Citrus Sinensis ID: 027864

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRVSFIFYRSV
ccEEEEEEccccccccccccHHHcccccHHHHHHHHHHcccccccccccEEEEEEEcccEEEEEEEEEEcccEEEEEEEcccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHcHHccccccccccEEEEcccccccccEEEEcccccccccccEEEEEEccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHccccEEcc
cccEEEEEccHHHHHEEEEEEEccccccHHHHHHHHHHHHHccccccccEEEEEEccccEEEEEEEccccccEEEEEEEcHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccHHEccEEEccccEEEEccccccccEEEEEEEccEEcccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEEccc
MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINqdknkyntpkyRFVVRFTNKDITAQIISASIAGDIVLASAYAhelpryglevgltNYAAAYCTGLLLARRVLKMLEMDAEYEghveatgedysveptenrrpfRALLDVGLVKTTTGNRVFGALKgaldggldiphsekrfagfskdskqLDAEVHRKYIYCGHVAAYMRVSFIFYRSV
mafakaqkskayfkryqvkykrrregktdyrarirlinqdknkyntpkyRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGhveatgedysveptenrrpfraLLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRVSFIFYRSV
MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFgalkgaldggldIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRVSFIFYRSV
***********YFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEAT************RPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHS**RFAGF*****QLDAEVHRKYIYCGHVAAYMRVSFIFY***
*AFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRVSFIFYRSV
*********KAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRVSFIFYRSV
*AFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRVSFIFYRS*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRVSFIFYRSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query217 2.2.26 [Sep-21-2011]
Q6UNT2302 60S ribosomal protein L5 N/A no 0.963 0.692 0.889 1e-109
P49227301 60S ribosomal protein L5- yes no 0.963 0.694 0.851 1e-105
Q8LBI1301 60S ribosomal protein L5- yes no 0.963 0.694 0.851 1e-104
A2WXX3304 60S ribosomal protein L5- N/A no 0.953 0.680 0.821 1e-101
Q0JGY1304 60S ribosomal protein L5- yes no 0.953 0.680 0.821 1e-100
Q8L4L4304 60S ribosomal protein L5- yes no 0.940 0.671 0.811 2e-97
Q4KTI3293 60S ribosomal protein L5 N/A no 0.958 0.709 0.669 3e-78
Q26481295 60S ribosomal protein L5 N/A no 0.958 0.705 0.650 5e-76
O65353297 60S ribosomal protein L5 N/A no 0.958 0.700 0.650 1e-75
Q627R7294 60S ribosomal protein L5 N/A no 0.953 0.704 0.647 1e-75
>sp|Q6UNT2|RL5_CUCSA 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1 Back     alignment and function desciption
 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/209 (88%), Positives = 202/209 (96%)

Query: 1   MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           MAFAKAQK+KAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVR +NKDI
Sbjct: 1   MAFAKAQKTKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRTSNKDI 60

Query: 61  TAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120
           TAQIISASIAGD+VLASAY+HELP+YGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE
Sbjct: 61  TAQIISASIAGDLVLASAYSHELPQYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120

Query: 121 GHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFA 180
           G+VEATGEDYSVEP + RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHS+KRFA
Sbjct: 121 GNVEATGEDYSVEPADTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query: 181 GFSKDSKQLDAEVHRKYIYCGHVAAYMRV 209
           G++K+ +QLD EVHRKYI+ GHVAAYMR 
Sbjct: 181 GYAKNGQQLDVEVHRKYIFGGHVAAYMRT 209
This protein binds 5S RNA.
Cucumis sativus (taxid: 3659)
>sp|P49227|RL52_ARATH 60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2 SV=3 Back     alignment and function description
>sp|Q8LBI1|RL51_ARATH 60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2 SV=2 Back     alignment and function description
>sp|A2WXX3|RL51_ORYSI 60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A PE=2 SV=2 Back     alignment and function description
>sp|Q0JGY1|RL51_ORYSJ 60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A PE=2 SV=1 Back     alignment and function description
>sp|Q8L4L4|RL52_ORYSJ 60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B PE=3 SV=1 Back     alignment and function description
>sp|Q4KTI3|RL5_SUBDO 60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1 Back     alignment and function description
>sp|Q26481|RL5_STYCL 60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3 Back     alignment and function description
>sp|O65353|RL5_HELAN 60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1 Back     alignment and function description
>sp|Q627R7|RL5_CAEBR 60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
296084316 333 unnamed protein product [Vitis vinifera] 0.953 0.621 0.927 1e-109
225434146301 PREDICTED: 60S ribosomal protein L5-like 0.953 0.687 0.927 1e-109
224127226297 predicted protein [Populus trichocarpa] 0.963 0.703 0.909 1e-108
224131982298 predicted protein [Populus trichocarpa] 0.958 0.697 0.899 1e-107
449435101302 PREDICTED: 60S ribosomal protein L5-like 0.963 0.692 0.889 1e-107
313586429298 60S ribosomal protein L5A [Hevea brasili 0.963 0.701 0.894 1e-107
118484032297 unknown [Populus trichocarpa] 0.963 0.703 0.899 1e-107
224121940297 predicted protein [Populus trichocarpa] 0.963 0.703 0.899 1e-107
356520322298 PREDICTED: 60S ribosomal protein L5-like 0.963 0.701 0.885 1e-107
356560595298 PREDICTED: 60S ribosomal protein L5-like 0.963 0.701 0.880 1e-106
>gi|296084316|emb|CBI24704.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/207 (92%), Positives = 200/207 (96%)

Query: 1   MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           M F KAQKSKAYFKRYQVK+KRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI
Sbjct: 33  MVFVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 92

Query: 61  TAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120
            AQI SASIAGDIVLASAY+HELP YGLEVGLTNYAAAYCTGLLLARRVLKMLEMD EYE
Sbjct: 93  IAQITSASIAGDIVLASAYSHELPHYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDGEYE 152

Query: 121 GHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFA 180
           G+VEATGEDYSVEPT++RRPFRALLDVGLV+TTTGNRVFGALKGALDGGLDIPHS+KRFA
Sbjct: 153 GNVEATGEDYSVEPTDSRRPFRALLDVGLVRTTTGNRVFGALKGALDGGLDIPHSDKRFA 212

Query: 181 GFSKDSKQLDAEVHRKYIYCGHVAAYM 207
           GFSKDSKQLDAEVHRKYIY GHV+AYM
Sbjct: 213 GFSKDSKQLDAEVHRKYIYGGHVSAYM 239

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225434146|ref|XP_002277846.1| PREDICTED: 60S ribosomal protein L5-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224127226|ref|XP_002329431.1| predicted protein [Populus trichocarpa] gi|118486443|gb|ABK95061.1| unknown [Populus trichocarpa] gi|222870481|gb|EEF07612.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224131982|ref|XP_002321226.1| predicted protein [Populus trichocarpa] gi|222861999|gb|EEE99541.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449435101|ref|XP_004135334.1| PREDICTED: 60S ribosomal protein L5-like [Cucumis sativus] gi|449529962|ref|XP_004171966.1| PREDICTED: 60S ribosomal protein L5-like [Cucumis sativus] gi|55976189|sp|Q6UNT2.1|RL5_CUCSA RecName: Full=60S ribosomal protein L5 gi|34484312|gb|AAQ72789.1| 60S ribosomal protein L5 [Cucumis sativus] Back     alignment and taxonomy information
>gi|313586429|gb|ADR71225.1| 60S ribosomal protein L5A [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|118484032|gb|ABK93902.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224121940|ref|XP_002330691.1| predicted protein [Populus trichocarpa] gi|118487797|gb|ABK95722.1| unknown [Populus trichocarpa] gi|222872295|gb|EEF09426.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356520322|ref|XP_003528812.1| PREDICTED: 60S ribosomal protein L5-like [Glycine max] Back     alignment and taxonomy information
>gi|356560595|ref|XP_003548576.1| PREDICTED: 60S ribosomal protein L5-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query217
TAIR|locus:2167042301 RPL5B "ribosomal protein L5 B" 0.963 0.694 0.794 1.1e-87
TAIR|locus:2094508301 ATL5 "ribosomal protein L5" [A 0.963 0.694 0.794 1.4e-87
WB|WBGene00004416293 rpl-5 [Caenorhabditis elegans 0.953 0.706 0.613 1.2e-65
UNIPROTKB|P46777297 RPL5 "60S ribosomal protein L5 0.958 0.700 0.602 4.7e-64
UNIPROTKB|F1S530297 RPL5 "60S ribosomal protein L5 0.958 0.700 0.602 4.7e-64
UNIPROTKB|P22451297 RPL5 "60S ribosomal protein L5 0.958 0.700 0.598 6e-64
UNIPROTKB|Q58DW5297 RPL5 "60S ribosomal protein L5 0.958 0.700 0.602 6e-64
UNIPROTKB|F1P7B0297 RPL5 "Uncharacterized protein" 0.949 0.693 0.603 1.6e-63
UNIPROTKB|F2Z4K4296 RPL5 "60S ribosomal protein L5 0.949 0.695 0.599 2e-63
FB|FBgn0064225299 RpL5 "Ribosomal protein L5" [D 0.958 0.695 0.602 2.6e-63
TAIR|locus:2167042 RPL5B "ribosomal protein L5 B" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 876 (313.4 bits), Expect = 1.1e-87, P = 1.1e-87
 Identities = 166/209 (79%), Positives = 185/209 (88%)

Query:     1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
             M F K+ KS AYFKRYQVK++RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI
Sbjct:     1 MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query:    61 TAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120
              AQI+SASIAGDIV ASAYAHELP+YGL VGLTNYAAAYCTGLLLARRVLKMLEMD EYE
Sbjct:    61 VAQIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYE 120

Query:   121 GHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFA 180
             G+VEATGED+SVEPT++RRPFRALLDVGL++TTTGNRVF            IPHS+KRFA
Sbjct:   121 GNVEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFA 180

Query:   181 GFSKDSKQLDAEVHRKYIYCGHVAAYMRV 209
             GF K++KQLDAE+HR YIY GHV+ YM++
Sbjct:   181 GFHKENKQLDAEIHRNYIYGGHVSNYMKL 209
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0008097 "5S rRNA binding" evidence=IEA
GO:0042254 "ribosome biogenesis" evidence=ISS
GO:0005730 "nucleolus" evidence=IDA
GO:0005773 "vacuole" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA
GO:0008283 "cell proliferation" evidence=IMP
GO:0009965 "leaf morphogenesis" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0001510 "RNA methylation" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2094508 ATL5 "ribosomal protein L5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00004416 rpl-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P46777 RPL5 "60S ribosomal protein L5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S530 RPL5 "60S ribosomal protein L5" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P22451 RPL5 "60S ribosomal protein L5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DW5 RPL5 "60S ribosomal protein L5" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7B0 RPL5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4K4 RPL5 "60S ribosomal protein L5" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0064225 RpL5 "Ribosomal protein L5" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8L4L4RL52_ORYSJNo assigned EC number0.81150.94000.6710yesno
P49227RL52_ARATHNo assigned EC number0.85160.96310.6943yesno
Q58DW5RL5_BOVINNo assigned EC number0.65070.95850.7003yesno
O74306RL5B_SCHPONo assigned EC number0.59520.96310.7108yesno
P49405RL5_CAEELNo assigned EC number0.63760.95390.7064yesno
Q8LBI1RL51_ARATHNo assigned EC number0.85160.96310.6943yesno
P52822RL5A_SCHPONo assigned EC number0.59520.96310.7108yesno
Q54XX3RL5_DICDINo assigned EC number0.57690.95390.7089yesno
Q0JGY1RL51_ORYSJNo assigned EC number0.82120.95390.6809yesno
Q4N655RL5_THEPANo assigned EC number0.62550.95390.6764yesno
O44248RL5_ANOGANo assigned EC number0.63630.95850.64yesno
Q9W5R8RL5_DROMENo assigned EC number0.64590.95850.6956yesno
P46777RL5_HUMANNo assigned EC number0.65070.95850.7003yesno
Q6UNT2RL5_CUCSANo assigned EC number0.88990.96310.6920N/Ano
P22451RL5_CHICKNo assigned EC number0.64590.95850.7003yesno
A2WXX3RL51_ORYSINo assigned EC number0.82120.95390.6809N/Ano
P26321RL5_YEASTNo assigned EC number0.60570.95390.6969yesno
Q4UDE7RL5_THEANNo assigned EC number0.62550.95390.6764yesno
P09895RL5_RATNo assigned EC number0.64110.95850.7003yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00034699001
SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (307 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00018552001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)
•  •••• 0.982
GSVIVG00025575001
SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (307 aa)
•  • •• 0.969
GSVIVG00018776001
SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (173 aa)
•  •••• 0.963
GSVIVG00035844001
SubName- Full=Chromosome chr10 scaffold_81, whole genome shotgun sequence; (173 aa)
•  •••• 0.961
GSVIVG00034206001
SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)
•  •••• 0.961
GSVIVG00016417001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (83 aa)
•  • •• 0.945
GSVIVG00037149001
SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (193 aa)
•  •••• 0.943
GSVIVG00034120001
SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (193 aa)
•  •••• 0.941
GSVIVG00017864001
RecName- Full=Ribosomal protein L19; (183 aa)
•  •••• 0.936
GSVIVG00024826001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (405 aa)
• ••••• 0.929

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
PTZ00069300 PTZ00069, PTZ00069, 60S ribosomal protein L5; Prov 1e-120
PRK08569193 PRK08569, rpl18p, 50S ribosomal protein L18P; Revi 3e-42
pfam00861119 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e fami 6e-40
COG0256125 COG0256, RplR, Ribosomal protein L18 [Translation, 3e-28
cd00432103 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 2e-26
pfam1420493 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-termin 6e-05
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional Back     alignment and domain information 
 Score =  343 bits (883), Expect = e-120
 Identities = 146/210 (69%), Positives = 168/210 (80%), Gaps = 2/210 (0%)

Query: 1   MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           MAF K  K+KAYFKR+QVKY+RRREGKTDY AR RLI QDKNKYN+PKYR VVR TNKDI
Sbjct: 1   MAFVKVVKNKAYFKRFQVKYRRRREGKTDYYARRRLILQDKNKYNSPKYRLVVRITNKDI 60

Query: 61  TAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120
             QI+ A+I GD VLA+AY+HELPR+G+ VGLTNYAAAY TGLLLARR+LK L +D ++E
Sbjct: 61  ICQIVYATIVGDKVLAAAYSHELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFE 120

Query: 121 GHVEATGEDYSV--EPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKR 178
           G  EA GE Y V  E  E RRPF+A+LDVGL +TTTGNRVFGALKGA+DGGL IPHS  R
Sbjct: 121 GVKEADGEYYHVDEEDDEERRPFKAILDVGLARTTTGNRVFGALKGAVDGGLHIPHSPNR 180

Query: 179 FAGFSKDSKQLDAEVHRKYIYCGHVAAYMR 208
           F G+SK+    DAEVHR  I+  HVA YM+
Sbjct: 181 FPGYSKEKDSYDAEVHRDRIFGKHVAEYMK 210

Length = 300
>gnl|CDD|236294 PRK08569, rpl18p, 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>gnl|CDD|216159 pfam00861, Ribosomal_L18p, Ribosomal L18p/L5e family Back     alignment and domain information
>gnl|CDD|223334 COG0256, RplR, Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238246 cd00432, Ribosomal_L18_L5e, Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 217
PTZ00069300 60S ribosomal protein L5; Provisional 100.0
KOG0875264 consensus 60S ribosomal protein L5 [Translation, r 100.0
PRK08569193 rpl18p 50S ribosomal protein L18P; Reviewed 100.0
COG0256125 RplR Ribosomal protein L18 [Translation, ribosomal 100.0
CHL00139109 rpl18 ribosomal protein L18; Validated 100.0
PF00861119 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPr 100.0
PRK05593117 rplR 50S ribosomal protein L18; Reviewed 100.0
TIGR00060114 L18_bact ribosomal protein L18, bacterial type. Th 100.0
cd00432103 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is 99.96
PTZ00032211 60S ribosomal protein L18; Provisional 99.96
PTZ00090233 40S ribosomal protein S11; Provisional 97.11
PF00411110 Ribosomal_S11: Ribosomal protein S11; InterPro: IP 96.78
KOG3333188 consensus Mitochondrial/chloroplast ribosomal prot 96.59
TIGR03632108 bact_S11 30S ribosomal protein S11. This model des 96.3
PRK05309128 30S ribosomal protein S11; Validated 96.04
PRK09607132 rps11p 30S ribosomal protein S11P; Reviewed 95.94
PTZ00129149 40S ribosomal protein S14; Provisional 95.61
CHL00041116 rps11 ribosomal protein S11 95.54
TIGR03628114 arch_S11P archaeal ribosomal protein S11P. This mo 93.43
COG0100129 RpsK Ribosomal protein S11 [Translation, ribosomal 90.25
KOG0408190 consensus Mitochondrial/chloroplast ribosomal prot 80.73
>PTZ00069 60S ribosomal protein L5; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.3e-89  Score=609.15  Aligned_cols=211  Identities=69%  Similarity=1.077  Sum_probs=207.8

Q ss_pred             CceeeeeccccccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEEeecCCCEEEEEEec
Q 027864            1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA   80 (217)
Q Consensus         1 m~~~k~~kn~~y~~r~~vk~RRRregkTdY~~R~rli~~~k~k~~~~kpRLvV~rSnkhIyaQIId~~~~Gd~tLasAsS   80 (217)
                      |+|+|++||+||||||||||||||||||||++|++|+.||+||||+|+||||||+||++|+|||+.+.++||.|||||+|
T Consensus         1 M~fvKv~KnkaY~~ryqvkfRRRREGKTdY~~R~rLi~q~knKynspK~RlVVR~TN~~ii~Qiv~~~~~GD~vl~sA~S   80 (300)
T PTZ00069          1 MAFVKVVKNKAYFKRFQVKYRRRREGKTDYYARRRLILQDKNKYNSPKYRLVVRITNKDIICQIVYATIVGDKVLAAAYS   80 (300)
T ss_pred             CCceeeeecccccccccchhhhhhcccccHHHHHHHHHccccccCCCCceEEEEEECCcEEEEEEEeecCCCEEEEEeeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccccccCCCcHHHHHHHHHHHHHHHHhhhcccccccCcccccCccccc-ccCCC-CCCcEEEEeecccccccCcch
Q 027864           81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSV-EPTEN-RRPFRALLDVGLVKTTTGNRV  158 (217)
Q Consensus        81 ~el~k~g~k~~~~N~~AAy~vG~LlAkRal~k~~~~~~y~Gi~e~~~~~~~~-~~~~~-~~~~~~vlD~Gl~r~~~g~rV  158 (217)
                      +||+++||+++++|++|||+||+|+|+|+|++||||+.|+|+++++|++|++ |+.|+ ++||.|+||+||.|+++|+||
T Consensus        81 ~eL~kyG~k~gl~N~~AAY~TGlL~arR~L~kl~ld~~y~G~~e~~g~~y~v~e~~~~~~rpf~a~LDiGL~rtt~G~RV  160 (300)
T PTZ00069         81 HELPRFGIPVGLTNYAAAYATGLLLARRLLKKLGLDKQFEGVKEADGEYYHVDEEDDEERRPFKAILDVGLARTTTGNRV  160 (300)
T ss_pred             hhHhhcCcCCCCccHHHHHHHHHHHHHHHHHhhcccccccCcccccCcccccccccccCCCCceEEEeeccccCCCCcee
Confidence            9999999999999999999999999999999999999999999999999999 77775 999999999999999999999


Q ss_pred             hhhhcccccCCccccCCccccCCCCCCcccCCHHhhhccccCchHHHHHHHHH
Q 027864          159 FGALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRVSF  211 (217)
Q Consensus       159 ~a~~kGa~d~GL~iPh~~~~fp~~~~~~~~~~ae~~~~ri~G~hVadY~~~~~  211 (217)
                      ||+||||+||||+||||+++|||||.|+++||||+|++||+|+|||+||+.|.
T Consensus       161 FaalKGa~DgGl~IPhs~~rfpg~d~e~~~~dAe~hR~rI~G~HVa~Ym~~Lk  213 (300)
T PTZ00069        161 FGALKGAVDGGLHIPHSPNRFPGYSKEKDSYDAEVHRDRIFGKHVAEYMKQLK  213 (300)
T ss_pred             eeehhcccccCcccCCCCCcCCCCCccccccChHHHHhhhcchhHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999884

>KOG0875 consensus 60S ribosomal protein L5 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed Back     alignment and domain information
>COG0256 RplR Ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00139 rpl18 ribosomal protein L18; Validated Back     alignment and domain information
>PF00861 Ribosomal_L18p: Ribosomal L18p/L5e family; InterPro: IPR005484 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK05593 rplR 50S ribosomal protein L18; Reviewed Back     alignment and domain information
>TIGR00060 L18_bact ribosomal protein L18, bacterial type Back     alignment and domain information
>cd00432 Ribosomal_L18_L5e Ribosomal L18/L5e: L18 (L5e) is a ribosomal protein found in the central protuberance (CP) of the large subunit Back     alignment and domain information
>PTZ00032 60S ribosomal protein L18; Provisional Back     alignment and domain information
>PTZ00090 40S ribosomal protein S11; Provisional Back     alignment and domain information
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>KOG3333 consensus Mitochondrial/chloroplast ribosomal protein L18 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR03632 bact_S11 30S ribosomal protein S11 Back     alignment and domain information
>PRK05309 30S ribosomal protein S11; Validated Back     alignment and domain information
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed Back     alignment and domain information
>PTZ00129 40S ribosomal protein S14; Provisional Back     alignment and domain information
>CHL00041 rps11 ribosomal protein S11 Back     alignment and domain information
>TIGR03628 arch_S11P archaeal ribosomal protein S11P Back     alignment and domain information
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0408 consensus Mitochondrial/chloroplast ribosomal protein S11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
3izr_Q304 Localization Of The Large Subunit Ribosomal Protein 6e-90
2zkr_n297 Structure Of A Mammalian Ribosomal 60s Subunit With 2e-63
3u5e_D297 The Structure Of The Eukaryotic Ribosome At 3.0 A R 1e-60
3izs_Q297 Localization Of The Large Subunit Ribosomal Protein 2e-60
3zf7_u308 High-resolution Cryo-electron Microscopy Structure 5e-58
1s1i_E222 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-57
3jyw_E237 Structure Of The 60s Proteins For Eukaryotic Riboso 3e-57
4a17_M301 T.Thermophila 60s Ribosomal Subunit In Complex With 1e-54
1s72_N187 Refined Crystal Structure Of The Haloarcula Marismo 2e-17
1ffk_K186 Crystal Structure Of The Large Ribosomal Subunit Fr 2e-17
3j21_O203 Promiscuous Behavior Of Proteins In Archaeal Riboso 3e-07
4gmn_B49 Structural Basis Of Rpl5 Recognition By Syo1 Length 4e-07
>pdb|3IZR|Q Chain Q, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 304 Back     alignment and structure 
Iteration: 1

 Score =  326 bits (836), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 156/207 (75%), Positives = 175/207 (84%), Gaps = 3/207 (1%)
Query: 2   AFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIT 61
            F K QK+ AYFKR+QVK+KRRR+GKTDYRARIRL NQDKNKYNTPKYRFV   TNKDIT
Sbjct: 6   GFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDIT 62
Query: 62  AQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEG 121
           AQI+ A+IAGDIV+A+AY+HELPRYGLEVGLTNYAAAYCTGLLLARRVL +  +D EYEG
Sbjct: 63  AQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEG 122
Query: 122 HVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFXXXXXXXXXXXXIPHSEKRFAG 181
           +VEATGEDY VEP + RRPFRALLDVGL++TTTGNRVF            IPHS+KRFAG
Sbjct: 123 NVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAG 182
Query: 182 FSKDSKQLDAEVHRKYIYCGHVAAYMR 208
           F KD KQLD+++HRKYIY GHVA YMR
Sbjct: 183 FKKDEKQLDSDIHRKYIYGGHVADYMR 209
>pdb|2ZKR|NN Chain n, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 297 Back     alignment and structure
>pdb|3U5E|D Chain D, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 60s Subunit, Ribosome A Length = 297 Back     alignment and structure
>pdb|3IZS|Q Chain Q, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 297 Back     alignment and structure
>pdb|3ZF7|UU Chain u, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 308 Back     alignment and structure
>pdb|1S1I|E Chain E, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 222 Back     alignment and structure
>pdb|3JYW|E Chain E, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 237 Back     alignment and structure
>pdb|4A17|M Chain M, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 301 Back     alignment and structure
>pdb|1S72|N Chain N, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 187 Back     alignment and structure
>pdb|1FFK|K Chain K, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 186 Back     alignment and structure
>pdb|3J21|O Chain O, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 203 Back     alignment and structure
>pdb|4GMN|B Chain B, Structural Basis Of Rpl5 Recognition By Syo1 Length = 49 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query217
2zkr_n297 60S ribosomal protein L5; protein-RNA complex, 60S 2e-95
3u5e_D297 60S ribosomal protein L5; translation, ribosome, r 9e-95
3iz5_Q304 60S ribosomal protein L5 (L18P); eukaryotic riboso 7e-93
4a17_M301 RPL5, 60S ribosomal protein L5; eukaryotic ribosom 2e-92
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein- 3e-60
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 297 Back     alignment and structure
 Score =  279 bits (715), Expect = 2e-95
 Identities = 135/209 (64%), Positives = 162/209 (77%), Gaps = 1/209 (0%)

Query: 1   MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60
           M F K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 60

Query: 61  TAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYE 120
             QI  A I GD+++ + YAHELP+YG++VGLTNYAAAYCTGLLLARR+L    MD  YE
Sbjct: 61  ICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 120

Query: 121 GHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRF 179
           G VE TG++Y+VE  +     F   LD GL +TTTGN+VFGALKGA+DGGL IPHS KRF
Sbjct: 121 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 180

Query: 180 AGFSKDSKQLDAEVHRKYIYCGHVAAYMR 208
            G+  +SK+ +AEVHRK+I   +VA YMR
Sbjct: 181 PGYDSESKEFNAEVHRKHIMGQNVADYMR 209
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Length = 297 Back     alignment and structure
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Length = 301 Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Length = 187 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
3u5e_D297 60S ribosomal protein L5; translation, ribosome, r 100.0
4a17_M301 RPL5, 60S ribosomal protein L5; eukaryotic ribosom 100.0
2zkr_n297 60S ribosomal protein L5; protein-RNA complex, 60S 100.0
3iz5_Q304 60S ribosomal protein L5 (L18P); eukaryotic riboso 100.0
1vq8_N187 50S ribosomal protein L18P; ribosome 50S, protein- 100.0
3j21_O203 50S ribosomal protein L18P; archaea, archaeal, KIN 100.0
3r8s_O116 50S ribosomal protein L18; protein biosynthesis, R 100.0
1ovy_A120 50S ribosomal protein L18; ribosome; NMR {Geobacil 100.0
3v2d_S112 50S ribosomal protein L18; ribosome associated inh 100.0
2zjr_L114 50S ribosomal protein L18; ribosome, large ribosom 100.0
3bbo_Q161 Ribosomal protein L18; large ribosomal subunit, sp 99.97
4gmn_B49 60S ribosomal protein L5-like protein; ARM, heat, 99.87
3j20_M137 30S ribosomal protein S11P; archaea, archaeal, KIN 96.89
2vqe_K129 30S ribosomal protein S11, 30S ribosomal protein S 96.63
3bbn_K140 Ribosomal protein S11; small ribosomal subunit, sp 96.03
3r8n_K117 30S ribosomal protein S11; protein biosynthesis, R 95.9
2xzm_K151 RPS14E; ribosome, translation; 3.93A {Tetrahymena 95.85
3u5c_O137 RP59A, 40S ribosomal protein S14-A; translation, r 95.24
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E Back     alignment and structure
Probab=100.00  E-value=3.5e-94  Score=643.88  Aligned_cols=211  Identities=60%  Similarity=0.978  Sum_probs=206.9

Q ss_pred             CceeeeeccccccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEEeecCCCEEEEEEec
Q 027864            1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA   80 (217)
Q Consensus         1 m~~~k~~kn~~y~~r~~vk~RRRregkTdY~~R~rli~~~k~k~~~~kpRLvV~rSnkhIyaQIId~~~~Gd~tLasAsS   80 (217)
                      |+|+|++||+||||||||||||||||||||++|++|++|||||||+++||||||+||+|||||||++.++||+|||||||
T Consensus         1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS   80 (297)
T 3u5e_D            1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYS   80 (297)
T ss_dssp             -CCTTSCCCHHHHHTCCCCCSTTTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEG
T ss_pred             CCceeeeeccccccccccchhhhccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999999999999997789999999999


Q ss_pred             CCccccccccCCCcHHHHHHHHHHHHHHHHhhhcccccccCcccccCcccccccCCC-CCCcEEEEeecccccccCcchh
Q 027864           81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVF  159 (217)
Q Consensus        81 ~el~k~g~k~~~~N~~AAy~vG~LlAkRal~k~~~~~~y~Gi~e~~~~~~~~~~~~~-~~~~~~vlD~Gl~r~~~g~rV~  159 (217)
                      +|++++||+.+++|++|||+||+|||+||+++||||++|+|++++|||+|++|++|+ |+||+|+||+||+|+|+|+|||
T Consensus        81 ~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVf  160 (297)
T 3u5e_D           81 HELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVF  160 (297)
T ss_dssp             GGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHH
T ss_pred             cchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceeh
Confidence            999999998889999999999999999999999999999999999999999999985 9999999999999999999999


Q ss_pred             hhhcccccCCccccCCccccCCCCCCcccCCHHhhhccccCchHHHHHHHHH
Q 027864          160 GALKGALDGGLDIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRVSF  211 (217)
Q Consensus       160 a~~kGa~d~GL~iPh~~~~fp~~~~~~~~~~ae~~~~ri~G~hVadY~~~~~  211 (217)
                      |+||||+||||+||||+++|||||+|+++||||+|++||+|+||||||++|+
T Consensus       161 aalKGA~DgGL~IPhs~~~fpg~d~e~k~~~ae~~~~~I~G~hVa~Ym~~L~  212 (297)
T 3u5e_D          161 GALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELA  212 (297)
T ss_dssp             HHHHHHHHHTCBCCCCSTTSSSEETTTTEECHHHHHHHHTTHHHHHHHHHTT
T ss_pred             hhhhcccccCcccCCCcccccCccccccccCHHHHHHHhcCccHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999997
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M Back     alignment and structure
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Back     alignment and structure
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ... Back     alignment and structure
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ... Back     alignment and structure
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1 Back     alignment and structure
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ... Back     alignment and structure
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P Back     alignment and structure
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum} Back     alignment and structure
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ... Back     alignment and structure
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Back     alignment and structure
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K* Back     alignment and structure
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 217
d1vqon1186 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {A 6e-44
d2gycm1113 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {E 6e-04
d1ovya_97 c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacill 0.003
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 186 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  143 bits (362), Expect = 6e-44
 Identities = 62/198 (31%), Positives = 89/198 (44%), Gaps = 46/198 (23%)

Query: 11  AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIA 70
           A   RY+V  +RRRE +TDY  R+RL+        + K R V R +NK + AQ+++    
Sbjct: 1   ATGPRYKVPMRRRREARTDYHQRLRLLK-------SGKPRLVARKSNKHVRAQLVTLGPN 53

Query: 71  GDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDY 130
           GD  LASA++ +L  YG E    N  +AY TGLL   R  +                   
Sbjct: 54  GDDTLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQE------------------- 94

Query: 131 SVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLD 190
                       A+LD+GL   T G++VF   +GA+D GLDIPH++   A +        
Sbjct: 95  -------AGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADW-------- 139

Query: 191 AEVHRKYIYCGHVAAYMR 208
                +     H+A Y  
Sbjct: 140 -----QRTRGAHIAEYDE 152
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Length = 113 Back     information, alignment and structure
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query217
d1vqon1186 Ribosomal protein L18 (L18p) {Archaeon Haloarcula 100.0
d2gycm1113 Ribosomal protein L18 (L18p) {Escherichia coli [Ta 99.97
d1ovya_97 Ribosomal protein L18 (L18p) {Bacillus stearotherm 99.97
d2j01s186 Ribosomal protein L18 (L18p) {Thermus thermophilus 99.95
d2zjrl1104 Ribosomal protein L18 (L18p) {Deinococcus radiodur 99.95
d2uubk1119 Ribosomal protein S11 {Thermus thermophilus [TaxId 97.07
d2qalk1117 Ribosomal protein S11 {Escherichia coli [TaxId: 56 96.71
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: Ribosomal protein L18 and S11
domain: Ribosomal protein L18 (L18p)
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=3e-61  Score=407.02  Aligned_cols=155  Identities=41%  Similarity=0.626  Sum_probs=147.7

Q ss_pred             cccccccccccccccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEEeecCCCEEEEEEecCCcccccccc
Q 027864           11 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEV   90 (217)
Q Consensus        11 ~y~~r~~vk~RRRregkTdY~~R~rli~~~k~k~~~~kpRLvV~rSnkhIyaQIId~~~~Gd~tLasAsS~el~k~g~k~   90 (217)
                      |-.||||||+||||||||||++|+||+.++       +||||||+||+|||||||+++++||.|||||||+|++++||+.
T Consensus         1 a~g~r~~vk~RRRRe~kT~y~~R~rl~~s~-------kpRLvVrrSNk~IyaQII~~d~~gd~vlaSAsS~el~k~g~k~   73 (186)
T d1vqon1           1 ATGPRYKVPMRRRREARTDYHQRLRLLKSG-------KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEA   73 (186)
T ss_dssp             CCSTTCCCCCHHHHTTCCCHHHHHHHHTTC-------SCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGSCCS
T ss_pred             CCCcchhhHHHHHHhhhhhHHHHHHHhcCC-------CCeEEEEEeCCceEEEEEEecCCCCEEEEEEecchhhhhcccc
Confidence            457999999999999999999999999887       7999999999999999998777899999999999999999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhhcccccccCcccccCcccccccCCCCCCcEEEEeecccccccCcchhhhhcccccCCc
Q 027864           91 GLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKGALDGGL  170 (217)
Q Consensus        91 ~~~N~~AAy~vG~LlAkRal~k~~~~~~y~Gi~e~~~~~~~~~~~~~~~~~~~vlD~Gl~r~~~g~rV~a~~kGa~d~GL  170 (217)
                      +++|++|||+||+|||++|+++        ||++                  |+||+|+.+++.||||||+||||+|+||
T Consensus        74 ~~~N~~AAy~~G~liA~ra~~~--------gi~~------------------vvfD~G~~~~~yhgRV~A~akgard~GL  127 (186)
T d1vqon1          74 PTGNMPSAYLTGLLAGLRAQEA--------GVEE------------------AVLDIGLNSPTPGSKVFAIQEGAIDAGL  127 (186)
T ss_dssp             CSSSHHHHHHHHHHHHHHHHHT--------TCCB------------------CEEECTTSCCCTTCHHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHhHHHHHHHHHhh--------cccc------------------eEEeeCCCCCCccchHHHHHHHHHhcCc
Confidence            9999999999999999999999        9999                  9999998888889999999999999999


Q ss_pred             cccCCccccCCCCCCcccCCHHhhhccccCchHHHHHHHHH
Q 027864          171 DIPHSEKRFAGFSKDSKQLDAEVHRKYIYCGHVAAYMRVSF  211 (217)
Q Consensus       171 ~iPh~~~~fp~~~~~~~~~~ae~~~~ri~G~hVadY~~~~~  211 (217)
                      +|||||++||++             +||+|+|||+||+.|+
T Consensus       128 ~Iph~~~~~p~~-------------~ri~G~hia~y~~~l~  155 (186)
T d1vqon1         128 DIPHNDDVLADW-------------QRTRGAHIAEYDEQLE  155 (186)
T ss_dssp             BCCCCGGGSCCH-------------HHHHTHHHHHHHHSCS
T ss_pred             cCCCCCccCCCc-------------ccccCHhHHHHHHHHH
Confidence            999999999994             6999999999999775
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p) {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure