100 (234)
T ss_dssp             HHHHTTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECH
T ss_pred             HHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeecc
Confidence            344444334689999999999999999987 578999998875431           22233223231100000000001


Q ss_pred             HHhcC-CccEEEEcCCCcccHHHHHhccccCCEEEEecCCCCCcccCccc-cccCCcEEEEe
Q 027668          101 QAAMG-TMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPEKPLELPAFP-LLTGEKIVGGS  160 (220)
Q Consensus       101 ~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~~~~~~~~~~-~~~~~~~i~~~  160 (220)
                      .++.. ..|+.+=|+.....-......++..  + .++.-+.+.+..... +..+++.+.+-
T Consensus       101 ~~~~~~~~DI~~PcA~~~~I~~~~a~~l~~~--~-I~e~AN~p~t~~a~~~L~~rgI~~~PD  159 (234)
T d1b26a1         101 EELLELDVDILVPAALEGAIHAGNAERIKAK--A-VVEGANGPTTPEADEILSRRGILVVPD  159 (234)
T ss_dssp             HHHHTSCCSEEEECSCTTCBCHHHHTTCCCS--E-EECCSSSCBCHHHHHHHHHTTCEEECH
T ss_pred             ccccccccceeecchhcccccHHHHHHhhhc--e-EeecCCCCCCHHHHHHHHHCCeEEech
Confidence            12223 7899998886664445566666543  3 333334333322222 34556666653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0071  Score=44.76  Aligned_cols=100  Identities=18%  Similarity=0.091  Sum_probs=54.4

Q ss_pred             hhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHH--HHHHHcCC---cEEecCCCHHHHHHhcC
Q 027668           32 SPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKS--EAVERLGA---DSFLVSRDQDEMQAAMG  105 (220)
Q Consensus        32 ~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~--~~~~~~g~---~~v~~~~~~~~~~~~~~  105 (220)
                      .++.+...+.+|++||-+|+| .|..++.+++ .|+ +|++++.++....  +..++.+.   -.++..+ ...+....+
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG-~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~-~~~l~~~~~  101 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCG-TGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK-IEEVHLPVE  101 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCT-TSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESC-TTTSCCSCS
T ss_pred             HHHHhccccCCcCEEEEECCC-CCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEee-HHHhcCccc
Confidence            345444445789999999987 4666665555 576 8999988865321  11223332   1222222 111111123


Q ss_pred             CccEEEEc-CCC----cccHHH----HHhccccCCEEE
Q 027668          106 TMDGIIDT-VSA----VHPLMP----LIGLLKSQGKLV  134 (220)
Q Consensus       106 ~~d~vid~-~g~----~~~~~~----~~~~l~~~g~iv  134 (220)
                      .+|+|+.. .+.    ...+..    .-+.|+|+|+++
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            79999852 222    111222    234689999886

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.02  E-value=0.023  Score=35.96  Aligned_cols=91  Identities=13%  Similarity=0.144  Sum_probs=60.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEe-cCCCHHHHHHhc-CCccEEEEcCCCccc--
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFL-VSRDQDEMQAAM-GTMDGIIDTVSAVHP--  119 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~-~~~~~~~~~~~~-~~~d~vid~~g~~~~--  119 (220)
                      ++++|+|.|.+|+.+++.++  |.++++++.++++.+.+ +..|...++ |..+++.+++.. +.++.++-+......  
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~-~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~   77 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKV-LRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETI   77 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHH-HHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHH-HhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhH
Confidence            35889999999999988764  55678888888877666 567776554 444556555543 489999988876532  


Q ss_pred             -HHHHHhccccCCEEEEec
Q 027668          120 -LMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       120 -~~~~~~~l~~~g~iv~~g  137 (220)
                       +....+.+.+..+++...
T Consensus        78 ~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          78 HCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             HHHHHHHHHCSSSCEEEEC
T ss_pred             HHHHHHHHHCCCceEEEEE
Confidence             122334455665555443

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.01  E-value=0.009  Score=44.72  Aligned_cols=94  Identities=14%  Similarity=0.178  Sum_probs=65.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHH-HHCCC-eEEEEeCCcccHHHHHHHcC----CcEEecCCCHHHHHHhcCCccEEEEcC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFA-KAMGV-KVTVISTSPSKKSEAVERLG----ADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~-~~~g~-~v~~~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      +..+++.|+|+|..+..-++.+ ..++. +|.+.++++++.+.+.+++.    ..... ..   ..++...+.|+|+-|+
T Consensus       126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~-~~---s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         126 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRR-AS---SVAEAVKGVDIITTVT  201 (340)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEE-CS---SHHHHHTTCSEEEECC
T ss_pred             cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCcee-cC---CHHHHHhcCCceeecc
Confidence            4457889999999998777744 56777 89999999888777766553    23222 22   2344456899999877


Q ss_pred             CCcc---cHHHHHhccccCCEEEEecCCC
Q 027668          115 SAVH---PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       115 g~~~---~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ....   .+.  -..+++|-++..+|...
T Consensus       202 as~s~~Pv~~--~~~l~pG~hI~aiGs~~  228 (340)
T d1x7da_         202 ADKAYATIIT--PDMLEPGMHLNAVGGDC  228 (340)
T ss_dssp             CCSSEEEEEC--GGGCCTTCEEEECSCCB
T ss_pred             ccCCCCcccc--hhhcCCCCEEeecccch
Confidence            5532   222  35689999999998764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.98  E-value=0.0059  Score=38.54  Aligned_cols=36  Identities=17%  Similarity=0.157  Sum_probs=32.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      +++++++|+|+|.+|+-++..+...|.+|+++.+.+
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            455889999999999999999999999999998765

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=95.98  E-value=0.0089  Score=45.04  Aligned_cols=74  Identities=14%  Similarity=0.111  Sum_probs=45.8

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-----HHHHHHH---cCCcE-E--ecCCCHHHHHHhcC--CccE
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-----KSEAVER---LGADS-F--LVSRDQDEMQAAMG--TMDG  109 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-----~~~~~~~---~g~~~-v--~~~~~~~~~~~~~~--~~d~  109 (220)
                      +.|||.|+ |-+|..++..+...|.+|+++++....     .+.+...   ..... .  .|-.+.+.+.+...  .+|+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   81 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE   81 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence            57889997 999999999999999999999985431     1111111   11111 1  12345566655554  7899


Q ss_pred             EEEcCCCc
Q 027668          110 IIDTVSAV  117 (220)
Q Consensus       110 vid~~g~~  117 (220)
                      ||.+++..
T Consensus        82 v~h~aa~~   89 (357)
T d1db3a_          82 VYNLGAMS   89 (357)
T ss_dssp             EEECCCCC
T ss_pred             EEEeeccc
Confidence            99998653

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=95.95  E-value=0.014  Score=42.41  Aligned_cols=96  Identities=23%  Similarity=0.190  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHc----CC-----cEEecCCCHHHHHHhcCCccEE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL----GA-----DSFLVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~----g~-----~~v~~~~~~~~~~~~~~~~d~v  110 (220)
                      ..-++|||+|+|. |..+..+++..+. +|.+++-+++-.+.+.+-+    ++     -.++..+....+++..+.+|+|
T Consensus        74 ~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          74 PNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            3448999998764 5555666776665 8888888877554443222    21     1233333345555544589999


Q ss_pred             E-EcCCC---c------ccHHHHHhccccCCEEEEec
Q 027668          111 I-DTVSA---V------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       111 i-d~~g~---~------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      | |....   +      +-++.+-+.|+++|.++.-.
T Consensus       153 i~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         153 MVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             EESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            7 43221   1      12567888999999998653

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.016  Score=43.24  Aligned_cols=74  Identities=15%  Similarity=0.116  Sum_probs=49.0

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc----HHHHH--HHcCCcEE-ecCCCHHHHHHhcC--CccEEEEc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK----KSEAV--ERLGADSF-LVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~----~~~~~--~~~g~~~v-~~~~~~~~~~~~~~--~~d~vid~  113 (220)
                      +.|||.|+ |-+|..++..+...|.+|+++++....    .....  ..-+...+ .|-.+.+.++....  ++|+||.+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   81 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence            56899997 999999999999999999998653221    11111  11123322 24455666655443  89999998


Q ss_pred             CCCc
Q 027668          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      ++..
T Consensus        82 Aa~~   85 (347)
T d1z45a2          82 AGLK   85 (347)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            8764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.013  Score=37.07  Aligned_cols=85  Identities=16%  Similarity=0.230  Sum_probs=57.9

Q ss_pred             CCCCEEEEEcCchH-----------HHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-CcEEec-CCCHHHHHHhcC--
Q 027668           41 KPGMHVGVVGLGGL-----------GHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADSFLV-SRDQDEMQAAMG--  105 (220)
Q Consensus        41 ~~~~~vlI~G~g~~-----------G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~~~v~~-~~~~~~~~~~~~--  105 (220)
                      ..-++|||+|+|+.           +..++.-++..|.+++.+..+++....   .+. ++.++. +-..+.+.++..  
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVst---d~d~aD~lYfePlt~e~v~~Ii~~E   81 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMT---DPEMADATYIEPIHWEVVRKIIEKE   81 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGG---CGGGSSEEECSCCCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhc---ChhhcceeeeecCCHHHHHHHHHHh
Confidence            34578999998752           355666667789999999999886432   233 455543 334566666554  


Q ss_pred             CccEEEEcCCCcccHHHHHhccc
Q 027668          106 TMDGIIDTVSAVHPLMPLIGLLK  128 (220)
Q Consensus       106 ~~d~vid~~g~~~~~~~~~~~l~  128 (220)
                      ++|.|+-..|+.-.++.++++.+
T Consensus        82 ~pd~il~~~GGQtalnla~~L~~  104 (127)
T d1a9xa3          82 RPDAVLPTMGGQTALNCALELER  104 (127)
T ss_dssp             CCSEEECSSSHHHHHHHHHHHHH
T ss_pred             CcCCeEEEeeeehHhHHHHHHHH
Confidence            89999999998765666666544

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.89  E-value=0.014  Score=37.93  Aligned_cols=70  Identities=19%  Similarity=0.166  Sum_probs=42.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcC-C-----cEEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLG-A-----DSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g-~-----~~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      .+|.|+|+|.+|..++..+...+.  ++..++..+++.+....++. +     ...+...+.    +...+.|+|+-++|
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~----~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDY----SDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CG----GGGTTCSEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcH----HHhCCCceEEEecc
Confidence            367888999999999988888876  89998887765322222222 1     111111111    12348999999988


Q ss_pred             Cc
Q 027668          116 AV  117 (220)
Q Consensus       116 ~~  117 (220)
                      .+
T Consensus        78 ~~   79 (142)
T d1y6ja1          78 AN   79 (142)
T ss_dssp             C-
T ss_pred             cc
Confidence            75

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.88  E-value=0.0057  Score=43.99  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=29.3

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~   77 (220)
                      .|+|+|+|+.|++++..++..|. +|.++.+++.
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            58999999999999999999997 8888888654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0063  Score=45.00  Aligned_cols=36  Identities=25%  Similarity=0.362  Sum_probs=31.8

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ++..+|+|+|+|..|+.++..++..|.+|.+...++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            455789999999999999999999999999988764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.86  E-value=0.031  Score=40.96  Aligned_cols=73  Identities=18%  Similarity=0.129  Sum_probs=48.2

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc--HHHHHHHcCCc-----EEecCCCHHHHHHhcC--CccEEEEc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK--KSEAVERLGAD-----SFLVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~--~~~~~~~~g~~-----~v~~~~~~~~~~~~~~--~~d~vid~  113 (220)
                      ++|||.|+ |-+|..++..+...|++|+++++....  ...+ +.++.+     .-.|-.+.+.+.+...  ..++++.+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l-~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRL-RELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHH-HHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHH-HHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence            57999997 999999999998899999999986542  2223 334421     1124445555544332  66777777


Q ss_pred             CCCc
Q 027668          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      +...
T Consensus        80 a~~~   83 (321)
T d1rpna_          80 AAQS   83 (321)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            6553

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.84  E-value=0.0045  Score=43.83  Aligned_cols=36  Identities=31%  Similarity=0.304  Sum_probs=32.0

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~   78 (220)
                      ++++||.|+ +++|.++++.+...|++|++++++++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            467899997 899999999999999999999988764

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=95.83  E-value=0.027  Score=41.96  Aligned_cols=74  Identities=18%  Similarity=0.100  Sum_probs=50.5

Q ss_pred             CCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHH--HHHHHcCCcEEe-cCCC-HHHHHHhcCCccEEEEcCC
Q 027668           42 PGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKS--EAVERLGADSFL-VSRD-QDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        42 ~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~--~~~~~~g~~~v~-~~~~-~~~~~~~~~~~d~vid~~g  115 (220)
                      +.++|+|.|+ |.+|..++..+...|.+|+++.++..+..  .+...-|++.+. |..+ .+.++....+.|.++....
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~   80 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT   80 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecc
Confidence            4578999997 99999999999999999999999765432  221112444332 2223 4455666678888876544

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=95.74  E-value=0.0059  Score=43.35  Aligned_cols=32  Identities=28%  Similarity=0.277  Sum_probs=29.1

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      |+|+|+|+.|+.++..+...|.+|.++++.+.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            68899999999999999999999999998764

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.71  E-value=0.0061  Score=40.91  Aligned_cols=83  Identities=13%  Similarity=0.128  Sum_probs=56.0

Q ss_pred             EEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMPL  123 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~  123 (220)
                      +|.|+|+|.+|...+..++.. +++++.+.....+..      ....+....+   .....+.+|+|+.|++.....+.+
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~------~~~~~~~~~~---~~~~~~~~D~Vvi~tp~~~h~~~a   75 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD------TKTPVFDVAD---VDKHADDVDVLFLCMGSATDIPEQ   75 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS------SSSCEEEGGG---GGGTTTTCSEEEECSCTTTHHHHH
T ss_pred             eEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccc------cccccccchh---hhhhccccceEEEeCCCcccHHHH
Confidence            588999999999888888765 557776655543211      1111222222   222335799999999888667889


Q ss_pred             HhccccCCEEEEe
Q 027668          124 IGLLKSQGKLVLL  136 (220)
Q Consensus       124 ~~~l~~~g~iv~~  136 (220)
                      .++|+.|-.++..
T Consensus        76 ~~aL~aG~~vv~~   88 (170)
T d1f06a1          76 APKFAQFACTVDT   88 (170)
T ss_dssp             HHHHTTTSEEECC
T ss_pred             HHHHHCCCcEEEe
Confidence            9999988887653

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.71  E-value=0.11  Score=33.47  Aligned_cols=69  Identities=12%  Similarity=0.136  Sum_probs=45.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHH-------HHcCC-cEEecCCCHHHHHHhcCCccEEEEcC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAV-------ERLGA-DSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~-------~~~g~-~~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      +|.|+|+|.+|..++..+...|.  ++..++..+++.+-..       ..++. ..+....+.+    ...+.|+|+-++
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~----~~~~adiVvita   77 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS----LLKGSEIIVVTA   77 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGG----GGTTCSEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHH----HhccccEEEEec
Confidence            57889999999999988887775  7888887776532211       11222 2343333332    235899999998


Q ss_pred             CCc
Q 027668          115 SAV  117 (220)
Q Consensus       115 g~~  117 (220)
                      |.+
T Consensus        78 g~~   80 (142)
T d1ojua1          78 GLA   80 (142)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            864

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.66  E-value=0.022  Score=42.36  Aligned_cols=99  Identities=26%  Similarity=0.246  Sum_probs=60.8

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH---HcCCc---EEecCCCHHHHHHh---cCCccE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAA---MGTMDG  109 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~---~~~~d~  109 (220)
                      +++|++||=.++|+ |..++.+++ .|+ +|+.++.++...+.+.+   ..|..   .++..+-.+.....   ...||+
T Consensus       143 ~~~g~~VLDl~~g~-G~~si~~a~-~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~  220 (324)
T d2as0a2         143 VQPGDRVLDVFTYT-GGFAIHAAI-AGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDI  220 (324)
T ss_dssp             CCTTCEEEETTCTT-THHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             cCCCCeeecccCcc-cchhhhhhh-cCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCc
Confidence            58899999887643 334444444 466 89999999887665533   33431   23333323433332   237999


Q ss_pred             EEEcCCC---c------------ccHHHHHhccccCCEEEEecCCC
Q 027668          110 IIDTVSA---V------------HPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       110 vid~~g~---~------------~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      |+--...   .            ..+..+++.+++||.++.+....
T Consensus       221 Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         221 VVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             EEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             hhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            9842221   1            13456788999999999886543

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.65  E-value=0.0067  Score=43.34  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=30.0

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCccc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~   78 (220)
                      |+|+|+|+.|++++..+...|.+|.++++.+.-
T Consensus         7 ViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           7 NIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            788999999999999999999999999988653

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.0094  Score=39.96  Aligned_cols=99  Identities=13%  Similarity=0.057  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHH--cCCcEEe--cCCCHHHHHHhcCCccEEEEcCC
Q 027668           41 KPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVER--LGADSFL--VSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~--~g~~~v~--~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      -.|++|+|+|. ..+|.=++.++...|+.|+.+.............  .-...+-  .....+.+++.....|++|-++|
T Consensus        27 l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG  106 (171)
T d1edza1          27 LYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVP  106 (171)
T ss_dssp             TTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEccC
Confidence            57899999996 6889999999999999998776554321000000  0011111  11224556655557999999999


Q ss_pred             CcccHHHHHhccccCCEEEEecCCC
Q 027668          116 AVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .+. +..--+.+++|..++.+|...
T Consensus       107 ~p~-~~i~~d~ik~GavvIDvGi~~  130 (171)
T d1edza1         107 SEN-YKFPTEYIKEGAVCINFACTK  130 (171)
T ss_dssp             CTT-CCBCTTTSCTTEEEEECSSSC
T ss_pred             CCc-cccChhhcccCceEeeccccc
Confidence            875 222335678888888888653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.60  E-value=0.0052  Score=42.18  Aligned_cols=96  Identities=16%  Similarity=0.068  Sum_probs=58.2

Q ss_pred             HhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCC---c-EEecCCCHHHHHHhc-CC
Q 027668           35 RFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGA---D-SFLVSRDQDEMQAAM-GT  106 (220)
Q Consensus        35 ~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~---~-~v~~~~~~~~~~~~~-~~  106 (220)
                      ..+. ..++++||-+|+|. |..++.+++ .+.+|++++.++...+.+.+   ..+.   . .++..+..+   ... +.
T Consensus        46 ~~l~-~~~~~~VLDiGcG~-G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~---~~~~~~  119 (194)
T d1dusa_          46 ENVV-VDKDDDILDLGCGY-GVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE---NVKDRK  119 (194)
T ss_dssp             HHCC-CCTTCEEEEETCTT-SHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT---TCTTSC
T ss_pred             HhCC-cCCCCeEEEEeecC-ChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh---hhccCC
Confidence            3443 68899999999864 555665554 56799999999876655533   2232   1 222222111   122 37


Q ss_pred             ccEEEEcCCC---cc----cHHHHHhccccCCEEEEe
Q 027668          107 MDGIIDTVSA---VH----PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       107 ~d~vid~~g~---~~----~~~~~~~~l~~~g~iv~~  136 (220)
                      ||+|+-....   .+    .++.+.+.|+++|.++..
T Consensus       120 fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         120 YNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             EEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            9999853221   11    245677889999998653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0071  Score=40.74  Aligned_cols=30  Identities=23%  Similarity=0.441  Sum_probs=27.4

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      |+|+|+|+.|+.++..+...|.+|.++.+.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            788999999999999999999999998753

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.59  E-value=0.009  Score=39.88  Aligned_cols=35  Identities=37%  Similarity=0.435  Sum_probs=29.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~   76 (220)
                      .|++|+|+|+|..|+.+++.++..+.  +|+++.+.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            37899999999999999998888775  788887664

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.59  E-value=0.0065  Score=43.18  Aligned_cols=32  Identities=28%  Similarity=0.366  Sum_probs=28.5

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~   76 (220)
                      .|+|+|+|+.|+.++..++..|. +|+++.+++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            48999999999999999999997 699988764

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.58  E-value=0.1  Score=33.44  Aligned_cols=69  Identities=13%  Similarity=0.101  Sum_probs=44.8

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc-------CC-cEEecCCCHHHHHHhcCCccEEEEcC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL-------GA-DSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~-------g~-~~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      +|.|+|+|.+|..++..+...|.  ++...+..+++.+.....+       +. ..+....+.+    ...+.|+++-++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~----~~~dadvvvita   77 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYA----DTANSDIVIITA   77 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGG----GGTTCSEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHH----HhcCCeEEEEEE
Confidence            57889999999999998888885  8888887776533221111       11 2222222222    234899999999


Q ss_pred             CCc
Q 027668          115 SAV  117 (220)
Q Consensus       115 g~~  117 (220)
                      |.+
T Consensus        78 g~~   80 (142)
T d1guza1          78 GLP   80 (142)
T ss_dssp             SCC
T ss_pred             ecC
Confidence            864

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=95.52  E-value=0.034  Score=41.03  Aligned_cols=94  Identities=17%  Similarity=0.169  Sum_probs=58.0

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHc-----CC-----cEEecCCCHHHHHHhcCCccE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL-----GA-----DSFLVSRDQDEMQAAMGTMDG  109 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~-----g~-----~~v~~~~~~~~~~~~~~~~d~  109 (220)
                      ..-++|||+|+|. |..+-.+++..+. +|.++.-+++-.+.+.+-|     +.     -.++..+-.+.+++..+.+|+
T Consensus        76 ~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          76 PEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            3447999998764 5555666666554 8999998887555443333     11     123333334555554458999


Q ss_pred             EE-EcC---CCc---------ccHHHHHhccccCCEEEE
Q 027668          110 II-DTV---SAV---------HPLMPLIGLLKSQGKLVL  135 (220)
Q Consensus       110 vi-d~~---g~~---------~~~~~~~~~l~~~g~iv~  135 (220)
                      || |..   +..         +-++.+.+.|+++|.++.
T Consensus       155 Ii~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~  193 (312)
T d1uira_         155 VIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM  193 (312)
T ss_dssp             EEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred             EEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence            97 442   211         124567889999999875

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.51  E-value=0.006  Score=44.21  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=29.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      .|+|+|+|+.|+.++..+...|.+|+++.+++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            48999999999999999999999999998764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=95.49  E-value=0.01  Score=42.47  Aligned_cols=97  Identities=23%  Similarity=0.185  Sum_probs=58.8

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHH---HHcCC-cEE-ecCCCHHHHHHhcCCccEEEE
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAV---ERLGA-DSF-LVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~---~~~g~-~~v-~~~~~~~~~~~~~~~~d~vid  112 (220)
                      .+.+..+||=+|+|. |..+..+++.. +.++++++.+ +..+.+.   .+.|. +.+ +...+  .......++|+|+-
T Consensus        77 d~~~~~~VLDvGcG~-G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~rv~~~~~D--~~~~~~~~~D~v~~  152 (253)
T d1tw3a2          77 DWTNVRHVLDVGGGK-GGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKDEGLSDRVDVVEGD--FFEPLPRKADAIIL  152 (253)
T ss_dssp             CCTTCSEEEEETCTT-SHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHHTTCTTTEEEEECC--TTSCCSSCEEEEEE
T ss_pred             CCccCCEEEEeCCCC-CHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHHhhcccchhhcccc--chhhcccchhheee
Confidence            367778999999874 88888999887 4588888864 3333332   23332 111 11111  11112237899885


Q ss_pred             cCCC-----c---ccHHHHHhccccCCEEEEecCC
Q 027668          113 TVSA-----V---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       113 ~~g~-----~---~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ...-     .   ..++.+.+.|+|||++++....
T Consensus       153 ~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             ESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            4321     1   1356688899999999987653

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.49  E-value=0.023  Score=37.32  Aligned_cols=135  Identities=13%  Similarity=0.104  Sum_probs=72.9

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCC---eEEEEeCCcccHHHHHHHcCCcE--EecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGV---KVTVISTSPSKKSEAVERLGADS--FLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~---~v~~~~~~~~~~~~~~~~~g~~~--v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      |-+|.|+|+ |-+|+-+++++..+..   ++.....+...-...  .+....  ..+..+     ......|++|-+.+.
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~--~~~~~~~~~~~~~~-----~~~~~~d~~f~~~~~   73 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL--KFKDQDITIEETTE-----TAFEGVDIALFSAGS   73 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE--EETTEEEEEEECCT-----TTTTTCSEEEECSCH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc--cccCCcccccccch-----hhhhhhhhhhhccCc
Confidence            347899998 9999999999988853   454444332211100  011111  111111     112378999999988


Q ss_pred             cccHHHHHhccccCCEEEEecCCCC---CcccCcccc----ccCCcEEEEeeccCHHHHHHHHHHHHhCCcceeE
Q 027668          117 VHPLMPLIGLLKSQGKLVLLGAPEK---PLELPAFPL----LTGEKIVGGSLIGGLKETQEMIDFAAKHNIRADI  184 (220)
Q Consensus       117 ~~~~~~~~~~l~~~g~iv~~g~~~~---~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i  184 (220)
                      ....+..-+....+-+++..+..-.   ..+.-.+++    ..+...+..........+.-+..++++|.+++..
T Consensus        74 ~~s~~~~~~~~~~~~~VIDlSsdfR~~~~~~~~~pe~n~~~~~~~~~iIAnPgC~tt~i~~l~PL~~~~lik~~~  148 (154)
T d2gz1a1          74 STSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIACPNAAWNSVQIAETLHERGLVRPTA  148 (154)
T ss_dssp             HHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGCCSEEECCCTHHHHHHHHHHHHHTTCCSCCS
T ss_pred             cchhhHHhhhccccceehhcChhhhccCCcccccchhhHHHhcCcCceEECCCCHHHHHHHHHHHHHhcCCCccc
Confidence            7555556666777888887765321   112222222    1122233333222233345567888888887653

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.48  E-value=0.078  Score=37.09  Aligned_cols=98  Identities=17%  Similarity=0.141  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHH---HcCCc---EEecCCCHHHHHHh------cCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAA------MGT  106 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~------~~~  106 (220)
                      ..-++||-+|.+ +|..++.+++.+  +.+++.++.+++..+.+.+   +.|..   .++.....+.+.++      .+.
T Consensus        58 ~~~k~iLEiGT~-~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          58 INAKNTMEIGVY-TGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HTCCEEEEECCG-GGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             cCCCcEEEecch-hhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            445889999975 377777888776  4599999998876555433   34542   22333334555554      237


Q ss_pred             ccEEE-EcCCCc--ccHHHHHhccccCCEEEEecCC
Q 027668          107 MDGII-DTVSAV--HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       107 ~d~vi-d~~g~~--~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      ||+|| |+--..  ..++.+++.|++||.++.=...
T Consensus       137 fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl  172 (227)
T d1susa1         137 YDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTL  172 (227)
T ss_dssp             BSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred             eeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCC
Confidence            99997 443221  2467789999999999876544

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.47  E-value=0.011  Score=40.95  Aligned_cols=67  Identities=13%  Similarity=0.035  Sum_probs=43.1

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHH-HHhcCCccEEEEcCCCc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERLGADSFLVSRDQDEM-QAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~-~~~~~~~d~vid~~g~~  117 (220)
                      ++|||.|+ |-+|..+++.+...|.  +|++..+++....       ...-....+.... ....+.+|.||.|+|..
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~-------~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH-------PRLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC-------TTEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc-------ccccccccchhhhhhccccchheeeeeeeee
Confidence            78999998 9999999999888887  6666665532210       1111122232222 23334789999998874

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0063  Score=44.76  Aligned_cols=33  Identities=30%  Similarity=0.320  Sum_probs=29.5

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      -|+|+|||..|+.++..+...|.+|.++.+++.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            378999999999999999989999999998753

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.46  E-value=0.0075  Score=41.90  Aligned_cols=31  Identities=35%  Similarity=0.362  Sum_probs=28.2

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+|+.|+.++..+...|.+|.++++.+
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            6788999999999999999999999998754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=95.46  E-value=0.041  Score=37.66  Aligned_cols=73  Identities=25%  Similarity=0.296  Sum_probs=47.1

Q ss_pred             hHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEE
Q 027668           34 LRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        34 l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      +...+. -.|++||=+|+|+ |..++. +..+|+ +|+.++.+++..+.+.+......++..+    +.++.+.||+||-
T Consensus        41 ~~~~~d-l~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D----~~~l~~~fD~Vi~  113 (197)
T d1ne2a_          41 IYNDGN-IGGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVAD----VSEISGKYDTWIM  113 (197)
T ss_dssp             HHHHTS-SBTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECC----GGGCCCCEEEEEE
T ss_pred             HHHcCC-CCCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEEe----hhhcCCcceEEEe
Confidence            344454 4689999999864 544443 445676 7999999988877775555433344332    2234458999985


Q ss_pred             c
Q 027668          113 T  113 (220)
Q Consensus       113 ~  113 (220)
                      .
T Consensus       114 N  114 (197)
T d1ne2a_         114 N  114 (197)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.023  Score=41.40  Aligned_cols=95  Identities=21%  Similarity=0.176  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcC---------CcEEecCCCHHHHHHhcCCccEEE
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG---------ADSFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g---------~~~v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      .-++|||+|+|. |..+-.+++..+. +++++.-+++-.+.+.+-|.         -..++..+....+++..+.+|+||
T Consensus        78 ~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          78 NPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            347899998754 4555566676665 88888888765544432221         112332222345544445899997


Q ss_pred             -EcCCCc---------ccHHHHHhccccCCEEEEec
Q 027668          112 -DTVSAV---------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       112 -d~~g~~---------~~~~~~~~~l~~~g~iv~~g  137 (220)
                       |.....         +-++.+-+.|+++|.++.-.
T Consensus       157 ~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         157 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence             443211         12566778899999998643

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=95.40  E-value=0.0043  Score=42.34  Aligned_cols=35  Identities=17%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ++..|+|+|+|+.|+.++..+...|.+|+++.+..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            34579999999999999999999999999987543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.38  E-value=0.0091  Score=40.14  Aligned_cols=33  Identities=21%  Similarity=0.100  Sum_probs=27.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST   74 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~   74 (220)
                      .+++|+|+|+|++|.-++..++.+|.++.++..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~   34 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLV   34 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEe
Confidence            468999999999999999999999986554433

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.0095  Score=41.79  Aligned_cols=31  Identities=26%  Similarity=0.198  Sum_probs=28.7

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+|..|+.++..+...|.+|.++.+.+
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            7889999999999999999999999999875

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.36  E-value=0.011  Score=42.68  Aligned_cols=95  Identities=20%  Similarity=0.076  Sum_probs=58.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCC---cEEecCCCHHHHHHhcCCccEEEE-
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGA---DSFLVSRDQDEMQAAMGTMDGIID-  112 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~---~~v~~~~~~~~~~~~~~~~d~vid-  112 (220)
                      +++|++||-.|||. |..++.+|+.-+++|++++.+++..+.+.+   ..|.   -.+++.+..+...  .+.+|.|+- 
T Consensus       105 ~~~g~~VlD~~aG~-G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--~~~~D~Ii~~  181 (260)
T d2frna1         105 AKPDELVVDMFAGI-GHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--ENIADRILMG  181 (260)
T ss_dssp             CCTTCEEEETTCTT-TTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--CSCEEEEEEC
T ss_pred             cCCccEEEECcceE-cHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--CCCCCEEEEC
Confidence            58999999988652 555556666544699999999887655533   3343   2333332211110  126887763 


Q ss_pred             cC-CCcccHHHHHhccccCCEEEEec
Q 027668          113 TV-SAVHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~-g~~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      -- .....+..++..+++||.+....
T Consensus       182 ~p~~~~~~l~~a~~~l~~gG~lh~~~  207 (260)
T d2frna1         182 YVVRTHEFIPKALSIAKDGAIIHYHN  207 (260)
T ss_dssp             CCSSGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCCchHHHHHHHHhhcCCCCEEEEEe
Confidence            22 22334667889999999886554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.35  E-value=0.15  Score=32.68  Aligned_cols=70  Identities=13%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcC-------C-cEEecCCCHHHHHHhcCCccEEEEcC
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG-------A-DSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g-------~-~~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      .+|.|+|+|.+|..++.++...+. ++..++..+++.+.....+.       . ..+....+.+.    ..+.|+|+-++
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~----~~~advvvita   77 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD----TANSDVIVVTS   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG----GTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH----hcCCCEEEEee
Confidence            478899999999998887777776 88888877765333222221       1 11211122211    24789999999


Q ss_pred             CCc
Q 027668          115 SAV  117 (220)
Q Consensus       115 g~~  117 (220)
                      |.+
T Consensus        78 g~~   80 (142)
T d1uxja1          78 GAP   80 (142)
T ss_dssp             SCC
T ss_pred             ecc
Confidence            875

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.35  E-value=0.0096  Score=43.81  Aligned_cols=33  Identities=36%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .|+|+|||+.|++++..++..|.++.+.++.++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            489999999999999999999999999987643

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.34  E-value=0.066  Score=35.23  Aligned_cols=70  Identities=17%  Similarity=0.258  Sum_probs=46.1

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHHHHc-------CCcEEecCCCHHHHHHhcCCccEEEEcC
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAVERL-------GADSFLVSRDQDEMQAAMGTMDGIIDTV  114 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~~~~-------g~~~v~~~~~~~~~~~~~~~~d~vid~~  114 (220)
                      .+|.|+|+|.+|..++..+...|.  +++.++..+++.+..+..+       +...++...+.+    ...+.|+|+-++
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~----~~~~adivvita   95 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN----VSANSKLVIITA   95 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG----GGTTEEEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh----hhccccEEEEec
Confidence            579999999999999999888886  7888887765432211111       222222222222    224789999888


Q ss_pred             CCc
Q 027668          115 SAV  117 (220)
Q Consensus       115 g~~  117 (220)
                      |.+
T Consensus        96 g~~   98 (159)
T d2ldxa1          96 GAR   98 (159)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            875

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.33  E-value=0.013  Score=41.75  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      +.|||.|+ +++|+++++.+...|++|++++++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            46788897 89999999999999999999998754

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.33  E-value=0.034  Score=40.54  Aligned_cols=94  Identities=14%  Similarity=0.204  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcC---------C-cEEecCCCHHHHHHhcC-CccE
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLG---------A-DSFLVSRDQDEMQAAMG-TMDG  109 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g---------~-~~v~~~~~~~~~~~~~~-~~d~  109 (220)
                      .-++|||+|.|. |..+-.+++..+. ++.+++-+++-.+.+ +++-         . -.++..+..+.+++..+ .+|+
T Consensus        80 ~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~-~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          80 NPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVS-KQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             CCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHH-HHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHH-HHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            347899998754 4455566776676 788888887655444 3331         1 12333333455555444 7998


Q ss_pred             EE-EcCCCc---------ccHHHHHhccccCCEEEEec
Q 027668          110 II-DTVSAV---------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       110 vi-d~~g~~---------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      || |+....         +-++.+-++|+++|.++.-.
T Consensus       158 Ii~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         158 VIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             EEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            87 444321         12567788999999998754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.32  E-value=0.013  Score=40.16  Aligned_cols=37  Identities=24%  Similarity=0.352  Sum_probs=31.6

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEA   82 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~   82 (220)
                      +|.|+|.|-+|+.++.++ +.|.+|+.++.++++.+.+
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l   38 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKI   38 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHH
T ss_pred             EEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHH
Confidence            578899999999988666 5799999999998877766

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.012  Score=43.95  Aligned_cols=92  Identities=22%  Similarity=0.143  Sum_probs=49.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCccc--HHHHHHHcCC--c-EEecCCCHHHHHHhcCCccEEEEc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSK--KSEAVERLGA--D-SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~--~~~~~~~~g~--~-~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      ..+|++||-+|+|. |..+..++ ..|+ +|++++.++..  ..+..+..+.  . .++.. +...+....+.+|+|+..
T Consensus        36 ~~~~~~VLDlGcGt-G~ls~~aa-~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~-~~~~l~~~~~~~D~i~se  112 (328)
T d1g6q1_          36 LFKDKIVLDVGCGT-GILSMFAA-KHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRG-KLEDVHLPFPKVDIIISE  112 (328)
T ss_dssp             HHTTCEEEEETCTT-SHHHHHHH-HTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEES-CTTTSCCSSSCEEEEEEC
T ss_pred             cCCcCEEEEeCCCC-CHHHHHHH-HhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEe-ehhhccCcccceeEEEEE
Confidence            46889999999874 66555444 4677 89998877521  1122233342  1 22222 211111111378998753


Q ss_pred             C-C----Cccc----HHHHHhccccCCEEE
Q 027668          114 V-S----AVHP----LMPLIGLLKSQGKLV  134 (220)
Q Consensus       114 ~-g----~~~~----~~~~~~~l~~~g~iv  134 (220)
                      . +    ....    +...-+.|+|+|.++
T Consensus       113 ~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         113 WMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             ecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            2 1    1112    222346789999885

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.27  E-value=0.014  Score=42.60  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=31.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      -.|.+|+|.|.|.+|..+++.+...|++|+.++.+
T Consensus        34 L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~   68 (293)
T d1hwxa1          34 FGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGES   68 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcc
Confidence            36789999999999999999999999999988754

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.26  E-value=0.092  Score=38.75  Aligned_cols=93  Identities=13%  Similarity=0.214  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHH-HCCC-eEEEEeCCcccHHHHHHHc---CCcEEecCCCHHHHHHhcCCccEEEEcCC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGV-KVTVISTSPSKKSEAVERL---GADSFLVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~-~~g~-~v~~~~~~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      +...++.|+|+|..+..-++.+. .+.. +|.+.++++++.+.+...+   +.....+  ..+    ...+.|+|+-|+.
T Consensus       123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~--~~~----a~~~aDiV~taT~  196 (320)
T d1omoa_         123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQ--PAE----EASRCDVLVTTTP  196 (320)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEEC--CHH----HHTSSSEEEECCC
T ss_pred             CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccc--hhh----hhccccEEEEecc
Confidence            44478899999999988777666 4566 8999999988776665443   3343322  122    2357999999887


Q ss_pred             CcccHHHHHhccccCCEEEEecCCC
Q 027668          116 AVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       116 ~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ....+- --+.+++|-.+..+|...
T Consensus       197 s~~P~~-~~~~l~~G~hv~~iGs~~  220 (320)
T d1omoa_         197 SRKPVV-KAEWVEEGTHINAIGADG  220 (320)
T ss_dssp             CSSCCB-CGGGCCTTCEEEECSCCS
T ss_pred             Cccccc-chhhcCCCCeEeecCCcc
Confidence            653321 124689999999999865

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.24  E-value=0.011  Score=40.92  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=27.8

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      |+|+|+|+.|+.++..+..+|.+|.++.+.
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            688999999999999999999999999875

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.22  E-value=0.041  Score=35.72  Aligned_cols=35  Identities=29%  Similarity=0.507  Sum_probs=29.0

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCccc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSK   78 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~   78 (220)
                      ++|.|+|+|.+|..++..+...|.  +++.++..+++
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~   38 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAK   38 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccch
Confidence            578899999999998887877775  78888877665

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.22  E-value=0.013  Score=43.45  Aligned_cols=91  Identities=23%  Similarity=0.154  Sum_probs=50.7

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHH---HHcCC-c--EEecCCCHHHHHHhcCCccEEEE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAV---ERLGA-D--SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~---~~~g~-~--~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      +.+|++||-+|+|. |...+.+++ .|+ +|++++.++. ...+.   +..+. +  .++..+. ..+....+.+|+|+.
T Consensus        31 ~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~-~~~~~~~~~~D~ivs  106 (316)
T d1oria_          31 LFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKV-EEVELPVEKVDIIIS  106 (316)
T ss_dssp             HHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCT-TTCCCSSSCEEEEEE
T ss_pred             cCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccH-HHcccccceeEEEee
Confidence            46889999999875 766665555 676 7999997754 22222   22332 1  2222221 111111137899875


Q ss_pred             cC-CC----cccH----HHHHhccccCCEEE
Q 027668          113 TV-SA----VHPL----MPLIGLLKSQGKLV  134 (220)
Q Consensus       113 ~~-g~----~~~~----~~~~~~l~~~g~iv  134 (220)
                      .. +.    ...+    ...-+.|+++|.++
T Consensus       107 ~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         107 EWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             CCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             eeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            32 21    1112    33456899999886

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.17  E-value=0.045  Score=39.60  Aligned_cols=94  Identities=15%  Similarity=0.113  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC---------------cEEecCCCHHHHHHhcC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA---------------DSFLVSRDQDEMQAAMG  105 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~---------------~~v~~~~~~~~~~~~~~  105 (220)
                      .+.++|||+|+|. |..+-.+++....+|.++.-+++-.+.+.+-|+.               -.++..+....+++ .+
T Consensus        71 ~~p~~vLiiG~G~-G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~-~~  148 (276)
T d1mjfa_          71 PKPKRVLVIGGGD-GGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  148 (276)
T ss_dssp             SCCCEEEEEECTT-SHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCceEEEecCCc-hHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc-cC
Confidence            4458999998753 3334444554334888888877655444322221               12333332344443 35


Q ss_pred             CccEEE-EcCCCc---------ccHHHHHhccccCCEEEEe
Q 027668          106 TMDGII-DTVSAV---------HPLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       106 ~~d~vi-d~~g~~---------~~~~~~~~~l~~~g~iv~~  136 (220)
                      .+|+|| |+....         +-++.+-++|+++|.++.-
T Consensus       149 ~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         149 GFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             CEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            899997 444321         1256678899999998753

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.07  E-value=0.014  Score=43.39  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=28.2

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCC--CeEEEEeCCcc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMG--VKVTVISTSPS   77 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g--~~v~~~~~~~~   77 (220)
                      ++|+|+|+|+.|++++..++..|  .+|++..+.+.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            68999999999999987776655  48999988853

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.06  E-value=0.014  Score=39.54  Aligned_cols=91  Identities=16%  Similarity=0.176  Sum_probs=53.3

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH---HcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE---RLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~---~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      +|.|+|+ |-+|+-+++++..+-. ++..+......-..+..   .+.....  ............+.|++|-|.+... 
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~alp~~~-   83 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDL--PNLVAVKDADFSNVDAVFCCLPHGT-   83 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCC--CCCBCGGGCCGGGCSEEEECCSSSH-
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcccccccccccccc--ccchhhhhhhhcccceeeeccccch-
Confidence            5789998 9999999999998755 76666544332112211   1111100  0000111111237899999998874 


Q ss_pred             HHHHHhccccCCEEEEecC
Q 027668          120 LMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g~  138 (220)
                      -......+...+..+....
T Consensus        84 s~~~~~~l~~~~~~v~~~~  102 (183)
T d2cvoa1          84 TQEIIKGLPQELKIVDLSA  102 (183)
T ss_dssp             HHHHHHTSCSSCEEEECSS
T ss_pred             HHHHHHHHHhcCcccccch
Confidence            4455566777788776554

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.06  E-value=0.015  Score=40.61  Aligned_cols=31  Identities=26%  Similarity=0.340  Sum_probs=28.0

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+|+.|+.++..+...|.+|.++++.+
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            6789999999999999999999999998754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=95.04  E-value=0.011  Score=44.00  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=27.1

Q ss_pred             EEEEcCchHHHHHHHHHH-----HCCCeEEEEeCCcc
Q 027668           46 VGVVGLGGLGHVAVKFAK-----AMGVKVTVISTSPS   77 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~-----~~g~~v~~~~~~~~   77 (220)
                      |+|+|+|+.|++++..+.     ..|.+|+++++.+.
T Consensus        10 V~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1          10 VLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            789999999999998874     57999999988653

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.01  E-value=0.016  Score=40.17  Aligned_cols=31  Identities=39%  Similarity=0.412  Sum_probs=27.9

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ++|+|+|+.|+.++..+...|.+|.++.+..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            6778999999999999999999999998653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.97  E-value=0.016  Score=40.51  Aligned_cols=31  Identities=32%  Similarity=0.296  Sum_probs=28.3

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+||.|+.++..+...|.+|.++.+.+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            6788999999999999999999999998754

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.96  E-value=0.3  Score=33.34  Aligned_cols=95  Identities=20%  Similarity=0.133  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHH---HHcCCc-EEecCCCHHHHHH-hc-CCccEEEEcC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAV---ERLGAD-SFLVSRDQDEMQA-AM-GTMDGIIDTV  114 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~---~~~g~~-~v~~~~~~~~~~~-~~-~~~d~vid~~  114 (220)
                      ++..||=+|+|. |..++.+|+.. +..++.++.+......+.   ++.|.+ ..+-..+...+.. +. +.+|.|+-..
T Consensus        29 ~~PlvLeIGcG~-G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f  107 (204)
T d2fcaa1          29 DNPIHIEVGTGK-GQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  107 (204)
T ss_dssp             CCCEEEEECCTT-SHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEEecC-cHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccccc
Confidence            345667789985 88899999986 458999998888665553   355643 2222333323322 32 2688877554


Q ss_pred             CCc--------------ccHHHHHhccccCCEEEEec
Q 027668          115 SAV--------------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       115 g~~--------------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      ..+              ..+..+.+.|++||.+.+..
T Consensus       108 p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         108 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            443              23566778899999998764

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.015  Score=43.07  Aligned_cols=31  Identities=35%  Similarity=0.416  Sum_probs=28.4

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+|..|+.++..++..|.+|+++.+.+
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            6889999999999999999999999998754

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=94.92  E-value=0.037  Score=40.92  Aligned_cols=98  Identities=19%  Similarity=0.083  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHH---HcCCc--EEecCCCHHHHHHh---cCCccEEEE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAA---MGTMDGIID  112 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~---~~~~d~vid  112 (220)
                      .+|++||=+++|+ |..++.+++ .+.+|+.++.++...+.+.+   ..|.+  .++..+..+..+.+   .+.||+|+-
T Consensus       144 ~~g~rVLDl~~gt-G~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         144 FRGERALDVFSYA-GGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CCEEEEEEETCTT-THHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             hCCCeeeccCCCC-cHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            4789999887654 333445553 35599999999887666643   33442  22333323433333   237999984


Q ss_pred             c---CCC--c----------ccHHHHHhccccCCEEEEecCCC
Q 027668          113 T---VSA--V----------HPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       113 ~---~g~--~----------~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      -   .+.  .          ..+..+++.|+|||.++.+....
T Consensus       222 DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~  264 (318)
T d1wxxa2         222 DPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH  264 (318)
T ss_dssp             CCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             cCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence            2   211  1          12446778899999999876643

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=94.92  E-value=0.015  Score=41.70  Aligned_cols=31  Identities=13%  Similarity=0.220  Sum_probs=28.5

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+|.+|++++.-+...|.+|+++++.+
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            7899999999999999999999999999864

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.91  E-value=0.056  Score=39.76  Aligned_cols=95  Identities=22%  Similarity=0.161  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCC---------cEEecCCCHHHHHHhcCCccEEE
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA---------DSFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      .-++|||+|+|. |..+-.+++..+. +|.++.-+++-.+.+.+-+..         ..++..+..+.+++..+.||+||
T Consensus       106 ~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         106 DPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            347899998764 4445566676665 788888887655444332321         12222222345555445899998


Q ss_pred             EcCCCc----------ccHHHHHhccccCCEEEEec
Q 027668          112 DTVSAV----------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       112 d~~g~~----------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      --...+          +-++.+-++|+++|.++.-+
T Consensus       185 ~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~  220 (312)
T d2b2ca1         185 TDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  220 (312)
T ss_dssp             ECCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence            432221          11456777899999998754

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.073  Score=37.00  Aligned_cols=100  Identities=15%  Similarity=0.112  Sum_probs=63.7

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHHH---HcCCc---EEecCCCHHHHHHhc-----CC
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAVE---RLGAD---SFLVSRDQDEMQAAM-----GT  106 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~---~~g~~---~v~~~~~~~~~~~~~-----~~  106 (220)
                      ...-++||-+|.+ +|..++.+++.+  +.+++.++.+++..+.+.+   +.|..   .+......+.+.+..     +.
T Consensus        57 ~~~~k~vLEiGt~-~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~  135 (219)
T d2avda1          57 LIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT  135 (219)
T ss_dssp             HTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             ccCCCeEEEEech-hhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCC
Confidence            3455899999975 377777788765  4599999998876555433   33531   122233234444331     37


Q ss_pred             ccEEEEcCCCcc---cHHHHHhccccCCEEEEecCCC
Q 027668          107 MDGIIDTVSAVH---PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       107 ~d~vid~~g~~~---~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      ||+||--.....   .++.+++.|++||.++.=....
T Consensus       136 fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~  172 (219)
T d2avda1         136 FDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLW  172 (219)
T ss_dssp             EEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSG
T ss_pred             ccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCcc
Confidence            999985443332   3667899999999998865543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.87  E-value=0.013  Score=40.68  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      ++|+|+|+.|+.++..+..+|.+|.++.+.
T Consensus         8 lvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           8 LLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            688899999999999999999999999865

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.80  E-value=0.017  Score=39.33  Aligned_cols=32  Identities=22%  Similarity=0.283  Sum_probs=28.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      ..|+|+|+|+.|+.++..+...|.+++++.+.
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            57899999999999999999999999988754

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.053  Score=33.73  Aligned_cols=81  Identities=15%  Similarity=0.155  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCchH-----------HHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcC-CcEEec-CCCHHHHHHhcC--C
Q 027668           42 PGMHVGVVGLGGL-----------GHVAVKFAKAMGVKVTVISTSPSKKSEAVERLG-ADSFLV-SRDQDEMQAAMG--T  106 (220)
Q Consensus        42 ~~~~vlI~G~g~~-----------G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g-~~~v~~-~~~~~~~~~~~~--~  106 (220)
                      ..++|||+|+|+.           +..+++-++..|.+++.+..+++...   ..+. ++.++. +-..+.+.++..  +
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVs---td~d~aD~lYfeplt~e~v~~Ii~~E~   79 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVS---TDYDTSDRLYFEPVTLEDVLEIVRIEK   79 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSST---TSTTSSSEEECCCCSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhh---cChhhcCceEEccCCHHHHHHHHHHhC
Confidence            3578999998742           34566667778999999999987643   2233 455543 333555655443  8


Q ss_pred             ccEEEEcCCCcccHHHHHh
Q 027668          107 MDGIIDTVSAVHPLMPLIG  125 (220)
Q Consensus       107 ~d~vid~~g~~~~~~~~~~  125 (220)
                      +|.|+-..|+.-.++.+..
T Consensus        80 p~~ii~~~GGQtalnla~~   98 (121)
T d1a9xa4          80 PKGVIVQYGGQTPLKLARA   98 (121)
T ss_dssp             CSEEECSSSTHHHHTTHHH
T ss_pred             CCEEEeehhhhhHHHHHHH
Confidence            8999988888754544444

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=94.72  E-value=0.014  Score=42.23  Aligned_cols=61  Identities=10%  Similarity=0.159  Sum_probs=40.4

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcC--CccEEEEcCCCc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSAV  117 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~d~vid~~g~~  117 (220)
                      +|||.|+ |-+|..++..+...|. ++++......       +-    .|-.+.+.+++...  ++|+||.+++..
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~-------~~----~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~   65 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE-------FC----GDFSNPKGVAETVRKLRPDVIVNAAAHT   65 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS-------SC----CCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc-------cc----CcCCCHHHHHHHHHHcCCCEEEEecccc
Confidence            5899997 9999999998887775 4444444321       11    23345555555443  789999998753

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.70  E-value=0.11  Score=38.19  Aligned_cols=99  Identities=20%  Similarity=0.208  Sum_probs=61.5

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCcccHHHHH---HHcCCcEEe-cCCCHHHHHHhcCCccEEE-E
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSPSKKSEAV---ERLGADSFL-VSRDQDEMQAAMGTMDGII-D  112 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~~~~~~~~---~~~g~~~v~-~~~~~~~~~~~~~~~d~vi-d  112 (220)
                      .++|++||=..|++ |--+.+++..++.  .+++.+.++.+...+.   +++|...+. ...+..........||.|+ |
T Consensus       114 ~~~g~~vlD~CAap-GgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvD  192 (313)
T d1ixka_         114 PKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLD  192 (313)
T ss_dssp             CCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEE
T ss_pred             CCccceeeecccch-hhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEc
Confidence            68999988765444 3345556655543  7888999888765553   456654332 2333333333334799886 5


Q ss_pred             --cCCCc-------------------------ccHHHHHhccccCCEEEEecCC
Q 027668          113 --TVSAV-------------------------HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       113 --~~g~~-------------------------~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                        |+|..                         ..+..++..+++||.+|.....
T Consensus       193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS  246 (313)
T d1ixka_         193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  246 (313)
T ss_dssp             CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence              55553                         1346678889999998876554

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=94.62  E-value=0.019  Score=41.95  Aligned_cols=31  Identities=45%  Similarity=0.580  Sum_probs=28.5

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+|..|+.++.-+...|++|+++++.+
T Consensus        19 VlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          19 VVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            7899999999999999999999999998764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.59  E-value=0.039  Score=36.11  Aligned_cols=35  Identities=20%  Similarity=0.118  Sum_probs=29.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~   76 (220)
                      -+++|+|+|+|.+|.=++..+..+|+ .|+++.+.+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            46789999999999999999999999 577776654

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=94.58  E-value=0.099  Score=34.73  Aligned_cols=93  Identities=15%  Similarity=0.095  Sum_probs=53.0

Q ss_pred             CCCCCEEEEEcC--chHHHHHHHHHHHCCCeEEEEeCCcccHHHHH---HHcCC-cEEecCCCHHHHH---HhcCCccEE
Q 027668           40 DKPGMHVGVVGL--GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAV---ERLGA-DSFLVSRDQDEMQ---AAMGTMDGI  110 (220)
Q Consensus        40 ~~~~~~vlI~G~--g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~---~~~g~-~~v~~~~~~~~~~---~~~~~~d~v  110 (220)
                      +.+|.+||=.++  |.+|+   . +...|++++.++.+++..+.+.   +.+|. ..+..........   .....||+|
T Consensus        39 ~~~g~~vLDl~~G~G~~~i---~-a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~I  114 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGL---E-AASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVA  114 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHH---H-HHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred             ccCCCeEEEeccccchhhh---h-hhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCcccee
Confidence            578889998875  44443   3 3346999999888887655442   34554 3444333222222   222379999


Q ss_pred             EEc----CCCcccHHHHH--hccccCCEEEEe
Q 027668          111 IDT----VSAVHPLMPLI--GLLKSQGKLVLL  136 (220)
Q Consensus       111 id~----~g~~~~~~~~~--~~l~~~g~iv~~  136 (220)
                      |--    .+....+....  ..++++|.++.-
T Consensus       115 f~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         115 FMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             EECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             EEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            842    22222233332  357888877753

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.032  Score=40.79  Aligned_cols=94  Identities=17%  Similarity=0.147  Sum_probs=54.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCC---------cEEecCCCHHHHHHhcCCccEEE-
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGA---------DSFLVSRDQDEMQAAMGTMDGII-  111 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~---------~~v~~~~~~~~~~~~~~~~d~vi-  111 (220)
                      -++|||+|+|. |..+-.+++..+. +|.++.-+++-.+.+.+-++.         -.++..+..+.+++..+.+|+|| 
T Consensus        90 pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          90 PKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             CCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            37999998754 4445566666655 788888887755444322211         12222222334443334899997 


Q ss_pred             EcCCC---c-------ccHHHHHhccccCCEEEEec
Q 027668          112 DTVSA---V-------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       112 d~~g~---~-------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      |+...   +       +-++.+.+.|+++|.++.-.
T Consensus       169 D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         169 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            44321   1       12456888999999998654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.56  E-value=0.039  Score=36.05  Aligned_cols=47  Identities=19%  Similarity=0.116  Sum_probs=38.1

Q ss_pred             hhhhhhHhccCCCCCCEEEEE--cCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           29 TVYSPLRFYGLDKPGMHVGVV--GLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        29 ta~~~l~~~~~~~~~~~vlI~--G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      |....+.  ....+++.++|+  |+|-+|+-++..+...|++|+++.+.+.
T Consensus        27 t~~d~l~--~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          27 TPEQVMD--GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CHHHHHH--TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CHHHHhc--CccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            4455554  235788898887  7799999999999999999999998753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.024  Score=39.16  Aligned_cols=30  Identities=23%  Similarity=0.381  Sum_probs=27.5

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      ++|+|+|+.|+.++..+...|.+|.++.+.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            577899999999999999999999999864

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.068  Score=38.43  Aligned_cols=98  Identities=15%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHH----C-C--CeEEEEeCCcccHHHHHHHcCC-----cEEec--CCCHHHH-HHh-
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKA----M-G--VKVTVISTSPSKKSEAVERLGA-----DSFLV--SRDQDEM-QAA-  103 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~----~-g--~~v~~~~~~~~~~~~~~~~~g~-----~~v~~--~~~~~~~-~~~-  103 (220)
                      .+++-+||=+|+|+ |..+..+++.    . +  .++++++.++...+.+.+.+..     ...++  ....+.. ... 
T Consensus        38 ~~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          38 TKSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             TCSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence            34555799999864 4444444332    2 2  3677888887766666544321     11111  1112211 111 


Q ss_pred             ----cCCccEEEEcCCCc------ccHHHHHhccccCCEEEEecC
Q 027668          104 ----MGTMDGIIDTVSAV------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       104 ----~~~~d~vid~~g~~------~~~~~~~~~l~~~g~iv~~g~  138 (220)
                          .+.||+|+-...-.      ..++.+.+.|+++|.++....
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEe
Confidence                13799998643321      246678889999999887654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.038  Score=40.41  Aligned_cols=59  Identities=17%  Similarity=0.168  Sum_probs=41.3

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcC--CccEEEEcCCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMG--TMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~--~~d~vid~~g~  116 (220)
                      ++|||.|+ |-+|..+++.+...|..++++....+              .+..+.+.+.++..  .+|.++.+++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~--------------~~~~~~~~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE--------------LNLLDSRAVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT--------------CCTTCHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh--------------ccccCHHHHHHHHhhcCCCEEEEcchh
Confidence            47999997 99999999999999998876654432              12333444444332  78888887644

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.44  E-value=0.039  Score=34.20  Aligned_cols=35  Identities=17%  Similarity=0.044  Sum_probs=28.7

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHC---CCeEEEEeCCcc
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAM---GVKVTVISTSPS   77 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~---g~~v~~~~~~~~   77 (220)
                      .++++|+|+|.+|.-++.++..+   |.+|.++.+.+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            47999999999999888876654   789999988653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.43  E-value=0.063  Score=34.95  Aligned_cols=72  Identities=15%  Similarity=0.142  Sum_probs=46.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHc-------CCc-EEecCCCHHHHHHhcCCccEEEE
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL-------GAD-SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~-------g~~-~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      |..+|.|+|+|.+|..++.++...+. ++...+..+++.+.....+       +.. .+....+.    +...+.|+|+-
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~----~~~~~advvvi   77 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY----DDLAGADVVIV   77 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG----GGGTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccc----cccCCCcEEEE
Confidence            45789999999999999988888887 8888887765433221211       111 12111111    12247899998


Q ss_pred             cCCCc
Q 027668          113 TVSAV  117 (220)
Q Consensus       113 ~~g~~  117 (220)
                      +.|.+
T Consensus        78 tag~~   82 (150)
T d1t2da1          78 TAGFT   82 (150)
T ss_dssp             CCSCS
T ss_pred             ecccc
Confidence            88854

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.42  E-value=0.023  Score=39.36  Aligned_cols=31  Identities=32%  Similarity=0.382  Sum_probs=27.8

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+||.|+.++..+...|.+|.++++.+
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            6788999999999999999999999998643

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.41  E-value=0.02  Score=40.07  Aligned_cols=30  Identities=30%  Similarity=0.290  Sum_probs=27.5

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      |+|+|+||.|+.++..+...|.+|.++...
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~   35 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFV   35 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence            688999999999999999999999999854

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.34  E-value=0.026  Score=39.38  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=27.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHH--CCCeEEEEeCCcc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKA--MGVKVTVISTSPS   77 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~--~g~~v~~~~~~~~   77 (220)
                      .+|+|+|+|+.|+.++..+..  .|++|++.++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            379999999999999986643  4779999987753

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=94.32  E-value=0.02  Score=41.00  Aligned_cols=96  Identities=20%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHH---HHcCC-cEE-ecCCCHHHHHHhcCCccEEEEc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAV---ERLGA-DSF-LVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~---~~~g~-~~v-~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      +....+||=+|+|. |..+..+++.+ +.++++++.+ +..+.+.   ++.|. +.+ +...+  .......++|+++-.
T Consensus        79 ~~~~~~vlDvG~G~-G~~~~~l~~~~P~~~~~~~Dlp-~~~~~a~~~~~~~~~~~ri~~~~~d--~~~~~p~~~D~v~~~  154 (256)
T d1qzza2          79 WSAVRHVLDVGGGN-GGMLAAIALRAPHLRGTLVELA-GPAERARRRFADAGLADRVTVAEGD--FFKPLPVTADVVLLS  154 (256)
T ss_dssp             CTTCCEEEEETCTT-SHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHTTCTTTEEEEECC--TTSCCSCCEEEEEEE
T ss_pred             CccCCEEEEECCCC-CHHHHHHHHhhcCcEEEEecCh-HHHHHHHHHHhhcCCcceeeeeeee--ccccccccchhhhcc
Confidence            57778999999875 88999999988 5699988864 3332222   23332 111 11111  111122378988743


Q ss_pred             CCC-----c---ccHHHHHhccccCCEEEEecCC
Q 027668          114 VSA-----V---HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       114 ~g~-----~---~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      .--     .   ..++.+.+.|+|||+++++...
T Consensus       155 ~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         155 FVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             ccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            221     1   1356677889999999988753

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.05  Score=35.31  Aligned_cols=82  Identities=17%  Similarity=0.198  Sum_probs=43.0

Q ss_pred             EEEEEcC-chHHHHHHHH-HHHCC--C-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           45 HVGVVGL-GGLGHVAVKF-AKAMG--V-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~-~~~~g--~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      +|.|+|+ |-+|+-.+++ +.+..  . +++...++...............+....+.+..    .++|++|-|++... 
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~----~~~DivF~a~~~~~-   77 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL----KALDIIVTCQGGDY-   77 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHH----HTCSEEEECSCHHH-
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhh----hcCcEEEEecCchH-
Confidence            6889998 9999999985 44332  2 566555543321111000011112222222221    37999999998874 


Q ss_pred             HHHHHhccccCC
Q 027668          120 LMPLIGLLKSQG  131 (220)
Q Consensus       120 ~~~~~~~l~~~g  131 (220)
                      -......+...|
T Consensus        78 s~~~~~~~~~~g   89 (146)
T d1t4ba1          78 TNEIYPKLRESG   89 (146)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHhhHHHHhcC
Confidence            333444443333

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=94.29  E-value=0.026  Score=40.53  Aligned_cols=31  Identities=32%  Similarity=0.347  Sum_probs=28.3

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+|.+|+.++.-+...|.+|+++++.+
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            7889999999999999999999999998754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.25  E-value=0.31  Score=33.67  Aligned_cols=109  Identities=18%  Similarity=0.171  Sum_probs=60.7

Q ss_pred             hhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC--------cccHHHHHHHcCCcEEecCCCHHHHH
Q 027668           31 YSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS--------PSKKSEAVERLGADSFLVSRDQDEMQ  101 (220)
Q Consensus        31 ~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~--------~~~~~~~~~~~g~~~v~~~~~~~~~~  101 (220)
                      ..+++..+.--.+.+|++.|+|..|...++++...+. +++.+++.        ........+.+... .-.......+.
T Consensus        14 l~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~-~~~~~~~~~l~   92 (222)
T d1vl6a1          14 LNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARI-TNPERLSGDLE   92 (222)
T ss_dssp             HHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHT-SCTTCCCSCHH
T ss_pred             HHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhh-hcchhhhcchH
Confidence            3445555544567899999999999999999988888 78888875        11111111111100 00000011223


Q ss_pred             HhcCCccEEEEcCCCcccHHHHHhccccCCEEEEecCCC
Q 027668          102 AAMGTMDGIIDTVSAVHPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       102 ~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +...+.++++......-.....+..+.++-.|.-+..+.
T Consensus        93 ~~l~g~~~~~g~~~~~~~~~e~m~~~~~rPIIFpLSNPt  131 (222)
T d1vl6a1          93 TALEGADFFIGVSRGNILKPEWIKKMSRKPVIFALANPV  131 (222)
T ss_dssp             HHHTTCSEEEECSCSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             hhccCcceeccccccccccHHHHhhcCCCCEEEecCCCc
Confidence            334578888877655422334566666655554544443

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=94.22  E-value=0.62  Score=33.41  Aligned_cols=100  Identities=18%  Similarity=0.254  Sum_probs=62.2

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeC--CcccHHHHHHHcCCcEEecCCCH------------------
Q 027668           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST--SPSKKSEAVERLGADSFLVSRDQ------------------   97 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~--~~~~~~~~~~~~g~~~v~~~~~~------------------   97 (220)
                      +.+.++..|+...+|..|++++..++.+|.+++++..  .++......+.+|++.++...+.                  
T Consensus        55 g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~~~  134 (292)
T d2bhsa1          55 GEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEG  134 (292)
T ss_dssp             TSCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHTSS
T ss_pred             CCcCCCceeeeecccchhHHHHHHHHhcCcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccccc
Confidence            4456666666667899999999999999996555544  33334455588898744322110                  


Q ss_pred             ---------------------HHHHHhcCCccEEEEcCCCcccHH---HHHhccccCCEEEEec
Q 027668           98 ---------------------DEMQAAMGTMDGIIDTVSAVHPLM---PLIGLLKSQGKLVLLG  137 (220)
Q Consensus        98 ---------------------~~~~~~~~~~d~vid~~g~~~~~~---~~~~~l~~~g~iv~~g  137 (220)
                                           +..++..+.+|.++-++|...++.   ..++...+..+++.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Ve  198 (292)
T d2bhsa1         135 KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQ  198 (292)
T ss_dssp             EECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred             cccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCcceEEEec
Confidence                                 011112235999999888765443   3445556777776554

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.18  E-value=0.031  Score=40.68  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=32.1

Q ss_pred             CCCCEEEEEcC-c--hHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           41 KPGMHVGVVGL-G--GLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        41 ~~~~~vlI~G~-g--~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      -+|+++||.|+ |  ++|.++++.+...|++|++..+++.
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            36899999997 4  7999999999999999999887654

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.12  E-value=0.25  Score=32.78  Aligned_cols=88  Identities=24%  Similarity=0.251  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc---
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH---  118 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~---  118 (220)
                      ++++|.|+|=|+-|.+-++-++-.|.+|++--+...+..+.+++-|.+..       .+.+.....|+|.-.+....   
T Consensus        15 k~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-------~~~eA~~~aDiim~L~PD~~q~~   87 (182)
T d1np3a2          15 QGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-------DVKTAVAAADVVMILTPDEFQGR   87 (182)
T ss_dssp             HTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-------CHHHHHHTCSEEEECSCHHHHHH
T ss_pred             CCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-------cHHHHhhhcCeeeeecchHHHHH
Confidence            46889999999999999999999999999888877654444466677632       24444557899987777541   


Q ss_pred             cHH-HHHhccccCCEEEEe
Q 027668          119 PLM-PLIGLLKSQGKLVLL  136 (220)
Q Consensus       119 ~~~-~~~~~l~~~g~iv~~  136 (220)
                      .++ .....|+++..+...
T Consensus        88 vy~~~I~p~lk~g~~L~Fa  106 (182)
T d1np3a2          88 LYKEEIEPNLKKGATLAFA  106 (182)
T ss_dssp             HHHHHTGGGCCTTCEEEES
T ss_pred             HHHHhhhhhcCCCcEEEEe
Confidence            121 234456777776654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.04  E-value=0.019  Score=40.10  Aligned_cols=34  Identities=18%  Similarity=0.262  Sum_probs=28.3

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCC-------CeEEEEeCCcc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMG-------VKVTVISTSPS   77 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g-------~~v~~~~~~~~   77 (220)
                      -+|+|+|+|+.|++++..+...|       ++|.+.++.+.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            37999999999999998887766       57889888653

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=94.03  E-value=0.055  Score=38.10  Aligned_cols=95  Identities=12%  Similarity=0.176  Sum_probs=57.4

Q ss_pred             CEEEEEcCch----HHHHHHHHHHHC--CCeEEEE-eCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           44 MHVGVVGLGG----LGHVAVKFAKAM--GVKVTVI-STSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        44 ~~vlI~G~g~----~G~~~~~~~~~~--g~~v~~~-~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      =+|.|+|+|.    ++..-+...+..  +.+++++ +++.++.+.+.++++....-.+.+.+.+-+ ...+|+|+.|+..
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~iD~V~i~tp~   95 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQ-YKDIDMIVVSVKV   95 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHH-CTTCSEEEECSCH
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhccc-ccccceeeccCCC
Confidence            3678999865    334334444443  4587754 555556677778887542222334333321 1379999999988


Q ss_pred             cccHHHHHhccccC-----CEEEEecCC
Q 027668          117 VHPLMPLIGLLKSQ-----GKLVLLGAP  139 (220)
Q Consensus       117 ~~~~~~~~~~l~~~-----g~iv~~g~~  139 (220)
                      ....+.+..+++.|     ++-|++.-+
T Consensus        96 ~~h~~~~~~al~aG~~~~~~k~V~~EKP  123 (237)
T d2nvwa1          96 PEHYEVVKNILEHSSQNLNLRYLYVEWA  123 (237)
T ss_dssp             HHHHHHHHHHHHHSSSCSSCCEEEEESS
T ss_pred             cchhhHHHHHHHhcccccCCceEEEecc
Confidence            76666777777654     455666543

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=94.03  E-value=0.031  Score=40.32  Aligned_cols=31  Identities=39%  Similarity=0.378  Sum_probs=26.5

Q ss_pred             EEEEcCchHHHHHHHHH-HHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFA-KAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~-~~~g~~v~~~~~~~   76 (220)
                      |+|+|+|+.|+.++..+ +..|.+|.++++.+
T Consensus        36 ViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          36 VVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            88999999999887754 55699999999875

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.00  E-value=0.013  Score=38.17  Aligned_cols=89  Identities=15%  Similarity=0.154  Sum_probs=49.7

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCC---CeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccH
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMG---VKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g---~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      +|.|+|+ |-+|+-+++++..++   .++..+..+...-+..  .+...... ..+.+.  ....+.|++|-|.+.....
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i--~~~~~~~~-~~~~~~--~~~~~~d~vf~a~p~~~s~   78 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM--GFAESSLR-VGDVDS--FDFSSVGLAFFAAAAEVSR   78 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE--EETTEEEE-CEEGGG--CCGGGCSEEEECSCHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce--eeccccch-hccchh--hhhccceEEEecCCcchhh
Confidence            5889998 999999999997543   3777665553321111  11111110 000010  1113789999999876434


Q ss_pred             HHHHhccccCCEEEEecC
Q 027668          121 MPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~  138 (220)
                      ...-....++.+++..+.
T Consensus        79 ~~~~~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          79 AHAERARAAGCSVIDLSG   96 (144)
T ss_dssp             HHHHHHHHTTCEEEETTC
T ss_pred             hhccccccCCceEEeech
Confidence            444445556666665544

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.99  E-value=0.049  Score=38.45  Aligned_cols=36  Identities=28%  Similarity=0.452  Sum_probs=30.6

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHH-HCCCeEEEEeCCc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAK-AMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~-~~g~~v~~~~~~~   76 (220)
                      -.|.+|+|.|.|.+|..+++++. ..|++|+.+..+.
T Consensus        30 l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~   66 (239)
T d1gtma1          30 LKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK   66 (239)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccc
Confidence            37899999999999999999775 6799998887653

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.92  E-value=0.051  Score=33.68  Aligned_cols=36  Identities=22%  Similarity=0.121  Sum_probs=28.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC---eEEEEeCCc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV---KVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~---~v~~~~~~~   76 (220)
                      +..++++|+|+|.+|.-++..++.+|.   +|+++.+.+
T Consensus        18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            344799999999999998888776654   688888764

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=93.88  E-value=0.032  Score=41.12  Aligned_cols=31  Identities=35%  Similarity=0.593  Sum_probs=28.5

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+|..|+.++.-+...|++|+++.+.+
T Consensus        26 VvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          26 VVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             EEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            7899999999999999999999999998764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=93.88  E-value=0.031  Score=41.28  Aligned_cols=32  Identities=28%  Similarity=0.270  Sum_probs=28.9

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      |+|+|+|+.|+.++.-|...|++|+++.+.+.
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~~   39 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIPV   39 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSSCG
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            78899999999999999999999999987643

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.82  E-value=0.27  Score=35.43  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=59.8

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCC-CeEEEEeCCcccHHHH---HHHcCCc-EEecCCCHHHHHHh-cCCccEEE-E
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMG-VKVTVISTSPSKKSEA---VERLGAD-SFLVSRDQDEMQAA-MGTMDGII-D  112 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g-~~v~~~~~~~~~~~~~---~~~~g~~-~v~~~~~~~~~~~~-~~~~d~vi-d  112 (220)
                      .++|++||=..|++=| -+.+++..+. .++++.+.+..+...+   .+.+|.. .+....+....... .+.||.|+ |
T Consensus       100 ~~~g~~vLD~CAaPGg-Kt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~D  178 (284)
T d1sqga2         100 PQNGEHILDLCAAPGG-KTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLD  178 (284)
T ss_dssp             CCTTCEEEEESCTTCH-HHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEE
T ss_pred             ccccceeEeccCcccc-chhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEe
Confidence            5899999987654423 2334444443 4899999998876554   3466763 22222222212222 23799886 5


Q ss_pred             --cCCCc-------------------------ccHHHHHhccccCCEEEEecCC
Q 027668          113 --TVSAV-------------------------HPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       113 --~~g~~-------------------------~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                        |+|..                         ..+..+++.+++||++|.....
T Consensus       179 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS  232 (284)
T d1sqga2         179 APCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS  232 (284)
T ss_dssp             CCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred             ccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence              55553                         1345677889999999877654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=93.75  E-value=0.03  Score=41.26  Aligned_cols=31  Identities=39%  Similarity=0.509  Sum_probs=28.4

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+|..|+.++.-+...|++|+++.+.+
T Consensus        22 VvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          22 VLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            7889999999999999999999999998764

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.46  Score=35.35  Aligned_cols=100  Identities=16%  Similarity=0.199  Sum_probs=63.5

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc--cHHHHHHHcCCcEEecCCC--------H----------
Q 027668           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS--KKSEAVERLGADSFLVSRD--------Q----------   97 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~--~~~~~~~~~g~~~v~~~~~--------~----------   97 (220)
                      +.+++++.|+.-.+|..|.+++..++.+|.+.+++.....  .....++.+|++.+.....        .          
T Consensus        92 g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~  171 (355)
T d1jbqa_          92 GTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNE  171 (355)
T ss_dssp             TCSCTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHH
T ss_pred             CCcccCceEEEecccchhhHHHHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHHHh
Confidence            4456667766667799999999999999997666665432  2334457899875532110        0          


Q ss_pred             -------------------------HHHHHhcCCccEEEEcCCCcccHHH---HHhccccCCEEEEec
Q 027668           98 -------------------------DEMQAAMGTMDGIIDTVSAVHPLMP---LIGLLKSQGKLVLLG  137 (220)
Q Consensus        98 -------------------------~~~~~~~~~~d~vid~~g~~~~~~~---~~~~l~~~g~iv~~g  137 (220)
                                               +..+++.+.+|.+|-++|+..++.-   .++...+.-+++.+.
T Consensus       172 ~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~ve  239 (355)
T d1jbqa_         172 IPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVD  239 (355)
T ss_dssp             STTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeec
Confidence                                     1112222368999999988754433   344455677777664

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.54  E-value=0.042  Score=41.68  Aligned_cols=32  Identities=25%  Similarity=0.347  Sum_probs=26.3

Q ss_pred             EEEEcCchHHHHHHHHHHH------CCCeEEEEeCCcc
Q 027668           46 VGVVGLGGLGHVAVKFAKA------MGVKVTVISTSPS   77 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~------~g~~v~~~~~~~~   77 (220)
                      |+|+|+||.|++++..+..      .|.+|.++.+...
T Consensus        35 ViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          35 VVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             EEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            7888999999888775554      7899999998754

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.54  E-value=0.41  Score=31.83  Aligned_cols=88  Identities=20%  Similarity=0.228  Sum_probs=50.0

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCC-eEEEEeCCcccHHHH---HHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEA---VERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~---~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      +|.|+|+ |-+|+-+++++..+-. ++..+..+...-+.+   ...+-....+...+.+.+   ..+.|++|-|.+... 
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~---~~~~dvvf~a~p~~~-   78 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKV---SKNCDVLFTALPAGA-   78 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHH---HHHCSEEEECCSTTH-
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHh---ccccceEEEccccHH-
Confidence            5789998 9999999999987755 766665443322222   111112222223333332   226899999998874 


Q ss_pred             HHHHHhccccCCEEEEec
Q 027668          120 LMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv~~g  137 (220)
                      ....... ..+-+++..+
T Consensus        79 s~~~~~~-~~~~~VIDlS   95 (176)
T d1vkna1          79 SYDLVRE-LKGVKIIDLG   95 (176)
T ss_dssp             HHHHHTT-CCSCEEEESS
T ss_pred             HHHHHHh-hccceEEecC
Confidence            3333332 2445555443

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=93.53  E-value=0.013  Score=40.27  Aligned_cols=90  Identities=17%  Similarity=0.117  Sum_probs=55.4

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCc--
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAV--  117 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~--  117 (220)
                      +.|+.+||-+|||. |..+..+     .+++.++.++...+.+ ++-+...+....+  .+....+.||+|+....-.  
T Consensus        34 ~~~~~~vLDiGcG~-G~~~~~~-----~~~~giD~s~~~~~~a-~~~~~~~~~~d~~--~l~~~~~~fD~I~~~~~l~h~  104 (208)
T d1vlma_          34 LLPEGRGVEIGVGT-GRFAVPL-----KIKIGVEPSERMAEIA-RKRGVFVLKGTAE--NLPLKDESFDFALMVTTICFV  104 (208)
T ss_dssp             HCCSSCEEEETCTT-STTHHHH-----TCCEEEESCHHHHHHH-HHTTCEEEECBTT--BCCSCTTCEEEEEEESCGGGS
T ss_pred             hCCCCeEEEECCCC-ccccccc-----ceEEEEeCChhhcccc-ccccccccccccc--ccccccccccccccccccccc
Confidence            45677899999873 6555444     3567888888777665 4545543322211  1111113799998643222  


Q ss_pred             ----ccHHHHHhccccCCEEEEecC
Q 027668          118 ----HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       118 ----~~~~~~~~~l~~~g~iv~~g~  138 (220)
                          ..++.+.+.|++||.++....
T Consensus       105 ~d~~~~l~~~~~~L~pgG~l~i~~~  129 (208)
T d1vlma_         105 DDPERALKEAYRILKKGGYLIVGIV  129 (208)
T ss_dssp             SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccccchhhhhhcCCCCceEEEEec
Confidence                135677889999999987654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.51  E-value=0.044  Score=36.83  Aligned_cols=91  Identities=15%  Similarity=0.154  Sum_probs=50.5

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCC-CeEEEEeC-Cc-----ccHHHHHHHc-CC-c-EEecCCCHHHHHHhcCCccEEEEc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMG-VKVTVIST-SP-----SKKSEAVERL-GA-D-SFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g-~~v~~~~~-~~-----~~~~~~~~~~-g~-~-~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      +|.|+|+ |-+|+-+++++..+- .++..+.. +.     ++.......+ +. + ......+   ......+.|++|-|
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dvvf~a   79 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSD---VRDFSADVDVVFLA   79 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESC---GGGTCTTCCEEEEC
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchh---hhhhhcccceeecc
Confidence            5889998 999999999999884 46654432 11     1222221111 11 1 1111111   11122378999999


Q ss_pred             CCCcccHHHHHhccccCCEEEEecC
Q 027668          114 VSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       114 ~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      .+........-..+..+-+++..+.
T Consensus        80 lp~~~s~~~~~~~~~~~~~vIDlSa  104 (179)
T d2g17a1          80 TAHEVSHDLAPQFLQAGCVVFDLSG  104 (179)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             ccchhHHHHhhhhhhcCceeecccc
Confidence            9887444444445556666666554

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.43  E-value=0.083  Score=39.56  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=44.8

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCe-EEEEeCCcc--cHHHHHHHcC----CcE-EecCCCHHHHHHhcC--CccEEEEc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVK-VTVISTSPS--KKSEAVERLG----ADS-FLVSRDQDEMQAAMG--TMDGIIDT  113 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~-v~~~~~~~~--~~~~~~~~~g----~~~-v~~~~~~~~~~~~~~--~~d~vid~  113 (220)
                      +|||.|+ |-+|..++..+...|.+ |+.+++...  +...+ +.+.    .+. ..|-.+.+.+..+..  .+|+||.+
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   80 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL   80 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHH-HhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence            6899997 99999999999888986 455543221  11112 1121    121 124455666655443  79999999


Q ss_pred             CCCc
Q 027668          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      ++..
T Consensus        81 Aa~~   84 (361)
T d1kewa_          81 AAES   84 (361)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            8653

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=93.19  E-value=0.03  Score=38.27  Aligned_cols=33  Identities=12%  Similarity=0.075  Sum_probs=26.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVI   72 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~   72 (220)
                      +..++.+++.|+|++|++++|+++.+|++.++.
T Consensus       160 i~~~~~~~i~g~g~~g~~aiq~a~~~g~~~iia  192 (194)
T d1f8fa1         160 FPFDQLVKFYAFDEINQAAIDSRKGITLKPIIK  192 (194)
T ss_dssp             CCGGGGEEEEEGGGHHHHHHHHHHTSCSEEEEE
T ss_pred             CCcccEEEEeCcHHHHHHHHHHHHHcCCCEEEE
Confidence            344666777788999999999999999955443

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.18  E-value=0.059  Score=38.32  Aligned_cols=30  Identities=30%  Similarity=0.348  Sum_probs=27.6

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      ++|+|+|+.|+.++..+...|.+|.++++.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            578899999999999999999999999874

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.11  E-value=0.097  Score=38.77  Aligned_cols=74  Identities=19%  Similarity=0.175  Sum_probs=46.7

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCe--EEEEeCCcc--cHHHHHHHcC--CcEE-ecCCCHHHHHHhcCCccEEEEcCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVK--VTVISTSPS--KKSEAVERLG--ADSF-LVSRDQDEMQAAMGTMDGIIDTVS  115 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~--v~~~~~~~~--~~~~~~~~~g--~~~v-~~~~~~~~~~~~~~~~d~vid~~g  115 (220)
                      .+|||.|+ |-+|..++..+...|.+  +++++....  .........+  .+.+ .|-.+.+.+.++..++|.|+.++.
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~a~   82 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA   82 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhhhh
Confidence            57999997 99999999988888875  555443211  1111111122  2222 344567777777778999988876


Q ss_pred             Cc
Q 027668          116 AV  117 (220)
Q Consensus       116 ~~  117 (220)
                      ..
T Consensus        83 ~~   84 (346)
T d1oc2a_          83 ES   84 (346)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.10  E-value=0.33  Score=32.75  Aligned_cols=100  Identities=18%  Similarity=0.208  Sum_probs=57.9

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHc---CCc-EEecCCCH--HH-HHHhc-CCccEE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERL---GAD-SFLVSRDQ--DE-MQAAM-GTMDGI  110 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~---g~~-~v~~~~~~--~~-~~~~~-~~~d~v  110 (220)
                      .++|+.++=.++|.=|... .+++.. +.+|++++.+++..+.+.+.+   +.. ..++....  +. ..... +.+|.|
T Consensus        21 ~~~~~~~lD~t~G~Gghs~-~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgI   99 (192)
T d1m6ya2          21 PEDEKIILDCTVGEGGHSR-AILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGI   99 (192)
T ss_dssp             CCTTCEEEETTCTTSHHHH-HHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEE
T ss_pred             CCCCCEEEEecCCCcHHHH-HHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCccee
Confidence            5788876554445434433 444443 569999999999877765543   322 23333221  22 22222 378888


Q ss_pred             EEcCCCc---------------ccHHHHHhccccCCEEEEecCCC
Q 027668          111 IDTVSAV---------------HPLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       111 id~~g~~---------------~~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      +--.|-+               ..+..+.+.++++|+++.+.+..
T Consensus       100 l~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2         100 LMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             EEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             eeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            5334432               13456777888999988776543

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.07  E-value=0.063  Score=38.22  Aligned_cols=31  Identities=23%  Similarity=0.438  Sum_probs=28.3

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      ++|+|+|+.|+.++..+..+|.+|.++.+.+
T Consensus        45 vvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7888999999999999999999999998764

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.04  E-value=0.14  Score=33.85  Aligned_cols=92  Identities=15%  Similarity=0.124  Sum_probs=51.5

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC--C--eEEEEeCCcccH-----------HHHHHHcCCcEEecCCCHHHHHHh-cC--C
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG--V--KVTVISTSPSKK-----------SEAVERLGADSFLVSRDQDEMQAA-MG--T  106 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g--~--~v~~~~~~~~~~-----------~~~~~~~g~~~v~~~~~~~~~~~~-~~--~  106 (220)
                      +|.|+|.|.+|..+++++....  .  ++..+..+....           ......+... .......+.+.+. .+  .
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   84 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAAS-TTKTLPLDDLIAHLKTSPK   84 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTC-CCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhc-ccccccHHHHHHHhccCCC
Confidence            4678899999999998777543  3  455554432210           0000111111 0111122222222 22  6


Q ss_pred             ccEEEEcCCCcccHHHHHhccccCCEEEEec
Q 027668          107 MDGIIDTVSAVHPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       107 ~d~vid~~g~~~~~~~~~~~l~~~g~iv~~g  137 (220)
                      .++++||.++.+......+.|+.|-++|...
T Consensus        85 ~~vivd~t~~~~~~~~~~~aL~~G~hVVTAN  115 (168)
T d1ebfa1          85 PVILVDNTSSAYIAGFYTKFVENGISIATPN  115 (168)
T ss_dssp             CEEEEECSCCHHHHTTHHHHHHTTCEEECCC
T ss_pred             ceEEEEecCChHHHHHHHHHHHcCCeEEecC
Confidence            7899999998876666667788887877653

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.02  E-value=0.095  Score=38.69  Aligned_cols=33  Identities=15%  Similarity=0.098  Sum_probs=29.7

Q ss_pred             CCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC
Q 027668           43 GMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        43 ~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      -++|||.|+ |-+|..++..+...|.+|+++++.
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~   49 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNF   49 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            378999997 999999999999999999999863

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.00  E-value=0.059  Score=39.10  Aligned_cols=31  Identities=19%  Similarity=0.313  Sum_probs=26.9

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      .|+|+|+|.+|++++.-+...|. +|.+++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            48999999999999988888897 69888875

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.94  E-value=0.13  Score=38.74  Aligned_cols=91  Identities=15%  Similarity=0.078  Sum_probs=60.2

Q ss_pred             EcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHc---CCc----------------EEecCCCHH-HHHHhcCCc
Q 027668           49 VGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL---GAD----------------SFLVSRDQD-EMQAAMGTM  107 (220)
Q Consensus        49 ~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~---g~~----------------~v~~~~~~~-~~~~~~~~~  107 (220)
                      .+-+.+|.-.++.++..|+ +|++.+.+++..+.+.+.+   +..                ...+..+.. .+.+....|
T Consensus        51 D~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~~~~~f  130 (375)
T d2dula1          51 DALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAERHRYF  130 (375)
T ss_dssp             ESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHSTTCE
T ss_pred             EcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHhhcCcC
Confidence            3446678899999998888 8999999988776665433   111                111122222 222323479


Q ss_pred             cEE-EEcCCCcc-cHHHHHhccccCCEEEEecCC
Q 027668          108 DGI-IDTVSAVH-PLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       108 d~v-id~~g~~~-~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      |+| +|..|.+. -++.++++++.+|-+......
T Consensus       131 DvIDiDPfGs~~pfldsAi~a~~~~Gll~vTaTD  164 (375)
T d2dula1         131 HFIDLDPFGSPMEFLDTALRSAKRRGILGVTATD  164 (375)
T ss_dssp             EEEEECCSSCCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CcccCCCCCCcHHHHHHHHHHhccCCEEEEEecC
Confidence            987 68888753 367899999999888877553

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.83  E-value=0.016  Score=36.67  Aligned_cols=82  Identities=15%  Similarity=0.175  Sum_probs=50.6

Q ss_pred             CEEEEEcCchHHHHHHHHHH-HCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhc-CCccEEEEcCCCcccHH
Q 027668           44 MHVGVVGLGGLGHVAVKFAK-AMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAM-GTMDGIIDTVSAVHPLM  121 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~-~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~-~~~d~vid~~g~~~~~~  121 (220)
                      .+|+|+|+|..|.++++... ..|++++++..++.+...  +....-.|+..++   +.+.. +..++++-++.... .+
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G--~~I~Gi~V~~~~~---l~~~~~~~i~iai~~i~~~~-~~   77 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVG--RPVRGGVIEHVDL---LPQRVPGRIEIALLTVPREA-AQ   77 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTT--CEETTEEEEEGGG---HHHHSTTTCCEEEECSCHHH-HH
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcC--CEECCEEEecHHH---HHHHHhhcccEEEEeCCHHH-HH
Confidence            47999999999998877443 446688877766553322  2333345664433   33333 37888888887653 55


Q ss_pred             HHHhccccCC
Q 027668          122 PLIGLLKSQG  131 (220)
Q Consensus       122 ~~~~~l~~~g  131 (220)
                      ...+.+-..|
T Consensus        78 ~I~d~l~~~g   87 (126)
T d2dt5a2          78 KAADLLVAAG   87 (126)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            5555554444

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.07  Score=39.46  Aligned_cols=73  Identities=15%  Similarity=0.114  Sum_probs=45.4

Q ss_pred             EE-EEEcC-chHHHHHHHHHHHCCCeEEEEeCCccc-----HHHHH----HHc--CCcEE-ecCCCHHHHHHhcC--Ccc
Q 027668           45 HV-GVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSK-----KSEAV----ERL--GADSF-LVSRDQDEMQAAMG--TMD  108 (220)
Q Consensus        45 ~v-lI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~-----~~~~~----~~~--g~~~v-~~~~~~~~~~~~~~--~~d  108 (220)
                      +| ||.|+ |-+|..++..+...|++|+++++....     .+.+.    ...  +...+ .|-.+.+.+..+..  +++
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~   81 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcccc
Confidence            46 89997 999999999999999999999986431     11110    011  11111 13345555554433  778


Q ss_pred             EEEEcCCCc
Q 027668          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~vid~~g~~  117 (220)
                      +++.+++..
T Consensus        82 ~v~~~~a~~   90 (347)
T d1t2aa_          82 EIYNLGAQS   90 (347)
T ss_dssp             EEEECCSCC
T ss_pred             eeeeeeecc
Confidence            888776653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.63  E-value=0.055  Score=32.95  Aligned_cols=36  Identities=19%  Similarity=0.052  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      .|++|+|+|+|..|.-++.-+...+.+++...+.+.
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~   66 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG   66 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence            689999999998888777766666667666665543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=92.58  E-value=0.27  Score=36.05  Aligned_cols=97  Identities=14%  Similarity=0.066  Sum_probs=59.4

Q ss_pred             CCCCCCEEEEEcC--chHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHc---CC----cEEecCCCHHHHHHhc---C
Q 027668           39 LDKPGMHVGVVGL--GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERL---GA----DSFLVSRDQDEMQAAM---G  105 (220)
Q Consensus        39 ~~~~~~~vlI~G~--g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~---g~----~~v~~~~~~~~~~~~~---~  105 (220)
                      .+.+|++||=..+  |+.++   . +...|+ +|+.++.++...+.+.+.+   |.    ..++..+..+.++...   .
T Consensus       141 ~~~~g~~VLdlf~~~G~~sl---~-aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~  216 (317)
T d2b78a2         141 GSAAGKTVLNLFSYTAAFSV---A-AAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHL  216 (317)
T ss_dssp             TTTBTCEEEEETCTTTHHHH---H-HHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred             HhhCCCceeecCCCCcHHHH---H-HHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcC
Confidence            3678999998865  44443   2 334677 7999999988766654433   22    1233333345554432   3


Q ss_pred             CccEEEEcCC---C------------cccHHHHHhccccCCEEEEecCC
Q 027668          106 TMDGIIDTVS---A------------VHPLMPLIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       106 ~~d~vid~~g---~------------~~~~~~~~~~l~~~g~iv~~g~~  139 (220)
                      .||+||---.   .            ...+..+++++++||.++.+...
T Consensus       217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            7999984211   1            01345678899999999987653

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.50  E-value=0.24  Score=32.03  Aligned_cols=91  Identities=18%  Similarity=0.134  Sum_probs=51.3

Q ss_pred             CCCCEEEEEcC--chHHHHHHHHHHHCCC-eEEEEeCCcccHHHHH---HHcCC---cEEecCCCHHHHHHhcCCccEEE
Q 027668           41 KPGMHVGVVGL--GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAV---ERLGA---DSFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        41 ~~~~~vlI~G~--g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~---~~~g~---~~v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      -.|.+||=+|+  |.+|+   . |..+|+ +|+.++.+++..+.+.   +.++.   ..++..+..+.++...+.||+||
T Consensus        13 ~~g~~vlDl~~GtG~~~i---e-a~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf   88 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAI---E-AVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVF   88 (152)
T ss_dssp             CCSCEEEEETCTTCHHHH---H-HHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEE
T ss_pred             CCCCeEEEcCCccCHHHH---H-HHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeE
Confidence            46888888865  55554   3 234787 8999999877654432   34453   23444333344545456899998


Q ss_pred             EcCCCc-c----cHHHH--HhccccCCEEEE
Q 027668          112 DTVSAV-H----PLMPL--IGLLKSQGKLVL  135 (220)
Q Consensus       112 d~~g~~-~----~~~~~--~~~l~~~g~iv~  135 (220)
                      ---... .    .+...  .+.|+++|.++.
T Consensus        89 ~DPPy~~~~~~~~l~~i~~~~~L~~~g~iii  119 (152)
T d2esra1          89 LDPPYAKETIVATIEALAAKNLLSEQVMVVC  119 (152)
T ss_dssp             ECCSSHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             echhhccchHHHHHHHHHHCCCcCCCeEEEE
Confidence            432211 1    12222  234677777764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=92.40  E-value=0.11  Score=36.25  Aligned_cols=31  Identities=29%  Similarity=0.355  Sum_probs=28.0

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      |+|+|+|+-|+.++..+...|+++.++..+.
T Consensus         5 VIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           5 VLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            6788999999999999999999999988764

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=92.31  E-value=0.58  Score=34.26  Aligned_cols=108  Identities=19%  Similarity=0.200  Sum_probs=65.9

Q ss_pred             hhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc--cHHHHHHHcCCcEEecCCCHH---------
Q 027668           30 VYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS--KKSEAVERLGADSFLVSRDQD---------   98 (220)
Q Consensus        30 a~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~--~~~~~~~~~g~~~v~~~~~~~---------   98 (220)
                      |++.+.....-.+...|+.-.+|..|.+++..++..|.+++++.....  ......+.+|++.+....+.+         
T Consensus        62 a~~~i~~~~~~~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~  141 (331)
T d1tdja1          62 AYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIEL  141 (331)
T ss_dssp             HHHHHHTTTTSSCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhhhh
Confidence            445554443223444555556799999999999999997766665433  334455788988664433210         


Q ss_pred             --------------------------HHHHhcCCccEEEEcCCCcccHH---HHHhccccCCEEEEec
Q 027668           99 --------------------------EMQAAMGTMDGIIDTVSAVHPLM---PLIGLLKSQGKLVLLG  137 (220)
Q Consensus        99 --------------------------~~~~~~~~~d~vid~~g~~~~~~---~~~~~l~~~g~iv~~g  137 (220)
                                                ++.+-.+.+|.+|-++|+..++.   ..++.+.+..+++.+.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve  209 (331)
T d1tdja1         142 SQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVE  209 (331)
T ss_dssp             HHHHCCEECCSSCCHHHHHHHHHHHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             hhcCCCccccccCChHHhhhhhhHHHHHHHhcCCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEec
Confidence                                      11111136999999998875443   3444455677777664

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=92.17  E-value=0.15  Score=32.97  Aligned_cols=87  Identities=20%  Similarity=0.209  Sum_probs=45.5

Q ss_pred             EEEEEcC-chHHHHHHHHHHH-CC---CeEEEEeCCcccHHHHHHHcCCc--EEecCCCHHHHHHhcCCccEEEEcCCCc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKA-MG---VKVTVISTSPSKKSEAVERLGAD--SFLVSRDQDEMQAAMGTMDGIIDTVSAV  117 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~-~g---~~v~~~~~~~~~~~~~~~~~g~~--~v~~~~~~~~~~~~~~~~d~vid~~g~~  117 (220)
                      +|.|+|+ |-+|+-+++++.. ..   .++..+..+...-..  -.++..  .+....+.+.    ..+.|++|-|++..
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~--~~~~~~~~~~~~~~~~~~----~~~~DvvF~alp~~   75 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPA--PNFGKDAGMLHDAFDIES----LKQLDAVITCQGGS   75 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBC--CCSSSCCCBCEETTCHHH----HTTCSEEEECSCHH
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccc--cccCCcceeeecccchhh----hccccEEEEecCch
Confidence            5889998 9999999986543 22   366555544321111  112211  1111112222    25789999999987


Q ss_pred             ccHHHHHhccccCCE--EEEec
Q 027668          118 HPLMPLIGLLKSQGK--LVLLG  137 (220)
Q Consensus       118 ~~~~~~~~~l~~~g~--iv~~g  137 (220)
                      ...+..-..++.+-+  ++..+
T Consensus        76 ~s~~~~~~l~~~g~~~~VIDlS   97 (147)
T d1mb4a1          76 YTEKVYPALRQAGWKGYWIDAA   97 (147)
T ss_dssp             HHHHHHHHHHHTTCCSEEEESS
T ss_pred             HHHHHhHHHHHcCCceEEEeCC
Confidence            433333333444423  44443

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.12  E-value=0.09  Score=34.36  Aligned_cols=31  Identities=32%  Similarity=0.280  Sum_probs=25.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      .+|+|+|+|.+|+-++..++. +.+|+++.+.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEecc
Confidence            478999999999998887754 6789888764

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.1  Score=38.56  Aligned_cols=73  Identities=21%  Similarity=0.157  Sum_probs=46.9

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCC----------cccHHHHHHHc---CCcEE-ecCCCHHHHHHhcC--C
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTS----------PSKKSEAVERL---GADSF-LVSRDQDEMQAAMG--T  106 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~----------~~~~~~~~~~~---g~~~v-~~~~~~~~~~~~~~--~  106 (220)
                      ++|||.|+ |-+|..++..+...|.+|+++++.          .+..... +.+   ....+ .|-.+.+.+.+...  .
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   81 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRV-QELTGRSVEFEEMDILDQGALQRLFKKYS   81 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHH-HHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHH-HHhcCCCcEEEEeeccccccccccccccc
Confidence            68999997 999999999999999999998641          1111111 111   12222 24455666655432  6


Q ss_pred             ccEEEEcCCCc
Q 027668          107 MDGIIDTVSAV  117 (220)
Q Consensus       107 ~d~vid~~g~~  117 (220)
                      +++++.+++..
T Consensus        82 ~~~i~h~Aa~~   92 (346)
T d1ek6a_          82 FMAVIHFAGLK   92 (346)
T ss_dssp             EEEEEECCSCC
T ss_pred             ccccccccccc
Confidence            77888877653

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.0082  Score=43.29  Aligned_cols=46  Identities=15%  Similarity=0.040  Sum_probs=32.0

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL   86 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~   86 (220)
                      ...|.++|-+|+|+ |...+..+...+.+|+.++-++..++.+.+.+
T Consensus        52 ~~~g~~vLDiGcG~-g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~   97 (263)
T d2g72a1          52 EVSGRTLIDIGSGP-TVYQLLSACSHFEDITMTDFLEVNRQELGRWL   97 (263)
T ss_dssp             CSCCSEEEEETCTT-CCGGGTTGGGGCSEEEEECSCHHHHHHHHHHH
T ss_pred             CCCCcEEEEeccCC-CHHHHHHhcccCCeEEEEeCCHHHHHHHHHHH
Confidence            36788999999976 44333344444558999999988777775444

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.019  Score=38.06  Aligned_cols=93  Identities=19%  Similarity=0.267  Sum_probs=52.2

Q ss_pred             EEEEEcC-chHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHHHcC----CcEEecCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVERLG----ADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~~~g----~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      +|.|+|+ |-+|+++++.+... +++++....++... ..-+.+|    .... ...-.+........+|++||.+... 
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~-~~g~d~~~~~~~~~~-~~~~~~~~~~~~~~~DViIDFs~p~-   82 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSS-LLGSDAGELAGAGKT-GVTVQSSLDAVKDDFDVFIDFTRPE-   82 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCT-TCSCCTTCSSSSSCC-SCCEESCSTTTTTSCSEEEECSCHH-
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccch-hccchhhhhhccccC-CceeeccHHHHhcccceEEEeccHH-
Confidence            5788997 99999999988875 55766554433211 0000111    0000 0000011112334789999998775 


Q ss_pred             cHHHHHhccccCCEEEEecCCC
Q 027668          119 PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       119 ~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .....++.....|.=+.+|..+
T Consensus        83 ~~~~~~~~a~~~~~~~ViGTTG  104 (162)
T d1diha1          83 GTLNHLAFCRQHGKGMVIGTTG  104 (162)
T ss_dssp             HHHHHHHHHHHTTCEEEECCCC
T ss_pred             HHHHHHHHHHhccceeEEecCC
Confidence            4566666666667666777654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.13  Score=32.66  Aligned_cols=37  Identities=19%  Similarity=0.248  Sum_probs=28.2

Q ss_pred             CCCCEEEEEcCchHHHHHHHHH----HHCCCeEEEEeCCcc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFA----KAMGVKVTVISTSPS   77 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~----~~~g~~v~~~~~~~~   77 (220)
                      ++.++++|+|+|.+|.-++..+    +..|.+|+++.+.+.
T Consensus        35 ~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          35 REVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             HHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             hcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            4578999999999996655443    457999998887653

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.83  E-value=0.5  Score=32.37  Aligned_cols=95  Identities=17%  Similarity=0.261  Sum_probs=55.2

Q ss_pred             CCCEEEEE-cC---chHHHHHHHHHHHCCCeEEEEeCCcccHHH------HHHHcCCcEEecCCCHHHHHHhcCCccEEE
Q 027668           42 PGMHVGVV-GL---GGLGHVAVKFAKAMGVKVTVISTSPSKKSE------AVERLGADSFLVSRDQDEMQAAMGTMDGII  111 (220)
Q Consensus        42 ~~~~vlI~-G~---g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~------~~~~~g~~~v~~~~~~~~~~~~~~~~d~vi  111 (220)
                      +..+|+|+ |.   |+=|+.+++.++..|++|.++...+.....      +.++++...+ +..+..    ....+|+++
T Consensus        39 ~~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~dlII  113 (211)
T d2ax3a2          39 SDYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVV-EQFEPS----ILNEFDVVV  113 (211)
T ss_dssp             TTCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEE-SCCCGG----GGGGCSEEE
T ss_pred             cCCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccCCcHHHHHHHHHHHcCCccc-cccccc----cccCceEEE
Confidence            34566664 63   577799999999999988877665443222      2234444433 222221    123689999


Q ss_pred             EcCCCc-------ccHHHHHhccccC-CEEEEecCCCC
Q 027668          112 DTVSAV-------HPLMPLIGLLKSQ-GKLVLLGAPEK  141 (220)
Q Consensus       112 d~~g~~-------~~~~~~~~~l~~~-g~iv~~g~~~~  141 (220)
                      |+.-+.       ..+...++.++.. ..++.+..+++
T Consensus       114 Dal~G~Gl~~~l~~~~~~~i~~iN~~~~~vlsiDiPSG  151 (211)
T d2ax3a2         114 DAIFGTGLRGEITGEYAEIINLVNKSGKVVVSVDVPSG  151 (211)
T ss_dssp             EESCCTTCCSCCCHHHHHHHHHHHHSCCEEEEESSCTT
T ss_pred             EecccCCccccchHHHHHHHHHHHhhccceeeeccCcc
Confidence            997321       1244555556544 45666666653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.52  E-value=0.071  Score=34.87  Aligned_cols=40  Identities=23%  Similarity=0.417  Sum_probs=31.8

Q ss_pred             hhhhhhHhccCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEE
Q 027668           29 TVYSPLRFYGLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVT   70 (220)
Q Consensus        29 ta~~~l~~~~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~   70 (220)
                      +++..|.  .....|++|+|+|+|.+|.-++..+...|+++.
T Consensus        17 ~a~d~L~--~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2          17 SYLDVLR--DKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTS   56 (162)
T ss_dssp             EHHHHHT--SCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             EHHHHhh--CccccCCceEEEcCchhHHHHHHHHHHcCCccc
Confidence            3444454  335789999999999999999999999998543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=91.49  E-value=0.51  Score=31.09  Aligned_cols=74  Identities=23%  Similarity=0.403  Sum_probs=44.5

Q ss_pred             CCCEEEEEcCchHHHHHH---HHHHH--C-CCeEEEEeCCcccHHHH-------HHHcCCc-EEecCCCHHHHHHhcCCc
Q 027668           42 PGMHVGVVGLGGLGHVAV---KFAKA--M-GVKVTVISTSPSKKSEA-------VERLGAD-SFLVSRDQDEMQAAMGTM  107 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~---~~~~~--~-g~~v~~~~~~~~~~~~~-------~~~~g~~-~v~~~~~~~~~~~~~~~~  107 (220)
                      |+-+|.|+|+|++|....   .+++.  + +-+++.++.++++.+..       ...++.. .+....+   .++...+.
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td---~~eaL~da   77 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMN---LDDVIIDA   77 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESC---HHHHHTTC
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCC---hhhcccCC
Confidence            456899999999985432   23332  2 34899999987764331       2234432 2222222   22334689


Q ss_pred             cEEEEcCCCcc
Q 027668          108 DGIIDTVSAVH  118 (220)
Q Consensus       108 d~vid~~g~~~  118 (220)
                      |+|+.+++...
T Consensus        78 d~Vv~~~~~g~   88 (171)
T d1obba1          78 DFVINTAMVGG   88 (171)
T ss_dssp             SEEEECCCTTH
T ss_pred             CeEeeeccccc
Confidence            99999987763

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.079  Score=39.11  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=28.7

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      |||+|+|.-|+.++.-+...|.+|+++++.+.
T Consensus        10 VlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~   41 (330)
T d1neka2          10 AVVIGAGGAGMRAALQISQSGQTCALLSKVFP   41 (330)
T ss_dssp             CEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            68899999999999999999999999987654

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=91.24  E-value=1  Score=32.60  Aligned_cols=55  Identities=22%  Similarity=0.234  Sum_probs=38.0

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc--ccHHHHHHHcCCcEEe
Q 027668           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP--SKKSEAVERLGADSFL   92 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~--~~~~~~~~~~g~~~v~   92 (220)
                      +.+.+++.|+...+|.-|++++..++..|.+.+++....  .......+.+|++.+.
T Consensus        56 g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~  112 (310)
T d1y7la1          56 GTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVL  112 (310)
T ss_dssp             TSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             CCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEe
Confidence            445677776666779999999999999999655554432  2233344788887553

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.24  E-value=0.16  Score=35.10  Aligned_cols=93  Identities=20%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHC--CCeEEEEeCCcccHHHHH---HHcCCc---EEecCCCHHHHHHhc-----CCcc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAM--GVKVTVISTSPSKKSEAV---ERLGAD---SFLVSRDQDEMQAAM-----GTMD  108 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~~~~~~~~---~~~g~~---~v~~~~~~~~~~~~~-----~~~d  108 (220)
                      +-++||-+|+|. |..++.+++++  +.+++.++.+++..+.+.   +..|..   .++.....+.+.++.     +.||
T Consensus        56 kpk~ILEiGt~~-G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D  134 (214)
T d2cl5a1          56 SPSLVLELGAYC-GYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLD  134 (214)
T ss_dssp             CCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEE
T ss_pred             CCCEEEEEccCc-hhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccc
Confidence            337899999753 66677777765  569999999887555442   344531   222222233332221     2699


Q ss_pred             EEEEcCCCccc-----HHHHHhccccCCEEEE
Q 027668          109 GIIDTVSAVHP-----LMPLIGLLKSQGKLVL  135 (220)
Q Consensus       109 ~vid~~g~~~~-----~~~~~~~l~~~g~iv~  135 (220)
                      ++|--......     +...++.+++||.++.
T Consensus       135 ~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         135 MVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             eeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            88744332211     3345667999997654

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.23  E-value=0.28  Score=32.34  Aligned_cols=72  Identities=11%  Similarity=0.212  Sum_probs=41.9

Q ss_pred             CCEEEEEcCchHHHH--HHHHHHHC-C---CeEEEEeCCcccHHHH-------HHHcCCc-EEecCCCHHHHHHhcCCcc
Q 027668           43 GMHVGVVGLGGLGHV--AVKFAKAM-G---VKVTVISTSPSKKSEA-------VERLGAD-SFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~--~~~~~~~~-g---~~v~~~~~~~~~~~~~-------~~~~g~~-~v~~~~~~~~~~~~~~~~d  108 (220)
                      .-+|.|+|+|++|..  ...+++.. .   .+++..+.++++.+..       ...++.. .+....+   ..+...+.|
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~eal~~AD   79 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTD---PEEAFTDVD   79 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESC---HHHHHSSCS
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCC---hhhccCCCC
Confidence            446889999877633  33444332 2   3788999888765422       1222332 2322222   223345899


Q ss_pred             EEEEcCCCc
Q 027668          109 GIIDTVSAV  117 (220)
Q Consensus       109 ~vid~~g~~  117 (220)
                      +|+.++|..
T Consensus        80 ~Vvitag~~   88 (167)
T d1u8xx1          80 FVMAHIRVG   88 (167)
T ss_dssp             EEEECCCTT
T ss_pred             EEEECCCcC
Confidence            999999875

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=91.13  E-value=1.1  Score=28.41  Aligned_cols=68  Identities=15%  Similarity=0.170  Sum_probs=41.3

Q ss_pred             EEEEEc-CchHHHHHHHHHHHCCC--eEEEEeCCc--ccHH----HHHHH--cCC-cEEecCCCHHHHHHhcCCccEEEE
Q 027668           45 HVGVVG-LGGLGHVAVKFAKAMGV--KVTVISTSP--SKKS----EAVER--LGA-DSFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        45 ~vlI~G-~g~~G~~~~~~~~~~g~--~v~~~~~~~--~~~~----~~~~~--~g~-~~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      +|.|+| +|.+|..++..+...+.  ++...+...  +..+    .+...  +.. ..+. ..+.+.    ..+.|+|+-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~-~~~~~~----~~~aDiVvi   76 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVR-QGGYED----TAGSDVVVI   76 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEE-ECCGGG----GTTCSEEEE
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEe-eCCHHH----hhhcCEEEE
Confidence            688999 59999999999998887  677776432  1111    11111  111 2222 222221    248999999


Q ss_pred             cCCCc
Q 027668          113 TVSAV  117 (220)
Q Consensus       113 ~~g~~  117 (220)
                      ++|.+
T Consensus        77 taG~~   81 (142)
T d1o6za1          77 TAGIP   81 (142)
T ss_dssp             CCCCC
T ss_pred             ecccc
Confidence            98864

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=91.04  E-value=0.36  Score=31.19  Aligned_cols=44  Identities=20%  Similarity=0.211  Sum_probs=32.9

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA   88 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~   88 (220)
                      ++|-++|.|.+|...++-+...|.. ++..++.++...+.++.+.
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~g~~-~~~~~~~~~~~~~~~~~~~   44 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARRFPT-LVWNRTFEKALRHQEEFGS   44 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTTSCE-EEECSSTHHHHHHHHHHCC
T ss_pred             CeEEEEeHHHHHHHHHHHHHhCCCE-EEEeCCHHHHHHHHHHcCC
Confidence            4688999999999988888766764 4677777776666666554

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.73  E-value=0.12  Score=37.76  Aligned_cols=34  Identities=29%  Similarity=0.327  Sum_probs=27.5

Q ss_pred             CEEEEEcCchHHHHHHHHHHH--CCCeEEEEeCCcc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKA--MGVKVTVISTSPS   77 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~--~g~~v~~~~~~~~   77 (220)
                      .-|+|+|+|+.|+.++..+..  .|.+|.++.+.+.
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            348999999999998886663  4889999988643

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.70  E-value=0.21  Score=34.68  Aligned_cols=24  Identities=8%  Similarity=0.073  Sum_probs=21.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAM   65 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~   65 (220)
                      +|++|+|+|+|.+++=+++++...
T Consensus        38 ~gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          38 SCDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSC
T ss_pred             cCceEEEECCchhHHHHHHHHhcC
Confidence            589999999999999999988863

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.69  E-value=0.17  Score=34.09  Aligned_cols=32  Identities=19%  Similarity=0.069  Sum_probs=26.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC--eEEEEeCCc
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV--KVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~~~   76 (220)
                      +|+|+|+|.+|+.++.-++.++.  +|+++.+.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            58999999999999998887754  788887643

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.67  E-value=0.83  Score=33.94  Aligned_cols=31  Identities=26%  Similarity=0.386  Sum_probs=25.1

Q ss_pred             CEEEEEcC-chHHHHHHH-HHHHCCCeEEEEeC
Q 027668           44 MHVGVVGL-GGLGHVAVK-FAKAMGVKVTVIST   74 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~-~~~~~g~~v~~~~~   74 (220)
                      -+|||.|+ |-+|..++. |++..|.+|++++.
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            47999997 999988776 55668899999863

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.55  E-value=0.019  Score=40.13  Aligned_cols=24  Identities=21%  Similarity=0.174  Sum_probs=21.2

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCe
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVK   68 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~   68 (220)
                      +|+|+|+|.+|+.++..++..|.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~   25 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHS   25 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCC
Confidence            589999999999999988888864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=90.43  E-value=0.047  Score=36.51  Aligned_cols=27  Identities=22%  Similarity=0.137  Sum_probs=22.6

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEE
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTV   71 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~   71 (220)
                      .|+|+|+|.+|+-++..++.+|.++.+
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i   31 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLI   31 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCE
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEE
Confidence            489999999999999999988874433

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.41  E-value=0.78  Score=34.45  Aligned_cols=55  Identities=16%  Similarity=0.094  Sum_probs=38.3

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCC--cccHHHHHHHcCCcEEec
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTS--PSKKSEAVERLGADSFLV   93 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~--~~~~~~~~~~~g~~~v~~   93 (220)
                      .++++..|+--.+|..|++++..++.+|.+++++...  +.......+.+|++.+..
T Consensus       140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~Iv~P~~~~~~K~~~ira~GAeVi~~  196 (382)
T d1wkva1         140 RVEKGSLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVD  196 (382)
T ss_dssp             TSCTTCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEeeccccccccccccccCcceeec
Confidence            3577776544456999999999999999976666553  223334457899876543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.25  E-value=1.4  Score=28.04  Aligned_cols=68  Identities=18%  Similarity=0.257  Sum_probs=39.8

Q ss_pred             EEEEEcC-chHHHHHHHHHH-HCC--CeEEEEeCCcccHHHHHHHcC-C-----cEEec-CCCHHHHHHhcCCccEEEEc
Q 027668           45 HVGVVGL-GGLGHVAVKFAK-AMG--VKVTVISTSPSKKSEAVERLG-A-----DSFLV-SRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~-~~g--~~v~~~~~~~~~~~~~~~~~g-~-----~~v~~-~~~~~~~~~~~~~~d~vid~  113 (220)
                      +|.|+|+ |.+|..++.++. ..+  .++...+..+....++ ..+. +     ...+. ..+.+    ...+.|+|+-+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a-~Dl~h~~~~~~~~~~~~~~~~~----~~~~aDvvvit   76 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVA-VDLSHIPTAVKIKGFSGEDATP----ALEGADVVLIS   76 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHH-HHHHTSCSSCEEEEECSSCCHH----HHTTCSEEEEC
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHH-HHHHCCccccCCcEEEcCCCcc----ccCCCCEEEEC
Confidence            5789995 999988887654 444  3788887654322222 2221 1     12222 11222    23479999999


Q ss_pred             CCCc
Q 027668          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      +|.+
T Consensus        77 aG~~   80 (145)
T d2cmda1          77 AGVR   80 (145)
T ss_dssp             CSCC
T ss_pred             CCcc
Confidence            9875

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.19  E-value=0.28  Score=33.72  Aligned_cols=35  Identities=17%  Similarity=0.348  Sum_probs=28.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHH--------------------HCCC-eEEEEeCCc
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAK--------------------AMGV-KVTVISTSP   76 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~--------------------~~g~-~v~~~~~~~   76 (220)
                      .|++|+|+|+|.+++=+++++.                    ..|+ +|+++.+..
T Consensus        38 ~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg   93 (216)
T d1lqta1          38 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG   93 (216)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC
T ss_pred             cCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECC
Confidence            5899999999999999988776                    5677 677777753

>d1jzta_ c.104.1.1 (A:) Hypothetical protein YNL200c (YNU0_YEAST) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein YNL200c (YNU0 YEAST)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.01  E-value=1.4  Score=30.74  Aligned_cols=99  Identities=19%  Similarity=0.261  Sum_probs=55.0

Q ss_pred             CCCEEEEE-cC---chHHHHHHHHHHHCCCeEEEEeCCcccH-H------HHHHHcCCcEEecCCCHHHHHH-hcCCccE
Q 027668           42 PGMHVGVV-GL---GGLGHVAVKFAKAMGVKVTVISTSPSKK-S------EAVERLGADSFLVSRDQDEMQA-AMGTMDG  109 (220)
Q Consensus        42 ~~~~vlI~-G~---g~~G~~~~~~~~~~g~~v~~~~~~~~~~-~------~~~~~~g~~~v~~~~~~~~~~~-~~~~~d~  109 (220)
                      ++.+|+|+ |.   |+=|+++++.++..|.+|.++....... +      ...+.++.... ...+.+.... ....+|+
T Consensus        54 ~~~~vlil~G~GNNGGDGl~~Ar~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~  132 (243)
T d1jzta_          54 KGKHVFVIAGPGNNGGDGLVCARHLKLFGYNPVVFYPKRSERTEFYKQLVHQLNFFKVPVL-SQDEGNWLEYLKPEKTLC  132 (243)
T ss_dssp             HTCEEEEEECSSHHHHHHHHHHHHHHHTTCCEEEECCCCCTTCHHHHHHHHHHHHTTCCEE-CSSTTCGGGGGSTTTEEE
T ss_pred             CCCeEEEEECCCCccHHHHHHHHHHHhcCCeeEEEEeCCCcCCHHHHHHHHHHHHCCCcee-cccccchhhccccccccE
Confidence            34677775 53   6778999999999999776665443211 1      11223344432 2222222211 1247999


Q ss_pred             EEEcCCCc-------ccHHHHHhccc---cCCEEEEecCCCC
Q 027668          110 IIDTVSAV-------HPLMPLIGLLK---SQGKLVLLGAPEK  141 (220)
Q Consensus       110 vid~~g~~-------~~~~~~~~~l~---~~g~iv~~g~~~~  141 (220)
                      +||+.-+.       ..+...++.++   ....++.+..+++
T Consensus       133 iVDal~G~Gl~~~l~~~~~~li~~iN~~~~~~~vvSiDIPSG  174 (243)
T d1jzta_         133 IVDAIFGFSFKPPMREPFKGIVEELCKVQNIIPIVSVDVPTG  174 (243)
T ss_dssp             EEEESCCTTCCSSCCTTHHHHHHHHHHHTTTSCEEEESSCTT
T ss_pred             EEEeeecccccCcccHHHHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            99986331       12455555554   3456788877654

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.93  E-value=1.7  Score=31.47  Aligned_cols=54  Identities=24%  Similarity=0.261  Sum_probs=36.1

Q ss_pred             cCCCCCCEEEEE-cCchHHHHHHHHHHHCCCeEEEEeC--CcccHHHHHHHcCCcEE
Q 027668           38 GLDKPGMHVGVV-GLGGLGHVAVKFAKAMGVKVTVIST--SPSKKSEAVERLGADSF   91 (220)
Q Consensus        38 ~~~~~~~~vlI~-G~g~~G~~~~~~~~~~g~~v~~~~~--~~~~~~~~~~~~g~~~v   91 (220)
                      +.++++...+|. .+|..|++++..++.+|.+.+++..  .+.......+.+|++.+
T Consensus        59 g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi  115 (320)
T d1z7wa1          59 GLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELV  115 (320)
T ss_dssp             TSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             CCCCCCCceEEeeCCchHHHHHHHHHHhhccceEEeehhhhhhhhhhhhhccCcceE
Confidence            434555555555 5699999999999999996554443  33334445578888654

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=89.59  E-value=0.23  Score=36.23  Aligned_cols=72  Identities=17%  Similarity=0.144  Sum_probs=42.3

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCCe------EEEEeCCc--ccHHHHHHHcC----CcEE-ecCCCHHHHHHhcCCccEE
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGVK------VTVISTSP--SKKSEAVERLG----ADSF-LVSRDQDEMQAAMGTMDGI  110 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~~------v~~~~~~~--~~~~~~~~~~g----~~~v-~~~~~~~~~~~~~~~~d~v  110 (220)
                      +|||.|+ |-+|..+++.+...|..      ++..+...  .+.... ....    ...+ .+..+..........+|.|
T Consensus         2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL-APVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGG-GGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHh-hhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            5899997 99999999988887764      44443321  111111 1121    1221 2233344555555689999


Q ss_pred             EEcCCCc
Q 027668          111 IDTVSAV  117 (220)
Q Consensus       111 id~~g~~  117 (220)
                      +-+++..
T Consensus        81 i~~a~~~   87 (322)
T d1r6da_          81 VHFAAES   87 (322)
T ss_dssp             EECCSCC
T ss_pred             Eeecccc
Confidence            9887664

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.59  E-value=2.5  Score=30.09  Aligned_cols=54  Identities=26%  Similarity=0.333  Sum_probs=36.7

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeC--CcccHHHHHHHcCCcEE
Q 027668           38 GLDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVIST--SPSKKSEAVERLGADSF   91 (220)
Q Consensus        38 ~~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~--~~~~~~~~~~~~g~~~v   91 (220)
                      +.++++..|+.-++|..|.+++..++.+|.+++++..  .++......+.+|++.+
T Consensus        56 g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~  111 (302)
T d1fcja_          56 GVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLV  111 (302)
T ss_dssp             TCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEE
T ss_pred             CCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceE
Confidence            4456777766667799999999999999985554443  33333444567787644

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.43  E-value=0.22  Score=36.74  Aligned_cols=31  Identities=29%  Similarity=0.283  Sum_probs=23.7

Q ss_pred             EEEEcCchHHHHHHH-HHH---HCCCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVK-FAK---AMGVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~-~~~---~~g~~v~~~~~~~   76 (220)
                      |||+|+|+.|+.++. +++   ..|++|+++.+..
T Consensus        24 VlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          24 ILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            688999999987654 333   4799999998753

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.42  E-value=0.63  Score=30.32  Aligned_cols=70  Identities=14%  Similarity=0.035  Sum_probs=39.7

Q ss_pred             EEEEEcCchHHHHH--HHHHHHC----CCeEEEEeCCcccHHHHHHH-----cCCcEEecCCCHHHHHHhcCCccEEEEc
Q 027668           45 HVGVVGLGGLGHVA--VKFAKAM----GVKVTVISTSPSKKSEAVER-----LGADSFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        45 ~vlI~G~g~~G~~~--~~~~~~~----g~~v~~~~~~~~~~~~~~~~-----~g~~~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      +|.|+|+|++|...  ..+++..    +.++...+.++++.+.....     .....+.-..+.   .+...+.|+|+.+
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~---~~~l~~aDvVVit   78 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTF---EGAVVDAKYVIFQ   78 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSH---HHHHTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCc---ccccCCCCEEEEe
Confidence            57899998666333  3334332    24899999888765433211     111222222221   1233589999999


Q ss_pred             CCCc
Q 027668          114 VSAV  117 (220)
Q Consensus       114 ~g~~  117 (220)
                      +|.+
T Consensus        79 a~~~   82 (162)
T d1up7a1          79 FRPG   82 (162)
T ss_dssp             CCTT
T ss_pred             cccC
Confidence            9875

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.21  E-value=0.71  Score=33.49  Aligned_cols=91  Identities=15%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             EEEc-CchHHHHHHHHHHHCCCeEEEEeC--CcccHHHHHHHcCCcEEecCCCH---H----------------------
Q 027668           47 GVVG-LGGLGHVAVKFAKAMGVKVTVIST--SPSKKSEAVERLGADSFLVSRDQ---D----------------------   98 (220)
Q Consensus        47 lI~G-~g~~G~~~~~~~~~~g~~v~~~~~--~~~~~~~~~~~~g~~~v~~~~~~---~----------------------   98 (220)
                      ++.+ +|..|.+++..++.+|.+.+++..  .+.......+.+|++.+......   .                      
T Consensus        72 vv~~ssGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~~a~~~g~~~~~~~~~~~  151 (318)
T d1v71a1          72 VLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIPPYDHPH  151 (318)
T ss_dssp             EEECCSSHHHHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTTTTCHHHHHHHHHHHHTCBCCCSSSSHH
T ss_pred             eeeeccchhhHHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEeccCCchHHHHHHHHHHHhcCCEecCCccccc
Confidence            4444 599999999999999985554443  33334445578888755422211   0                      


Q ss_pred             ----------HHHHhcCCccEEEEcCCCcccH---HHHHhccccCCEEEEec
Q 027668           99 ----------EMQAAMGTMDGIIDTVSAVHPL---MPLIGLLKSQGKLVLLG  137 (220)
Q Consensus        99 ----------~~~~~~~~~d~vid~~g~~~~~---~~~~~~l~~~g~iv~~g  137 (220)
                                ++.+-.+.+|.+|-++|+..++   ...++...+..+++.+.
T Consensus       152 ~~~g~~t~~~Ei~~q~~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~  203 (318)
T d1v71a1         152 VLAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVE  203 (318)
T ss_dssp             HHHHHTHHHHHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cccccchHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCCceeeccc
Confidence                      0001013579999888876443   33455566777777654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.18  E-value=0.77  Score=30.12  Aligned_cols=71  Identities=14%  Similarity=0.165  Sum_probs=40.0

Q ss_pred             EEEEEcCchHH--HHHHHHHHHCC----CeEEEEeCCccc--HHHH-------HHHcCCc-EEecCCCHHHHHHhcCCcc
Q 027668           45 HVGVVGLGGLG--HVAVKFAKAMG----VKVTVISTSPSK--KSEA-------VERLGAD-SFLVSRDQDEMQAAMGTMD  108 (220)
Q Consensus        45 ~vlI~G~g~~G--~~~~~~~~~~g----~~v~~~~~~~~~--~~~~-------~~~~g~~-~v~~~~~~~~~~~~~~~~d  108 (220)
                      +|.|+|+|++|  .....+++...    .+++..+.++++  .+..       ...++.. .+....+.   .+...+.|
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~---~~al~gaD   79 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDR---RRALDGAD   79 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCH---HHHHTTCS
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCc---hhhcCCCC
Confidence            57889987554  55666666542    277777876643  2111       1123332 22222222   22335899


Q ss_pred             EEEEcCCCcc
Q 027668          109 GIIDTVSAVH  118 (220)
Q Consensus       109 ~vid~~g~~~  118 (220)
                      +|+.++|...
T Consensus        80 vVv~ta~~~~   89 (169)
T d1s6ya1          80 FVTTQFRVGG   89 (169)
T ss_dssp             EEEECCCTTH
T ss_pred             EEEEccccCC
Confidence            9999998763

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=89.17  E-value=1.7  Score=29.36  Aligned_cols=95  Identities=20%  Similarity=0.162  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHH---HcCCc--EEecCCCHHHHHHhc-CCccEEEEcC
Q 027668           42 PGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVE---RLGAD--SFLVSRDQDEMQAAM-GTMDGIIDTV  114 (220)
Q Consensus        42 ~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~---~~g~~--~v~~~~~~~~~~~~~-~~~d~vid~~  114 (220)
                      ....||=+|+|. |..++.+|+.. ...++.++.+......+.+   +.+..  .++..+-.+....+. +.+|.|+-..
T Consensus        31 ~~plvLdIGcG~-G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f  109 (204)
T d1yzha1          31 DNPIHVEVGSGK-GAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  109 (204)
T ss_dssp             CCCEEEEESCTT-SHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCeEEEEeccC-CHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence            345667789985 89999999987 5589999998876555433   44442  222222212111222 2678776555


Q ss_pred             CCc--------------ccHHHHHhccccCCEEEEec
Q 027668          115 SAV--------------HPLMPLIGLLKSQGKLVLLG  137 (220)
Q Consensus       115 g~~--------------~~~~~~~~~l~~~g~iv~~g  137 (220)
                      ..+              ..++...+.|++||.+.+..
T Consensus       110 PdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         110 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             cccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            443              23566788999999997653

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=88.95  E-value=0.89  Score=32.18  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=24.5

Q ss_pred             EEEEcC-chHHHHHHHHHHHCCC-eEEEEe
Q 027668           46 VGVVGL-GGLGHVAVKFAKAMGV-KVTVIS   73 (220)
Q Consensus        46 vlI~G~-g~~G~~~~~~~~~~g~-~v~~~~   73 (220)
                      |||.|+ |-+|..++..+...|. +|++++
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            789997 9999999999998897 788875

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.79  E-value=0.19  Score=34.31  Aligned_cols=66  Identities=17%  Similarity=0.254  Sum_probs=40.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH---HcCCc-EEecCCCHHHHHHhcCCccEEEE
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE---RLGAD-SFLVSRDQDEMQAAMGTMDGIID  112 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~---~~g~~-~v~~~~~~~~~~~~~~~~d~vid  112 (220)
                      -.|++||=.|+|. |..++.++ ..|+ +|+.++.+++..+.+.+   .++.. .++.. +   ..++.+.||+||-
T Consensus        45 l~g~~vLDlg~Gt-G~l~i~a~-~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~-d---~~~~~~~fD~Vi~  115 (201)
T d1wy7a1          45 IEGKVVADLGAGT-GVLSYGAL-LLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIG-D---VSEFNSRVDIVIM  115 (201)
T ss_dssp             STTCEEEEETCTT-CHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEES-C---GGGCCCCCSEEEE
T ss_pred             CCCCEEEECcCcc-hHHHHHHH-HcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEEC-c---hhhhCCcCcEEEE
Confidence            4688999998763 44444443 4676 89999999887666644   33332 22222 2   1223457898874

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.61  E-value=0.15  Score=39.24  Aligned_cols=32  Identities=34%  Similarity=0.485  Sum_probs=28.7

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      .+|||+|+|++|..++..+-..|. ++.+++.+
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            579999999999999999999999 88888875

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=88.55  E-value=0.2  Score=36.32  Aligned_cols=31  Identities=26%  Similarity=0.307  Sum_probs=25.0

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      |||+|+|.-|+.++.-|...| +|+++++.+.
T Consensus        10 VvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~   40 (305)
T d1chua2          10 VLIIGSGAAGLSLALRLADQH-QVIVLSKGPV   40 (305)
T ss_dssp             EEEECCSHHHHHHHHHHTTTS-CEEEECSSCT
T ss_pred             EEEECccHHHHHHHHHhhcCC-CEEEEECCCC
Confidence            788899999988887776666 9999887653

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.38  E-value=2.5  Score=28.42  Aligned_cols=93  Identities=15%  Similarity=0.123  Sum_probs=55.6

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCCeEEEEeCCccc---------HHHHHHHcCCcEEe--cCCCHHHHHHhcC-CccEEEE
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK---------KSEAVERLGADSFL--VSRDQDEMQAAMG-TMDGIID  112 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~---------~~~~~~~~g~~~v~--~~~~~~~~~~~~~-~~d~vid  112 (220)
                      +|++.|.+..|..+++.+...|.++..+...+++         ....+++.|.....  +..+++.++.+.. .+|++|-
T Consensus         2 kiv~~~~~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~~~Dlii~   81 (203)
T d2blna2           2 KTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFS   81 (203)
T ss_dssp             EEEEEECHHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEEEE
T ss_pred             eEEEEecCHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhhcccceee
Confidence            4778898889999999988889988766543322         33445666765322  1123333433333 8999987


Q ss_pred             cCCCcccHHHHHhccccCCEEEEecC
Q 027668          113 TVSAVHPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       113 ~~g~~~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      +.... .+..-+-...+.|.+-.-..
T Consensus        82 ~g~~~-ii~~~il~~~~~~~iN~H~s  106 (203)
T d2blna2          82 FYYRH-LIYDEILQLAPAGAFNLHGS  106 (203)
T ss_dssp             ESCCS-CCCHHHHTTCTTCEEEEESS
T ss_pred             eeccc-chhcccchhhHHHHHHHhhh
Confidence            65443 44443333445666655443

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=88.14  E-value=0.41  Score=29.80  Aligned_cols=38  Identities=16%  Similarity=0.180  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      +-.|+.|+|+|+|..+.-.+..+..+..+|+++.+.++
T Consensus        24 ~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          24 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             HhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            45789999999998888888888878889999998764

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.94  E-value=0.28  Score=34.00  Aligned_cols=31  Identities=29%  Similarity=0.318  Sum_probs=24.1

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC---CeEEEEeCC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG---VKVTVISTS   75 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g---~~v~~~~~~   75 (220)
                      +|+|+|+||.|+.++..+..+|   .+|.++.+.
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~   36 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCD   36 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC
Confidence            6889999999998887776554   467777764

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=87.54  E-value=0.53  Score=30.38  Aligned_cols=23  Identities=26%  Similarity=0.258  Sum_probs=19.3

Q ss_pred             CEEEEEcC-chHHHHHHHHHHHCC
Q 027668           44 MHVGVVGL-GGLGHVAVKFAKAMG   66 (220)
Q Consensus        44 ~~vlI~G~-g~~G~~~~~~~~~~g   66 (220)
                      -+|.|+|| |.+|+.++..+...+
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcc
Confidence            37899997 999999999887654

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=87.53  E-value=3  Score=28.45  Aligned_cols=92  Identities=16%  Similarity=0.122  Sum_probs=59.1

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHC------CCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCC
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAM------GVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSA  116 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~------g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~  116 (220)
                      .++|.|+|-|+-|.+-++-++-.      |.+|++--+...+....+++-|.... +. ..-.+.+.....|+|.-.+..
T Consensus        44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~-~~-~v~~v~EAv~~ADiVmiLlPD  121 (226)
T d1qmga2          44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEE-NG-TLGDMWETISGSDLVLLLISD  121 (226)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGG-GT-CEEEHHHHHHTCSEEEECSCH
T ss_pred             CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccC-CC-cccCHHHHHhhCCEEEEecch
Confidence            37999999999999999999984      46677776666543344466675410 00 000133344578999988776


Q ss_pred             cc---cHHHHHhccccCCEEEEe
Q 027668          117 VH---PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       117 ~~---~~~~~~~~l~~~g~iv~~  136 (220)
                      ..   .++.....|++|..+...
T Consensus       122 e~Q~~vy~~I~p~Lk~G~~L~Fa  144 (226)
T d1qmga2         122 SAQADNYEKVFSHMKPNSILGLS  144 (226)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEES
T ss_pred             HHHHHHHHHHHHhcCCCceeeec
Confidence            42   233445578888877664

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.06  E-value=0.32  Score=33.42  Aligned_cols=29  Identities=31%  Similarity=0.300  Sum_probs=23.2

Q ss_pred             EEEEcCchHHHHHHHHHHHCCC-eEEEEeC
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGV-KVTVIST   74 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~   74 (220)
                      ++|+|+||-|+.++..+...|. +|.++..
T Consensus         6 viIIG~GpaGl~aA~~aa~~g~k~V~iie~   35 (238)
T d1aoga1           6 LVVIGAGSGGLEAAWNAATLYKKRVAVIDV   35 (238)
T ss_dssp             EEEECCSHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEe
Confidence            5778999999999888888787 5666654

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=87.01  E-value=0.33  Score=35.28  Aligned_cols=31  Identities=32%  Similarity=0.426  Sum_probs=24.9

Q ss_pred             EEEEcCchHHHHHHHHHHHC--CCeEEEEeCCc
Q 027668           46 VGVVGLGGLGHVAVKFAKAM--GVKVTVISTSP   76 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~--g~~v~~~~~~~   76 (220)
                      |||+|+|..|+.++.-++..  |++|+++.+..
T Consensus         8 VlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~   40 (311)
T d1kf6a2           8 LAIVGAGGAGLRAAIAAAQANPNAKIALISKVY   40 (311)
T ss_dssp             EEEECCSHHHHHHHHHHHHHCTTCCEEEEESSC
T ss_pred             EEEECccHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence            68899999999887666654  77999998764

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=86.91  E-value=1.1  Score=27.58  Aligned_cols=90  Identities=18%  Similarity=0.106  Sum_probs=58.1

Q ss_pred             CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      +.++.+|+|.|- |..|+.-.+..+.+|-+++.-+.+...-++    +..-.|||.-. +..++ + ++|.-+-.+..+.
T Consensus         4 i~k~trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkgG~~----~~giPVf~tV~-eAv~~-~-~~d~SvIfVPp~~   76 (121)
T d1oi7a1           4 VNRETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGME----VLGVPVYDTVK-EAVAH-H-EVDASIIFVPAPA   76 (121)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTCE----ETTEEEESSHH-HHHHH-S-CCSEEEECCCHHH
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCCCcE----EECCchHhhHH-HHHHh-c-CCeEEEEeeCHHH
Confidence            456779999995 999999999999999998877776442211    11123444321 22222 2 6777777777665


Q ss_pred             cHHHHHhccccCCEEEEe
Q 027668          119 PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       119 ~~~~~~~~l~~~g~iv~~  136 (220)
                      ..+.+++.+..+=+++.+
T Consensus        77 a~dAi~EAi~agI~liv~   94 (121)
T d1oi7a1          77 AADAALEAAHAGIPLIVL   94 (121)
T ss_dssp             HHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHhCCCcEEEE
Confidence            566677777766555444

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.78  E-value=0.35  Score=31.80  Aligned_cols=87  Identities=18%  Similarity=0.138  Sum_probs=46.8

Q ss_pred             EEEEEcCchHHHHHHHHHHHCC-C-eEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcccHHH
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMG-V-KVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHPLMP  122 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g-~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  122 (220)
                      +|.|+|+|.+|..-++.++... . .+.+++..+.+  .. ......   ...+.+.+-+ ...+|+|+-|+........
T Consensus         9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~---~~~~~~e~l~-~~~iD~V~I~tp~~~H~~~   81 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--EL-GSLDEV---RQISLEDALR-SQEIDVAYICSESSSHEDY   81 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CC-CEETTE---EBCCHHHHHH-CSSEEEEEECSCGGGHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HH-HHhhcc---CcCCHHHHHh-CCCcchhhhcccccccccc
Confidence            6899999999987766655432 2 23233222111  11 011111   1112222111 1389999999988766777


Q ss_pred             HHhccccCCEEEEecCC
Q 027668          123 LIGLLKSQGKLVLLGAP  139 (220)
Q Consensus       123 ~~~~l~~~g~iv~~g~~  139 (220)
                      +..+++.+-. |++.-+
T Consensus        82 ~~~al~~gk~-V~~EKP   97 (172)
T d1lc0a1          82 IRQFLQAGKH-VLVEYP   97 (172)
T ss_dssp             HHHHHHTTCE-EEEESC
T ss_pred             cccccccchh-hhcCCC
Confidence            7777776644 555443

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=86.56  E-value=0.42  Score=35.19  Aligned_cols=30  Identities=27%  Similarity=0.372  Sum_probs=26.2

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      ++|+|+|+-|..++.-+...|.+|.++...
T Consensus         7 viIVGsG~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           7 VVIVGSGPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence            688999999998888777789999999864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.52  E-value=0.64  Score=29.71  Aligned_cols=32  Identities=16%  Similarity=0.323  Sum_probs=27.4

Q ss_pred             EEEEEcC-chHHHHHHHHHHHCCC--eEEEEeCCc
Q 027668           45 HVGVVGL-GGLGHVAVKFAKAMGV--KVTVISTSP   76 (220)
Q Consensus        45 ~vlI~G~-g~~G~~~~~~~~~~g~--~v~~~~~~~   76 (220)
                      +|.|+|+ |.+|..++.++...|.  ++..++..+
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~   36 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH   36 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh
Confidence            5889996 9999999999999885  888888764

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.24  E-value=0.64  Score=28.85  Aligned_cols=38  Identities=26%  Similarity=0.249  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      +-.|+.|+|+|.|..+.-.+..+.....+|+++.+.++
T Consensus        27 ~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~   64 (126)
T d1fl2a2          27 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE   64 (126)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSS
T ss_pred             hcCCceEEEEeCCHHHHHHHHhhhccCCceEEEecccc
Confidence            45689999999998887777777777779999987754

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=86.08  E-value=2.4  Score=25.84  Aligned_cols=90  Identities=18%  Similarity=0.130  Sum_probs=58.6

Q ss_pred             CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCcc
Q 027668           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVH  118 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  118 (220)
                      +.++.+|+|.|- |.-|..-.+..+.+|-+++.-+.+...-+.   -.| -.|+|.-. +.+++ + ++|.-+-.+..+.
T Consensus         3 i~k~trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG~~---~~g-iPVf~sV~-eAv~~-~-~~~~SvIfVPp~~   75 (119)
T d2nu7a1           3 IDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTT---HLG-LPVFNTVR-EAVAA-T-GATASVIYVPAPF   75 (119)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTEE---ETT-EEEESSHH-HHHHH-H-CCCEEEECCCGGG
T ss_pred             ecCCCcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCCcc---cCC-CchhhHHH-HHHHH-h-CCCeEEEeccHHH
Confidence            356789999996 999999999999999998877766432211   112 33554321 12222 1 5677777777776


Q ss_pred             cHHHHHhccccCCEEEEe
Q 027668          119 PLMPLIGLLKSQGKLVLL  136 (220)
Q Consensus       119 ~~~~~~~~l~~~g~iv~~  136 (220)
                      ....+++.+..+=+++.+
T Consensus        76 a~dA~~EAi~agI~~iV~   93 (119)
T d2nu7a1          76 CKDSILEAIDAGIKLIIT   93 (119)
T ss_dssp             HHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHCCCCEEEE
Confidence            666777777776554443

>d1ydhb_ c.129.1.1 (B:) Hypothetical protein At5g11950 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein At5g11950
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.04  E-value=2.9  Score=27.51  Aligned_cols=134  Identities=15%  Similarity=0.098  Sum_probs=70.2

Q ss_pred             CEEEEEcCchHHH--HHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCC-HHHHHHhcCCccEEEEcCCCcccH
Q 027668           44 MHVGVVGLGGLGH--VAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD-QDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~--~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      ..-+|+|+|+.|+  ++.+-++..|.+++.+........+. ..-+.+..+...+ .++...+....|.+|-.-|+..++
T Consensus        34 g~~lv~GGG~~GlMga~a~ga~~~gg~viGv~~~~l~~~e~-~~~~~~~~~~~~~~~~Rk~~m~~~sdafIvlPGG~GTL  112 (181)
T d1ydhb_          34 KIDLVYGGGSVGLMGLISRRVYEGGLHVLGIIPKALMPIEI-SGETVGDVRVVADMHERKAAMAQEAEAFIALPGGYGTM  112 (181)
T ss_dssp             TCEEEECCCSSHHHHHHHHHHHHTTCCEEEEEEGGGHHHHC-CSCCCSEEEEESSHHHHHHHHHHHCSEEEECSCSHHHH
T ss_pred             CCeEEECCCchHHHHHHHHhHhhcCCcccccchhhhhhhhc-CCcccCcceeeccHHHHHHHHHHhCeeEEEeCCccchH
Confidence            3456788766665  45567778888998776543211111 0111233332333 233333444678888777877677


Q ss_pred             HHHHhcc------ccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHH-HHHHHHhCCcceeE--EEEeccc
Q 027668          121 MPLIGLL------KSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQE-MIDFAAKHNIRADI--EVIPADY  191 (220)
Q Consensus       121 ~~~~~~l------~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~i--~~~~~~~  191 (220)
                      ......+      ...-.++++....                       -.+.+.. +-+++++|.+.+..  ...=.++
T Consensus       113 dEl~e~l~l~ql~~~~kpiiiln~~g-----------------------fw~~l~~~l~~~~~~g~i~~~~~~~~~~~d~  169 (181)
T d1ydhb_         113 EELLEMITWSQLGIHKKTVGLLNVDG-----------------------YYNNLLALFDTGVEEGFIKPGARNIVVSAPT  169 (181)
T ss_dssp             HHHHHHHHHHHHTSCCCEEEEECGGG-----------------------TTHHHHHHHHHHHHHTSSCHHHHTTEEEESS
T ss_pred             HHHHHHHHHHHhcccCCCeEEEecCc-----------------------cHHHHHHHHHHHHHCCCCCHHHcCeEEEeCC
Confidence            6655544      1222233321100                       1122323 23455667666653  3445678


Q ss_pred             HHHHHHHHHc
Q 027668          192 VNTAMERLAK  201 (220)
Q Consensus       192 i~~a~~~~~~  201 (220)
                      .+|+++.+++
T Consensus       170 ~ee~~~~l~~  179 (181)
T d1ydhb_         170 AKELMEKMEE  179 (181)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8899888764

>d1zn7a1 c.61.1.1 (A:3-180) Adenine PRTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=1  Score=29.84  Aligned_cols=32  Identities=28%  Similarity=0.343  Sum_probs=27.3

Q ss_pred             CCCCCEEEEE----cCchHHHHHHHHHHHCCCeEEE
Q 027668           40 DKPGMHVGVV----GLGGLGHVAVKFAKAMGVKVTV   71 (220)
Q Consensus        40 ~~~~~~vlI~----G~g~~G~~~~~~~~~~g~~v~~   71 (220)
                      +.+|++|||+    ..|++-.+++++++..|++|+.
T Consensus       115 i~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vvg  150 (178)
T d1zn7a1         115 LEPGQRVVVVDDLLATGGTMNAACELLGRLQAEVLE  150 (178)
T ss_dssp             SCTTCEEEEEEEEESSSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccCCCeEEEehhhhhhchHHHHHHHHHHHCCCEEEE
Confidence            5789999997    3499999999999999997653

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=85.94  E-value=2.7  Score=27.75  Aligned_cols=98  Identities=20%  Similarity=0.233  Sum_probs=55.8

Q ss_pred             CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCC-cEEecCCCH--HHH-HHhc-CCccEEEEc
Q 027668           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGA-DSFLVSRDQ--DEM-QAAM-GTMDGIIDT  113 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~-~~v~~~~~~--~~~-~~~~-~~~d~vid~  113 (220)
                      +++|..+ |.++ |.=|.. ..+++. +.+|++++++++....+.+.... -..+.....  +.. .... +.+|.|+=-
T Consensus        16 ~~~g~~~-vD~T~G~GGhs-~~iL~~-~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~D   92 (182)
T d1wg8a2          16 VRPGGVY-VDATLGGAGHA-RGILER-GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILAD   92 (182)
T ss_dssp             CCTTCEE-EETTCTTSHHH-HHHHHT-TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred             CCCCCEE-EEeCCCCcHHH-HHHhcc-cCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEE
Confidence            5777765 4443 443543 344454 56999999999877666433221 122333222  121 1211 378888643


Q ss_pred             CCCcc---------------cHHHHHhccccCCEEEEecCCC
Q 027668          114 VSAVH---------------PLMPLIGLLKSQGKLVLLGAPE  140 (220)
Q Consensus       114 ~g~~~---------------~~~~~~~~l~~~g~iv~~g~~~  140 (220)
                      .|-+.               .+...++.++++|+++.+....
T Consensus        93 LGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          93 LGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             CSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             ccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            45432               2566777889999988877643

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=85.78  E-value=0.99  Score=32.18  Aligned_cols=72  Identities=18%  Similarity=0.283  Sum_probs=41.9

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHC-CCeEEEEeCCcccHHHHHH---HcCCcEE-ecCCCHHHHHHhcC-CccEEEEcC
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAM-GVKVTVISTSPSKKSEAVE---RLGADSF-LVSRDQDEMQAAMG-TMDGIIDTV  114 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~-g~~v~~~~~~~~~~~~~~~---~~g~~~v-~~~~~~~~~~~~~~-~~d~vid~~  114 (220)
                      +.+-+||=+|+|+ |-.++.+++.. .++|+.++.++...+.+.+   .++...+ +...+  ......+ .||+++..-
T Consensus       107 ~~~~~vlDlGtGS-G~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d--~~~~~~~~~fDlIvsNP  183 (274)
T d2b3ta1         107 EQPCRILDLGTGT-GAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSD--WFSALAGQQFAMIVSNP  183 (274)
T ss_dssp             SSCCEEEEETCTT-SHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCS--TTGGGTTCCEEEEEECC
T ss_pred             ccccceeeeehhh-hHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecc--cccccCCCceeEEEecc
Confidence            4445677777653 44455566665 5599999999887655533   4454312 22222  2223333 799998753


Q ss_pred             C
Q 027668          115 S  115 (220)
Q Consensus       115 g  115 (220)
                      .
T Consensus       184 P  184 (274)
T d2b3ta1         184 P  184 (274)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=85.66  E-value=1.8  Score=30.90  Aligned_cols=47  Identities=17%  Similarity=0.269  Sum_probs=31.4

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCC--cccHHHHHHHcCCcEEe
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS--PSKKSEAVERLGADSFL   92 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~--~~~~~~~~~~~g~~~v~   92 (220)
                      |+...+|..|++++..++.+|.+.+++...  +.......+.+|++.+.
T Consensus        58 vv~~SsGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~GA~V~~  106 (293)
T d1o58a_          58 IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVL  106 (293)
T ss_dssp             EEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEE
T ss_pred             eEEecCcchhhHHHHhhhhccceeEeeccccccHHHeeccccCCcEEEE
Confidence            333456999999999999999855444433  33334455788887543

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=84.93  E-value=0.39  Score=33.19  Aligned_cols=30  Identities=30%  Similarity=0.275  Sum_probs=23.8

Q ss_pred             EEEEcCchHHHHHHHHHHHCCC-eEEEEeCC
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGV-KVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~   75 (220)
                      ++|+|+||-|+.++..+...|. +|.++...
T Consensus         6 vvVIG~GpAG~~aAi~aa~~g~k~V~vie~~   36 (240)
T d1feca1           6 LVVIGAGSGGLEAGWNAASLHKKRVAVIDLQ   36 (240)
T ss_dssp             EEEECCSHHHHHHHHHHHHHHCCCEEEEESC
T ss_pred             EEEECCCHHHHHHHHHHHHcCCCEEEEEEEe
Confidence            5778999999999888877776 57776654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.82  E-value=0.59  Score=31.87  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=29.2

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           41 KPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        41 ~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      -.|++|+|+|+|..|.-++..+...+.+++...++.
T Consensus        30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence            378999999999989877777777788877776664

>d1t35a_ c.129.1.1 (A:) Hypothetical protein YvdD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: MCP/YpsA-like
superfamily: MCP/YpsA-like
family: MoCo carrier protein-like
domain: Hypothetical protein YvdD
species: Bacillus subtilis [TaxId: 1423]

Probab=84.74  E-value=3.7  Score=26.90  Aligned_cols=140  Identities=10%  Similarity=-0.002  Sum_probs=69.7

Q ss_pred             CEEEEEcCchHHHH--HHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCC-HHHHHHhcCCccEEEEcCCCcccH
Q 027668           44 MHVGVVGLGGLGHV--AVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRD-QDEMQAAMGTMDGIIDTVSAVHPL  120 (220)
Q Consensus        44 ~~vlI~G~g~~G~~--~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~-~~~~~~~~~~~d~vid~~g~~~~~  120 (220)
                      ..-+|+|+|..|++  +.+-++..|.+++.+........+. ..-..+..+...+ .++-..+....|.+|-.-|+..++
T Consensus        33 g~~lv~GGG~~GlMga~a~ga~~~gg~v~gv~~~~l~~~~~-~~~~~~~~~~~~~~~~Rk~~m~~~sdafI~lPGG~GTL  111 (179)
T d1t35a_          33 GIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEV-VHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTY  111 (179)
T ss_dssp             TCEEEECCCCSHHHHHHHHHHHTTTCCEEEEEETTCCHHHH-TTCCCSEEEEESHHHHHHHHHHHHCSEEEECSCCHHHH
T ss_pred             CCeEEECCCchHHHHHHhcchhhcCCceeccccchhhcccc-ccccceeeeeeccHHHHHHHHHHhcCeEEEecCccchh
Confidence            34567887665653  4467778888888776554322222 1122343333332 222223334578888777877777


Q ss_pred             HHHHhccccCCEEEEecCCCCCcccCccccccCCcEEEEeeccCHHHHHHHH-HHHHhCCcceeE-E-EEecccHHHHHH
Q 027668          121 MPLIGLLKSQGKLVLLGAPEKPLELPAFPLLTGEKIVGGSLIGGLKETQEMI-DFAAKHNIRADI-E-VIPADYVNTAME  197 (220)
Q Consensus       121 ~~~~~~l~~~g~iv~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~i-~-~~~~~~i~~a~~  197 (220)
                      ......+.-.    .++...            +.+-+.+... ..+.+...+ +++++|-+.+.. + ..-.++.+|+++
T Consensus       112 dEl~e~l~~~----ql~~~~------------kPiil~n~~g-fw~~l~~~l~~~~~~gfi~~~~~~~i~~~~~~~e~i~  174 (179)
T d1t35a_         112 EELFEVLCWA----QIGIHQ------------KPIGLYNVNG-YFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIE  174 (179)
T ss_dssp             HHHHHHHHTT----SCSSCC------------CCEEEECGGG-TTHHHHHHHHHHHHTTSSCTTHHHHEEEESSHHHHHH
T ss_pred             hHHHHHHHHH----HhhccC------------CCeEeecCCc-cHHHHHHHHHHHHHcCCCChHHhCcEEEeCCHHHHHH
Confidence            7766654211    000000            1111111111 112333333 445556665543 3 444678899998


Q ss_pred             HHHc
Q 027668          198 RLAK  201 (220)
Q Consensus       198 ~~~~  201 (220)
                      .+++
T Consensus       175 ~L~~  178 (179)
T d1t35a_         175 QMQN  178 (179)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8764

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=84.47  E-value=1.4  Score=30.57  Aligned_cols=46  Identities=17%  Similarity=0.164  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc
Q 027668           39 LDKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL   86 (220)
Q Consensus        39 ~~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~   86 (220)
                      .++++++||=+|+|. |.++..+++. +.+|+++..++.-.+.+.+.+
T Consensus        18 ~~~~~d~VlEIGpG~-G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~   63 (235)
T d1qama_          18 RLNEHDNIFEIGSGK-GHFTLELVQR-CNFVTAIEIDHKLCKTTENKL   63 (235)
T ss_dssp             CCCTTCEEEEECCTT-SHHHHHHHHH-SSEEEEECSCHHHHHHHHHHT
T ss_pred             CCCCCCeEEEECCCc-hHHHHHHHhC-cCceEEEeeccchHHHHHHHh
Confidence            378999999999884 8888888874 779999998876555554444

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=84.08  E-value=0.65  Score=34.23  Aligned_cols=30  Identities=20%  Similarity=0.195  Sum_probs=25.8

Q ss_pred             EEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           46 VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        46 vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      |+|+|+|.-|..++.-+...|.+|.++.+-
T Consensus         5 VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           5 AVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            688999999988887777789999999974

>d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.99  E-value=2.5  Score=26.18  Aligned_cols=37  Identities=19%  Similarity=0.138  Sum_probs=32.4

Q ss_pred             CCCCCEEEEEcC-chHHHHHHHHHHHCCCeEEEEeCCc
Q 027668           40 DKPGMHVGVVGL-GGLGHVAVKFAKAMGVKVTVISTSP   76 (220)
Q Consensus        40 ~~~~~~vlI~G~-g~~G~~~~~~~~~~g~~v~~~~~~~   76 (220)
                      +.++.+|+|.|- |.-|..-.+..+.+|-+++.-+.+.
T Consensus        12 i~k~TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPg   49 (130)
T d1euca1          12 VDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPG   49 (130)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTT
T ss_pred             EcCCCeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccC
Confidence            678889999996 9999999999999999988777663

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.12  E-value=4.6  Score=29.09  Aligned_cols=97  Identities=21%  Similarity=0.074  Sum_probs=54.4

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHc---CC---cEEecCCC-HHHHHHh---cCCccE
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERL---GA---DSFLVSRD-QDEMQAA---MGTMDG  109 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~---g~---~~v~~~~~-~~~~~~~---~~~~d~  109 (220)
                      ..++.+||=+.+|+ |...+..+ ..|++|+.++.++...+.+.+.+   |.   ..-+...+ .+.++..   .+.||+
T Consensus       130 ~~~~~rVLdlf~~t-G~~sl~aa-~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~  207 (309)
T d2igta1         130 ADRPLKVLNLFGYT-GVASLVAA-AAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI  207 (309)
T ss_dssp             SSSCCEEEEETCTT-CHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred             ccCCCeEEEecCCC-cHHHHHHH-hCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence            45788999886542 33344444 36889999999988776664432   32   12222333 3444332   237999


Q ss_pred             EEEc---C--CCc-----------ccHHHHHhccccCCEEEEecC
Q 027668          110 IIDT---V--SAV-----------HPLMPLIGLLKSQGKLVLLGA  138 (220)
Q Consensus       110 vid~---~--g~~-----------~~~~~~~~~l~~~g~iv~~g~  138 (220)
                      ||--   .  +..           ..+..+...++++|.++++..
T Consensus       208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~  252 (309)
T d2igta1         208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  252 (309)
T ss_dssp             EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence            9741   1  111           012345667888887665543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=82.65  E-value=3.1  Score=25.49  Aligned_cols=61  Identities=23%  Similarity=0.198  Sum_probs=40.5

Q ss_pred             hhHhccCCCCCCEEEEE-cCchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHHHcCCcEEecCC
Q 027668           33 PLRFYGLDKPGMHVGVV-GLGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVERLGADSFLVSR   95 (220)
Q Consensus        33 ~l~~~~~~~~~~~vlI~-G~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~g~~~v~~~~   95 (220)
                      .+...+ +..-+.+++. ..-..-+.+.+.++.+|. ++++...+++..+.+ +++|++.++++.
T Consensus        57 ~l~~~~-i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l-~~~G~d~vi~p~  119 (132)
T d1lssa_          57 TLEDAG-IEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVF-ERLGVDVVVSPE  119 (132)
T ss_dssp             HHHHTT-TTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHH-HHTTCSEEECHH
T ss_pred             hhhhcC-hhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHH-HHCCCCEEECHH
Confidence            344444 5565655554 334556778889999998 677777766554444 789999888643

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=82.37  E-value=3.8  Score=28.14  Aligned_cols=96  Identities=19%  Similarity=0.194  Sum_probs=52.9

Q ss_pred             CCCCEEEEEcC--chHHHHHHHHHHHCC--CeEEEEeCCcccHHHHHHHcCCcEEe--cCCCHHHHHHhcC-CccEE-EE
Q 027668           41 KPGMHVGVVGL--GGLGHVAVKFAKAMG--VKVTVISTSPSKKSEAVERLGADSFL--VSRDQDEMQAAMG-TMDGI-ID  112 (220)
Q Consensus        41 ~~~~~vlI~G~--g~~G~~~~~~~~~~g--~~v~~~~~~~~~~~~~~~~~g~~~v~--~~~~~~~~~~~~~-~~d~v-id  112 (220)
                      +| ++||=+|.  |....+...+++.++  .+++.++....+.........--.++  +..+.+.+..+.+ .+|.| ||
T Consensus        80 KP-k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID  158 (232)
T d2bm8a1          80 RP-RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFID  158 (232)
T ss_dssp             CC-SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred             CC-CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEc
Confidence            44 67888894  777777788888766  48999987654432221222222222  2223344444443 45555 56


Q ss_pred             cCCCcc-cHH--HHHhccccCCEEEEec
Q 027668          113 TVSAVH-PLM--PLIGLLKSQGKLVLLG  137 (220)
Q Consensus       113 ~~g~~~-~~~--~~~~~l~~~g~iv~~g  137 (220)
                      ..-... .+.  .....|++||.++.-.
T Consensus       159 ~~H~~~~v~~~~~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         159 NAHANTFNIMKWAVDHLLEEGDYFIIED  186 (232)
T ss_dssp             SSCSSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             CCcchHHHHHHHHHhcccCcCCEEEEEc
Confidence            442221 111  1346788999887643

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.05  E-value=0.96  Score=30.70  Aligned_cols=30  Identities=20%  Similarity=0.256  Sum_probs=24.9

Q ss_pred             EEEEEcCchHHHHHHHHHHHCCC--eEEEEeC
Q 027668           45 HVGVVGLGGLGHVAVKFAKAMGV--KVTVIST   74 (220)
Q Consensus        45 ~vlI~G~g~~G~~~~~~~~~~g~--~v~~~~~   74 (220)
                      .++|+|+|..|..++.-++..|.  +|+++++
T Consensus         6 ~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~   37 (213)
T d1m6ia1           6 PFLLIGGGTAAFAAARSIRARDPGARVLIVSE   37 (213)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHSTTCEEEEEES
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCcEEEEeC
Confidence            57889999999999988887775  6877765

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.72  E-value=1.2  Score=27.70  Aligned_cols=38  Identities=21%  Similarity=0.232  Sum_probs=30.5

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCcc
Q 027668           40 DKPGMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPS   77 (220)
Q Consensus        40 ~~~~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~   77 (220)
                      +=.|+.|+|+|.|..+.-.+..+.....+|+++.+.++
T Consensus        31 ~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~   68 (130)
T d1vdca2          31 IFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDA   68 (130)
T ss_dssp             GGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             HhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccc
Confidence            44689999999988787777777777779999988754

>d1qb7a_ c.61.1.1 (A:) Adenine PRTase {Leishmania donovani [TaxId: 5661]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Leishmania donovani [TaxId: 5661]

Probab=81.48  E-value=1.7  Score=30.09  Aligned_cols=31  Identities=19%  Similarity=0.260  Sum_probs=26.3

Q ss_pred             CCCCCEEEEE----cCchHHHHHHHHHHHCCCeEE
Q 027668           40 DKPGMHVGVV----GLGGLGHVAVKFAKAMGVKVT   70 (220)
Q Consensus        40 ~~~~~~vlI~----G~g~~G~~~~~~~~~~g~~v~   70 (220)
                      +.+|++|||+    ..|++-.+++++++..|++|+
T Consensus       135 l~~g~rVlIVDDviaTGgT~~aa~~ll~~~Ga~Vv  169 (236)
T d1qb7a_         135 IGKGSRVVLIDDVLATGGTALSGLQLVEASDAVVV  169 (236)
T ss_dssp             SCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCceEEEehhhhhccHHHHHHHHHHHHCCCEEE
Confidence            5689999886    348999999999999999765

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.47  E-value=1.2  Score=35.05  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             CEEEEEcCchHHHHHHHHHHHCCC-eEEEEeCCc
Q 027668           44 MHVGVVGLGGLGHVAVKFAKAMGV-KVTVISTSP   76 (220)
Q Consensus        44 ~~vlI~G~g~~G~~~~~~~~~~g~-~v~~~~~~~   76 (220)
                      .+|+|+|+|++|.-++.-+-..|. ++++++.+.
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~   59 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQ   59 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSB
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCc
Confidence            689999999999999998888998 777777653

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=80.88  E-value=0.96  Score=33.32  Aligned_cols=36  Identities=22%  Similarity=0.221  Sum_probs=27.5

Q ss_pred             CCCCCE--EEEEcCchHHHHHHHHHHHCCCeEEEEeCC
Q 027668           40 DKPGMH--VGVVGLGGLGHVAVKFAKAMGVKVTVISTS   75 (220)
Q Consensus        40 ~~~~~~--vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~   75 (220)
                      +..|++  |+|+|+|.-|..++.-+...|.+|.++.+-
T Consensus         2 ~~~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           2 LADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             CCTTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            345666  478899999988886555579999999974

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=80.82  E-value=1.1  Score=29.61  Aligned_cols=90  Identities=13%  Similarity=0.033  Sum_probs=48.0

Q ss_pred             CCCEEEEEcC--chHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH---HcCC--cEEecCCCHHHHHHhcCCccEEEEc
Q 027668           42 PGMHVGVVGL--GGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE---RLGA--DSFLVSRDQDEMQAAMGTMDGIIDT  113 (220)
Q Consensus        42 ~~~~vlI~G~--g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~---~~g~--~~v~~~~~~~~~~~~~~~~d~vid~  113 (220)
                      .+.+||=++|  |.+|+   . |..+|+ +|+.++.+.+..+.+.+   .++.  ..++..+..+.+......||+||--
T Consensus        43 ~~~~vLDlfaGsG~~gi---e-alsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~D  118 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGL---E-ALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVD  118 (183)
T ss_dssp             TTCEEEETTCTTCHHHH---H-HHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred             chhhhhhhhccccceee---e-EEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEc
Confidence            5567776643  66664   2 445888 89999999876555433   3443  2333332223332222379999843


Q ss_pred             CCC-cccHHHHHh------ccccCCEEEE
Q 027668          114 VSA-VHPLMPLIG------LLKSQGKLVL  135 (220)
Q Consensus       114 ~g~-~~~~~~~~~------~l~~~g~iv~  135 (220)
                      -.. .......+.      .++++|.++.
T Consensus       119 PPY~~~~~~~~l~~l~~~~~L~~~~iIii  147 (183)
T d2fpoa1         119 PPFRRGLLEETINLLEDNGWLADEALIYV  147 (183)
T ss_dssp             CSSSTTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             CccccchHHHHHHHHHHCCCCCCCeEEEE
Confidence            221 112333333      3566666654

>d1g2qa_ c.61.1.1 (A:) Adenine PRTase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PRTase-like
superfamily: PRTase-like
family: Phosphoribosyltransferases (PRTases)
domain: Adenine PRTase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.66  E-value=2.3  Score=28.05  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=26.6

Q ss_pred             CCCCCEEEEE----cCchHHHHHHHHHHHCCCeEE
Q 027668           40 DKPGMHVGVV----GLGGLGHVAVKFAKAMGVKVT   70 (220)
Q Consensus        40 ~~~~~~vlI~----G~g~~G~~~~~~~~~~g~~v~   70 (220)
                      +.+|++|||+    -.|++-.+++++++..|++|+
T Consensus       119 l~~g~rVlIVDDviaTGgT~~a~~~ll~~~Ga~vv  153 (178)
T d1g2qa_         119 IPAGSNVIIVDDIIATGGSAAAAGELVEQLEANLL  153 (178)
T ss_dssp             SCTTCEEEEEEEEESSCHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCCEEEEEehHhhhChHHHHHHHHHHHcCCEEE
Confidence            5789999987    349999999999999999765

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=80.65  E-value=1.1  Score=29.92  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=27.9

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHCCCeEEEEeCCccc
Q 027668           43 GMHVGVVGLGGLGHVAVKFAKAMGVKVTVISTSPSK   78 (220)
Q Consensus        43 ~~~vlI~G~g~~G~~~~~~~~~~g~~v~~~~~~~~~   78 (220)
                      .++++|+|+|..|..+..+++..+.+++....+...
T Consensus         2 ~kkl~i~Gagg~~~~v~di~~~~~~~~~~f~dd~~~   37 (193)
T d3bswa1           2 TEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKG   37 (193)
T ss_dssp             CSEEEEEC--CHHHHHHHHHHHHTCCEEEECCCCTT
T ss_pred             CCEEEEEcCCHhHHHHHHHHHhCCCcEEEEEcCCCC
Confidence            478999999999999999999999987776655443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=80.51  E-value=2.7  Score=27.65  Aligned_cols=92  Identities=15%  Similarity=0.037  Sum_probs=52.2

Q ss_pred             CCCCCEEEEEc--CchHHHHHHHHHHHCCC-eEEEEeCCcccHHHHHH---HcCC---cEEecCCCHHHHHHhc---CCc
Q 027668           40 DKPGMHVGVVG--LGGLGHVAVKFAKAMGV-KVTVISTSPSKKSEAVE---RLGA---DSFLVSRDQDEMQAAM---GTM  107 (220)
Q Consensus        40 ~~~~~~vlI~G--~g~~G~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~---~~g~---~~v~~~~~~~~~~~~~---~~~  107 (220)
                      ..+|.+||=+.  .|.+|+.    +...|+ +|+.++.+.+..+.+.+   .++.   ..++..+-.+.+++..   ..|
T Consensus        39 ~~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~f  114 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQF  114 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hcCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCc
Confidence            45788888764  4777764    334888 79999999876655533   3343   2234333334444432   379


Q ss_pred             cEEEEcCCCc-----ccHHHHHh--ccccCCEEEE
Q 027668          108 DGIIDTVSAV-----HPLMPLIG--LLKSQGKLVL  135 (220)
Q Consensus       108 d~vid~~g~~-----~~~~~~~~--~l~~~g~iv~  135 (220)
                      |+||---...     ..+....+  .++++|.+++
T Consensus       115 DlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~  149 (182)
T d2fhpa1         115 DLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVC  149 (182)
T ss_dssp             EEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEE
Confidence            9998433211     12233322  4677786653

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.33  E-value=2.8  Score=30.16  Aligned_cols=51  Identities=25%  Similarity=0.311  Sum_probs=34.1

Q ss_pred             CCEEEEEc-CchHHHHHHHHHHHCCCeEEEEeCCcc--cHHHHHHHcCCcEEec
Q 027668           43 GMHVGVVG-LGGLGHVAVKFAKAMGVKVTVISTSPS--KKSEAVERLGADSFLV   93 (220)
Q Consensus        43 ~~~vlI~G-~g~~G~~~~~~~~~~g~~v~~~~~~~~--~~~~~~~~~g~~~v~~   93 (220)
                      |..-+|.. +|..|.+++..++.+|.+++++.....  ...+..+.+|++.+..
T Consensus        53 g~~~vv~aSsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~v~~~  106 (319)
T d1p5ja_          53 GCAHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVV  106 (319)
T ss_dssp             TCCEEEECCSSHHHHHHHHHHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHhhhccccceeccccccccccccccccceeccccc
Confidence            33345566 599999999999999997666655433  2334446778765543

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.05  E-value=2  Score=26.01  Aligned_cols=79  Identities=15%  Similarity=0.131  Sum_probs=49.1

Q ss_pred             CEEEEEcC----chHHHHHHHHHHHCCCeEEEEeCCcccHHHHHHHcCCcEEecCCCHHHHHHhcCCccEEEEcCCCccc
Q 027668           44 MHVGVVGL----GGLGHVAVKFAKAMGVKVTVISTSPSKKSEAVERLGADSFLVSRDQDEMQAAMGTMDGIIDTVSAVHP  119 (220)
Q Consensus        44 ~~vlI~G~----g~~G~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~  119 (220)
                      ++|.|+|+    +..|..+.+.++..|++|+-+....++      -+|.. ++     ..+.++...+|+++-++.....
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~------i~G~~-~y-----~sl~~lp~~~D~vvi~vp~~~~   69 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE------IEGLK-CY-----RSVRELPKDVDVIVFVVPPKVG   69 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE------ETTEE-CB-----SSGGGSCTTCCEEEECSCHHHH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc------ccCcc-cc-----ccchhccccceEEEEEeCHHHH
Confidence            57889984    467999999999999998887654322      12321 22     1233444578999888877643


Q ss_pred             HHHHHhccccCCEEE
Q 027668          120 LMPLIGLLKSQGKLV  134 (220)
Q Consensus       120 ~~~~~~~l~~~g~iv  134 (220)
                      ....-++++.+-+.+
T Consensus        70 ~~~l~~~~~~g~k~v   84 (116)
T d1y81a1          70 LQVAKEAVEAGFKKL   84 (116)
T ss_dssp             HHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHhcCCceE
Confidence            333444444443433