Citrus Sinensis ID: 027849

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MSSDNYNNNNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV
Secondary Structure (PSIPRED)
cccccccccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHcccccEEEHHHcccccHHHHHHHHHccccccccccEEEEEEEccEEEEEEccccEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEEcccEEEEEEEccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHEHEEccccccEEEEEEEEccEEEEEcccccEEEcccccEEEEEEEEEEEHHHHccccccccccccccEEEEEEEEccccEEEEEEEcHHHHHHHHHHHHHHHccccccEccc
Coil and Loop (DISEMBL)
mssdnynnnnpylrltplpasgnsggswGEICEMLNRCGKRFEDATRKAECLADnvwhhlrisprlSDAAMAKIAQGTkvfteggyEKVFQQEFHKLAGEKLLKAYACYistsngpviGTLYISTQrmafcsdyplshysssgqqeWVYFKVVVDldqlrtvnpsanrwnpsekYIHVVTRDGYEFWFMGFISYDKALKTLTEALRrfpdtsgglvpv
Flexible Loop (DISEMBL)
MSSDNYNNNNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRtvnpsanrwnpsekyIHVVTRDGYEFWFMGFISYDKALKTLTEALrrfpdtsgglvpv
Low Complexity Region (SEG)
MSSDNYNNNNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV
Disordered region (IsUnstruct)
*************************GSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALR************
Disordered Region (DISOPRED)
**************************************************CLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLD******************IHVVTRDGYEFWFMGFISYDKALKTLT****************
Disordered Region (DISEMBL)
********NNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFP*********
Disordered Region (DISPRO)
********NNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFP*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSDNYNNNNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q8S8F8	299	GLABRA2 expression modula	yes	no	0.899	0.655	0.520	2e-56
Q9M122	233	GEM-like protein 2 OS=Ara	no	no	0.899	0.841	0.520	3e-56
Q9SE96	259	GEM-like protein 1 OS=Ara	no	no	0.880	0.741	0.525	3e-55
Q9LYV6	272	GEM-like protein 5 OS=Ara	no	no	0.798	0.639	0.448	9e-42
Q9M063	239	Putative GEM-like protein	no	no	0.788	0.719	0.445	6e-41
Q9FTA0	222	GEM-like protein 4 OS=Ara	no	no	0.729	0.716	0.415	1e-33
Q9FMW4	219	Putative GEM-like protein	no	no	0.729	0.726	0.396	1e-32
Q9FMW6	218	GEM-like protein 6 OS=Ara	no	no	0.729	0.729	0.383	2e-31
Q9FMW5	210	GEM-like protein 7 OS=Ara	no	no	0.729	0.757	0.383	6e-31

>sp|Q8S8F8|GEM_ARATH GLABRA2 expression modulator OS=Arabidopsis thaliana GN=GEM PE=1 SV=1

 Score =  218 bits (555), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 103/198 (52%), Positives = 139/198 (70%), Gaps = 2/198 (1%)

Query: 10  NPYLRLTPLPASGNSGGSWGEICE-MLNRCGKRFEDATRKAECLADNVWHHLRISPRLSD 68
           NPY+  +P   S  S     E  + +L R GKR  +A +K E LA N W HLR +P  +D
Sbjct: 96  NPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHLRTAPSFAD 155

Query: 69  AAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRM 128
           AAM +IAQ TKVF EGGYEK+F+Q F     E+LL ++ACY+STS GPV+G LYIS+ ++
Sbjct: 156 AAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGVLYISSAKL 215

Query: 129 AFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWF 188
           A+CSD PLS Y +  Q EW Y+KVV+ L QL+ VNPSA+  NP+EKYI V++ D +EFWF
Sbjct: 216 AYCSDNPLS-YKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVISVDNHEFWF 274

Query: 189 MGFISYDKALKTLTEALR 206
           MGF++YD A+ +L ++L+
Sbjct: 275 MGFLNYDGAVTSLQDSLQ 292

Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. Could be part of a complex that negatively modulates GLABRA2 and CAPRICE expression via the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M122|GEML2_ARATH GEM-like protein 2 OS=Arabidopsis thaliana GN=At4g01600 PE=2 SV=1

 Score =  218 bits (554), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 103/198 (52%), Positives = 144/198 (72%), Gaps = 2/198 (1%)

Query: 9   NNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSD 68
           +NPY+ +T  P S +   S  ++ E+LNRCGK+ EDATRKAE L   +  HL+ SP +SD
Sbjct: 28  DNPYVHITS-PTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISD 86

Query: 69  AAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRM 128
           AAMA+++QGTK+  EGG E+VFQ+EF  LA EKLL ++ CYIST++GPV G +YIS +R+
Sbjct: 87  AAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRI 146

Query: 129 AFCSDYPLSHYSSSGQQE-WVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFW 187
           AFCSDY +   SS+G      Y+KVV++ +++ +++ S N   PSE+Y+H+VTRDG+EFW
Sbjct: 147 AFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFW 206

Query: 188 FMGFISYDKALKTLTEAL 205
           FMGF+SY  A   L +AL
Sbjct: 207 FMGFVSYIDAFNCLNKAL 224

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SE96|GEML1_ARATH GEM-like protein 1 OS=Arabidopsis thaliana GN=FIP1 PE=1 SV=1

 Score =  214 bits (546), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/198 (52%), Positives = 142/198 (71%), Gaps = 6/198 (3%)

Query: 9   NNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSD 68
           +NPY+  +P PA  N+  S   + + L + GK   DAT+KAE LA N W HL+  P ++D
Sbjct: 64  SNPYV--SPSPAPRNTMDS---VKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVAD 118

Query: 69  AAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRM 128
           AA+++IAQGTK+  EGGYEKVF+Q F  L  EKLLK YACY+STS GPV+G +Y+ST ++
Sbjct: 119 AAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKL 178

Query: 129 AFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWF 188
           AF SD PLS Y    Q  W Y+KVV+  +QL+ VNPS +R N S+KYI V++ D +EFWF
Sbjct: 179 AFSSDNPLS-YKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWF 237

Query: 189 MGFISYDKALKTLTEALR 206
           MGF++Y+ A+K+L EA++
Sbjct: 238 MGFVTYESAVKSLQEAVQ 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV6|GEML5_ARATH GEM-like protein 5 OS=Arabidopsis thaliana GN=At5g13200 PE=1 SV=1

 Score =  170 bits (430), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 78/174 (44%), Positives = 111/174 (63%)

Query: 42  FEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEK 101
           F   +RKAE +A N+WH+L+  P +S+ A  K+    K  T+GG+E +F+Q F     E 
Sbjct: 97  FHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNET 156

Query: 102 LLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRT 161
           L K +ACY+ST+ GPV GT+Y+S  R+AFCSD PL   + SGQ+ W Y++VVV L  + T
Sbjct: 157 LKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVAT 216

Query: 162 VNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGL 215
           VNP   +  P EKYI + T DG++FWFMGF++Y+KA   L  ++  F    G +
Sbjct: 217 VNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQTAHGSV 270

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M063|GEML3_ARATH Putative GEM-like protein 3 OS=Arabidopsis thaliana GN=At4g40100 PE=3 SV=2

 Score =  167 bits (423), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 90/202 (44%), Positives = 123/202 (60%), Gaps = 30/202 (14%)

Query: 10  NPYLRLTPLPASGNSGGSWGEICE----MLNRCGKRFEDATRKAECLADNVWHH-LRISP 64
           NPY+   P   +  S  S  E  E    +L R G+R  +A  KAE LA N W H LR   
Sbjct: 55  NPYVARAP---TETSDASLKETMESVKGVLGRWGRRVGEAAMKAESLAGNTWQHPLR--- 108

Query: 65  RLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYIS 124
               AAM +IAQ TKV  EGGYEK+F+Q F  +  E+L  ++ACY+STS GPV+G LY+S
Sbjct: 109 ----AAMGRIAQSTKVLAEGGYEKIFRQTFETVPEEQLQNSFACYLSTSAGPVMGVLYVS 164

Query: 125 TQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGY 184
           T ++A+CSD  L               VV+ L QL++VNPS +  NP+EKYI V++ D +
Sbjct: 165 TAKLAYCSDTSL---------------VVIPLHQLKSVNPSISTVNPAEKYIQVISVDDH 209

Query: 185 EFWFMGFISYDKALKTLTEALR 206
           EFWFMGF++Y+ A+ +L + L+
Sbjct: 210 EFWFMGFLNYEGAVTSLQDTLQ 231

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FTA0|GEML4_ARATH GEM-like protein 4 OS=Arabidopsis thaliana GN=At5g08350 PE=2 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/159 (41%), Positives = 100/159 (62%)

Query: 47  RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 106
           +K +   + V    +I P+L++    K++ G ++   GG EK+F++ F    GEKL K Y
Sbjct: 54  KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMY 113

Query: 107 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 166
            CY+ST+ GP+ G L+IS+++MAFCS+  +   S  G    V++KV + L ++  VN S 
Sbjct: 114 QCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQ 173

Query: 167 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 205
           N   PS+KY+ VVT DG++FWFMGF+SY KA   L +AL
Sbjct: 174 NTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKAL 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW4|GEML8_ARATH Putative GEM-like protein 8 OS=Arabidopsis thaliana GN=At5g23370 PE=3 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 101/159 (63%)

Query: 47  RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 106
           +K +   + V    ++ P+L++    K++ G ++   GG EK++++ F     EKL KAY
Sbjct: 55  KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAY 114

Query: 107 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 166
            CY+ST+ GP+ G L+IS++++AFCS+  +   S  G+   V++KV + L ++  VN S 
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQ 174

Query: 167 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 205
           N   PS+KY+ VVT DG++FWFMGF+SY KA   L +AL
Sbjct: 175 NTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQAL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW6|GEML6_ARATH GEM-like protein 6 OS=Arabidopsis thaliana GN=At5g23350 PE=2 SV=2

 Score =  135 bits (341), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 98/159 (61%)

Query: 47  RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 106
           +K +   +      ++ P+L++    K++ G K+   GG EK++++ F     EKL KAY
Sbjct: 55  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDQEKLFKAY 114

Query: 107 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 166
            CY+ST+ GP+ G L+IS++++AFCS+  +   S  G    V++KV + L ++  VN S 
Sbjct: 115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGVLSRVHYKVSIPLCKINGVNQSQ 174

Query: 167 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 205
           N   PS+KY+ +VT D ++FWFMGF+SY KA   L +AL
Sbjct: 175 NTKKPSQKYLEIVTIDNFDFWFMGFVSYQKAFNCLEKAL 213

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMW5|GEML7_ARATH GEM-like protein 7 OS=Arabidopsis thaliana GN=At5g23360 PE=2 SV=1

 Score =  134 bits (336), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 61/159 (38%), Positives = 97/159 (61%)

Query: 47  RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 106
           +K +   +      ++ P+L++    K++ G K+   GG EK++++ F     EKL KAY
Sbjct: 47  KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106

Query: 107 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 166
            CY+ST+ G + G L+IS++++AFCS+  +   S  G    V++KV + L ++  VN S 
Sbjct: 107 QCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQ 166

Query: 167 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 205
           N   PS++Y+ VVT D Y+FWFMGF+SY KA   L +AL
Sbjct: 167 NTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
224128097	223	predicted protein [Populus trichocarpa]	0.972	0.950	0.645	1e-80
118489249	223	unknown [Populus trichocarpa x Populus d	0.972	0.950	0.645	1e-80
255548163	225	conserved hypothetical protein [Ricinus	0.967	0.937	0.649	2e-78
300078584	261	hypothetical protein [Jatropha curcas]	0.967	0.808	0.629	4e-77
224064396	177	predicted protein [Populus trichocarpa]	0.807	0.994	0.715	5e-72
116789488	292	unknown [Picea sitchensis]	0.903	0.674	0.58	8e-65
351722466	215	uncharacterized protein LOC100306065 [Gl	0.908	0.920	0.572	1e-62
326493394	291	predicted protein [Hordeum vulgare subsp	0.903	0.676	0.569	2e-62
357452167	241	GEM-like protein [Medicago truncatula] g	0.986	0.892	0.518	3e-60
357116515	240	PREDICTED: GEM-like protein 1-like [Brac	0.931	0.845	0.523	4e-58

>gi|224128097|ref|XP_002320243.1| predicted protein [Populus trichocarpa] gi|222861016|gb|EEE98558.1| predicted protein [Populus trichocarpa]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/220 (64%), Positives = 177/220 (80%), Gaps = 8/220 (3%)

Query: 5   NYNNNNPYLRLTPLPASGNSGG------SWGEICEMLNRCGKRFEDATRKAECLADNVWH 58
           ++NNNNPYL+  P+P + ++G       S G+IC+ LNRCGKR E ATRKAE  ADN+WH
Sbjct: 2   DHNNNNPYLQFAPVPPATSNGHGTNGNRSMGKICDALNRCGKRVEVATRKAEVYADNIWH 61

Query: 59  HLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVI 118
           H ++SP L+DAAMA+I+QGTKV TEGG++KVFQQ F  L GEK L AYACYISTS GPVI
Sbjct: 62  HFKVSPSLTDAAMARISQGTKVLTEGGHDKVFQQTFEVLPGEKFLNAYACYISTSTGPVI 121

Query: 119 GTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHV 178
           GTLYIS++++AFCS++P  +YS +GQQ+W+Y+KVVV  D+LR VNPS+NR NPS+KYI V
Sbjct: 122 GTLYISSKKVAFCSEHPFCYYSPTGQQQWMYYKVVVQPDRLRAVNPSSNRMNPSDKYIQV 181

Query: 179 VTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV 218
           VT DG+EFWFMGFISYDKALK L E L++  D+SG  VPV
Sbjct: 182 VTTDGHEFWFMGFISYDKALKQLCETLQQSRDSSG--VPV 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489249|gb|ABK96430.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  304 bits (779), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 142/220 (64%), Positives = 178/220 (80%), Gaps = 8/220 (3%)

Query: 5   NYNNNNPYLRLTPLPASGNSGG------SWGEICEMLNRCGKRFEDATRKAECLADNVWH 58
           ++NNNNPYL+  P+P + ++G       S G+IC+ LNRCGKR E ATRKAE   DN+WH
Sbjct: 2   DHNNNNPYLQFAPVPPATSNGHGTNGNRSMGKICDALNRCGKRVEVATRKAEVYVDNIWH 61

Query: 59  HLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVI 118
           H ++SP L+DAAMA+I+QGTKV TEGG++KVFQQ F  L GEK L AYACYISTS GPVI
Sbjct: 62  HFKVSPSLTDAAMARISQGTKVLTEGGHDKVFQQTFEVLPGEKFLNAYACYISTSTGPVI 121

Query: 119 GTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHV 178
           GTLYIS++++AFCS++P  +YS +GQQ+W+Y+KVVV  D+LRTVNPS+NR +PS+KYI V
Sbjct: 122 GTLYISSKKVAFCSEHPFCYYSPTGQQQWMYYKVVVQPDRLRTVNPSSNRMSPSDKYIQV 181

Query: 179 VTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLVPV 218
           VT DG+EFWFMGFISYDKALK L EAL++  D+SG  VPV
Sbjct: 182 VTTDGHEFWFMGFISYDKALKQLCEALQQSRDSSG--VPV 219

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548163|ref|XP_002515138.1| conserved hypothetical protein [Ricinus communis] gi|223545618|gb|EEF47122.1| conserved hypothetical protein [Ricinus communis]

 Score =  297 bits (760), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 139/214 (64%), Positives = 174/214 (81%), Gaps = 3/214 (1%)

Query: 5   NYNNNNPYLRLTPLPASG---NSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLR 61
           NY+N NPYL++ P+ ++G   +S      IC+ L+RCGKR +D TRKAE  ADNVWHHL+
Sbjct: 7   NYSNGNPYLQIAPVHSNGYGPSSRRPMSRICDALSRCGKRVDDVTRKAEVFADNVWHHLK 66

Query: 62  ISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTL 121
           +S   +DAAMA+I+QGTKV TEGG++KVFQQ F  L GEKLLKAY CY+STS+GPVIGTL
Sbjct: 67  VSSSFTDAAMARISQGTKVLTEGGHDKVFQQAFGVLPGEKLLKAYVCYLSTSSGPVIGTL 126

Query: 122 YISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTR 181
           YIST+RMAF SDYP  +YSS+GQQ+ +Y+KVVV LD+LRT NPS++R NPSEKYI +VT 
Sbjct: 127 YISTKRMAFSSDYPFWYYSSTGQQQRMYYKVVVQLDKLRTANPSSSRINPSEKYIQIVTT 186

Query: 182 DGYEFWFMGFISYDKALKTLTEALRRFPDTSGGL 215
           DG++FWFMGF+SYDKALK LTEAL+   D+SG +
Sbjct: 187 DGHDFWFMGFVSYDKALKQLTEALQCSRDSSGDI 220

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|300078584|gb|ADJ67196.1| hypothetical protein [Jatropha curcas]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/216 (62%), Positives = 172/216 (79%), Gaps = 5/216 (2%)

Query: 5   NYNNNNPYLRLTPLPASGNSGGS-----WGEICEMLNRCGKRFEDATRKAECLADNVWHH 59
           N+N  NPYL++ P+ A+G             IC++LNRCGKR +D TRK E  ADNVWHH
Sbjct: 10  NHNGGNPYLQIAPVYANGYGPYGNGGRPISRICDVLNRCGKRVDDVTRKVEIYADNVWHH 69

Query: 60  LRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIG 119
           L++S  L+DAAMA+IAQGTKV TEGG++KVFQQ F  L GEKLL AY CY+STS+GPVIG
Sbjct: 70  LKVSASLTDAAMARIAQGTKVLTEGGHDKVFQQTFGYLHGEKLLNAYVCYLSTSSGPVIG 129

Query: 120 TLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVV 179
           TLY+S++R+ FCSDYP  +Y+S+GQQ+W+Y+KVVV LD+LRTVNPS++R + SE+YI +V
Sbjct: 130 TLYVSSKRVTFCSDYPFCYYASNGQQQWMYYKVVVQLDKLRTVNPSSSRTDSSERYIQIV 189

Query: 180 TRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGL 215
           T DG+EFWFMGFISYDKAL  LTEAL+R   +SGG+
Sbjct: 190 TTDGHEFWFMGFISYDKALNQLTEALQRSRGSSGGI 225

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064396|ref|XP_002301455.1| predicted protein [Populus trichocarpa] gi|222843181|gb|EEE80728.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 126/176 (71%), Positives = 150/176 (85%)

Query: 29  GEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEK 88
           G+I + LNRCGKR E ATRKAE  ADN+WHH ++SP L+DAAMA+IAQGTKV  EGG++K
Sbjct: 2   GKIRDALNRCGKRVELATRKAEVYADNIWHHFKVSPSLADAAMARIAQGTKVLAEGGHDK 61

Query: 89  VFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWV 148
           VFQQ F  L GEKLL AYACYISTS GPVIGTLY+S++++AFCS+YP  +YSS+GQQ+W+
Sbjct: 62  VFQQTFEVLPGEKLLNAYACYISTSTGPVIGTLYVSSKKVAFCSEYPFCYYSSTGQQQWM 121

Query: 149 YFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEA 204
           Y+KVVV LD+LR VNPS+NR N SEKYI +VT+DG EFWFMGFISYDKALK L EA
Sbjct: 122 YYKVVVQLDRLRAVNPSSNRANHSEKYIQIVTKDGQEFWFMGFISYDKALKQLCEA 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116789488|gb|ABK25265.1| unknown [Picea sitchensis]

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 116/200 (58%), Positives = 148/200 (74%), Gaps = 3/200 (1%)

Query: 9   NNPYLRLTPLPASGNSGG-SWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLS 67
           +NPY+  TP  A+G++G      I ++ N+C K+ E+ TRK E  A NVW HL+I P  +
Sbjct: 87  SNPYVATTP--ATGSTGKRPMDMIADVFNKCSKKLEENTRKVEGFAGNVWQHLKIGPSFT 144

Query: 68  DAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQR 127
           D AM +IAQGTK+ TEGGYE VF++ F  + GEKL KA+ACY+STS GPVIGTLY+ST +
Sbjct: 145 DTAMGRIAQGTKLLTEGGYENVFRRTFETIPGEKLQKAHACYLSTSAGPVIGTLYLSTVK 204

Query: 128 MAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFW 187
           +AFCSD PL++Y   GQ EW Y+KV V L QL+ VNPSANR NP+EKYI ++T D +EFW
Sbjct: 205 LAFCSDSPLAYYPHPGQTEWSYYKVTVLLSQLKAVNPSANRMNPAEKYIQIITTDDHEFW 264

Query: 188 FMGFISYDKALKTLTEALRR 207
           FMGF++YDKALK L EA R 
Sbjct: 265 FMGFVTYDKALKNLQEASRH 284

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722466|ref|NP_001236989.1| uncharacterized protein LOC100306065 [Glycine max] gi|255627427|gb|ACU14058.1| unknown [Glycine max]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 115/201 (57%), Positives = 154/201 (76%), Gaps = 3/201 (1%)

Query: 5   NYNNNNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISP 64
           N  +NNPY+++ PL    N       +C+ LNRC ++   ATR+AE +ADN W+H+RI  
Sbjct: 3   NNGSNNPYVQIFPL--HTNRPKPMDTVCDALNRCSRKVGKATRRAETMADNFWNHIRIGS 60

Query: 65  RLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYIS 124
            L+DAA+A+I QGTKV T GG + +FQQ F    GEKL+K++ACY+STS GPVIGT+Y+S
Sbjct: 61  SLADAAVARIVQGTKVLTLGGPDILFQQSFGNFPGEKLIKSFACYLSTSTGPVIGTIYVS 120

Query: 125 TQRMAFCSDYPLSHYSSSGQQ-EWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDG 183
           T+R+AFCSDYPL +Y  S QQ + V++KVV+ LDQL TV+P +NR+NP+EKY+ +VT DG
Sbjct: 121 TKRVAFCSDYPLCNYPLSLQQNQSVHYKVVLQLDQLSTVSPFSNRFNPAEKYMQLVTVDG 180

Query: 184 YEFWFMGFISYDKALKTLTEA 204
           YEF+FMGFI+YDKALKT+ EA
Sbjct: 181 YEFYFMGFIAYDKALKTVREA 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326493394|dbj|BAJ85158.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 115/202 (56%), Positives = 154/202 (76%), Gaps = 5/202 (2%)

Query: 10  NPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSDA 69
           NPY+++TP  AS ++  S   I   L R GK  ED TRKA     N+W+HLR +P ++DA
Sbjct: 93  NPYVQVTPASASPSTRQS---IMRALGRYGKLLEDGTRKAADTTGNIWNHLRTAPNMADA 149

Query: 70  AMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMA 129
           A+A++AQGTKV+ EGG+E+VF Q F  + GE+L KAYACY+STS+GPVIGTLY+ST R+A
Sbjct: 150 AVARLAQGTKVYAEGGHERVFHQVFGGVPGEQLRKAYACYLSTSSGPVIGTLYLSTARLA 209

Query: 130 FCSDYPLSHYSSSGQQ--EWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFW 187
           FCSD P+S+++ S  Q  E +Y+KVV+ L+Q+R V+PSA+ W PSE+YI V T D +EFW
Sbjct: 210 FCSDSPVSYHAPSPTQPPEPMYYKVVLPLNQVRAVSPSASMWRPSERYIQVATTDSHEFW 269

Query: 188 FMGFISYDKALKTLTEALRRFP 209
           FMGF+SYDKALK L++AL+R P
Sbjct: 270 FMGFVSYDKALKHLSDALQRRP 291

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452167|ref|XP_003596360.1| GEM-like protein [Medicago truncatula] gi|355485408|gb|AES66611.1| GEM-like protein [Medicago truncatula] gi|388521459|gb|AFK48791.1| unknown [Medicago truncatula]

 Score =  236 bits (603), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/220 (51%), Positives = 156/220 (70%), Gaps = 5/220 (2%)

Query: 2   SSDNYNN-NNPYLRLTPL---PASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVW 57
           S+  +NN NNPY++L+P     A+ N      ++   +N C ++  +ATR AE + D++W
Sbjct: 17  STGMHNNINNPYVQLSPANPSSAAANRPNPMDKVSGAINNCSRKVGEATRHAENMVDSIW 76

Query: 58  HHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTS-NGP 116
           +H+R+S   +DAAMA++ QGTKV   GG EK+FQQ F   +GEKLLK Y CYIST+ +GP
Sbjct: 77  NHVRMSSSPADAAMARLVQGTKVIANGGSEKLFQQTFGVFSGEKLLKQYVCYISTTASGP 136

Query: 117 VIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI 176
           VIGTLYI+T+R+AFCSDYP+ H+  S Q + +Y+KVV+ L QL TV P+ NR+N  EKYI
Sbjct: 137 VIGTLYITTKRLAFCSDYPMCHHPFSLQHQCLYYKVVIQLGQLGTVTPATNRFNSREKYI 196

Query: 177 HVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGLV 216
            + T DGYEF FMGF+SYD+ALKTL E L ++ + S G V
Sbjct: 197 EIFTVDGYEFLFMGFVSYDRALKTLNEVLHQYGNHSSGNV 236

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357116515|ref|XP_003560026.1| PREDICTED: GEM-like protein 1-like [Brachypodium distachyon]

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 110/210 (52%), Positives = 153/210 (72%), Gaps = 7/210 (3%)

Query: 1   MSSDNYNNNNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHL 60
           +++++    NPY+ +TP  AS ++  S   I + L R GK  ED TRKA     N+W+HL
Sbjct: 31  VTAESNGEGNPYVLVTPASASPSTCQS---IRKALGRYGKLLEDGTRKAADTTGNIWNHL 87

Query: 61  RISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGT 120
           R +P ++DAA+A++ QGTKV+ EGG+++VF Q F  + GE+L KAYACY+STS GP+IGT
Sbjct: 88  RTAPNMADAAVARLTQGTKVYAEGGHDRVFHQVFGAVPGEQLRKAYACYLSTSTGPIIGT 147

Query: 121 LYISTQRMAFCSDYPLSHYSSSGQQ----EWVYFKVVVDLDQLRTVNPSANRWNPSEKYI 176
           LY+ST R+AFCSD PL +Y     Q    E +Y+KVV+ L+QLRTV+PSA+ WN +++YI
Sbjct: 148 LYLSTARLAFCSDAPLPYYHGPTAQAQPPEPMYYKVVLPLNQLRTVSPSASMWNRADRYI 207

Query: 177 HVVTRDGYEFWFMGFISYDKALKTLTEALR 206
            + T D +EFWFMGF+SYDKALK L+EAL+
Sbjct: 208 QISTVDNHEFWFMGFVSYDKALKNLSEALQ 237

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
TAIR|locus:2133387	233	AT4G01600 "AT4G01600" [Arabido	0.899	0.841	0.520	3.5e-52
TAIR|locus:505006267	299	GEM "AT2G22475" [Arabidopsis t	0.935	0.682	0.504	5.6e-52
TAIR|locus:2032185	259	FIP1 "AT1G28200" [Arabidopsis	0.880	0.741	0.525	9.2e-52
TAIR|locus:2183901	272	AT5G13200 "AT5G13200" [Arabido	0.798	0.639	0.448	1.4e-39
TAIR|locus:2150823	222	AT5G08350 "AT5G08350" [Arabido	0.729	0.716	0.415	1.6e-31
TAIR|locus:2166806	219	AT5G23370 "AT5G23370" [Arabido	0.729	0.726	0.396	5.4e-31
TAIR|locus:2166791	210	AT5G23360 "AT5G23360" [Arabido	0.729	0.757	0.383	1.3e-29

TAIR|locus:2133387 AT4G01600 "AT4G01600" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
 Identities = 103/198 (52%), Positives = 144/198 (72%)

Query:     9 NNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSD 68
             +NPY+ +T  P S +   S  ++ E+LNRCGK+ EDATRKAE L   +  HL+ SP +SD
Sbjct:    28 DNPYVHITS-PTSASDKRSKDKVLEVLNRCGKKVEDATRKAEALVGGLKDHLKFSPSISD 86

Query:    69 AAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRM 128
             AAMA+++QGTK+  EGG E+VFQ+EF  LA EKLL ++ CYIST++GPV G +YIS +R+
Sbjct:    87 AAMARLSQGTKMIVEGGPERVFQREFGVLAVEKLLDSFVCYISTTSGPVTGVIYISNRRI 146

Query:   129 AFCSDYPLSHYSSSGQQEWV-YFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFW 187
             AFCSDY +   SS+G      Y+KVV++ +++ +++ S N   PSE+Y+H+VTRDG+EFW
Sbjct:   147 AFCSDYAIRLPSSAGGNGVAAYYKVVMEWEKISSISSSTNVLKPSERYVHMVTRDGFEFW 206

Query:   188 FMGFISYDKALKTLTEAL 205
             FMGF+SY  A   L +AL
Sbjct:   207 FMGFVSYIDAFNCLNKAL 224

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:505006267 GEM "AT2G22475" [Arabidopsis thaliana (taxid:3702)]

 Score = 539 (194.8 bits), Expect = 5.6e-52, P = 5.6e-52
 Identities = 104/206 (50%), Positives = 143/206 (69%)

Query:     2 SSDNYNNNNPYLRLTPLPASGNSGGSWGEICE-MLNRCGKRFEDATRKAECLADNVWHHL 60
             +S +   +NPY+  +P   S  S     E  + +L R GKR  +A +K E LA N W HL
Sbjct:    88 ASSSSAGSNPYIARSPAETSDASLKDTMETVKGVLGRWGKRVAEAAKKTESLAGNTWQHL 147

Query:    61 RISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGT 120
             R +P  +DAAM +IAQ TKVF EGGYEK+F+Q F     E+LL ++ACY+STS GPV+G 
Sbjct:   148 RTAPSFADAAMGRIAQSTKVFAEGGYEKIFRQTFETDPEEQLLNSFACYLSTSAGPVMGV 207

Query:   121 LYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVT 180
             LYIS+ ++A+CSD PLS Y +  Q EW Y+KVV+ L QL+ VNPSA+  NP+EKYI V++
Sbjct:   208 LYISSAKLAYCSDNPLS-YKNGDQTEWSYYKVVIPLHQLKAVNPSASIVNPAEKYIQVIS 266

Query:   181 RDGYEFWFMGFISYDKALKTLTEALR 206
              D +EFWFMGF++YD A+ +L ++L+
Sbjct:   267 VDNHEFWFMGFLNYDGAVTSLQDSLQ 292

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0010026 "trichome differentiation" evidence=IMP

GO:0010482 "regulation of epidermal cell division" evidence=IMP

GO:0048765 "root hair cell differentiation" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2032185 FIP1 "AT1G28200" [Arabidopsis thaliana (taxid:3702)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 104/198 (52%), Positives = 142/198 (71%)

Query:     9 NNPYLRLTPLPASGNSGGSWGEICEMLNRCGKRFEDATRKAECLADNVWHHLRISPRLSD 68
             +NPY+  +P PA  N+  S   + + L + GK   DAT+KAE LA N W HL+  P ++D
Sbjct:    64 SNPYV--SPSPAPRNTMDS---VKDTLGKWGKMAADATKKAEDLAGNFWQHLKTGPSVAD 118

Query:    69 AAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRM 128
             AA+++IAQGTK+  EGGYEKVF+Q F  L  EKLLK YACY+STS GPV+G +Y+ST ++
Sbjct:   119 AAVSRIAQGTKILAEGGYEKVFKQTFDCLPDEKLLKTYACYLSTSAGPVLGVMYLSTHKL 178

Query:   129 AFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWF 188
             AF SD PLS Y    Q  W Y+KVV+  +QL+ VNPS +R N S+KYI V++ D +EFWF
Sbjct:   179 AFSSDNPLS-YKEGEQTLWSYYKVVLPANQLKAVNPSTSRVNTSDKYIQVISIDNHEFWF 237

Query:   189 MGFISYDKALKTLTEALR 206
             MGF++Y+ A+K+L EA++
Sbjct:   238 MGFVTYESAVKSLQEAVQ 255

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

TAIR|locus:2183901 AT5G13200 "AT5G13200" [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 78/174 (44%), Positives = 111/174 (63%)

Query:    42 FEDATRKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEK 101
             F   +RKAE +A N+WH+L+  P +S+ A  K+    K  T+GG+E +F+Q F     E 
Sbjct:    97 FHTWSRKAETVARNLWHNLKTGPSMSETAWGKVNLTAKAITKGGFESLFRQIFGTEPNET 156

Query:   102 LLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRT 161
             L K +ACY+ST+ GPV GT+Y+S  R+AFCSD PL   + SGQ+ W Y++VVV L  + T
Sbjct:   157 LKKTFACYLSTTTGPVAGTVYLSNARVAFCSDRPLYFTAPSGQESWSYYRVVVPLANVAT 216

Query:   162 VNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGL 215
             VNP   +  P EKYI + T DG++FWFMGF++Y+KA   L  ++  F    G +
Sbjct:   217 VNPVVVKETPPEKYIQLTTVDGHDFWFMGFVNYEKATHHLLTSVSDFQTAHGSV 270

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2150823 AT5G08350 "AT5G08350" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 66/159 (41%), Positives = 100/159 (62%)

Query:    47 RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 106
             +K +   + V    +I P+L++    K++ G ++   GG EK+F++ F    GEKL K Y
Sbjct:    54 KKTDGFTNGVRDQSKIRPKLTETVKRKLSLGARILQVGGLEKIFKRLFRVSEGEKLFKMY 113

Query:   107 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 166
              CY+ST+ GP+ G L+IS+++MAFCS+  +   S  G    V++KV + L ++  VN S 
Sbjct:   114 QCYLSTTAGPIAGLLFISSKKMAFCSERSIKVDSPQGDIIRVHYKVSIPLCKIDRVNQSQ 173

Query:   167 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 205
             N   PS+KY+ VVT DG++FWFMGF+SY KA   L +AL
Sbjct:   174 NTKKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEKAL 212

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2166806 AT5G23370 "AT5G23370" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
 Identities = 63/159 (39%), Positives = 101/159 (63%)

Query:    47 RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 106
             +K +   + V    ++ P+L++    K++ G ++   GG EK++++ F     EKL KAY
Sbjct:    55 KKNDSFTNGVRDQDKLGPKLTETVKRKLSLGARILQMGGLEKIYKRLFKVSDEEKLFKAY 114

Query:   107 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 166
              CY+ST+ GP+ G L+IS++++AFCS+  +   S  G+   V++KV + L ++  VN S 
Sbjct:   115 QCYLSTTAGPIAGLLFISSKKIAFCSERSIKVASPQGELNRVHYKVSIPLCKINGVNQSQ 174

Query:   167 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 205
             N   PS+KY+ VVT DG++FWFMGF+SY KA   L +AL
Sbjct:   175 NTTKPSQKYLEVVTVDGFDFWFMGFLSYQKAFNCLEQAL 213

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166791 AT5G23360 "AT5G23360" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 61/159 (38%), Positives = 97/159 (61%)

Query:    47 RKAECLADNVWHHLRISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQEFHKLAGEKLLKAY 106
             +K +   +      ++ P+L++    K++ G K+   GG EK++++ F     EKL KAY
Sbjct:    47 KKTDSFTNGARDQDKLGPKLTETVKRKLSLGAKILQMGGLEKIYKRLFKVCDKEKLFKAY 106

Query:   107 ACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSA 166
              CY+ST+ G + G L+IS++++AFCS+  +   S  G    V++KV + L ++  VN S 
Sbjct:   107 QCYLSTTEGSIAGLLFISSKKIAFCSERSIKVTSPQGDLTRVHYKVSIPLCKINGVNQSQ 166

Query:   167 NRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 205
             N   PS++Y+ VVT D Y+FWFMGF+SY KA   L +AL
Sbjct:   167 NTKKPSQRYLEVVTVDNYDFWFMGFVSYQKAFNCLEKAL 205


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.420    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      218       218   0.00091  112 3  11 22  0.38    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  204 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.92u 0.21s 19.13t   Elapsed:  00:00:01
  Total cpu time:  18.92u 0.21s 19.13t   Elapsed:  00:00:01
  Start:  Sat May 11 12:15:39 2013   End:  Sat May 11 12:15:40 2013

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8S8F8	GEM_ARATH	No assigned EC number	0.5202	0.8990	0.6555	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	218
cd13222	127	cd13222, PH-GRAM_GEM, GLABRA 2 expression modulato	7e-82
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	6e-09
pfam02893	60	pfam02893, GRAM, GRAM domain	9e-07
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	1e-06

>gnl|CDD|241376 cd13222, PH-GRAM_GEM, GLABRA 2 expression modulator (GEM) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  239 bits (612), Expect = 7e-82
 Identities = 76/125 (60%), Positives = 92/125 (73%)

Query: 82  TEGGYEKVFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSS 141
            EGG EKVF+Q F    GEKLLKA  CY+ST+ GPV GTL+IST ++AFCSD PLS  S 
Sbjct: 2   QEGGVEKVFRQTFGVGPGEKLLKASQCYLSTTAGPVAGTLFISTAKVAFCSDRPLSFTSP 61

Query: 142 SGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTL 201
           SGQ    Y+KVV+ L +++ VNPS N  NPSEKYI +VT DG+EFWFMGF++Y KA K L
Sbjct: 62  SGQLVRSYYKVVIPLRKIKAVNPSENVKNPSEKYIQIVTVDGFEFWFMGFVNYQKAFKYL 121

Query: 202 TEALR 206
            +AL 
Sbjct: 122 QQALS 126

GEM interacts with CDT1, a pre-replication complex component that is involved in DNA replication, and with TTG1 (Transparent Testa GLABRA 1), a transcriptional regulator of epidermal cell fate. GEM controls the level of histone H3K9 methylation at the promoters of the GLABRA 2 and CAPRICE (CPC) genes, which are essential for epidermis patterning. GEM also regulates cell division in different root cell types. GEM regulates proliferation-differentiation decisions by integrating DNA replication, cell division and transcriptional controls. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 127

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 50.3 bits (121), Expect = 6e-09
 Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 12/69 (17%)

Query: 97  LAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDL 156
              EKL+  Y+CY+S   GPV G LYIS  R+ F S+ P               KVV+ L
Sbjct: 3   PEEEKLIADYSCYLSR-TGPVQGRLYISNYRLCFRSNLPGK-----------LTKVVIPL 50

Query: 157 DQLRTVNPS 165
             +  +  S
Sbjct: 51  ADITRIEKS 59

Length = 60

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 44.5 bits (106), Expect = 9e-07
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 97  LAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSD 133
              EKL+  Y+CY+     PV G LY++  R+ F SD
Sbjct: 2   PPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSD 38

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 19/109 (17%)

Query: 100 EKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVV---DL 156
           EK    Y C      GPV GTLY++  R+ F S                  ++ V    +
Sbjct: 2   EKKDVTYICP--FHVGPVEGTLYLTNYRLYFKSKER-----------DSPTELDVPLGVI 48

Query: 157 DQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL 205
            ++  V  S++  N     + +  +D        F   D + + + E L
Sbjct: 49  SRVEKVGGSSSGENS--YGLEITCKD-MRNLRFAFKQEDHSRRDIFELL 94

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.42
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.26
PF14470	96	bPH_3: Bacterial PH domain	96.38
KOG1032	590	consensus Uncharacterized conserved protein, conta	95.97
KOG4347	671	consensus GTPase-activating protein VRP [General f	93.53
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	90.28
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	82.53

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.42  E-value=7.7e-14  Score=98.47  Aligned_cols=66  Identities=29%  Similarity=0.506  Sum_probs=46.0

Q ss_pred             eeeecccCCccchhhhhhcceeecCCCcceeeEEeecceEEEeeCCCceeeCCCCCeeeEEEEEEEeccccccccC
Q 027849           89 VFQQEFHKLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNP  164 (218)
Q Consensus        89 iFkQ~F~v~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnp  164 (218)
                      -|++.|...++|+|...|.|+|.++.+|+.|.||||+.+++|+|+.+-.-.          ++++|||..|..|+.
T Consensus         2 ~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~----------~~~~ipl~~I~~i~k   67 (69)
T PF02893_consen    2 KFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKT----------CKFVIPLSDIKSIEK   67 (69)
T ss_dssp             ---------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-----------EEEEEGGGEEEEEE
T ss_pred             cccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCce----------EEEEEEhHheeEEEE
Confidence            589999999999999999999999999999999999999999998766521          699999999999864

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.26  E-value=5e-12  Score=87.31  Aligned_cols=59  Identities=42%  Similarity=0.691  Sum_probs=51.1

Q ss_pred             CCccchhhhhhcceeecCCCcceeeEEeecceEEEeeCCCceeeCCCCCeeeEEEEEEEeccccccccCC
Q 027849           96 KLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPS  165 (218)
Q Consensus        96 v~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnps  165 (218)
                      ..++|+|+..|.|+|+ +.+|+.|.||||+.+++|+|+.+-...          .+++|||+.|.+|+..
T Consensus         2 l~~~E~l~~~~~C~l~-~~~~~~G~lyiT~~~l~F~S~~~~~~~----------~~~~ipl~~I~~i~k~   60 (61)
T smart00568        2 LPEEEKLIADYSCYLS-RDGPVQGRLYISNYRLCFRSDLPGKLT----------PKVVIPLADITRIEKS   60 (61)
T ss_pred             cCCCcEEEEEEEeEEC-CCccccEEEEEECCEEEEEccCCCCee----------EEEEEEHHHeeEEEEC
Confidence            4689999999999999 569999999999999999998765421          2999999999998653

>PF14470 bPH_3: Bacterial PH domain

Probab=96.38  E-value=0.027  Score=40.81  Aligned_cols=94  Identities=16%  Similarity=0.126  Sum_probs=67.4

Q ss_pred             CccchhhhhhcceeecCCCcceeeEEeecceEEEeeCCCceeeCCCCCeeeEEEEEEEeccccccccCCCCCCCCCCCeE
Q 027849           97 LAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYI  176 (218)
Q Consensus        97 ~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnps~n~~~p~eKYI  176 (218)
                      .+||+.+-...|.+-...+.-.|+|+++++|+-||+-.++.     +     .....||+++|.+|+-....   -...|
T Consensus         2 ~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~-----~-----~~~~~i~y~~I~~v~~~~g~---~~~~i   68 (96)
T PF14470_consen    2 KEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFG-----G-----KKFESIPYDDITSVSFKKGI---LGGKI   68 (96)
T ss_pred             cCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCC-----C-----ceEEEEEhhheEEEEEEccc---cccEE
Confidence            57899999999988766778899999999999999885442     1     23589999999999877444   34679


Q ss_pred             EEEEecCceeeeeeeccHHHHHHHHHHHHh
Q 027849          177 HVVTRDGYEFWFMGFISYDKALKTLTEALR  206 (218)
Q Consensus       177 qIvTvD~~eFWFMGFvnY~kA~k~Lq~al~  206 (218)
                      .|.| ++..+=| +-+.-+ -++-+-+.++
T Consensus        69 ~i~~-~~~~~~i-~~i~k~-~~~~~~~~i~   95 (96)
T PF14470_consen   69 TIET-NGEKIKI-DNIQKG-DVKEFYEYIK   95 (96)
T ss_pred             EEEE-CCEEEEE-EEcCHH-HHHHHHHHHh
Confidence            9999 5555444 444333 3344444443

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=95.97  E-value=0.01  Score=58.87  Aligned_cols=106  Identities=24%  Similarity=0.340  Sum_probs=84.6

Q ss_pred             CCccchhhhhhcceeecCCCcceeeEEeecceEEEeeCCCceeeCCCCCeeeEEEEEEEeccccccccCCCCCCCCCCCe
Q 027849           96 KLAGEKLLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKY  175 (218)
Q Consensus        96 v~~~EkLlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnps~n~~~p~eKY  175 (218)
                      +.+.|+|+..+.|+|.-+ =..-|-+|||...+||-|.--=.           --|||||++.|.-+....... -...-
T Consensus       117 ~~~~~~l~~~~~cal~re-illQGrmyis~~~icF~s~i~gw-----------~~~~vIpf~eI~~ikk~~tag-~fpn~  183 (590)
T KOG1032|consen  117 VPDPEILLTDYSCALQRE-ILLQGRMYISEEHICFNSNIFGW-----------ETKVVIPFDEITLIKKTKTAG-IFPNA  183 (590)
T ss_pred             CCCcceeeeecchhhccc-cccccccccccceeeecccccCc-----------cceeEEeeeeeeeeehhhhcc-CCCcc
Confidence            678999999999999987 45789999999999998874222           358999999999887776555 45667


Q ss_pred             EEEEEecCceeeeeeeccHHHHHHHHHHHHhcCCCCCCCc
Q 027849          176 IHVVTRDGYEFWFMGFISYDKALKTLTEALRRFPDTSGGL  215 (218)
Q Consensus       176 IqIvTvD~~eFWFMGFvnY~kA~k~Lq~al~~~~~~~~~~  215 (218)
                      |+|- ...--+-|.+|+.-|-+++....-+....+++|.+
T Consensus       184 i~i~-t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~  222 (590)
T KOG1032|consen  184 IEIT-TGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSP  222 (590)
T ss_pred             eEEe-cCCCcceeeecccCccHHHHHHHhhhhcccccCCc
Confidence            7877 44556678999999999998876677777777653

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=93.53  E-value=0.079  Score=53.68  Aligned_cols=99  Identities=23%  Similarity=0.213  Sum_probs=79.6

Q ss_pred             ecccCCccchhhhhhcceeecCCCc--ceeeEEeecceEEEeeCCCceeeCCCCCeeeEEEEEEEeccccccccCCCCCC
Q 027849           92 QEFHKLAGEKLLKAYACYISTSNGP--VIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRW  169 (218)
Q Consensus        92 Q~F~v~~~EkLlKa~~CYLSTtaGP--VaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnps~n~~  169 (218)
                      -.|..+  |+|.-.-.|=|-|..-|  ..|.||+||..+||.||-+=.            -.+++||.-|+.|.... ..
T Consensus        14 ~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~~------------c~~~~Pl~~vr~ve~~~-~s   78 (671)
T KOG4347|consen   14 AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEWL------------CSFITPLLAVRSVERLD-DS   78 (671)
T ss_pred             ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCccc------------ceEeeehhhhhhhhccC-cc
Confidence            456666  99999999999997774  899999999999999997654            26999999999997665 22


Q ss_pred             CCCCCeEEEEEecCceeeeeeeccHHHHHHHHHHHH
Q 027849          170 NPSEKYIHVVTRDGYEFWFMGFISYDKALKTLTEAL  205 (218)
Q Consensus       170 ~p~eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~al  205 (218)
                      +--+.=|.+.|..+-.|-|-|+..-++.+.-+..-.
T Consensus        79 s~~~~~i~~~~~~~~~~~f~~~~~r~~~~~k~~~~~  114 (671)
T KOG4347|consen   79 SLFTQLISLFTSNMVGMRFGGLTERLKLLSKLHLPP  114 (671)
T ss_pred             ccchhhhHHhhcCcceEEecchhhHHHHHHHHhchH
Confidence            233344778899999999999999988887665433

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=90.28  E-value=0.43  Score=36.06  Aligned_cols=85  Identities=19%  Similarity=0.231  Sum_probs=55.0

Q ss_pred             hhhhhcceeecCCCcceeeEEeecceEEEeeCCCceeeC-CCC---CeeeEEEEEEEeccccccccCCCCCCCCCCCeEE
Q 027849          102 LLKAYACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYS-SSG---QQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIH  177 (218)
Q Consensus       102 LlKa~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~s-p~g---~~~~~~YKVvIPL~kik~Vnps~n~~~p~eKYIq  177 (218)
                      .+-++.|-+=|..+-+.|+|.|++..+.|..|..-.... ...   ......--..+|+.+|+.|-..--..  .+--||
T Consensus         2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyll--r~~AlE   79 (106)
T PF14844_consen    2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLL--RDTALE   79 (106)
T ss_dssp             -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETT--EEEEEE
T ss_pred             EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcC--cceEEE
Confidence            445688999999999999999999999999981110000 000   01111233568999999997654443  467799


Q ss_pred             EEEecCceeee
Q 027849          178 VVTRDGYEFWF  188 (218)
Q Consensus       178 IvTvD~~eFWF  188 (218)
                      |.+.||.-|.|
T Consensus        80 iF~~dg~s~f~   90 (106)
T PF14844_consen   80 IFFSDGRSYFF   90 (106)
T ss_dssp             EEETTS-EEEE
T ss_pred             EEEcCCcEEEE
Confidence            99999998754

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=82.53  E-value=6.3  Score=27.14  Aligned_cols=64  Identities=23%  Similarity=0.258  Sum_probs=46.3

Q ss_pred             ceEEEeeCCCceeeCCCCCeeeEEEEEEEeccccccccCCCCC----CCCCCCeEEEEEecCceeeeee
Q 027849          126 QRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANR----WNPSEKYIHVVTRDGYEFWFMG  190 (218)
Q Consensus       126 ~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnps~n~----~~p~eKYIqIvTvD~~eFWFMG  190 (218)
                      +|.++-.+.-|.++....+.....++-+|||..+ .|.+..+.    ..+.+..++|.+.++-.|+|..
T Consensus        19 ~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~   86 (104)
T PF00169_consen   19 KRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSA   86 (104)
T ss_dssp             EEEEEEETTEEEEESSTTTTTESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEE
T ss_pred             EEEEEEECCEEEEEecCccccceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEc
Confidence            4555555566666665554455567889999999 77776666    3688889999999887888764

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 26/201 (12%), Positives = 52/201 (25%), Gaps = 51/201 (25%)

Query: 9   NNPYLRLTPLPASGNSGGSWGEI-CEMLNRCGKRFEDATRKAECLA--DNVWH--HLR-- 61
                ++ P   S +   S  ++    +    +R   +     CL    NV +       
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 62  -------ISPRLSDAAMAKIAQGTKVFTEGGYEKVFQQE-----FHKLAGEKL--LKAYA 107
                  ++ R         A  T   +   +      +       K    +   L    
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 108 CYISTSNGPVIGTLYISTQRM--AFCSDYPLSHYSSSGQQEWVYFKVVVDLDQL-RTVNP 164
              +    P      +S   +      D   +         W  +K  V+ D+L   +  
Sbjct: 323 LTTN----P----RRLS---IIAESIRDGLAT---------WDNWK-HVNCDKLTTIIES 361

Query: 165 SANRWNPSEKYIHVVTRDGYE 185
           S N   P+E       R  ++
Sbjct: 362 SLNVLEPAE------YRKMFD 376

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	96.29
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	84.19

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0063  Score=35.89  Aligned_cols=102  Identities=21%  Similarity=0.250  Sum_probs=62.0

Q ss_pred             CCCCCHHHHH--HCCEEECCCCCCEEEEEEECCEEEEEECCCCEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC--
Q ss_conf             7843013221--100000378760235886504277751797023389997444887998854564500377787899--
Q 027849           96 KLAGEKLLKA--YACYISTSNGPVIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNP--  171 (218)
Q Consensus        96 v~~~EkLlKa--~~CYLSTtaGPVaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnps~n~~~P--  171 (218)
                      ..|||.+.-.  -.-|+....||+-|+||+++.|+.|-++..-       .    .+.+-|||..|..+........-  
T Consensus         5 llpGE~i~~~~~~V~~~~p~~~~~~G~L~lTnyrliF~~~~~~-------~----~~~~~ipl~~I~~v~k~~~~~~~~~   73 (125)
T d1zsqa1           5 LLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERD-------P----PFVLDASLGVINRVEKIGGASSRGE   73 (125)
T ss_dssp             CCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSS-------S----CEEEEEEGGGEEEEEEECCTTCCST
T ss_pred             CCCCCEEEEEECCEEEECCCCCCCCEEEEEEEEEEEEECCCCC-------C----CEEEEECCCEEEEEEECCCCCCCCC
T ss_conf             5898678876456799766788600399998428999758888-------5----0899963201545545155322577


Q ss_pred             CCCEEEEEEECCCEEEEEEECCHHHHHHHHHHHHHCCC
Q ss_conf             78728999843952355330009999999999983399
Q 027849          172 SEKYIHVVTRDGYEFWFMGFISYDKALKTLTEALRRFP  209 (218)
Q Consensus       172 ~eKYIqIvTvD~~eFWFMGFvnY~kA~k~Lq~ai~~~~  209 (218)
                      .--.|+|+.-|.--+=| .|..=..--+.+.++|++..
T Consensus        74 ~~~~L~I~CKDfr~~~f-~f~~e~~~~~~v~~~L~~~a  110 (125)
T d1zsqa1          74 NSYGLETVCKDIRNLRF-AHKPEGRTRRSIFENLMKYA  110 (125)
T ss_dssp             TCSEEEEEETTTEEEEE-ECCGGGCCHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCEEEEE-EECCCCCHHHHHHHHHHHHC
T ss_conf             65257999556729999-98688417999999999867

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.19  E-value=1.4  Score=21.94  Aligned_cols=79  Identities=19%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             CEEEEEEECCEEEEEECCCCEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCHHH
Q ss_conf             02358865042777517970233899974448879988545645003777878997872899984395235533000999
Q 027849          117 VIGTLYISTQRMAFCSDYPLSHYSSSGQQEWVYFKVVVDLDQLRTVNPSANRWNPSEKYIHVVTRDGYEFWFMGFISYDK  196 (218)
Q Consensus       117 VaG~LfiSt~kvAFcSdrpl~~~sp~g~~~~~~YKVvIPL~kik~Vnps~n~~~P~eKYIqIvTvD~~eFWFMGFvnY~k  196 (218)
                      ..|+|||++.+++|..+.+=.            -+|.+++..|+.-..+  .+..+.--++|+.-|+-.|-| -|.|+.-
T Consensus        20 ~~GtL~l~~d~l~W~p~~~~~------------~~v~~~~~~I~~~q~S--pe~s~Kv~Lkiv~~~~~s~~F-~Ftn~~~   84 (108)
T d2rnrb1          20 QDGALYLMAERIAWAPEGKDR------------FTISHMYADIKCQKIS--PEGKAKIQLQLVLHAGDTTNF-HFSNEST   84 (108)
T ss_dssp             CEEEEEECSSEEEEEESSCSS------------CSEEEETTTEEEEEEC--CTTCSSEEEEEEETTSCEEEE-EECCTTT
T ss_pred             CCCEEEEECCEEEEECCCCCC------------CEEEEEHHHHHCEECC--CCCCCCCEEEEEEECCCEEEE-EECCHHH
T ss_conf             782899974837997389998------------5689984451231049--998640206778707973799-9778677


Q ss_pred             H-------HHHHHHHHHCCCC
Q ss_conf             9-------9999999833999
Q 027849          197 A-------LKTLTEALRRFPD  210 (218)
Q Consensus       197 A-------~k~Lq~ai~~~~~  210 (218)
                      +       -.-||++|..++.
T Consensus        85 ~~~~Rd~iK~~Lq~~i~~~k~  105 (108)
T d2rnrb1          85 AVKERDAVKDLLQQLLPKFKR  105 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
T ss_conf             788899999999999998551