Citrus Sinensis ID: 027883

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
Protein Sequence
MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL
Secondary Structure (PSIPRED)
cEEEEEEEEEcccHHHHHHHHHcccccccccccEEEEEEEEccccccccEEEEEEEEcccccccEEEEEEcccccccccccccEEEEEEEEEEEcccHHHHHHHHcccEEEEEEEEEEEEEEEcccEEEEEEEEEEEcccccccccccccccccEEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEHHHHHHHHHHHHHHcHccccccccccEEEEEEcccccccccHHHEEHcccccccccEEEEEEcccccccccccccEEEEEcEEEcccHHHHHHHHHHcccccHHHHHccEEEEEEEccEEEEEEEEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEIClknnpnlgnvaSEVRLLCdleqpeptwtvkhlggamrgaGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAfhfqrgaqITVTVSSVNKMLKLhatdeavpvtpgiqlvevtapassenyTEVASAVSSFCEYLApllhlskpgvstgvvPTAAAAAVSLMsdgggttl
Flexible Loop (DISEMBL)
MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLknnpnlgnVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHAtdeavpvtpGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAVSlmsdgggttl
Low Complexity Region (SEG)
MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTaaaaaVSLMSDGGGTTL
Disordered region (IsUnstruct)
**CVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAA**************
Disordered Region (DISOPRED)
MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICL************VRLLCDLEQPEPTWTVKHLGGA**********VLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSV******************IQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAV****DG*****
Disordered Region (DISEMBL)
MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL
Disordered Region (DISPRO)
MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGV********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	217	2.2.26 [Sep-21-2011]
Q9SJZ6	219	Mediator of RNA polymeras	yes	no	1.0	0.990	0.838	1e-104
Q7T3H7	208	Mediator of RNA polymeras	yes	no	0.820	0.855	0.302	3e-10
Q28GE1	208	Mediator of RNA polymeras	yes	no	0.811	0.846	0.309	7e-09
Q6DD39	208	Mediator of RNA polymeras	N/A	no	0.811	0.846	0.309	1e-08
Q9CZ82	208	Mediator of RNA polymeras	yes	no	0.820	0.855	0.271	4e-07
Q0VCD4	208	Mediator of RNA polymeras	yes	no	0.820	0.855	0.271	4e-07
Q9BUE0	208	Mediator of RNA polymeras	yes	no	0.820	0.855	0.266	5e-07
Q9XZT1	217	Mediator of RNA polymeras	yes	no	0.824	0.824	0.275	0.0002
Q966M5	232	Mediator of RNA polymeras	yes	no	0.898	0.840	0.219	0.0008

>sp|Q9SJZ6|MED18_ARATH Mediator of RNA polymerase II transcription subunit 18 OS=Arabidopsis thaliana GN=MED18 PE=1 SV=1

 Score =  378 bits (970), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/217 (83%), Positives = 207/217 (95%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV R+RLRVHE+CL++ PNLG V+SEVRLLCDL+Q
Sbjct: 3   MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62

Query: 61  PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
           PEPTWTVKH+GGAMRGAGA+QISVLVR+M+ESKVSKNALR+F ALGYKLDHELL+VGFAF
Sbjct: 63  PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122

Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
           HFQR A I+V+VSSVNKM K+HA DEAVPVTPG+Q+V+VTAPA+SENY+EVA+AVSSFCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182

Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
           +LAPL+HLSKP +STGVVPTAAAAA SLMSDGGGTTL
Sbjct: 183 FLAPLVHLSKPSISTGVVPTAAAAAASLMSDGGGTTL 219

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7T3H7|MED18_DANRE Mediator of RNA polymerase II transcription subunit 18 OS=Danio rerio GN=med18 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 93/195 (47%), Gaps = 17/195 (8%)

Query: 1   MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGN--VASEVRLLCD 57
           ME ++QG +  Q +E+L   L+G+C  +  +    HE+        GN  +    R L D
Sbjct: 19  MEYLLQGSVLDQSLESLLHRLRGLCDNMEPESFADHELVYLLKGQQGNPFILRARRSLLD 78

Query: 58  LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
              P   W +++LG    G  +     LVR+ V+   S +     N +G+++DHE +  G
Sbjct: 79  ---PSVPWHLRYLGQPEVGDKSRH--ALVRNCVDVAASHSLPDFLNEMGFRMDHEFVAKG 133

Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASAV 175
             F   R   + V VS ++++L    TD   P++    LVE  V APA  +  +E    +
Sbjct: 134 QVF---RKGVMKVVVSKLSRVLVPGNTDNTEPLSLSY-LVELSVLAPAGQDTVSE---DM 186

Query: 176 SSFCEYLAPLLHLSK 190
            SF E L PL+HL K
Sbjct: 187 RSFAEQLKPLVHLEK 201

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|Q28GE1|MED18_XENTR Mediator of RNA polymerase II transcription subunit 18 OS=Xenopus tropicalis GN=med18 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 21/197 (10%)

Query: 1   MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHE--ICLKNNPNLGNVASE--VRLL 55
           ME ++QG I  Q +E+L   L+G+C  +  +    HE    LK     G  AS   +R  
Sbjct: 19  MEYLLQGSILDQGLESLLHRLRGLCDNMEPETFADHESVYLLK-----GQQASPFVLRAR 73

Query: 56  CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
             L++P   W +++LG     AG      LVR+ V+   S         +G+++DHE + 
Sbjct: 74  RPLDRPGAPWHLRYLGQP--EAGDRSRHTLVRNCVDIATSDVLPEFLQEMGFRMDHEFVA 131

Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSENYTEVAS 173
            G   H  R   + V V  V ++L   A + A P++    LVE++  APA  +N   +A 
Sbjct: 132 RG---HLFRKGVMKVAVYKVFRVLVAGAAEGAEPLSLSY-LVELSAVAPAGQDN---IAD 184

Query: 174 AVSSFCEYLAPLLHLSK 190
            V  F E L PL+ L K
Sbjct: 185 EVRGFAEQLRPLVQLEK 201

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q6DD39|MED18_XENLA Mediator of RNA polymerase II transcription subunit 18 OS=Xenopus laevis GN=med18 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 93/197 (47%), Gaps = 21/197 (10%)

Query: 1   MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHE--ICLKNNPNLGNVASE--VRLL 55
           ME ++QG I  Q +E+L   L+G+C  +  +    HE    LK     G  AS   +R  
Sbjct: 19  MEYLLQGSILDQGLESLLHRLRGLCDNMEPETFADHESVYLLK-----GQQASPFVLRAR 73

Query: 56  CDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLR 115
             L++P   W +++LG     AG      LVR+ V+   S         +G+++DHE + 
Sbjct: 74  RPLDRPGAPWHLRYLGQP--EAGDRSRHTLVRNCVDIATSDVLPEFLQEMGFRMDHEFVA 131

Query: 116 VGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSENYTEVAS 173
            G   H  R   + V V  V ++L   A + A P++    LVE++  APA  +N   +A 
Sbjct: 132 RG---HLFRKGVMKVAVYKVFRVLVSGAAEGAEPLSLSY-LVELSAVAPAGQDN---IAD 184

Query: 174 AVSSFCEYLAPLLHLSK 190
            V  F E L PL+ L K
Sbjct: 185 EVRGFAEQLRPLVQLEK 201

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q9CZ82|MED18_MOUSE Mediator of RNA polymerase II transcription subunit 18 OS=Mus musculus GN=Med18 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)

Query: 1   MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
           ME ++QG +    +E+L   L+G+C  +  +    HE+        G  AS   +R    
Sbjct: 19  MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75

Query: 58  LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
           +++    W +++LG      G +    LVR+ V+   S+N       +G+++DHE +  G
Sbjct: 76  MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133

Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
              H  R   + V V  + ++L    TD  EA+ ++  ++L  V APA  +    V+  +
Sbjct: 134 ---HLFRKGIMKVVVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186

Query: 176 SSFCEYLAPLLHLSK 190
            +F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q0VCD4|MED18_BOVIN Mediator of RNA polymerase II transcription subunit 18 OS=Bos taurus GN=MED18 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 17/195 (8%)

Query: 1   MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
           ME ++QG +    +E+L   L+G+C  +  +    HE+        G  AS   +R    
Sbjct: 19  MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFVDHEMVFLLK---GQQASPFVLRARRS 75

Query: 58  LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
           L++    W +++LG      G +    LVR+ V+   S+N       +G+++DHE +  G
Sbjct: 76  LDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVARG 133

Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
              H  R   + + V  + ++L    TD  EA+ ++  ++L  V APA  +    V+  +
Sbjct: 134 ---HLFRKGIMKIVVYKIFRILVPGNTDNTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186

Query: 176 SSFCEYLAPLLHLSK 190
            +F E L PL+HL K
Sbjct: 187 RNFAEQLKPLVHLEK 201

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|Q9BUE0|MED18_HUMAN Mediator of RNA polymerase II transcription subunit 18 OS=Homo sapiens GN=MED18 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)

Query: 1   MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
           ME ++QG +    +E+L   L+G+C  +  +    HE+        G  AS   +R    
Sbjct: 19  MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75

Query: 58  LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
           +++    W +++LG      G +    LVR+ V+   S+N       +G+++DHE +  G
Sbjct: 76  MDRAGAPWHLRYLGQP--EMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133

Query: 118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
              H  R   + + V  + ++L    TD  EA+ ++  ++L  V APA  +    V+  +
Sbjct: 134 ---HLFRKGIMKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186

Query: 176 SSFCEYLAPLLHLSK 190
            +F E L PL+HL K
Sbjct: 187 KNFAEQLKPLVHLEK 201

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q9XZT1|MED18_DROME Mediator of RNA polymerase II transcription subunit 18 OS=Drosophila melanogaster GN=MED18 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 17/196 (8%)

Query: 1   MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVH--EICLK-NNPNLGNVASEVRLLC 56
           +E ++QG I    VE L   L+G+C  V       H  E+C+    PN  N    +R+  
Sbjct: 23  LEYLLQGSILDSAVEHLMHRLKGLCDNVDTSPEPFHDLEVCMSLRQPN-ANQPLLLRVRR 81

Query: 57  DLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
            L +  P + +++LG         +   LVRS ++   +   L     +G++L+ E +  
Sbjct: 82  ALGRDAP-FQMRYLGNPEVDL---RRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAK 137

Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASA 174
           G+ F   R  ++ +TVS + K++     D A        +VE  V AP   EN   V   
Sbjct: 138 GYMF---RKGRMKITVSKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQEN---VGEE 191

Query: 175 VSSFCEYLAPLLHLSK 190
           +  F E L PL+ L K
Sbjct: 192 MRVFAEQLKPLVQLEK 207

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Drosophila melanogaster (taxid: 7227)

>sp|Q966M5|MED18_CAEEL Mediator of RNA polymerase II transcription subunit 18 OS=Caenorhabditis elegans GN=mdt-18 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 92/210 (43%), Gaps = 15/210 (7%)

Query: 2   ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLK-NNPNLGNVASEVRLLCDLE- 59
           ECV+ G I  ++V  LE  L G+C    +    HE+     +  + ++ ++++L      
Sbjct: 27  ECVLYGSIFAKNVPDLERRLAGLCDPGCEEFFEHEMSFSLRSSGIMDIKTDIKLRRRFRT 86

Query: 60  --QPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKV-SKNALRLFNALGYKLDHELLRV 116
             + +  W +K++G        ++   +VR  + S V S++ +    +LG ++D+E +  
Sbjct: 87  EHRIQNYWQLKYIGVP---EPDQKCPTIVRKEISSLVHSQDMMTYAKSLGLRMDYEYMTQ 143

Query: 117 GFAFHFQRGAQITVTVSSVNKMLKLHATD-EAVPVTPGIQLVEVTA--PASSENYTEVAS 173
           G          I +  S +    +    D  ++       LVE++   P S+E Y   A 
Sbjct: 144 G---KLWTKGNIKILHSILTSTSRAGTYDSNSIKSVSDSALVEISISLPESAE-YMPAAK 199

Query: 174 AVSSFCEYLAPLLHLSKPGVSTGVVPTAAA 203
           ++  F + L PL+++ K      + P  AA
Sbjct: 200 SLRDFADQLMPLVNMEKVDYWKKMFPAQAA 229

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
255584277	217	conserved hypothetical protein [Ricinus	1.0	1.0	0.907	1e-109
225458428	216	PREDICTED: mediator of RNA polymerase II	0.995	1.0	0.893	1e-107
351722377	217	uncharacterized protein LOC100500095 [Gl	1.0	1.0	0.875	1e-106
359807608	217	uncharacterized protein LOC100803031 [Gl	1.0	1.0	0.870	1e-105
449496038	217	PREDICTED: mediator of RNA polymerase II	1.0	1.0	0.866	1e-104
388509574	217	unknown [Medicago truncatula]	1.0	1.0	0.861	1e-103
18399951	219	uncharacterized protein [Arabidopsis tha	1.0	0.990	0.838	1e-103
297825115	219	hypothetical protein ARALYDRAFT_320077 [	1.0	0.990	0.829	1e-101
224093742	216	predicted protein [Populus trichocarpa]	0.995	1.0	0.847	2e-99
356567610	214	PREDICTED: mediator of RNA polymerase II	0.986	1.0	0.857	3e-98

>gi|255584277|ref|XP_002532875.1| conserved hypothetical protein [Ricinus communis] gi|223527360|gb|EEF29504.1| conserved hypothetical protein [Ricinus communis]

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/217 (90%), Positives = 208/217 (95%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGVHR+RLR+HE+CLK+ PNLG VASEVRLLCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVHRERLRIHELCLKSGPNLGIVASEVRLLCDLEQ 60

Query: 61  PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
           PEPTWTVKH+GGAMRGAGAEQISVLVR+MVESK SKN LRLF ALGYKLDHELLRVGFAF
Sbjct: 61  PEPTWTVKHVGGAMRGAGAEQISVLVRTMVESKASKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
           HFQRGA+ITV VSSVNKMLKLHATDEAVPVTPGIQLVEVTAPA+ ENY+EV +AVSSFCE
Sbjct: 121 HFQRGARITVRVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPATPENYSEVVAAVSSFCE 180

Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
           YLAPLLHLSKPGVSTGVVPTAAAAA SLMSDGGGTTL
Sbjct: 181 YLAPLLHLSKPGVSTGVVPTAAAAAASLMSDGGGTTL 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458428|ref|XP_002283731.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18 [Vitis vinifera] gi|302142417|emb|CBI19620.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/216 (89%), Positives = 206/216 (95%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGVHR+RLR+HE+CLK+ PNLG VASEVR+LCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVHRERLRIHELCLKSGPNLGLVASEVRVLCDLEQ 60

Query: 61  PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
           PEPTW V+H+GGAMRG+GAEQISVLVR+MVESKVSKN LRLF ALGY+LDHELLRVGFAF
Sbjct: 61  PEPTWIVRHIGGAMRGSGAEQISVLVRTMVESKVSKNVLRLFYALGYRLDHELLRVGFAF 120

Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
           HFQRGA ITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENY+EVA+AVSSFCE
Sbjct: 121 HFQRGASITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYSEVAAAVSSFCE 180

Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTT 216
           YLAPLLHLSKPG STGVVPTAAAAA SLMSD G TT
Sbjct: 181 YLAPLLHLSKPGTSTGVVPTAAAAAASLMSDAGVTT 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722377|ref|NP_001236730.1| uncharacterized protein LOC100500095 [Glycine max] gi|255629097|gb|ACU14893.1| unknown [Glycine max]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 190/217 (87%), Positives = 205/217 (94%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV R+RLR+HEICLK+ P+LG VASEVRLLCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGPHLGTVASEVRLLCDLEQ 60

Query: 61  PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
            EP+WTVKH+GGAMRGAGAEQISVLVRSMVESK SKNALR+F  LGYKLDHELLRVGF+F
Sbjct: 61  AEPSWTVKHVGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSF 120

Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
           +F RGAQITVTVSS+NKMLKLHATDEAVPVTPGIQ+VEVTAPA++E Y EVASAVSSFCE
Sbjct: 121 NFHRGAQITVTVSSINKMLKLHATDEAVPVTPGIQMVEVTAPATAETYAEVASAVSSFCE 180

Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
           YLAPLLHLSKPG+STGVVPTAAAAA SLMSDGGGT L
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGGTNL 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807608|ref|NP_001241417.1| uncharacterized protein LOC100803031 [Glycine max] gi|255638120|gb|ACU19374.1| unknown [Glycine max]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/217 (87%), Positives = 205/217 (94%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV R+RLR+HEICLK+  +LG VASEVRLLCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGQHLGTVASEVRLLCDLEQ 60

Query: 61  PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
            EP+WTVKH+GGAMRGAGAEQISVLVRSMVESK SKNALR+F  LGYKLDHELLRVGF+F
Sbjct: 61  AEPSWTVKHVGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSF 120

Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
           +F RGAQITVTVSS+NKMLKLHATDEAVPVTPGIQ+VEVTAPA++E YTEVA+AVSSFCE
Sbjct: 121 NFHRGAQITVTVSSINKMLKLHATDEAVPVTPGIQMVEVTAPATAETYTEVAAAVSSFCE 180

Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
           YLAPLLHLSKPG+STGVVPTAAAAA SLMSDGG TTL
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLMSDGGSTTL 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449496038|ref|XP_004160019.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18-like [Cucumis sativus]

 Score =  382 bits (980), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/217 (86%), Positives = 205/217 (94%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQGICGV R+RLR+HEICLK+ P+LG VASEVR+LCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGICGVPRERLRLHEICLKSGPSLGAVASEVRILCDLEQ 60

Query: 61  PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
            EPTWTVKH+GGA+RGAGAEQ+SVLVR+MVESKVSKN LRLF ALGYKLDHELLRVGFAF
Sbjct: 61  AEPTWTVKHIGGAIRGAGAEQLSVLVRTMVESKVSKNVLRLFYALGYKLDHELLRVGFAF 120

Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
            F RGA ITVTVSSVNKMLKLH+TDEAVPVTPGIQLVEVTAPA+S+NY+EVA AVS+FCE
Sbjct: 121 RFHRGAHITVTVSSVNKMLKLHSTDEAVPVTPGIQLVEVTAPATSDNYSEVAGAVSTFCE 180

Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
           YLAPLLHLSKPG+STGVVPTAAAAA SL+SDG GTT+
Sbjct: 181 YLAPLLHLSKPGISTGVVPTAAAAAASLLSDGAGTTM 217

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509574|gb|AFK42853.1| unknown [Medicago truncatula]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/217 (86%), Positives = 202/217 (93%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV R+RLR+HE+CLKN P+LG V+SEVRLLCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHELCLKNGPHLGPVSSEVRLLCDLEQ 60

Query: 61  PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
            EP+WTV+H+GGAMRGAGA+QISVLVR+MVESKVSKN LR+F  LGYKLDHELLRVGF+F
Sbjct: 61  TEPSWTVRHVGGAMRGAGADQISVLVRTMVESKVSKNVLRMFYTLGYKLDHELLRVGFSF 120

Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
            F RGAQITV VSSVNKMLKLHATDEAVPVTPGIQ+VEVTAPAS ENY EVA+AV SFCE
Sbjct: 121 KFNRGAQITVRVSSVNKMLKLHATDEAVPVTPGIQMVEVTAPASDENYAEVAAAVQSFCE 180

Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
           YLAPLLHLSKPGVSTGVVPTAAAAA SLMSDGGGT L
Sbjct: 181 YLAPLLHLSKPGVSTGVVPTAAAAAASLMSDGGGTPL 217

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399951|ref|NP_565534.1| uncharacterized protein [Arabidopsis thaliana] gi|75206349|sp|Q9SJZ6.1|MED18_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit 18 gi|4544453|gb|AAD22361.1| expressed protein [Arabidopsis thaliana] gi|117168219|gb|ABK32192.1| At2g22370 [Arabidopsis thaliana] gi|330252204|gb|AEC07298.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  378 bits (970), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 182/217 (83%), Positives = 207/217 (95%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV R+RLRVHE+CL++ PNLG V+SEVRLLCDL+Q
Sbjct: 3   MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62

Query: 61  PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
           PEPTWTVKH+GGAMRGAGA+QISVLVR+M+ESKVSKNALR+F ALGYKLDHELL+VGFAF
Sbjct: 63  PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122

Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
           HFQR A I+V+VSSVNKM K+HA DEAVPVTPG+Q+V+VTAPA+SENY+EVA+AVSSFCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182

Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
           +LAPL+HLSKP +STGVVPTAAAAA SLMSDGGGTTL
Sbjct: 183 FLAPLVHLSKPSISTGVVPTAAAAAASLMSDGGGTTL 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825115|ref|XP_002880440.1| hypothetical protein ARALYDRAFT_320077 [Arabidopsis lyrata subsp. lyrata] gi|297326279|gb|EFH56699.1| hypothetical protein ARALYDRAFT_320077 [Arabidopsis lyrata subsp. lyrata]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 180/217 (82%), Positives = 205/217 (94%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV R+RLRVHE+CLK+ PNLG V+SEVRLLCDL+Q
Sbjct: 3   MECVVQGIIETQHVEALEILLQGLCGVKRERLRVHELCLKSGPNLGVVSSEVRLLCDLDQ 62

Query: 61  PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
           PEPTWTVKH+GG MRGAGA+QISV+VR+M+ESKVSKNALR+F ALGYKLDHELL+VGFAF
Sbjct: 63  PEPTWTVKHVGGPMRGAGADQISVMVRTMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122

Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
           HFQR A I+V+VSSVNKM K+HA DEAVPVTPG+Q+V+VTAPA+ ENY+EVA+AVSSFCE
Sbjct: 123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATPENYSEVAAAVSSFCE 182

Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
           +LAPL+HLSKP +STGVVPTAAAAA SLMSDGGGTTL
Sbjct: 183 FLAPLVHLSKPFISTGVVPTAAAAAASLMSDGGGTTL 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093742|ref|XP_002309971.1| predicted protein [Populus trichocarpa] gi|222852874|gb|EEE90421.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (941), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/217 (84%), Positives = 202/217 (93%), Gaps = 1/217 (0%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGVH++ LRVHE+ LK+ PNLG+V SEVRLLC+LE 
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVHKEHLRVHELYLKSGPNLGHVTSEVRLLCNLEH 60

Query: 61  PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
           PEP WTVKH+GGA+RGAGAEQISVLVR+MVESK SKN LRLF ALGYKLDHELLRVG AF
Sbjct: 61  PEP-WTVKHVGGALRGAGAEQISVLVRNMVESKASKNVLRLFYALGYKLDHELLRVGSAF 119

Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
           HF+RGA ITVTVSS+NKMLKLHA D+ +PVT GIQ+VEVTAPA+SENY+EVA+AVSSFCE
Sbjct: 120 HFKRGAWITVTVSSINKMLKLHAIDDTMPVTLGIQVVEVTAPATSENYSEVAAAVSSFCE 179

Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
           YLAPLLHLSKPGVSTGVVPTAAAAA SLMSDGGGTTL
Sbjct: 180 YLAPLLHLSKPGVSTGVVPTAAAAAASLMSDGGGTTL 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567610|ref|XP_003552010.1| PREDICTED: mediator of RNA polymerase II transcription subunit 18-like [Glycine max]

 Score =  363 bits (931), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 186/217 (85%), Positives = 201/217 (92%), Gaps = 3/217 (1%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
           MECVVQGIIETQHVEALEILLQG+CGV R+RLR+HEICLK+ P+LG VASEVRLLCDLEQ
Sbjct: 1   MECVVQGIIETQHVEALEILLQGLCGVQRERLRIHEICLKSGPHLGTVASEVRLLCDLEQ 60

Query: 61  PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
            EP+WTV H GGAMRGAGAEQISVLVRSMVESK SKNALR+F  LGYKLDHELLRVGF+F
Sbjct: 61  AEPSWTVIHAGGAMRGAGAEQISVLVRSMVESKTSKNALRMFYTLGYKLDHELLRVGFSF 120

Query: 121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
           +F RGAQITVTVSS+NKMLKLHATDEA+PVTPGIQ+VEVTAPA++E Y EVASAVSSFCE
Sbjct: 121 NFHRGAQITVTVSSINKMLKLHATDEAMPVTPGIQMVEVTAPATAETYAEVASAVSSFCE 180

Query: 181 YLAPLLHLSKPGVSTGVVPTAAAAAVSLMSDGGGTTL 217
           YLAPLLHLSKPG+STGVVP AAA   SLMSDGGGTTL
Sbjct: 181 YLAPLLHLSKPGISTGVVPAAAA---SLMSDGGGTTL 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	217
TAIR|locus:2041243	219	MED18 "AT2G22370" [Arabidopsis	1.0	0.990	0.815	4.8e-94
ZFIN|ZDB-GENE-040426-1276	208	med18 "mediator of RNA polymer	0.829	0.865	0.300	2.7e-13
MGI|MGI:1914469	208	Med18 "mediator of RNA polymer	0.820	0.855	0.271	5.7e-09
UNIPROTKB|Q0VCD4	208	MED18 "Mediator of RNA polymer	0.820	0.855	0.271	8.1e-09
UNIPROTKB|Q9BUE0	208	MED18 "Mediator of RNA polymer	0.820	0.855	0.266	8.1e-09
UNIPROTKB|I3LR60	208	MED18 "Uncharacterized protein	0.820	0.855	0.266	8.1e-09
UNIPROTKB|J9P4L8	208	MED18 "Uncharacterized protein	0.820	0.855	0.266	1.8e-08
FB|FBgn0026873	217	MED18 "Mediator complex subuni	0.824	0.824	0.275	9.9e-07
WB|WBGene00007018	232	mdt-18 [Caenorhabditis elegans	0.838	0.784	0.223	0.00033

TAIR|locus:2041243 MED18 "AT2G22370" [Arabidopsis thaliana (taxid:3702)]

 Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
 Identities = 177/217 (81%), Positives = 202/217 (93%)

Query:     1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQ 60
             MECVVQGIIETQHVEALEILLQG+CGV R+RLRVHE+CL++ PNLG V+SEVRLLCDL+Q
Sbjct:     3 MECVVQGIIETQHVEALEILLQGLCGVQRERLRVHELCLRSGPNLGVVSSEVRLLCDLDQ 62

Query:    61 PEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAF 120
             PEPTWTVKH+GGAMRGAGA+QISVLVR+M+ESKVSKNALR+F ALGYKLDHELL+VGFAF
Sbjct:    63 PEPTWTVKHVGGAMRGAGADQISVLVRNMIESKVSKNALRMFYALGYKLDHELLKVGFAF 122

Query:   121 HFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTEVASAVSSFCE 180
             HFQR A I+V+VSSVNKM K+HA DEAVPVTPG+Q+V+VTAPA+SENY+EVA+AVSSFCE
Sbjct:   123 HFQRTAHISVSVSSVNKMPKVHAIDEAVPVTPGMQIVDVTAPATSENYSEVAAAVSSFCE 182

Query:   181 YLAPLLHLSKPGVSTGVVPTXXXXXVSLMSDGGGTTL 217
             +LAPL+HLSKP +STGVVPT      SLMSDGGGTTL
Sbjct:   183 FLAPLVHLSKPSISTGVVPTAAAAAASLMSDGGGTTL 219

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0016592 "mediator complex" evidence=IDA

GO:0010219 "regulation of vernalization response" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0048440 "carpel development" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0048442 "sepal development" evidence=IGI

GO:0048443 "stamen development" evidence=IGI

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048833 "specification of floral organ number" evidence=IMP

ZFIN|ZDB-GENE-040426-1276 med18 "mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)" [Danio rerio (taxid:7955)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 58/193 (30%), Positives = 94/193 (48%)

Query:     1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLE 59
             ME ++QG +  Q +E+L   L+G+C  +  +    HE+        GN    +R    L 
Sbjct:    19 MEYLLQGSVLDQSLESLLHRLRGLCDNMEPESFADHELVYLLKGQQGNPFI-LRARRSLL 77

Query:    60 QPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFA 119
              P   W +++LG      G +    LVR+ V+   S +     N +G+++DHE +  G  
Sbjct:    78 DPSVPWHLRYLG--QPEVGDKSRHALVRNCVDVAASHSLPDFLNEMGFRMDHEFVAKGQV 135

Query:   120 FHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVE--VTAPASSENYTEVASAVSS 177
             F  ++G  + V VS ++++L    TD   P++    LVE  V APA  +  +E    + S
Sbjct:   136 F--RKGV-MKVVVSKLSRVLVPGNTDNTEPLSLSY-LVELSVLAPAGQDTVSE---DMRS 188

Query:   178 FCEYLAPLLHLSK 190
             F E L PL+HL K
Sbjct:   189 FAEQLKPLVHLEK 201

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

MGI|MGI:1914469 Med18 "mediator of RNA polymerase II transcription, subunit 18 homolog (yeast)" [Mus musculus (taxid:10090)]

 Score = 142 (55.0 bits), Expect = 5.7e-09, P = 5.7e-09
 Identities = 53/195 (27%), Positives = 95/195 (48%)

Query:     1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
             ME ++QG +    +E+L   L+G+C  +  +    HE+        G  AS   +R    
Sbjct:    19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75

Query:    58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
             +++    W +++LG      G +    LVR+ V+   S+N       +G+++DHE +  G
Sbjct:    76 MDRAGAPWHLRYLG--QPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133

Query:   118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
               F  ++G  + V V  + ++L    TD  EA+ ++  ++L  V APA  +    V+  +
Sbjct:   134 HLF--RKGI-MKVVVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186

Query:   176 SSFCEYLAPLLHLSK 190
              +F E L PL+HL K
Sbjct:   187 RNFAEQLKPLVHLEK 201

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016592 "mediator complex" evidence=ISA;IDA

UNIPROTKB|Q0VCD4 MED18 "Mediator of RNA polymerase II transcription subunit 18" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 8.1e-09, P = 8.1e-09
 Identities = 53/195 (27%), Positives = 95/195 (48%)

Query:     1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
             ME ++QG +    +E+L   L+G+C  +  +    HE+        G  AS   +R    
Sbjct:    19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFVDHEMVFLLK---GQQASPFVLRARRS 75

Query:    58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
             L++    W +++LG      G +    LVR+ V+   S+N       +G+++DHE +  G
Sbjct:    76 LDRAGAPWHLRYLG--QPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVARG 133

Query:   118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
               F  ++G  + + V  + ++L    TD  EA+ ++  ++L  V APA  +    V+  +
Sbjct:   134 HLF--RKGI-MKIVVYKIFRILVPGNTDNTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186

Query:   176 SSFCEYLAPLLHLSK 190
              +F E L PL+HL K
Sbjct:   187 RNFAEQLKPLVHLEK 201

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q9BUE0 MED18 "Mediator of RNA polymerase II transcription subunit 18" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 8.1e-09, P = 8.1e-09
 Identities = 52/195 (26%), Positives = 95/195 (48%)

Query:     1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
             ME ++QG +    +E+L   L+G+C  +  +    HE+        G  AS   +R    
Sbjct:    19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75

Query:    58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
             +++    W +++LG      G +    LVR+ V+   S+N       +G+++DHE +  G
Sbjct:    76 MDRAGAPWHLRYLG--QPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133

Query:   118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
               F  ++G  + + V  + ++L    TD  EA+ ++  ++L  V APA  +    V+  +
Sbjct:   134 HLF--RKGI-MKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186

Query:   176 SSFCEYLAPLLHLSK 190
              +F E L PL+HL K
Sbjct:   187 KNFAEQLKPLVHLEK 201

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|I3LR60 MED18 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 141 (54.7 bits), Expect = 8.1e-09, P = 8.1e-09
 Identities = 52/195 (26%), Positives = 95/195 (48%)

Query:     1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
             ME ++QG +    +E+L   L+G+C  +  +    HE+        G  AS   +R    
Sbjct:    19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75

Query:    58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
             +++    W +++LG      G +    LVR+ V+   S+N       +G+++DHE +  G
Sbjct:    76 MDRTGAPWHLRYLG--QPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133

Query:   118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
               F  ++G  + + V  + ++L    TD  EA+ ++  ++L  V APA  +    V+  +
Sbjct:   134 HLF--RKGI-MKIVVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186

Query:   176 SSFCEYLAPLLHLSK 190
              +F E L PL+HL K
Sbjct:   187 RNFAEQLKPLVHLEK 201

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|J9P4L8 MED18 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 52/195 (26%), Positives = 95/195 (48%)

Query:     1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVHEICLKNNPNLGNVASE--VRLLCD 57
             ME ++QG +    +E+L   L+G+C  +  +    HE+        G  AS   +R    
Sbjct:    19 MEYLLQGSVLDHSLESLIHRLRGLCDNMEPETFLDHEMVFLLK---GQQASPFVLRARRS 75

Query:    58 LEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVG 117
             +++    W +++LG      G +    LVR+ V+   S+N       +G+++DHE +  G
Sbjct:    76 MDRGGAPWHLRYLG--QPEMGDKNRHALVRNCVDIATSENLTDFLMEMGFRMDHEFVAKG 133

Query:   118 FAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVEVTAPASSENYTEVASAV 175
               F  ++G  + + V  + ++L    TD  EA+ ++  ++L  V APA  +    V+  +
Sbjct:   134 HLF--RKGI-MKIMVYKIFRILVPGNTDSTEALSLSYLVEL-SVVAPAGQDM---VSDDM 186

Query:   176 SSFCEYLAPLLHLSK 190
              +F E L PL+HL K
Sbjct:   187 RNFAEQLKPLVHLEK 201

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

FB|FBgn0026873 MED18 "Mediator complex subunit 18" [Drosophila melanogaster (taxid:7227)]

 Score = 128 (50.1 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 54/196 (27%), Positives = 89/196 (45%)

Query:     1 MECVVQGIIETQHVEALEILLQGIC-GVHRDRLRVH--EICLK-NNPNLGNVASEVRLLC 56
             +E ++QG I    VE L   L+G+C  V       H  E+C+    PN  N    +R+  
Sbjct:    23 LEYLLQGSILDSAVEHLMHRLKGLCDNVDTSPEPFHDLEVCMSLRQPN-ANQPLLLRVRR 81

Query:    57 DLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHELLRV 116
              L +  P + +++LG         +   LVRS ++   +   L     +G++L+ E +  
Sbjct:    82 ALGRDAP-FQMRYLGNPEVDL---RRPTLVRSCMDCACTNGILEFLTEMGFRLEFEYIAK 137

Query:   117 GFAFHFQRGAQITVTVSSVNKMLKLHATDEA-VPVTPG-IQLVEVTAPASSENYTEVASA 174
             G+ F   R  ++ +TVS + K++     D A  P++   I  + V AP   EN   V   
Sbjct:   138 GYMF---RKGRMKITVSKLIKIVPGKQQDMANEPISQSYIVELSVVAPTGQEN---VGEE 191

Query:   175 VSSFCEYLAPLLHLSK 190
             +  F E L PL+ L K
Sbjct:   192 MRVFAEQLKPLVQLEK 207

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IC;IMP

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

GO:0016592 "mediator complex" evidence=IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA;IC

GO:0005634 "nucleus" evidence=IDA

WB|WBGene00007018 mdt-18 [Caenorhabditis elegans (taxid:6239)]

 Score = 109 (43.4 bits), Expect = 0.00033, P = 0.00033
 Identities = 44/197 (22%), Positives = 90/197 (45%)

Query:     2 ECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLK-NNPNLGNVASEVRLLCDLEQ 60
             ECV+ G I  ++V  LE  L G+C    +    HE+     +  + ++ ++++L      
Sbjct:    27 ECVLYGSIFAKNVPDLERRLAGLCDPGCEEFFEHEMSFSLRSSGIMDIKTDIKLRRRFRT 86

Query:    61 P---EPTWTVKHLGGAMRGAGAEQISVLVRSMVESKV-SKNALRLFNALGYKLDHELLRV 116
                 +  W +K++G        ++   +VR  + S V S++ +    +LG ++D+E +  
Sbjct:    87 EHRIQNYWQLKYIGVPEPD---QKCPTIVRKEISSLVHSQDMMTYAKSLGLRMDYEYMTQ 143

Query:   117 GFAFHFQRGAQITVTVSSVNKMLKLHATDE-AVPVTPGIQLVEVTA--PASSENYTEVAS 173
             G  +   +G  I +  S +    +    D  ++       LVE++   P S+E Y   A 
Sbjct:   144 GKLW--TKG-NIKILHSILTSTSRAGTYDSNSIKSVSDSALVEISISLPESAE-YMPAAK 199

Query:   174 AVSSFCEYLAPLLHLSK 190
             ++  F + L PL+++ K
Sbjct:   200 SLRDFADQLMPLVNMEK 216


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      217       212   0.00083  112 3  11 22  0.37    33
                                                     31  0.49    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  159 KB (2095 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.84u 0.06s 17.90t   Elapsed:  00:00:03
  Total cpu time:  17.84u 0.06s 17.90t   Elapsed:  00:00:03
  Start:  Thu May  9 15:14:05 2013   End:  Thu May  9 15:14:08 2013

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q28GE1	MED18_XENTR	No assigned EC number	0.3096	0.8110	0.8461	yes	no
Q9SJZ6	MED18_ARATH	No assigned EC number	0.8387	1.0	0.9908	yes	no
Q7T3H7	MED18_DANRE	No assigned EC number	0.3025	0.8202	0.8557	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014703001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (216 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	217
pfam09637	243	pfam09637, Med18, Med18 protein	8e-04

>gnl|CDD|220325 pfam09637, Med18, Med18 protein

 Score = 38.9 bits (91), Expect = 8e-04
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 19/120 (15%)

Query: 84  VLVRSMVESKV-SKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLH 142
           V VR+++ES + S + L+    LGY+ D+E +  G  F       I +T+S   K+ K+ 
Sbjct: 123 VTVRTIIESDLPSGSLLQFLKELGYRFDYEYITKGVRFFKGD---IVITLS---KVFKIP 176

Query: 143 ATDEAVPVTPGIQ------LVE--VTAPASSENYTEVASAV---SSFCEYLAPLLHLSKP 191
              +       +       LVE  +  P  + +   +  AV       E L  L+ L  P
Sbjct: 177 DEGQEDSSPLELLDPSGSYLVEASINVPKGT-DIEAMNKAVAELLKLKEQLKGLVELEIP 235

Med18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators. Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	217
KOG3264	221	consensus Uncharacterized conserved protein [Funct	100.0
PF09637	250	Med18: Med18 protein; InterPro: IPR019095 The Medi	100.0
TIGR00318	174	cyaB adenylyl cyclase CyaB, putative. The protein	98.06
cd07890	169	CYTH-like_AC_IV-like Adenylyl cyclase (AC) class I	97.05
COG1437	178	CyaB Adenylate cyclase, class 2 (thermophilic) [Nu	95.93
PF01928	185	CYTH: CYTH domain; InterPro: IPR008172 The CYTH do	94.8
cd07758	196	ThTPase Thiamine Triphosphatase. ThTPase is a solu	94.61
PLN02318	656	phosphoribulokinase/uridine kinase	86.9
PF10980	128	DUF2787: Protein of unknown function (DUF2787); In	83.11

>KOG3264 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=8e-80  Score=522.23  Aligned_cols=199  Identities=51%  Similarity=0.784  Sum_probs=191.9

Q ss_pred             CeeEEEEEEeccChHHHHHHhhhhccCCCccceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCcc
Q 027883            1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAE   80 (217)
Q Consensus         1 ~Ec~LqGsi~~~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~   80 (217)
                      |||+|||||++++||+|++||+|||||++|+|++|||||...++.++.|.++|+||++++++++||+||+|+||+|  |+
T Consensus        19 mEcvlqGsI~~~~ve~Le~rL~GLCd~~~E~f~dhEmcfslr~~~~~~~~l~R~~r~ldr~~~~wqlkylG~pe~g--d~   96 (221)
T KOG3264|consen   19 MECVLQGSILDQHVEALEHRLQGLCDNQRERFRDHEMCFSLRPNLAVVPSLLRLRRDLDRPEAPWQLKYLGGPERG--DD   96 (221)
T ss_pred             chhheechHhhcchHHHHHHHHhccccchhhhhhhhheeeecCCcCccHHHHHHHHhccCCCCceEEEecCCCCcc--cc
Confidence            7999999999999999999999999999999999999998878777889999999999999999999999999975  99


Q ss_pred             CcceeeeeeEEeeeeccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCC--CCCcCCCceeEEE
Q 027883           81 QISVLVRSMVESKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATD--EAVPVTPGIQLVE  158 (217)
Q Consensus        81 ~~~a~VR~~id~~~S~~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d--~~~~~~~~s~LVE  158 (217)
                      +||++||||||++||+|+++|+++||||+||||+++||+|+   ||+|||+||+.+++..||.+|  +++|+++ |||||
T Consensus        97 ~~ptlVRn~id~~~S~n~l~~~~~lG~rlDhEy~akG~lf~---kgrmkI~vs~l~~~~~pg~~d~~s~~pvS~-sylve  172 (221)
T KOG3264|consen   97 QRPTLVRNCIDSAVSKNALRFLYELGFRLDHEYLAKGFLFR---KGRMKISVSKLSVIKVPGVHDIDSAEPVSP-SYLVE  172 (221)
T ss_pred             cccHHHHHHHHHHHhhhHHHHHHHhcccccHHHHhhhhhhc---ccceEEEEEEEEEeccCcccccccccccCc-ccEEE
Confidence            99999999999999999999999999999999999999999   799999999999999999888  7888998 69999


Q ss_pred             EE--cCCCCCChHHHHHHHHHHHhhhccceeeecCCcccCcccchhHHHH
Q 027883          159 VT--APASSENYTEVASAVSSFCEYLAPLLHLSKPGVSTGVVPTAAAAAV  206 (217)
Q Consensus       159 vS--ap~~~e~~~~~a~~i~~FaeqL~Plv~L~K~~~~~~~~~t~~~~a~  206 (217)
                      ||  ||+++||| ++|++||.|||||+|||||||||||++++||||||||
T Consensus       173 lsV~aPa~~E~~-~va~~mr~FaeqL~PLVhleKidy~r~m~p~~aa~~~  221 (221)
T KOG3264|consen  173 LSVVAPAGQENY-EVAAAMRSFAEQLKPLVHLEKIDYKRLMVPTAAAAAA  221 (221)
T ss_pred             EEEecCCccchh-hHHHHHHHHHHHhhhhhccccCChhhccccccccccC
Confidence            97  99999999 9999999999999999999999999999999999875

>PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=2.9e-39  Score=284.18  Aligned_cols=188  Identities=26%  Similarity=0.406  Sum_probs=154.7

Q ss_pred             CeeEEEEEEeccChHHHHHHhhhhccC-CCccceEEeEEEeeCC----------CCCCCCeEEEEeeeCCCC--------
Q 027883            1 MECVVQGIIETQHVEALEILLQGICGV-HRDRLRVHEICLKNNP----------NLGNVASEVRLLCDLEQP--------   61 (217)
Q Consensus         1 ~Ec~LqGsi~~~~~~~L~~RL~GLcd~-~~e~f~~hE~v~k~~~----------~~g~~~~~lRlrr~L~~p--------   61 (217)
                      |||+|+|+|.+++.+.+++||+||||+ .|++|++||+|||-.+          +.+..++.+|+++.+...        
T Consensus         1 ~El~L~~sV~~~~~~~~l~~L~gl~~~~~p~~~~~~~lvfkp~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~   80 (250)
T PF09637_consen    1 QELSLFGSVPDSDYEQLLSRLRGLCGMVQPEEFAERELVFKPNRSYKPSFLPGKNQQVQPLRMRLSQQLPKQSNGGQYYY   80 (250)
T ss_dssp             EEEEEEEEEEGGGHHHHHHHHHHHCCC--EEEEEEEEEEEEE-TTS---SB-SSSBB-GGCSEEEEEEGGGCGHSSSTSC
T ss_pred             CeEEEEEEEecchHHHHHHHHHHHhCCCCccceeeEEEEecCCCcccccccCCCcCCCcHHHHHHHHhhhhhcccccccc
Confidence            699999999999999999999999999 7999999999997321          124578899999996432        


Q ss_pred             --------------------------CCceEEEEecccccCCCccCcceeeeeeEEee---eeccHHHHHHHhCceeeEE
Q 027883           62 --------------------------EPTWTVKHLGGAMRGAGAEQISVLVRSMVESK---VSKNALRLFNALGYKLDHE  112 (217)
Q Consensus        62 --------------------------~~~W~lry~G~pe~g~g~~~~~a~VR~~id~~---~S~~v~~Fl~~LGfr~d~E  112 (217)
                                                +.+|+|||.|.||+|  + ++++++|+++++.   +++++++|+++|||+++||
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~W~Lr~~d~Pe~~--~-~~~v~~r~~~~~~i~~~~~~~~~fl~~lGy~~~~E  157 (250)
T PF09637_consen   81 QVVKDVSEDDFGIEASELFSGDDQSGSQPWTLRYSDIPEAG--K-NRPVTVRTIIESTIVGTSGSLLSFLNELGYRFDYE  157 (250)
T ss_dssp             CCCTTHSSSTT-TTGGG---------SSSEEEEEEE--GCC--S-TTSSEEEEEEEEEEEESSSSHHHHHHHTTEEEEEE
T ss_pred             ccccccccccCCccccccccccccccCCcEEEEEecCCCCC--C-CCceeEEEEEEEEEecCCCCHHHHHHHcCCceEEE
Confidence                                      478999999999973  5 8999999999998   5899999999999999999


Q ss_pred             EEEEeeEEEEeeCceEEEEEEEEeeecccCCC----CCCCc-CCCceeEEEEE--cCCCCCC--hHHHHHHHHHHHhhhc
Q 027883          113 LLRVGFAFHFQRGAQITVTVSSVNKMLKLHAT----DEAVP-VTPGIQLVEVT--APASSEN--YTEVASAVSSFCEYLA  183 (217)
Q Consensus       113 ~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~----d~~~~-~~~~s~LVEvS--ap~~~e~--~~~~a~~i~~FaeqL~  183 (217)
                      |+.+||+|.   +|+|+|+++||+++.+.+..    +...+ -.+++|+||++  +|.++|.  +..+.++|..|+|||+
T Consensus       158 yv~~G~~F~---~g~i~I~l~ri~~~~~~~~~~~~~~~l~~~d~s~~~lv~a~v~v~~~~d~~~i~~~~~~L~~~~~~Lk  234 (250)
T PF09637_consen  158 YVVEGYRFF---KGDIVIELFRIFKVPPPGQYPPPFDKLKPLDPSGSWLVEASVNVPDGTDPERINKASKELLKFQEQLK  234 (250)
T ss_dssp             EEEEEEEEE---ECCEEEEEEEEEEEETTCCE---SS-EEECTTTTEEEEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEEEE---ECCEEEEEEEEEecCCCCCCCCCcccCCccCCCCCEEEEEEEEccCCCCHHHHHHHHHHHHHHHHHhh
Confidence            999999999   59999999999999888877    44444 57788999997  7766554  5566777888999999


Q ss_pred             cceeeecCCcc
Q 027883          184 PLLHLSKPGVS  194 (217)
Q Consensus       184 Plv~L~K~~~~  194 (217)
                      |+|+|+++|+.
T Consensus       235 ~~v~L~~~DR~  245 (250)
T PF09637_consen  235 GLVDLEKPDRK  245 (250)
T ss_dssp             TTS--B---GG
T ss_pred             ccEEEEecccc
Confidence            99999999985

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A.

>TIGR00318 cyaB adenylyl cyclase CyaB, putative

Probab=98.06  E-value=0.00071  Score=56.59  Aligned_cols=144  Identities=16%  Similarity=0.182  Sum_probs=99.8

Q ss_pred             cChHHHHHHhhhhccCCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 027883           12 QHVEALEILLQGICGVHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV   90 (217)
Q Consensus        12 ~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~i   90 (217)
                      .+.+.+.++|+.+.........++-+.|-.+. ........||+|+. +   ..+.+-|=|++.    +  ....+|.-+
T Consensus        11 ~d~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~-~---~~~~lT~Kgp~~----~--~~~~~~~E~   80 (174)
T TIGR00318        11 PDKEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKL-T---GEKFVTYKGPKI----D--NESKTRKEI   80 (174)
T ss_pred             CCHHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEc-C---CcEEEEEeCCcc----C--CcceEEEEE
Confidence            36789999999765443345567777786432 11234679999986 2   345556656433    2  235699999


Q ss_pred             Eeeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCCC-CCC
Q 027883           91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPAS-SEN  167 (217)
Q Consensus        91 d~~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~~-~e~  167 (217)
                      ++.+.+  .+...|..|||+...++-+.-..|++   +.++|++..+-.            +  | +.|||-.++. ++.
T Consensus        81 e~~v~d~~~~~~iL~~LG~~~~~~v~K~R~~~~l---~~~~i~lD~v~~------------l--G-~FvEIE~~~~~~~~  142 (174)
T TIGR00318        81 EFKIEDIENALQILKKLGFKKVYEVIKKRRIYQT---NELNVSIDDVEG------------L--G-FFLEIEKIINNIND  142 (174)
T ss_pred             EEEECCHHHHHHHHHHCCCeEEEEEEEEEEEEEE---CCEEEEEEccCC------------C--c-cEEEEEEecCCccc
Confidence            999964  67779999999999999999999995   777777653322            2  5 6679976554 345


Q ss_pred             hHHHHHHHHHHHhhhc
Q 027883          168 YTEVASAVSSFCEYLA  183 (217)
Q Consensus       168 ~~~~a~~i~~FaeqL~  183 (217)
                      ..++-+.+..+|+.|-
T Consensus       143 ~~~~~~~i~~~~~~LG  158 (174)
T TIGR00318       143 KDLALEEIFEIINQLG  158 (174)
T ss_pred             hHHHHHHHHHHHHHcC
Confidence            5666677888887763

The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).

>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily

Probab=97.05  E-value=0.083  Score=43.46  Aligned_cols=144  Identities=19%  Similarity=0.245  Sum_probs=97.5

Q ss_pred             cChHHHHHHhhhhccCCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 027883           12 QHVEALEILLQGICGVHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV   90 (217)
Q Consensus        12 ~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~i   90 (217)
                      .+.+++..+|+.+.+........+-+.|-++. ........||+|+.-+  ...|.+-|=|....  |.    .-.|...
T Consensus         9 ~d~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~--~~~~~lT~K~~~~~--~~----~~~~~E~   80 (169)
T cd07890           9 DDLEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGD--SGKTLLTYKGPKLD--GG----PKVREEI   80 (169)
T ss_pred             CCHHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCC--CCcEEEEEECCCCC--CC----ccceEEE
Confidence            35788889998876665455566666675431 1123467899998732  24577777665432  21    2278888


Q ss_pred             Eeeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCCCCCCh
Q 027883           91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENY  168 (217)
Q Consensus        91 d~~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~~~e~~  168 (217)
                      ++.+.+  .+..-|+.|||+.-+.+-+.=..|.+   +...|++-.+..              .| +.+||-+...+  .
T Consensus        81 e~~v~~~~~~~~iL~~lg~~~~~~~~K~R~~~~~---~~~~v~lD~~~~--------------lG-~f~EiE~~~~~--~  140 (169)
T cd07890          81 ETEVADPEAMKEILERLGFGPVGRVKKEREIYLL---GQTRVHLDRVEG--------------LG-DFVEIEVVLED--I  140 (169)
T ss_pred             EEecCCHHHHHHHHHHcCCceeEEEEEEEEEEEE---CCEEEEEEccCC--------------CC-ceEEEEEEeCC--c
Confidence            888854  66668999999999999998889986   567777766543              34 57888544333  3


Q ss_pred             HHHHHHHHHHHhhhc
Q 027883          169 TEVASAVSSFCEYLA  183 (217)
Q Consensus       169 ~~~a~~i~~FaeqL~  183 (217)
                      .++.+.+..++++|-
T Consensus       141 ~~~~~~l~~~~~~lg  155 (169)
T cd07890         141 EEAEEGLGEAAELLG  155 (169)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            457788888888763

This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel

>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]

Probab=95.93  E-value=0.96  Score=38.95  Aligned_cols=143  Identities=14%  Similarity=0.219  Sum_probs=99.0

Q ss_pred             ChHHHHHHhhhhccCCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEE
Q 027883           13 HVEALEILLQGICGVHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVE   91 (217)
Q Consensus        13 ~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id   91 (217)
                      +.+.+..||+.+-......-.++.+-|..+- +--..+=-+|+|+..+   ..-.+-|-|.=.-   ..   .=.|.-++
T Consensus        12 d~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~---~~~~lTYKgp~ld---~~---~k~r~E~E   82 (178)
T COG1437          12 DLEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRING---GEVFLTYKGPKLD---RE---SKTREEIE   82 (178)
T ss_pred             CHHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecC---CcEEEEEeccccc---cc---ccceeeEE
Confidence            6789999999887665555566677776531 1123467789884422   3445556554331   21   14799999


Q ss_pred             eeee--ccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEE--EcCCCCCC
Q 027883           92 SKVS--KNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEV--TAPASSEN  167 (217)
Q Consensus        92 ~~~S--~~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEv--Sap~~~e~  167 (217)
                      +.++  +++.+.|+.|||+.-....+.=-.|+   .|.+.|++-.|..+              | -.|||  ..+. ++.
T Consensus        83 ~~v~D~~~~~~il~~LGF~~~~~VkK~R~iY~---~~~~~i~lD~VegL--------------G-~F~EIE~~~~d-~~e  143 (178)
T COG1437          83 IEVSDVEKALEILKRLGFKEVAVVKKTREIYK---VGNVTIELDAVEGL--------------G-DFLEIEVMVDD-ENE  143 (178)
T ss_pred             EEeCCHHHHHHHHHHcCCceeeEEEEEEEEEe---eCCEEEEEecccCC--------------c-ccEEEEEecCC-chh
Confidence            9999  49999999999999999999999999   58899888777664              1 35666  3444 333


Q ss_pred             hHHHHHHHHHHHhhhc
Q 027883          168 YTEVASAVSSFCEYLA  183 (217)
Q Consensus       168 ~~~~a~~i~~FaeqL~  183 (217)
                      ++.+-+.+..|+.+|-
T Consensus       144 ~~~~~~~~~~i~~~lG  159 (178)
T COG1437         144 IDGAKEEIEEIARQLG  159 (178)
T ss_pred             hHHHHHHHHHHHHHhC
Confidence            4455567888888874

>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []

Probab=94.80  E-value=1.8  Score=35.25  Aligned_cols=143  Identities=16%  Similarity=0.283  Sum_probs=85.5

Q ss_pred             cChHHHHHHhhhhccCCCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 027883           12 QHVEALEILLQGICGVHRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV   90 (217)
Q Consensus        12 ~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~-~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~i   90 (217)
                      ...+.|..+|..+........+.+.+-|-++.. .......||+|..-   +..|.+-|=+....|  .       |..+
T Consensus        13 ~~~~~l~~~l~~~~~~~~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~---~~~~~lTlK~~~~~~--~-------~~e~   80 (185)
T PF01928_consen   13 SDFEKLRLRLESLGAEFPKEEHQTDTYFDTPDRDLRKAGIALRIRREN---GDGWYLTLKGPGSDG--P-------REEI   80 (185)
T ss_dssp             HHHHHHHHHHHHCTEEEEEEEEEEEEEEEETTTHHHHTTSEEEEEEET---TTEEEEEEEEESSSS--S-------EEEE
T ss_pred             HHHHHHhhhhhhhccccCeEEEEEEEEEeCCChhHHhCCcEEEEEeec---CCccEEEEEccCccC--c-------cccc
Confidence            345566555666655544555555666654321 11235899999541   234555554544321  1       5555


Q ss_pred             Eeeee-----------ccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEE
Q 027883           91 ESKVS-----------KNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEV  159 (217)
Q Consensus        91 d~~~S-----------~~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEv  159 (217)
                      +..++           +++.+++..+||..-.++-+.-..|++  +| +.|.+..+.-.             . -+-+||
T Consensus        81 ~~~~~r~e~e~~i~~~~~~~~~l~~l~l~~~~~~~k~R~~~~~--~~-~~v~lD~~~~~-------------~-~~~~Ei  143 (185)
T PF01928_consen   81 EFEVSREEYEAPISDAEEMREILEALGLRPVARIEKKRRSYRL--EG-VEVELDEVDGL-------------P-GTFLEI  143 (185)
T ss_dssp             EEEESHHCCEEEHSHHHHHHHHHHHTTCEEEEEEEEEEEEEEE--TT-EEEEEEEETTT-------------T-EEEEEE
T ss_pred             ceeecchhhhccccchHHHHHHHHHhcCceeEEEEEEEEEEEE--CC-EEEEEEEEecc-------------e-EEEEEE
Confidence            55554           378999999999999999999999998  44 77666655432             3 378888


Q ss_pred             EcCCC-CCChHHHHHHHHHHHhhhc
Q 027883          160 TAPAS-SENYTEVASAVSSFCEYLA  183 (217)
Q Consensus       160 Sap~~-~e~~~~~a~~i~~FaeqL~  183 (217)
                      =+.++ .+...++.+.|..+...|.
T Consensus       144 E~~~~~~~~~~~~~~~i~~~~~~l~  168 (185)
T PF01928_consen  144 EIESEDEEDLKEAAEEILALLNELG  168 (185)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred             EEcCCCHhHHHHHHHHHHHHhhhcC
Confidence            54333 2233344555555555554

It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....

>cd07758 ThTPase Thiamine Triphosphatase

Probab=94.61  E-value=2.5  Score=36.15  Aligned_cols=145  Identities=10%  Similarity=0.079  Sum_probs=86.7

Q ss_pred             HHHHHHhhhhcc--CCCccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEE
Q 027883           15 EALEILLQGICG--VHRDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVE   91 (217)
Q Consensus        15 ~~L~~RL~GLcd--~~~e~f~~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id   91 (217)
                      +.+..+|+.+-.  ....+...+.+.|-++. ........||+|..      .|+++|-+.-..   .-.--...|+.+.
T Consensus        11 ~~~~~~L~~~~~~~~~~~~~~~~d~YfDtp~~~l~~~~~~LRiR~~------~~~lk~~~~~~~---~~~~~~~~~~E~~   81 (196)
T cd07758          11 PSAEERLRKLGALLELLGRRTFHDTYYDTPDNTLSLNDVWLRQRNG------QWELKIPPGGDP---PTAGANTRYEELT   81 (196)
T ss_pred             HHHHHHHHhccCccCCCceEEEeeEEEeCCChhHHhCCcEEEEECC------eEEEEecCCCCC---CCCCCcceEEecc
Confidence            455566654432  32344566666775431 12345789999964      799999432110   0011235666655


Q ss_pred             eee----------------eccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCcee
Q 027883           92 SKV----------------SKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQ  155 (217)
Q Consensus        92 ~~~----------------S~~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~  155 (217)
                      ...                .+.+.+.+..|||+.--+|-+.=..|++  ++.+.|++-.+.    .| .       . -+
T Consensus        82 ~~~~~~~~v~~~~~~~~~~~~~~~~~L~~lgf~~~~~~~k~R~~y~~--~~g~~v~LD~~~----~G-~-------~-~~  146 (196)
T cd07758          82 GEAAIAAALRKLLGGALPSAGGLGDELANLGLREFASFVTKRESWKL--DGAFRVDLDRTD----FG-Y-------S-VG  146 (196)
T ss_pred             cHHHHHHHHHHhcCCCCCcchhHHHHHhhCCCeEEEEEEEEEEEEEc--CCCcEEEEeccc----CC-c-------c-eE
Confidence            433                1235689999999999999998888886  546777776554    11 1       0 12


Q ss_pred             EEEEEcCC--CCCChHHHHHHHHHHHhhhc
Q 027883          156 LVEVTAPA--SSENYTEVASAVSSFCEYLA  183 (217)
Q Consensus       156 LVEvSap~--~~e~~~~~a~~i~~FaeqL~  183 (217)
                      =||+-+..  .++....+-+.|..|+++|.
T Consensus       147 EiE~~v~~~~~~~~~~~a~~~i~~~~~~lg  176 (196)
T cd07758         147 EVELLVEEEDNEAEVPAALAKIDELISALM  176 (196)
T ss_pred             EEEEEEecccchhhHHHHHHHHHHHHHHhC
Confidence            33333333  23455677888999999885

ThTPase is a soluble cytosolic enzyme which converts thiamine triphosphate (ThTP) to thiamine diphosphate. This catalytic activity depends on a divalent metal cofactor, for example Mg++. ThTPase regulates the intracellular concentration of ThTP, maintaining it at a low concentration in vivo. ThTP acts as a messenger in cell signaling in response to cellular stress, and in addition, can phosphorylate proteins in certain tissues. There is another class of membrane-associated enzymes in animal tissues which also convert ThTP to thiamine diphosphate, however they do not belong to this subgroup. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=86.90  E-value=26  Score=35.87  Aligned_cols=92  Identities=16%  Similarity=0.220  Sum_probs=68.7

Q ss_pred             EEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEeeeeccHHHHHHHhCceeeEE
Q 027883           34 VHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVESKVSKNALRLFNALGYKLDHE  112 (217)
Q Consensus        34 ~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id~~~S~~v~~Fl~~LGfr~d~E  112 (217)
                      .++|-|.-+. ..+...-+||+|..    +-+..|-|- .|-.   |  -|-++++-++..++=.+..-|.+|||+..-.
T Consensus       279 ~~DiYl~~P~~d~~~~~e~LRvR~~----~Gk~~Ltyk-e~i~---d--gp~ii~pk~~fEv~v~~~~gL~aLGy~~~a~  348 (656)
T PLN02318        279 TYDIYLLPPGEDPETCQSYLRMRNR----DGKYSLMFE-EWVT---D--EPFIISPRITFEVSVRLLGGLMALGYTIATI  348 (656)
T ss_pred             eeEEEecCCCCCchhccceEEEEec----CCEEEEEEe-cccc---c--CCeecCcceeEEEeeehHhHHHHcCCceEEE
Confidence            4566675331 12345788999976    557888883 4432   3  3455666777777777888999999999999


Q ss_pred             EEEEeeEEEEeeCceEEEEEEEEeee
Q 027883          113 LLRVGFAFHFQRGAQITVTVSSVNKM  138 (217)
Q Consensus       113 ~~~~G~~f~~~~~g~ikI~Vs~v~k~  138 (217)
                      +=+.=..|+   .|.+.|.+-.|..+
T Consensus       349 vkk~r~iy~---~g~v~i~lD~ve~L  371 (656)
T PLN02318        349 LKRSSHVFS---DDKVCVKIDWLEQL  371 (656)
T ss_pred             EEEEEEEEe---cCCEEEEeehhhcc
Confidence            999999999   79999998888776

>PF10980 DUF2787: Protein of unknown function (DUF2787); InterPro: IPR021248 This bacterial family of proteins has no known function

Probab=83.11  E-value=3.6  Score=33.58  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=14.2

Q ss_pred             CCCCeEEEEeeeCCCCCCceEEEEe
Q 027883           46 GNVASEVRLLCDLEQPEPTWTVKHL   70 (217)
Q Consensus        46 g~~~~~lRlrr~L~~p~~~W~lry~   70 (217)
                      |=-|||+||.|   ..+.+|+++||
T Consensus        39 GfHPVEIrl~r---~~~~~W~i~yI   60 (128)
T PF10980_consen   39 GFHPVEIRLER---SSSDQWQIVYI   60 (128)
T ss_dssp             -S--EEEEEEE----TTS-EEEEEE
T ss_pred             CcCCEEEEEEE---cCCCCEEEEEE
Confidence            56799999999   34678999954

; PDB: 2W56_A 2V1L_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	217
3c0t_A	207	Mediator of RNA polymerase II transcription subuni	2e-04

>3c0t_A Mediator of RNA polymerase II transcription subunit 18; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe} Length = 207

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 29/211 (13%), Positives = 67/211 (31%), Gaps = 29/211 (13%)

Query: 1   MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPN------LGNVASEVRL 54
            E  + G++ ++  EA+   L            + E  +   P            S +RL
Sbjct: 2   QELYLLGVVPSRRFEAVVNSLSKTLD---GPKTILEFWVVYRPKDVPPNLPRQPDSWLRL 58

Query: 55  LCDLEQPEPT---------WTVKHLGGAMRGAGAEQISVLVRSMVESKVSK-NALRLFNA 104
             ++E  + T         W++   G +      +     +R +  +K++  +       
Sbjct: 59  CSNIESHDETDTEWSKNTQWSMYLEGNSEPKREDK---CGIRPVNRAKLTNGSVTEFVEK 115

Query: 105 LGYKLDHELLRVGFAFHFQRGA----QITVTVSSVNKMLKLHATDEAVPVTPGIQL-VEV 159
           +GY+  HE +  G  + F        Q  +     +     H  +E  P    + +   V
Sbjct: 116 MGYEFSHEYIIQGLEYFFFDTTVRIYQTLIPSQQRSIKPPFHPMNEEQPWI--LHVYTHV 173

Query: 160 TAPASSENYTEVASAVSSFCEYLAPLLHLSK 190
              ++     +  + ++     L+    L  
Sbjct: 174 ADASNQVAMAKAEANLTKVKTLLSAFCDLKN 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	217
3c0t_A	207	Mediator of RNA polymerase II transcription subuni	100.0
2hzm_B	317	RNA polymerase II mediator complex subunit 18; bet	99.96
1yem_A	179	Hypothetical protein; structural genomics, southea	97.16
3ghx_A	179	Adenylate cyclase CYAB; CYTH domain, antiparallel	96.42
3n10_A	179	Adenylate cyclase 2; CYTH domain, antiparallel bar	96.34
2een_A	183	Hypothetical protein PH1819; dimer, NPPSFA, nation	96.23
2aca_A	189	Putative adenylate cyclase; NESG, VPR19, Q87NV8, s	95.27
2dc4_A	165	PH1012 protein, 165AA long hypothetical protein; d	94.93

>3c0t_A Mediator of RNA polymerase II transcription subunit 18; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-49  Score=339.92  Aligned_cols=182  Identities=13%  Similarity=0.182  Sum_probs=157.0

Q ss_pred             CeeEEEEEEeccChHHHHHHhhhhccCCCccceEEeEEEeeCCCC----CCCCeEEEEeeeC---CC------CCCceEE
Q 027883            1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPNL----GNVASEVRLLCDL---EQ------PEPTWTV   67 (217)
Q Consensus         1 ~Ec~LqGsi~~~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~~----g~~~~~lRlrr~L---~~------p~~~W~l   67 (217)
                      |||+|||+|.+++++.|+|||+||| -.|++|+|||||||..+..    +.+.+.+|+|+.+   ++      ++++|++
T Consensus         2 qE~lL~gsV~~~~~~~ll~~L~GL~-m~P~~~le~~mvfk~~~~P~~~~r~ggsy~rv~~~v~~~~~~d~~~~~~~~W~l   80 (207)
T 3c0t_A            2 QELYLLGVVPSRRFEAVVNSLSKTL-DGPKTILEFWVVYRPKDVPPNLPRQPDSWLRLCSNIESHDETDTEWSKNTQWSM   80 (207)
T ss_dssp             EEEEEEEEECGGGHHHHHHHHHHHS-EEEEEEEEEEEEEEEC------CCCGGGSEEEEEEGGGSCTTCTTGGGSSCEEE
T ss_pred             ceEEEEeecchhHHHHHHHHHhhcc-cCCeeeeEEEEEeccCCCCcccCCCCCceEEEEeecccccccccccccCCceEE
Confidence            6999999999999999999999999 5599999999999743200    1112239999999   77      4679999


Q ss_pred             EEecccccCCCccCcceeeeeeEE-eeeeccHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCC
Q 027883           68 KHLGGAMRGAGAEQISVLVRSMVE-SKVSKNALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDE  146 (217)
Q Consensus        68 ry~G~pe~g~g~~~~~a~VR~~id-~~~S~~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~  146 (217)
                      ||+|+||.   ++++||++|++++ ..+|+|+++|+++|||++||||+.+||+|+   +|+|||++++|++   ++.++.
T Consensus        81 r~~g~pEa---~~~~~~~~R~~~~a~~~sgdv~~fl~~lG~~~~~EYv~~G~~f~---~g~~kI~l~ril~---~~~p~~  151 (207)
T 3c0t_A           81 YLEGNSEP---KREDKCGIRPVNRAKLTNGSVTEFVEKMGYEFSHEYIIQGLEYF---FFDTTVRIYQTLI---PSQQRS  151 (207)
T ss_dssp             EEECCCCS---SCTTSCEEEEEEEEEECSSCHHHHHHHTTEEEEEEEEEEEEEEE---ETTEEEEEEEEEE---ESSTTC
T ss_pred             EEcCCCcC---CCcCceEEEEeecccccCCCHHHHHHHhCcceEEEEEEeeeEEE---eCCEEEEEEeeec---CCCCCc
Confidence            99999996   7889999999999 588999999999999999999999999999   6999999999999   555554


Q ss_pred             CC----cC-CCceeEEEEE--cCCCCCC--hHHHHHHHHHHHhhhccceeeecCC
Q 027883          147 AV----PV-TPGIQLVEVT--APASSEN--YTEVASAVSSFCEYLAPLLHLSKPG  192 (217)
Q Consensus       147 ~~----~~-~~~s~LVEvS--ap~~~e~--~~~~a~~i~~FaeqL~Plv~L~K~~  192 (217)
                      ..    |+ .++|||||+|  +|+++|.  +..++++|+.|||||+|+|+|+|+|
T Consensus       152 ~~pp~~pLd~S~sylle~sv~v~d~~d~~~m~~~~~~L~~f~eqLk~~V~Lek~~  206 (207)
T 3c0t_A          152 IKPPFHPMNEEQPWILHVYTHVADASNQVAMAKAEANLTKVKTLLSAFCDLKNVR  206 (207)
T ss_dssp             CSSCEEESSTTCCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHHTTTCCCBCCC
T ss_pred             cCCCccccccCcceEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHHhhceeccc
Confidence            44    33 2568999997  9998888  3347999999999999999999998

>2hzm_B RNA polymerase II mediator complex subunit 18; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 2hzs_B 3rj1_E

Probab=99.96  E-value=7.8e-29  Score=222.84  Aligned_cols=185  Identities=16%  Similarity=0.234  Sum_probs=146.2

Q ss_pred             CeeEEEEEEeccChHHHHHHhhhhccCCCccceEEeEEEeeCCC--CC--------CCCeEEEEeeeC------------
Q 027883            1 MECVVQGIIETQHVEALEILLQGICGVHRDRLRVHEICLKNNPN--LG--------NVASEVRLLCDL------------   58 (217)
Q Consensus         1 ~Ec~LqGsi~~~~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~--~g--------~~~~~lRlrr~L------------   58 (217)
                      |+.+|+|+|.+...+.+++-|+.|||+.|..|..+-+|+|-.|.  .|        ..+.-+|+...+            
T Consensus         2 qqLsL~s~I~~~~y~~~i~tl~~ltG~~P~~~~~~~~v~kP~p~~~~~~vn~~nqlvE~~~~k~~~~~p~~~~~~~~~~~   81 (317)
T 2hzm_B            2 QQLSLFGSIGDDGYDLLISTLTTISGNPPLLYNSLCTVWKPNPSYDVENVNSRNQLVEPNRIKLSKEVPFSYLIDETMMD   81 (317)
T ss_dssp             EEEEEEEEEEGGGHHHHHHHHHHHHCSCCEEEEEEEEEEEECGGGCCC----------CCCEEEEECCCGGGTCCC----
T ss_pred             ceEEEEEecCcccHHHHHHHHHHhcCCCCeeeeeeEEEecCCCCCCccccccccchhhhhheeecccccccccccccccc
Confidence            57899999999999999999999999999999999999964331  12        222333333331            


Q ss_pred             ---------------------------------------------------CC------------------------CCC
Q 027883           59 ---------------------------------------------------EQ------------------------PEP   63 (217)
Q Consensus        59 ---------------------------------------------------~~------------------------p~~   63 (217)
                                                                         +.                        ..+
T Consensus        82 ~~~~~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  161 (317)
T 2hzm_B           82 KPLNFRILKSFTNDKIPLNYAMTRNILHNTVPQVTNFNSTNEDQNNSKHTEDTVNESRNSDDIIDVDMDASPAPSNESCS  161 (317)
T ss_dssp             CCCSGGGGGGC-----------------------------------------------------------------CCCC
T ss_pred             cccccchhhhhhccccchhHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccCcccccCC
Confidence                                                               00                        136


Q ss_pred             ceEEEEecccccCCCccCcceeeeeeEEe--eeec----cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEee
Q 027883           64 TWTVKHLGGAMRGAGAEQISVLVRSMVES--KVSK----NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNK  137 (217)
Q Consensus        64 ~W~lry~G~pe~g~g~~~~~a~VR~~id~--~~S~----~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k  137 (217)
                      +|+|||.|.||.   ++++++++|+++++  .+|+    ++++|+++|||+++|||+.+||+|.+  ||.|+|+++||++
T Consensus       162 pW~Lr~~DiPEA---gknr~Vt~R~i~eS~l~~s~~~~~svl~FL~eLGY~fd~EYV~kG~~F~~--kgdI~I~L~KI~~  236 (317)
T 2hzm_B          162 PWSLQISDIPAA---GNNRSVSMQTIAETIILSSAGKNSSVSSLMNGLGYVFEFQYLTIGVKFFM--KHGLILELQKIWQ  236 (317)
T ss_dssp             CEEEEEEEC---------CCSEEEEEEEEEEEEEEETTCSHHHHHHHTTEEEEEEEEEEEEEEEC--GGGCEEEEEEEEE
T ss_pred             ceEEEecCCCCC---CCCCceEEEEEEeeeeecCCCCcccHHHHHHHcCCceeEEEEEEEEEEEE--cCCEEEEEEEEEe
Confidence            799999999996   47899999999997  4588    99999999999999999999999996  7999999999999


Q ss_pred             ecccCCCCCCCcCCCceeEEEEE--cCCCCCC--hHHHHHHHHHHHhhhccceeeecCCcc
Q 027883          138 MLKLHATDEAVPVTPGIQLVEVT--APASSEN--YTEVASAVSSFCEYLAPLLHLSKPGVS  194 (217)
Q Consensus       138 ~~~~g~~d~~~~~~~~s~LVEvS--ap~~~e~--~~~~a~~i~~FaeqL~Plv~L~K~~~~  194 (217)
                      +...+ .+   ...+++||||+|  +|.+.|.  +..++++|+.|+|||+|+|+|+++|..
T Consensus       237 ~~~~~-~~---~d~SgsylLkasV~V~~~tD~d~i~~as~eL~~LkeqLkglVeLE~pDR~  293 (317)
T 2hzm_B          237 IEEAG-NS---QITSGGFLLKAYINVSRGTDIDRINYTETVLMNLKKELQGYIELSVPDRQ  293 (317)
T ss_dssp             EETTE-EE---ETTTTEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTTCCCBCCCHH
T ss_pred             eCCCC-CC---CCCCCceEEEEEEEecCCCCHHHHHHHHHHHHHHHHHhhhhcceeccchh
Confidence            97332 21   255779999997  8877666  556899999999999999999999963

>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2

Probab=97.16  E-value=0.048  Score=44.64  Aligned_cols=137  Identities=12%  Similarity=0.168  Sum_probs=95.4

Q ss_pred             ChHHHHHHhhhhccCCCccceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEe
Q 027883           13 HVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVES   92 (217)
Q Consensus        13 ~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id~   92 (217)
                      +++++..+|.-+......++...-+-|-++ +    ...||+|..  ..+..|.+-|=|.. .|  .    .-.|.-+++
T Consensus        18 d~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p-~----~~~LRIR~~--~~~~~~~lT~K~p~-~g--~----~k~~~E~e~   83 (179)
T 1yem_A           18 KLEDFLHTLNTFNPEFVRYEEQEDVYFEVP-R----PKLLRIRGV--HNLKKYYLTFKEIL-DE--N----NEEFYEVEF   83 (179)
T ss_dssp             CHHHHHHHHHTTCCEEEEEEEEEEEEECCC-T----TEEEEEEEE--TTTTEEEEEEEEEC-SS--S----SCEEEEEEE
T ss_pred             CHHHHHHHHHhcCCccCcceEEEEEEEcCC-C----CCEEEEEEE--cCCCeEEEEEeccC-CC--C----ccceeEEEE
Confidence            689999999987765445555555556543 1    289999975  22457999988766 32  2    226666666


Q ss_pred             eeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCCCCCChHH
Q 027883           93 KVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTE  170 (217)
Q Consensus        93 ~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~~~e~~~~  170 (217)
                      .+++  .+..+|..|||.....+-+.-+.|.+   +...|.+..+..              .| ..|||=....  ..+.
T Consensus        84 ~v~d~~~~~~iL~~LG~~~~~~i~K~R~~~~~---~~~~i~lD~~~~--------------lG-~f~EIE~~~~--~~e~  143 (179)
T 1yem_A           84 EIGDFEKAVEVFKRLGFKIQATIKKKRWVYKL---NGVTLEVNRVEG--------------IG-DFVDIEVISD--SPEE  143 (179)
T ss_dssp             EESCHHHHHHHHHHTTCCEEEEEEEEEEEEEE---TTEEEEEEEETT--------------TE-EEEEEEEECS--CHHH
T ss_pred             EeCCHHHHHHHHHHCCCcEEEEEEEEEEEEEE---CCEEEEEEecCC--------------CC-CEEEEEEecC--ChHH
Confidence            6665  57778999999999999999999996   567887777532              34 5667743332  3445


Q ss_pred             HHHHHHHHHhhhc
Q 027883          171 VASAVSSFCEYLA  183 (217)
Q Consensus       171 ~a~~i~~FaeqL~  183 (217)
                      +...+..|+++|-
T Consensus       144 ~~~~~~~ll~~LG  156 (179)
T 1yem_A          144 AKEKIWEVAKMLG  156 (179)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC
Confidence            6778888888874

>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A

Probab=96.34  E-value=0.27  Score=39.46  Aligned_cols=138  Identities=12%  Similarity=0.142  Sum_probs=89.8

Q ss_pred             ChHHHHHHhhhhccCC-CccceEEeEEEeeCC-CCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 027883           13 HVEALEILLQGICGVH-RDRLRVHEICLKNNP-NLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV   90 (217)
Q Consensus        13 ~~~~L~~RL~GLcd~~-~e~f~~hE~v~k~~~-~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~i   90 (217)
                      +.+++..+|..+.... ....+.+-+.|-++. ........||+|+.-+  +..|++.|=| |.           +|...
T Consensus        19 d~~~~~~~L~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lRiR~~~~--~~~~~lt~kg-~~-----------~~~e~   84 (179)
T 3n10_A           19 DLTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNP--SGIRLWIVKG-PG-----------AERCE   84 (179)
T ss_dssp             CHHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEET--TCCEEEEEEC-SS-----------SSBEE
T ss_pred             CHHHHHHHHHhcCCccccceEEEEEEEEeCCChhHHhCCceEEEEecCC--CceEEEEEcC-Cc-----------cccce
Confidence            5788889988765432 233344455565432 1234578899987633  3467777743 32           34556


Q ss_pred             Eeeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCC-CCCC
Q 027883           91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPA-SSEN  167 (217)
Q Consensus        91 d~~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~-~~e~  167 (217)
                      ++.+++  .+..++..+||+.-..+-+.-..|.+   +.+.|++..+..              -| ..+||=... ..+.
T Consensus        85 e~~v~~~~~~~~~l~~lg~~~~~~~~k~R~~~~~---~~~~v~lD~v~~--------------lG-~f~EiE~e~~~~~~  146 (179)
T 3n10_A           85 ASNIEDVSKVQSMLATLGYHPAFTIEKQRSIYFV---GKFHITVDHLTG--------------LG-DFAEIAIMTDDATE  146 (179)
T ss_dssp             EEECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---TTEEEEEEEETT--------------TE-EEEEEEEEESCGGG
T ss_pred             eeccCCHHHHHHHHHhCCCeEEEEEEEEEEEEEE---CCEEEEEEeccC--------------CC-cEEEEEEEeCCCcc
Confidence            666664  78889999999999999999999995   678888776532              12 567884322 2334


Q ss_pred             hHHHHHHHHHHHhhh
Q 027883          168 YTEVASAVSSFCEYL  182 (217)
Q Consensus       168 ~~~~a~~i~~FaeqL  182 (217)
                      +..+.+.+..++.+|
T Consensus       147 ~~~~~~~~~~l~~~L  161 (179)
T 3n10_A          147 LDKLKAECRDFANTF  161 (179)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            555667788888876

>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}

Probab=96.23  E-value=0.28  Score=39.48  Aligned_cols=144  Identities=11%  Similarity=0.152  Sum_probs=90.9

Q ss_pred             hHHHHHHhhhhccCCCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEe
Q 027883           14 VEALEILLQGICGVHRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVES   92 (217)
Q Consensus        14 ~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~-~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id~   92 (217)
                      .+++.++|.. ......++..+-+-|-++.. .......||+|+.-...+..|.+.|=|....| +     .-.|.-+++
T Consensus        11 ~~~~~~~L~~-~~~~~~~~~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~-~-----~~~r~E~e~   83 (183)
T 2een_A           11 NDEIFEKVRE-TFEFMRKEIHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDE-K-----SKTRLEIEV   83 (183)
T ss_dssp             CHHHHHHHHT-TSEEEEEEEEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCT-T-----SCCEEEEEE
T ss_pred             CHHHHHHHHh-cCccCccEEEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCC-C-----ceeEEEEEE
Confidence            4567788876 33223444555555654321 11245799999532222457999997754421 1     124777777


Q ss_pred             eee-c--cHHHHHHHhCceeeEEEEEEeeEEEEeeCc-eEEEEEEEEeeecccCCCCCCCcCCCceeEEEEE--cCCCCC
Q 027883           93 KVS-K--NALRLFNALGYKLDHELLRVGFAFHFQRGA-QITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSE  166 (217)
Q Consensus        93 ~~S-~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g-~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvS--ap~~~e  166 (217)
                      .++ +  .+...|..|||..-+.+-+.-..|.+   + .+.|.+-.+..              -| ..|||=  +.. .+
T Consensus        84 ~v~~~~~~~~~~L~~lgl~~~~~~~k~R~~~~~---~~~~~v~lD~~~~--------------lg-~f~EiE~e~~~-~~  144 (183)
T 2een_A           84 EIQEDVDKYFELLDRLGFKEVLKVVKTREKYYV---EKGVTITLDEVEG--------------LG-KFIEIETLVKE-KD  144 (183)
T ss_dssp             EECSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---ETTEEEEEEEETT--------------TE-EEEEEEEECSS-GG
T ss_pred             eecCCHHHHHHHHHHCCCeEEEEEEEEEEEEEe---CCCEEEEEEeecC--------------Ce-eEEEEEEecCC-cc
Confidence            776 4  57889999999999999999999997   4 67888777531              13 244874  333 22


Q ss_pred             ChHHHHHHHHHHHhhhc
Q 027883          167 NYTEVASAVSSFCEYLA  183 (217)
Q Consensus       167 ~~~~~a~~i~~FaeqL~  183 (217)
                      ...++-..+..|+++|-
T Consensus       145 ~~~~~~~~~~~l~~~lg  161 (183)
T 2een_A          145 EIPEAVEKLEKILRELG  161 (183)
T ss_dssp             GHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHHHHcC
Confidence            44455667777777764

>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2

Probab=95.27  E-value=0.51  Score=38.48  Aligned_cols=137  Identities=12%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             ChHHHHHHhhhhcc-CCCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeE
Q 027883           13 HVEALEILLQGICG-VHRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMV   90 (217)
Q Consensus        13 ~~~~L~~RL~GLcd-~~~e~f~~hE~v~k~~~~-~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~i   90 (217)
                      +.+++..+|..+.. ....++...-+-|-++.. .......||+|+.-+.....|+++  |+...   .         +.
T Consensus        21 d~~~~~~~L~~~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~K--gp~~~---~---------~~   86 (189)
T 2aca_A           21 NHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVK--GPEAD---R---------CE   86 (189)
T ss_dssp             CHHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEE--CSSTT---B---------EE
T ss_pred             CHHHHHHHHHhcCCcccCcceEEEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEc--CCCcC---c---------eE
Confidence            57889999998766 223455555666654321 112467899997632112345654  44332   1         11


Q ss_pred             Eeeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEE--cCCCCC
Q 027883           91 ESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT--APASSE  166 (217)
Q Consensus        91 d~~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvS--ap~~~e  166 (217)
                      ++.+.+  .+...|..|||+.-+.+-+.-..|.+   +.+.|++..+..+              | ..+||=  +..++ 
T Consensus        87 e~~v~d~~~~~~~L~~lgl~~~~~~~k~R~~~~~---~~~~v~lD~~~~l--------------g-~f~EiE~e~~~~~-  147 (189)
T 2aca_A           87 ATNITKLDSAQSMLENMGYEVIQCSKKIRSIFFV---GEFHITLDFLDGF--------------G-HFAEFAIMTDDET-  147 (189)
T ss_dssp             EEEBSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---TTEEEEEEEETTT--------------E-EEEEEEEEESCSG-
T ss_pred             EEecCCHHHHHHHHHHcCCcEEEEEEEEEEEEEE---CCEEEEEEcccCC--------------e-eEEEEEEEcCCcc-
Confidence            333333  67789999999999999999999996   6788888876421              2 456763  43322 


Q ss_pred             ChHHHHHHHHHHHhhh
Q 027883          167 NYTEVASAVSSFCEYL  182 (217)
Q Consensus       167 ~~~~~a~~i~~FaeqL  182 (217)
                      ....+-+.+..|+++|
T Consensus       148 ~~~~~~~~~~~l~~~l  163 (189)
T 2aca_A          148 ALARYRERLVALAQQF  163 (189)
T ss_dssp             GGTTHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHc
Confidence            2334567888888887

>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}

Probab=94.93  E-value=1.1  Score=35.37  Aligned_cols=137  Identities=14%  Similarity=0.168  Sum_probs=90.7

Q ss_pred             ChHHHHHHhhhhccCCCccceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEe
Q 027883           13 HVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVES   92 (217)
Q Consensus        13 ~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id~   92 (217)
                      +.+++..+|..+......++..+-.-|-++.     ...||+|..  ..+..|.+-|=|.. .|      +...|.-.++
T Consensus        10 ~~~~~~~~l~~~~~~~~~~~~q~d~Yfdt~~-----~~~LRiR~~--~~~~~~~lT~K~~~-~g------~~~~~~E~e~   75 (165)
T 2dc4_A           10 NFEDIKRKIEGLGAKFFGIEEQEDVYFELPS-----PKLLRVRKI--NNTGKSYITYKEIL-DK------RNEEFYELEF   75 (165)
T ss_dssp             CHHHHHHHHHHHTCEEEEEEEEEEEEECCST-----TEEEEEEEE--TTTTEEEEEEEEEC-SS------SSCEEEEEEE
T ss_pred             CHHHHHHHHHhcCCCcCcceeEEEEEEcCCC-----CCEEEEEEE--cCCCEEEEEEeCcC-CC------CceeeeEEEE
Confidence            3567777777554432234444445555431     289999974  22467999887755 32      2347777777


Q ss_pred             eeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCCCCCChHH
Q 027883           93 KVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTE  170 (217)
Q Consensus        93 ~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~~~e~~~~  170 (217)
                      .+.+  .+...|..|||..-+.+-+.-+.|.+   +.+.|.+-.+..              .| ..+||=.+..  ....
T Consensus        76 ~i~~~~~~~~~L~~lg~~~~~~~~k~R~~~~~---~~~~i~lD~~~~--------------~g-~~~EiE~~~~--~~~~  135 (165)
T 2dc4_A           76 EVQDPEGAIELFKRLGFKVQGVVKKRRWIYKL---NNVTFELNRVEK--------------AG-DFLDIEVITS--NPEE  135 (165)
T ss_dssp             EBSCHHHHHHHHHHTTCCEEEEEEEEEEEEEE---TTEEEEEEEETT--------------TE-EEEEEEECCS--CHHH
T ss_pred             EcCCHHHHHHHHHHcCCcEEEEEEEEEEEEEE---CCEEEEEEecCC--------------Cc-cEEEEEEEcC--CHHH
Confidence            6655  56778899999999999998889986   567877776531              24 6678865543  4445


Q ss_pred             HHHHHHHHHhhhc
Q 027883          171 VASAVSSFCEYLA  183 (217)
Q Consensus       171 ~a~~i~~FaeqL~  183 (217)
                      +...+..|+++|-
T Consensus       136 ~~~~~~~l~~~lg  148 (165)
T 2dc4_A          136 GKKIIWDVARRLG  148 (165)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC
Confidence            6778888888874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	217
d1yema_	163	Hypothetical protein PF0863 {Pyrococcus furiosus [	97.38
d2acaa1	174	Putative adenylate cyclase VP1760 {Vibrio parahaem	96.15
d2jmua1	223	Thiamine-triphosphatase (ThTPase) {Mouse (Mus musc	91.44

>d1yema_ d.63.1.2 (A:) Hypothetical protein PF0863 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Hypothetical protein PF0863
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.38  E-value=0.0072  Score=46.32  Aligned_cols=137  Identities=14%  Similarity=0.186  Sum_probs=91.2

Q ss_pred             ChHHHHHHhhhhccCCCccceEEeEEEeeCCCCCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEEe
Q 027883           13 HVEALEILLQGICGVHRDRLRVHEICLKNNPNLGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVES   92 (217)
Q Consensus        13 ~~~~L~~RL~GLcd~~~e~f~~hE~v~k~~~~~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id~   92 (217)
                      +.+++.++|..+-.....+.+.+-+.|-. |    ..-.+|+|+..+  ...|.+.|-|....   .    ...|..+++
T Consensus        10 ~~~~~~~~L~~~ga~~~~~~~~~d~Yfd~-p----~~~llrvR~~~~--~~~~~lt~K~~~~~---~----~~~~~E~e~   75 (163)
T d1yema_          10 KLEDFLHTLNTFNPEFVRYEEQEDVYFEV-P----RPKLLRIRGVHN--LKKYYLTFKEILDE---N----NEEFYEVEF   75 (163)
T ss_dssp             CHHHHHHHHHTTCCEEEEEEEEEEEEECC-C----TTEEEEEEEETT--TTEEEEEEEEECSS---S----SCEEEEEEE
T ss_pred             ChHHHHHHHHhcCCcccceEEEEEeEEcc-C----ChHHhhhhhhcC--CceEEEEEeCccCC---C----CceEEEEEe
Confidence            34678888887644322223333444543 3    234588887754  33566666665432   1    236888998


Q ss_pred             eeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEEcCCCCCChHH
Q 027883           93 KVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVTAPASSENYTE  170 (217)
Q Consensus        93 ~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvSap~~~e~~~~  170 (217)
                      .+++  .+..++..|||+.-+++-++-..|.+   +.++|++..+-.              -| +.+||=+-...+  .+
T Consensus        76 ~v~~~~~~~~~l~~lg~~~~~~~~K~R~~y~~---~~~~i~lD~v~~--------------lg-~f~EiE~~~~~~--~~  135 (163)
T d1yema_          76 EIGDFEKAVEVFKRLGFKIQATIKKKRWVYKL---NGVTLEVNRVEG--------------IG-DFVDIEVISDSP--EE  135 (163)
T ss_dssp             EESCHHHHHHHHHHTTCCEEEEEEEEEEEEEE---TTEEEEEEEETT--------------TE-EEEEEEEECSCH--HH
T ss_pred             cccchHHHHHHHhhcCceEEEEEEEEEEEEEE---CCEEEEEEeeCC--------------CC-cEEEEEEEecCh--HH
Confidence            8886  78889999999999999999999996   778988876421              12 567885433222  35


Q ss_pred             HHHHHHHHHhhhc
Q 027883          171 VASAVSSFCEYLA  183 (217)
Q Consensus       171 ~a~~i~~FaeqL~  183 (217)
                      +-+.|..+|.+|-
T Consensus       136 ~~~~i~~l~~~Lg  148 (163)
T d1yema_         136 AKEKIWEVAKMLG  148 (163)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcC
Confidence            6778889998874

>d2acaa1 d.63.1.2 (A:8-181) Putative adenylate cyclase VP1760 {Vibrio parahaemolyticus [TaxId: 670]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Putative adenylate cyclase VP1760
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.15  E-value=0.066  Score=40.82  Aligned_cols=140  Identities=9%  Similarity=0.115  Sum_probs=90.1

Q ss_pred             cChHHHHHHhhhhccCC-CccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeee
Q 027883           12 QHVEALEILLQGICGVH-RDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSM   89 (217)
Q Consensus        12 ~~~~~L~~RL~GLcd~~-~e~f~~hE~v~k~~~~-~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~   89 (217)
                      .+.+.+.++|.-+.... .......-+.|-++.. .......||+|..-.  +..+++.+-| |.           ++..
T Consensus        13 ~d~~~~~~~l~~~~~~~~~~~~~q~d~Yfd~p~~~l~~~~~~lR~R~~~~--~~~~tl~~k~-~~-----------~~~e   78 (174)
T d2acaa1          13 KNHDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQP--AGIKLWIVKG-PE-----------ADRC   78 (174)
T ss_dssp             SCHHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEET--TTEEEEEEEC-SS-----------TTBE
T ss_pred             CCHHHHHHHHHHcCCccccceEEEEEEEEECCCCchhhCceeeEEeecCC--CcEEEEEEcc-cC-----------CCce
Confidence            35788899998776532 2223334455654321 123568999997622  3456666643 22           1235


Q ss_pred             EEeeeec--cHHHHHHHhCceeeEEEEEEeeEEEEeeCceEEEEEEEEeeecccCCCCCCCcCCCceeEEEEE-cCCCCC
Q 027883           90 VESKVSK--NALRLFNALGYKLDHELLRVGFAFHFQRGAQITVTVSSVNKMLKLHATDEAVPVTPGIQLVEVT-APASSE  166 (217)
Q Consensus        90 id~~~S~--~v~~Fl~~LGfr~d~E~~~~G~~f~~~~~g~ikI~Vs~v~k~~~~g~~d~~~~~~~~s~LVEvS-ap~~~e  166 (217)
                      .++.+++  ++..+|..|||+..+++-+.-..|++   +.++|.+-.+..+              | ..+||= ....+.
T Consensus        79 ~e~~v~~~~~~~~il~~lg~~~~~~~~k~R~~~~~---~~~~v~lD~v~~l--------------g-~f~EiE~~~~~~~  140 (174)
T d2acaa1          79 EATNITKLDSAQSMLENMGYEVIQCSKKIRSIFFV---GEFHITLDFLDGF--------------G-HFAEFAIMTDDET  140 (174)
T ss_dssp             EEEEBSCHHHHHHHHHHTTCEEEEEEEEEEEEEEE---TTEEEEEEEETTT--------------E-EEEEEEEEESCSG
T ss_pred             EEEecCCHHHHHHHHHhCCCceEEEEEEEEEEEEE---CCEEEEEEEecCC--------------C-cEEEEEEEeCCcc
Confidence            5666665  88889999999999999999999997   6678888765221              2 456773 222244


Q ss_pred             ChHHHHHHHHHHHhhhc
Q 027883          167 NYTEVASAVSSFCEYLA  183 (217)
Q Consensus       167 ~~~~~a~~i~~FaeqL~  183 (217)
                      .+.++...|..||++|-
T Consensus       141 ~~e~~~~~i~~~~~~LG  157 (174)
T d2acaa1         141 ALARYRERLVALAQQFH  157 (174)
T ss_dssp             GGTTHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHcC
Confidence            45566778889998874

>d2jmua1 d.63.1.2 (A:2-224) Thiamine-triphosphatase (ThTPase) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: CYTH-like phosphatases
superfamily: CYTH-like phosphatases
family: CYTH domain
domain: Thiamine-triphosphatase (ThTPase)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.44  E-value=1.1  Score=35.13  Aligned_cols=142  Identities=13%  Similarity=0.073  Sum_probs=82.4

Q ss_pred             HHHHHhhhhccCCCccceEEeEEEeeCCC-CCCCCeEEEEeeeCCCCCCceEEEEecccccCCCccCcceeeeeeEE---
Q 027883           16 ALEILLQGICGVHRDRLRVHEICLKNNPN-LGNVASEVRLLCDLEQPEPTWTVKHLGGAMRGAGAEQISVLVRSMVE---   91 (217)
Q Consensus        16 ~L~~RL~GLcd~~~e~f~~hE~v~k~~~~-~g~~~~~lRlrr~L~~p~~~W~lry~G~pe~g~g~~~~~a~VR~~id---   91 (217)
                      ....+|+.+-.....+...|-+-|-++.. .......||+|.     +..|++.+-+.+-...     ....|+...   
T Consensus        16 ~~~~~l~~~~~~~~~~~~l~d~YfDtpd~~L~~~~~aLRiR~-----~~~~~lt~k~~~~~~~-----~~~~~~E~~~~~   85 (223)
T d2jmua1          16 DTEERLQELGATLEHRVTFRDTYYDTSELSLMLSDHWLRQRE-----GSGWELKCPGVTGVSG-----PHNEYVEVTSEA   85 (223)
T ss_dssp             THHHHHHHHTCEEEEEEEEEEEEEECTTSHHHHTTCEEEEET-----TTEEEEEECSCSSCCS-----SCCSCEEECCHH
T ss_pred             HHHHHHHHcCCcccccEEEEEEEEcCCChhHHhCCceEEeEe-----CCCceEEEecCCCCCc-----ceeeeccccccc
Confidence            34566665533323444555555643211 123578899773     3579999876664321     222333333   


Q ss_pred             -----------eeee--ccHHHHHHHhCceeeEEEEEEeeEEEEee------CceEEEEEEEEeeecccCCCCCCCcCCC
Q 027883           92 -----------SKVS--KNALRLFNALGYKLDHELLRVGFAFHFQR------GAQITVTVSSVNKMLKLHATDEAVPVTP  152 (217)
Q Consensus        92 -----------~~~S--~~v~~Fl~~LGfr~d~E~~~~G~~f~~~~------~g~ikI~Vs~v~k~~~~g~~d~~~~~~~  152 (217)
                                 ....  ..+...+..+||+.-.++-+.=..|++..      ...+.|++-++..              .
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~k~R~~~~l~~~~~~~~~~~~~v~lD~~~~--------------~  151 (223)
T d2jmua1          86 AIVAQLFELLGSGEQKPAGVAAVLGSLKLQEVASFITTRSSWKLALSGAHGQEPQLTIDLDSADF--------------G  151 (223)
T ss_dssp             HHHHHHHHHHTCCSCCCSSHHHHHHHHTCEEEEEEEEEEEEEEEECCSTTSCCCEEEEEEEEETT--------------T
T ss_pred             cchhhhhhhcCccccchhHHHHHHhhcCCeEEEEEEEEEEEEEeccCCcccccceEEEEEEcccC--------------C
Confidence                       2222  36778999999999999887767777621      2356665543311              2


Q ss_pred             ceeEEEEE-cCCCCCChHHHHHHHHHHHhhh
Q 027883          153 GIQLVEVT-APASSENYTEVASAVSSFCEYL  182 (217)
Q Consensus       153 ~s~LVEvS-ap~~~e~~~~~a~~i~~FaeqL  182 (217)
                      + .++||= ....++.+.++-+.|..|+++|
T Consensus       152 ~-~~~EiE~~~~~~~~~~~a~~~i~~~~~~l  181 (223)
T d2jmua1         152 Y-AVGEVEAMVHEKAEVPAALEKIITVSSML  181 (223)
T ss_dssp             E-EEEEEEEEESCGGGHHHHHHHHHHHHHHH
T ss_pred             c-eEEEEEEEeCCcchHHHHHHHHHHHHHHc
Confidence            2 467774 2333455667778888899887