Citrus Sinensis ID: 027884

Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------
MKTLNVANSGICCVAFRALDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTKRSNDGQVKSNPKLADESFDDEEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAENIKQYKCPSCSMKRGRQ
ccccccccccEEEEEEEccccccEEEcccccccEEECccccccccccccccccccccccccccccccEEEHHcccHHHHHHHHHHHHcccccHHHHHcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccHHHHccccCECccccccccccc
****NVANSGICCVAFRALDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVFEVV*************************************************ETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAENIKQYKCPS*S******
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHHHHHHxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
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MKTLNVANSGICCVAFRALDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRKDWLSLVAVHTDSWLLSVAFYLGARLNRNERKRLFSLINDQPTVFEVVTERKPIKDKPSVDSSSKSRGSTKRSNDGQVKSNPKLADESFDDEEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAENIKQYKCPSCSMKRGRQ

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
PHD finger protein ALFIN-LIKE 1 Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.confidentQ9FFF5
PHD finger protein ALFIN-LIKE 2 Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.probableB8B8I3
PHD finger protein ALFIN-LIKE 3 Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.probableB8AMA8

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 1WE9, chain A
Confidence level:very confident
Coverage over the Query: 158-217
View the alignment between query and template
View the model in PyMOL