Citrus Sinensis ID: 027811

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MRAVEVSKRLSRALFSFSSYSRSLPNFLPSPDCHRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKHIEGLY
ccHHHHHHHHHHccEEEccccccccccccccccccccccccccccccccccccccEEEEEccccccccEEEEcccEEEEEEcccccccccccEEEEEEEccccccEEEEEEcccccEEcEEEEEEEEEEEEccccEEEEEcccccccEEccHHHHcccccccccccEEEEEEEccEEEEEEcccEEEEEEEEccccccccccccccccEEEEEccccc
cccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHcccEEEcccccccEEEEEcccEEEEEEEEEcccccccHEHHEHHEccccccEEEEEcccccEEcccEEEcccEEEEEcccccEEEEcccccHHccccHHHHHHHHHHHHHccEEEEEEEccEEEEEEcccEEEEEEEEccccccccccccccccEEEEcccccc
MRAVEVSKRLSRALFSfssysrslpnflpspdchrssgdrdtcllrfpwsatqQRAVKVNashvrpgnvieksgKMYQVIDAEhkqrgrggamMQMELrdidtgnkvslrfgteEAVERVFVEdksftclytendtafviesetfeqlevpldvfGKAGAYLQEGMKVWLQLYDgralsgsipkRVACTIKEihastkgptvtprygptiskhiegly
mravevskRLSRALFsfssysrslpnflpSPDCHRSSGDRDTCLLRFPWSatqqravkvnashvrpgnvieksgkmyqVIDAEhkqrgrggaMMQMELRDIDTGNKVSLRfgteeavervfvedKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEihastkgptvtprygptiskhiegly
MRAVEVSKRLSRALFSFSSYSRSLPNFLPSPDCHRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKHIEGLY
****************************************DTCLLRFPWSATQQRAVKVNASHVRPGNVIE***KMYQVI********************IDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHAS**********************
************ALFS*********************************SATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKHIEGL*
MRAVEVSKRLSRALFSFSSYSRSLPNFLPSPDCHRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKHIEGLY
***********RALFSF*******PNFLPSPDCHRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKG******YGP****H*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MRAVEVSKRLSRALFSFSSYSRSLPNFLPSPDCHRSSGDRDTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKHIEGLY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query218 2.2.26 [Sep-21-2011]
B0UJ99188 Elongation factor P OS=Me yes no 0.706 0.819 0.435 2e-30
Q2G6X5187 Elongation factor P OS=No yes no 0.706 0.823 0.389 2e-30
B8IS61188 Elongation factor P OS=Me yes no 0.697 0.808 0.434 4e-30
A9IYN9191 Elongation factor P OS=Ba yes no 0.720 0.821 0.407 1e-29
Q6FYN9190 Elongation factor P OS=Ba yes no 0.706 0.810 0.409 3e-29
B1ZHM8188 Elongation factor P OS=Me yes no 0.706 0.819 0.435 3e-29
A5VAL5187 Elongation factor P OS=Sp yes no 0.706 0.823 0.376 5e-29
Q6G1Z7191 Elongation factor P OS=Ba yes no 0.720 0.821 0.388 9e-29
A4YTY9188 Elongation factor P OS=Br yes no 0.706 0.819 0.402 9e-29
B1M2B1188 Elongation factor P OS=Me yes no 0.697 0.808 0.427 1e-28
>sp|B0UJ99|EFP_METS4 Elongation factor P OS=Methylobacterium sp. (strain 4-46) GN=efp PE=3 SV=1 Back     alignment and function desciption
 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 96/154 (62%)

Query: 57  VKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEA 116
           +KV AS +R GNV+EK G++Y ++ AE+   G+G  + Q+++R I  G KVS R+ T E 
Sbjct: 1   MKVIASSLRKGNVVEKDGRLYVILSAENIHPGKGTPVTQLDMRRITDGVKVSERYRTTEQ 60

Query: 117 VERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR 176
           VER FVED+  T LY + + +  +  E++EQ+ VP DV G   AYLQEGM V L L++G 
Sbjct: 61  VERAFVEDREHTFLYKDGEGSHFMNPESYEQVAVPDDVIGDQAAYLQEGMAVMLSLHNGV 120

Query: 177 ALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTI 210
            L+  +P+RV   I E    TKG T +  Y P +
Sbjct: 121 PLAIELPQRVTLEIVETEPVTKGQTASSSYKPAV 154
Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
Methylobacterium sp. (strain 4-46) (taxid: 426117)
>sp|Q2G6X5|EFP_NOVAD Elongation factor P OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|B8IS61|EFP_METNO Elongation factor P OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|A9IYN9|EFP_BART1 Elongation factor P OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|Q6FYN9|EFP_BARQU Elongation factor P OS=Bartonella quintana (strain Toulouse) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|B1ZHM8|EFP_METPB Elongation factor P OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|A5VAL5|EFP_SPHWW Elongation factor P OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|Q6G1Z7|EFP_BARHE Elongation factor P OS=Bartonella henselae (strain ATCC 49882 / Houston 1) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|A4YTY9|EFP_BRASO Elongation factor P OS=Bradyrhizobium sp. (strain ORS278) GN=efp PE=3 SV=1 Back     alignment and function description
>sp|B1M2B1|EFP_METRJ Elongation factor P OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=efp PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
297799372257 elongation factor P (EF-P) family protei 0.912 0.774 0.553 5e-62
18416726258 elongation factor P (EF-P) family protei 0.766 0.647 0.652 2e-60
334186934261 elongation factor P (EF-P) family protei 0.766 0.639 0.652 2e-60
224052898190 predicted protein [Populus trichocarpa] 0.729 0.836 0.644 9e-58
255588908216 Elongation factor P, putative [Ricinus c 0.729 0.736 0.654 2e-55
242032603246 hypothetical protein SORBIDRAFT_01g00443 0.729 0.646 0.584 3e-50
226509854246 elongation factor P [Zea mays] gi|195624 0.729 0.646 0.584 1e-49
195643194246 elongation factor P [Zea mays] 0.729 0.646 0.584 1e-49
357114989248 PREDICTED: elongation factor P-like [Bra 0.729 0.641 0.584 2e-49
30103012247 putative translation elongation factor P 0.853 0.753 0.5 3e-48
>gi|297799372|ref|XP_002867570.1| elongation factor P (EF-P) family protein [Arabidopsis lyrata subsp. lyrata] gi|297313406|gb|EFH43829.1| elongation factor P (EF-P) family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 125/226 (55%), Positives = 160/226 (70%), Gaps = 27/226 (11%)

Query: 1   MRAVEVSKRLS--RALFSFSSYS------------------RSLPNFLPSPDCHRSSGDR 40
           MR +   KR+S  R+LF+FS+ +                   S PN   +  C+R     
Sbjct: 1   MRGLHHLKRISIVRSLFTFSNTTSPGALTTRRSLYSLSRLLSSTPN--AAGGCYR----- 53

Query: 41  DTCLLRFPWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRD 100
           +T  L+ PWSA Q+R VKVNA  +R GNVIE++G+ ++V++AEHKQ+GRGGA +Q+ELRD
Sbjct: 54  ETPSLQSPWSAVQRRGVKVNAIQLRAGNVIERTGRTFRVVEAEHKQQGRGGASIQVELRD 113

Query: 101 IDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGA 160
           +DTGNK++LRFG+EE+VE+VFVE+KSFTCLYTE DTAF+IE  TFEQ+EVPLD+FGKA  
Sbjct: 114 VDTGNKLNLRFGSEESVEKVFVEEKSFTCLYTEGDTAFLIEPNTFEQVEVPLDIFGKAAV 173

Query: 161 YLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRY 206
           YL+E MKV LQLYDGRALS SIPK + CT+ E     KG T  PRY
Sbjct: 174 YLKEEMKVQLQLYDGRALSASIPKHITCTVVETQDPMKGLTSAPRY 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18416726|ref|NP_567743.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] gi|15450784|gb|AAK96663.1| putative protein [Arabidopsis thaliana] gi|20259884|gb|AAM13289.1| putative protein [Arabidopsis thaliana] gi|332659783|gb|AEE85183.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|334186934|ref|NP_001190845.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] gi|332659784|gb|AEE85184.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224052898|ref|XP_002297630.1| predicted protein [Populus trichocarpa] gi|222844888|gb|EEE82435.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255588908|ref|XP_002534760.1| Elongation factor P, putative [Ricinus communis] gi|223524618|gb|EEF27623.1| Elongation factor P, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|242032603|ref|XP_002463696.1| hypothetical protein SORBIDRAFT_01g004430 [Sorghum bicolor] gi|241917550|gb|EER90694.1| hypothetical protein SORBIDRAFT_01g004430 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|226509854|ref|NP_001149082.1| elongation factor P [Zea mays] gi|195624552|gb|ACG34106.1| elongation factor P [Zea mays] Back     alignment and taxonomy information
>gi|195643194|gb|ACG41065.1| elongation factor P [Zea mays] Back     alignment and taxonomy information
>gi|357114989|ref|XP_003559276.1| PREDICTED: elongation factor P-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|30103012|gb|AAP21425.1| putative translation elongation factor P [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
TIGR_CMR|SPO_1244187 SPO_1244 "translation elongati 0.701 0.818 0.352 1.7e-27
TIGR_CMR|APH_0547188 APH_0547 "translation elongati 0.655 0.760 0.321 1.1e-21
TIGR_CMR|NSE_0196191 NSE_0196 "translation elongati 0.701 0.801 0.333 8e-21
TIGR_CMR|ECH_0777189 ECH_0777 "translation elongati 0.651 0.751 0.316 2.7e-20
TIGR_CMR|CHY_1872185 CHY_1872 "translation elongati 0.665 0.783 0.255 5.4e-15
TIGR_CMR|BA_4421185 BA_4421 "translation elongatio 0.665 0.783 0.262 6.2e-14
TIGR_CMR|CJE_0655189 CJE_0655 "translation elongati 0.633 0.730 0.246 1e-11
TIGR_CMR|SO_2328186 SO_2328 "translation elongatio 0.642 0.752 0.272 2.8e-11
UNIPROTKB|P0A6N4188 efp "protein chain elongation 0.628 0.728 0.284 3.2e-10
TIGR_CMR|DET_0714186 DET_0714 "translation elongati 0.637 0.747 0.25 5.2e-10
TIGR_CMR|SPO_1244 SPO_1244 "translation elongation factor P" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 54/153 (35%), Positives = 96/153 (62%)

Query:    58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAV 117
             K+N + +RPGNV+E +G ++  +  +H + G+GGA  Q+ELR++  G+K++ RF + + V
Sbjct:     3 KINGNEIRPGNVLEHNGGLWAAVKVDHVKPGKGGAFAQVELRNLRNGSKLNERFRSADKV 62

Query:   118 ERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRA 177
             ERV +E K    LY  +     +++ET+EQ+E+P D+ G+   +LQ+GM + ++ Y+  A
Sbjct:    63 ERVRLEQKDQQFLYESDGMLVFMDAETYEQIELPADLLGERRPFLQDGMTILVEFYESEA 122

Query:   178 LSGSIPKRVACTIKEIHASTKGPTVTPRYGPTI 210
             L+ ++P++V C I E     KG T    + P +
Sbjct:   123 LNATLPQKVTCKIVETEPVVKGQTAANSFKPAV 155
GO:0003746 "translation elongation factor activity" evidence=ISS
GO:0006414 "translational elongation" evidence=ISS
TIGR_CMR|APH_0547 APH_0547 "translation elongation factor P" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0196 NSE_0196 "translation elongation factor P" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0777 ECH_0777 "translation elongation factor P" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1872 CHY_1872 "translation elongation factor P" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4421 BA_4421 "translation elongation factor P" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0655 CJE_0655 "translation elongation factor P" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2328 SO_2328 "translation elongation factor P" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6N4 efp "protein chain elongation factor EF-P" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0714 DET_0714 "translation elongation factor P" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
PRK00529186 PRK00529, PRK00529, elongation factor P; Validated 8e-45
TIGR00038184 TIGR00038, efp, translation elongation factor P 1e-41
COG0231131 COG0231, Efp, Translation elongation factor P (EF- 4e-33
pfam0820758 pfam08207, EFP_N, Elongation factor P (EF-P) KOW-l 3e-15
cd0447061 cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Trans 3e-13
TIGR02178186 TIGR02178, yeiP, elongation factor P-like protein 7e-12
pfam0113255 pfam01132, EFP, Elongation factor P (EF-P) OB doma 8e-12
PRK04542189 PRK04542, PRK04542, elongation factor P; Provision 2e-10
PRK14578187 PRK14578, PRK14578, elongation factor P; Provision 8e-09
PRK12426185 PRK12426, PRK12426, elongation factor P; Provision 1e-06
>gnl|CDD|234788 PRK00529, PRK00529, elongation factor P; Validated Back     alignment and domain information 
 Score =  147 bits (374), Expect = 8e-45
 Identities = 51/146 (34%), Positives = 84/146 (57%)

Query: 58  KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAV 117
            ++A+ +R G VIE  G+ Y V++ EH + G+G A ++ +L+++ TG+ V   F   + V
Sbjct: 1   MISANDLRKGLVIEIDGEPYVVLEFEHVKPGKGQAFVRTKLKNLLTGSVVEKTFKAGDKV 60

Query: 118 ERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRA 177
           ER  VE +    LY + D    +++ET+EQ+EVP D  G A  +L+EGM+V +  Y+G  
Sbjct: 61  ERADVERREMQYLYNDGDGYVFMDTETYEQIEVPADQVGDAAKFLKEGMEVTVVFYNGEP 120

Query: 178 LSGSIPKRVACTIKEIHASTKGPTVT 203
           +S  +P  V   + E     KG T +
Sbjct: 121 ISVELPNFVELEVTETEPGVKGDTAS 146

Length = 186
>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P Back     alignment and domain information
>gnl|CDD|223309 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|203876 pfam08207, EFP_N, Elongation factor P (EF-P) KOW-like domain Back     alignment and domain information
>gnl|CDD|239916 cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 Back     alignment and domain information
>gnl|CDD|131233 TIGR02178, yeiP, elongation factor P-like protein YeiP Back     alignment and domain information
>gnl|CDD|216318 pfam01132, EFP, Elongation factor P (EF-P) OB domain Back     alignment and domain information
>gnl|CDD|179863 PRK04542, PRK04542, elongation factor P; Provisional Back     alignment and domain information
>gnl|CDD|173042 PRK14578, PRK14578, elongation factor P; Provisional Back     alignment and domain information
>gnl|CDD|183522 PRK12426, PRK12426, elongation factor P; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 218
PRK12426185 elongation factor P; Provisional 100.0
PRK14578187 elongation factor P; Provisional 100.0
PRK04542189 elongation factor P; Provisional 100.0
TIGR02178186 yeiP elongation factor P-like protein YeiP. This m 100.0
PRK00529186 elongation factor P; Validated 100.0
TIGR00038184 efp translation elongation factor P. function: inv 100.0
COG0231131 Efp Translation elongation factor P (EF-P)/transla 100.0
TIGR00037130 eIF_5A translation initiation factor eIF-5A. Obser 100.0
PRK03999129 translation initiation factor IF-5A; Provisional 100.0
PLN03107159 eukaryotic translation initiation factor 5A; Provi 99.98
cd0447061 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elo 99.9
PF0820758 EFP_N: Elongation factor P (EF-P) KOW-like domain; 99.85
PF0113255 EFP: Elongation factor P (EF-P) OB domain; InterPr 99.84
PTZ00328166 eukaryotic initiation factor 5a; Provisional 99.78
cd0446355 S1_EF_like S1_EF_like: EF-like, S1-like RNA-bindin 99.72
KOG3271156 consensus Translation initiation factor 5A (eIF-5A 99.51
smart0084156 Elong-fact-P_C Elongation factor P, C-terminal. Th 98.78
cd0579456 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elo 98.75
PF0928556 Elong-fact-P_C: Elongation factor P, C-terminal; I 98.67
cd0446757 S1_aIF5A S1_aIF5A: Archaeal translation Initiation 98.61
COG1499355 NMD3 NMD protein affecting ribosome stability and 98.37
PF0128769 eIF-5a: Eukaryotic elongation factor 5A hypusine, 96.88
cd0446869 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiati 90.37
PF08605131 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; I 83.63
>PRK12426 elongation factor P; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.9e-60  Score=398.65  Aligned_cols=156  Identities=17%  Similarity=0.335  Sum_probs=154.5

Q ss_pred             eEecCCCCCccEEEECCeEEEEEEeEEeeCCCCCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEEEEEEeCCeE
Q 027811           58 KVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFTCLYTENDTA  137 (218)
Q Consensus        58 ~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGkG~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~qyLY~Dgd~~  137 (218)
                      |+++||||+|++|++||+||+|++++|+|||||+|++|+|||||.||+++++||+++|++|.|+++++++||||.||+.|
T Consensus         1 m~~~~dik~G~~i~~~g~~~~V~~~~h~kPGkg~A~vr~klknl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~~~   80 (185)
T PRK12426          1 MVLSSQLSVGMFISTKDGLYKVVSVSKVTGPKGETFIKVSLQAADSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGDEY   80 (185)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEecCCCCceEEEEEEEEcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCCeE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCccccccCchhhhhhhhhcCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCcccEEEEe
Q 027811          138 FVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGPTISKH  213 (218)
Q Consensus       138 vFMD~ETyEQi~v~~d~lg~~~~fL~eg~~V~V~~~eg~~i~V~LP~~V~l~V~etep~vKGdTat~~~K~A~Let  213 (218)
                      +|||+|||||++|+++.+|++.+||+|||+|+|.+|+|+||+|+||.+|+|+|+||+|++|||||++++|||+|||
T Consensus        81 ~FMd~etyeQi~i~~~~lgd~~~fL~e~~~v~v~~~~~~~i~v~lP~~V~l~V~etep~~kgdTat~~~KpAtLeT  156 (185)
T PRK12426         81 LFLDLGNYDKIYIPKEIMKDNFLFLKAGVTVSALVYDGTVFSVELPHFLELMVSKTDFPGDSLSLSGGAKKALLET  156 (185)
T ss_pred             EEecCCCceEEEeCHHHhhhHHhhccCCCEEEEEEECCEEEEEECCCEEEEEEEECCCCCCCcccCCCcccEEEcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998

>PRK14578 elongation factor P; Provisional Back     alignment and domain information
>PRK04542 elongation factor P; Provisional Back     alignment and domain information
>TIGR02178 yeiP elongation factor P-like protein YeiP Back     alignment and domain information
>PRK00529 elongation factor P; Validated Back     alignment and domain information
>TIGR00038 efp translation elongation factor P Back     alignment and domain information
>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00037 eIF_5A translation initiation factor eIF-5A Back     alignment and domain information
>PRK03999 translation initiation factor IF-5A; Provisional Back     alignment and domain information
>PLN03107 eukaryotic translation initiation factor 5A; Provisional Back     alignment and domain information
>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 Back     alignment and domain information
>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors Back     alignment and domain information
>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet [] Back     alignment and domain information
>PTZ00328 eukaryotic initiation factor 5a; Provisional Back     alignment and domain information
>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain Back     alignment and domain information
>KOG3271 consensus Translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal Back     alignment and domain information
>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1 Back     alignment and domain information
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology [] Back     alignment and domain information
>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain Back     alignment and domain information
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands [] Back     alignment and domain information
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain Back     alignment and domain information
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
1ueb_A184 Crystal Structure Of Translation Elongation Factor 1e-14
1yby_A215 Conserved Hypothetical Protein Cth-95 From Clostrid 4e-13
3a5z_B191 Crystal Structure Of Escherichia Coli Genx In Compl 2e-09
3tre_A191 Structure Of A Translation Elongation Factor P (Efp 4e-05
>pdb|1UEB|A Chain A, Crystal Structure Of Translation Elongation Factor P From Thermus Thermophilus Hb8 Length = 184 Back     alignment and structure 
Iteration: 1

 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 79/146 (54%), Gaps = 3/146 (2%)
Query: 59  VNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVE 118
           ++ + +RPG  ++  G +++ ++ +H++ GRGGA +  + ++++TG  V   F + E +E
Sbjct: 2   ISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLE 61
Query: 119 RVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLD-VFGKAGAYLQEGMKVWLQLYDGRA 177
            ++VE +    LY E +    ++ ET+EQ  VP   V G    + +EGM     +Y+G+ 
Sbjct: 62  DIYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVG--AEFFKEGMTALGDMYEGQP 119
Query: 178 LSGSIPKRVACTIKEIHASTKGPTVT 203
           +  + P  V   + +     +G TV+
Sbjct: 120 IKVTPPTVVELKVVDTPPGVRGDTVS 145
>pdb|1YBY|A Chain A, Conserved Hypothetical Protein Cth-95 From Clostridium Thermocellum Length = 215 Back     alignment and structure
>pdb|3A5Z|B Chain B, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 191 Back     alignment and structure
>pdb|3TRE|A Chain A, Structure Of A Translation Elongation Factor P (Efp) From Coxiella Burnetii Length = 191 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
1yby_A215 Translation elongation factor P; conserved hypothe 1e-36
3a5z_B191 EF-P, elongation factor P; aminoacyl-tRNA syntheta 1e-35
1ueb_A184 EF-P, TT0860, elongation factor P; beta barrel, ri 1e-35
3tre_A191 EF-P, elongation factor P; protein synthesis, tran 3e-35
3oyy_A191 EF-P, elongation factor P; translation; 1.75A {Pse 6e-32
1iz6_A138 Initiation factor 5A; SH3-like barrel, OB fold, bi 1e-22
1bkb_A136 Translation initiation factor 5A; 1.75A {Pyrobacul 4e-21
2eif_A136 IF-5A, protein (eukaryotic translation initiation 5e-20
3cpf_A138 Eukaryotic translation initiation factor 5A-1; str 2e-10
3hks_A167 EIF-5A-2, eukaryotic translation initiation factor 2e-09
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} Length = 215 Back     alignment and structure
 Score =  126 bits (319), Expect = 1e-36
 Identities = 40/156 (25%), Positives = 76/156 (48%)

Query: 48  PWSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKV 107
             S  ++  + ++A   + G   E  G+++QVI+ +H + G+G A ++ +L++I TG  +
Sbjct: 21  STSLYKKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATI 80

Query: 108 SLRFGTEEAVERVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMK 167
              F   + + +  +E K    LY + D  + +++ETFEQL +  D  G A  +++E   
Sbjct: 81  EKTFNPTDKMPKAHIERKDMQYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEI 140

Query: 168 VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVT 203
           V +  + G       P  V   + +     KG T T
Sbjct: 141 VKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTAT 176
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} Length = 191 Back     alignment and structure
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Length = 184 Back     alignment and structure
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii} Length = 191 Back     alignment and structure
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa} Length = 191 Back     alignment and structure
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Length = 138 Back     alignment and structure
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136 Back     alignment and structure
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Length = 136 Back     alignment and structure
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Length = 138 Back     alignment and structure
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Length = 167 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
1yby_A215 Translation elongation factor P; conserved hypothe 100.0
1ueb_A184 EF-P, TT0860, elongation factor P; beta barrel, ri 100.0
3tre_A191 EF-P, elongation factor P; protein synthesis, tran 100.0
3oyy_A191 EF-P, elongation factor P; translation; 1.75A {Pse 100.0
3a5z_B191 EF-P, elongation factor P; aminoacyl-tRNA syntheta 100.0
1bkb_A136 Translation initiation factor 5A; 1.75A {Pyrobacul 100.0
1iz6_A138 Initiation factor 5A; SH3-like barrel, OB fold, bi 100.0
3cpf_A138 Eukaryotic translation initiation factor 5A-1; str 100.0
2eif_A136 IF-5A, protein (eukaryotic translation initiation 100.0
1x6o_A174 Eukaryotic initiation factor 5A; SGPP, structural 100.0
3er0_A167 Eukaryotic translation initiation factor 5A-2; yea 100.0
3hks_A167 EIF-5A-2, eukaryotic translation initiation factor 100.0
1khi_A176 HEX1; membrane sealing, peroxisomal target, struct 99.49
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} Back     alignment and structure
Probab=100.00  E-value=2.3e-62  Score=421.59  Aligned_cols=165  Identities=25%  Similarity=0.434  Sum_probs=146.3

Q ss_pred             cceeeeeeeeEecCCCCCccEEEECCeEEEEEEeEEeeCCCCCeeEEEEEeeCCCCCEEEEEecCCCcEEeeeEEeeEEE
Q 027811           49 WSATQQRAVKVNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVERVFVEDKSFT  128 (218)
Q Consensus        49 ~~~~~~R~~~i~andiRkG~~I~~dG~~y~Vl~~~h~kpGkG~A~vr~klknL~TG~k~e~tf~s~dkvE~v~le~k~~q  128 (218)
                      .+++|.|++|+++|+||+|++|++||+||+|++++|+|||||+|++|+|+|||.||+++|.+|+++|+||.|++++++||
T Consensus        22 ~~~~~~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~Q  101 (215)
T 1yby_A           22 TSLYKKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQ  101 (215)
T ss_dssp             ---------CEEGGGCCTTCEEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEE
T ss_pred             hhhhhhCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEE
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCeEEEecCCCccccccCchhhhhhhhhcCCCCEEEEEEECCEEEEEeCCCeEEEEEEEeCCCCCCccCCCCccc
Q 027811          129 CLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYGP  208 (218)
Q Consensus       129 yLY~Dgd~~vFMD~ETyEQi~v~~d~lg~~~~fL~eg~~V~V~~~eg~~i~V~LP~~V~l~V~etep~vKGdTat~~~K~  208 (218)
                      |||.||+.|+|||+|||||++||++.+|++.+||+|||+|+|++|+|+||+|+||++|+|+|+||||++|||||++++||
T Consensus       102 ylY~Dgd~y~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V~eteP~vkGdTa~~~~Kp  181 (215)
T 1yby_A          102 YLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEVTDTEPGFKGDTATGATKP  181 (215)
T ss_dssp             EEEEETTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEEEEC-------CCSCCEEE
T ss_pred             EEEeCCCEEEEccCCCCeeEEecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEEEEcCCCccccccCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEe
Q 027811          209 TISKH  213 (218)
Q Consensus       209 A~Let  213 (218)
                      |+|||
T Consensus       182 A~leT  186 (215)
T 1yby_A          182 AIVET  186 (215)
T ss_dssp             EEETT
T ss_pred             EEEeC
Confidence            99997
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Back     alignment and structure
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii} Back     alignment and structure
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa} Back     alignment and structure
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} Back     alignment and structure
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Back     alignment and structure
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Back     alignment and structure
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Back     alignment and structure
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Back     alignment and structure
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 218
d1ueba163 b.34.5.2 (A:1-63) Elongation factor P N-terminal d 1e-18
d1ueba263 b.40.4.5 (A:64-126) Elongation factor P middle and 1e-12
d1iz6a169 b.34.5.2 (A:2-70) Eukaryotic initiation translatio 3e-12
d2eifa173 b.34.5.2 (A:1-73) Eukaryotic initiation translatio 6e-10
d1bkba171 b.34.5.2 (A:4-74) Eukaryotic initiation translatio 7e-10
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 74.2 bits (183), Expect = 1e-18
 Identities = 16/62 (25%), Positives = 39/62 (62%)

Query: 59  VNASHVRPGNVIEKSGKMYQVIDAEHKQRGRGGAMMQMELRDIDTGNKVSLRFGTEEAVE 118
           ++ + +RPG  ++  G +++ ++ +H++ GRGGA +  + ++++TG  V   F + E +E
Sbjct: 2   ISVTDLRPGTKVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGATVERTFNSGEKLE 61

Query: 119 RV 120
            +
Sbjct: 62  DI 63
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63 Back     information, alignment and structure
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69 Back     information, alignment and structure
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 73 Back     information, alignment and structure
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 71 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
d1ueba263 Elongation factor P middle and C-terminal domains 99.9
d1ueba163 Elongation factor P N-terminal domain {Thermus the 99.89
d1iz6a169 Eukaryotic initiation translation factor 5a (eIF5a 99.85
d1bkba171 Eukaryotic initiation translation factor 5a (eIF5a 99.85
d2eifa173 Eukaryotic initiation translation factor 5a (eIF5a 99.83
d1x6oa168 Eukaryotic initiation translation factor 5a (eIF5a 99.44
d1ueba358 Elongation factor P middle and C-terminal domains 98.75
d1khia176 Woronin body major protein (Hex1) {Filamentous fun 98.68
d2eifa259 C-terminal domain of eukaryotic initiation transla 98.47
d1bkba265 C-terminal domain of eukaryotic initiation transla 98.46
d1iz6a267 C-terminal domain of eukaryotic initiation transla 98.42
>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.90  E-value=3e-24  Score=150.41  Aligned_cols=62  Identities=29%  Similarity=0.562  Sum_probs=60.2

Q ss_pred             EEeeEEEEEEEeCCeEEEecCCCccccccCchhhhhhhhhcCCCCEEEEEEECCEEEEEeCCC
Q 027811          122 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPK  184 (218)
Q Consensus       122 le~k~~qyLY~Dgd~~vFMD~ETyEQi~v~~d~lg~~~~fL~eg~~V~V~~~eg~~i~V~LP~  184 (218)
                      ||+|++||||.||+.|+|||+|||||+.|+++.+|++ +||+|||+|.|.+|+|+||+|+||+
T Consensus         2 ve~~~~qyLY~dgd~~~FMd~etyEQi~v~~~~i~~~-~~L~eg~~~~v~~~~~~~i~i~lPT   63 (63)
T d1ueba2           2 VETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPT   63 (63)
T ss_dssp             EEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCS
T ss_pred             ccceeEEEEEeCCCeEEEEeCCCccEEEcCHHHcChh-ccccCCCEEEEEEECCEEEEEECCC
Confidence            7999999999999999999999999999999999986 7999999999999999999999995
>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Back     information, alignment and structure
>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Back     information, alignment and structure
>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Back     information, alignment and structure
>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure