Citrus Sinensis ID: 027950

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MLDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKAWPVPLIFVHYVILLRQAGSFNQELEYVNGIFVQT
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccccccHHHHHHHHHccHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccHHHHHHccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHcHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEc
Coil and Loop (DISEMBL)
mldrrltrqmsrqssfdprrnnmrfsfgrqssldpirrspvqdeltvpenLDSTMQLLFMACSGDVKGVEDLLnegidvnsidldgrtaLHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKArgakvpktkrtpmtvanprevpeyelnplELQVRKadgitkawpvpLIFVHYVILLRQagsfnqeleyvngifvqt
Flexible Loop (DISEMBL)
mldrrltrqmsrqssfdprrnnmrfsfgrqssldpirrspVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKkanidardrwgstaaadakyygnVEVYNILkargakvpktkrtpmtvanprevpeyelNPLELQVRKADGITKAWPVPLIFVHYVILLRQAGSFNQELEYVNGIFVQT
Low Complexity Region (SEG)
MLDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKAWPVPLIFVHYVILLRQAGSFNQELEYVNGIFVQT
Disordered region (IsUnstruct)
****************************************************STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA********************YELNPLELQVRKADGITKAWPVPLIFVHYVILLRQAGSFNQELEYVNGIFV**
Disordered Region (DISOPRED)
MLDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKAWPVPLIFVHYVILLRQAGSFNQELEYVNGIFVQ*
Disordered Region (DISEMBL)
****************DPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKAWPVPLIFVHYVILLRQAGSFNQELEYVNGIFVQT
Disordered Region (DISPRO)
*****LTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKAWPVPLIFVHYVILLRQAGSFNQELEYVNGIFVQT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITKAWPVPLIFVHYVILLRQAGSFNQELEYVNGIFVQT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
D3Z7P3	674	Glutaminase kidney isofor	yes	no	0.421	0.135	0.423	3e-13
P13264	674	Glutaminase kidney isofor	yes	no	0.421	0.135	0.423	3e-13
O94925	669	Glutaminase kidney isofor	yes	no	0.421	0.136	0.423	4e-13
Q9UI32	602	Glutaminase liver isoform	no	no	0.402	0.144	0.431	1e-12
Q571F8	602	Glutaminase liver isoform	no	no	0.402	0.144	0.420	5e-12
P28492	602	Glutaminase liver isoform	no	no	0.402	0.144	0.409	9e-12
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.430	0.047	0.404	1e-11
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.393	0.019	0.409	3e-11
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.449	0.024	0.367	4e-11
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.449	0.024	0.367	4e-11

>sp|D3Z7P3|GLSK_MOUSE Glutaminase kidney isoform, mitochondrial OS=Mus musculus GN=Gls PE=1 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 49  ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL-S 107
           + + S + LLF A +GDV  +       +D+   D D RTALH+AA EGHVEVVK LL +
Sbjct: 554 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEA 613

Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILK 139
            K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct: 614 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 645

Catalyzes the first reaction in the primary pathway for the renal catabolism of glutamine. Plays a role in maintaining acid-base homeostasis. Regulates the levels of the neurotransmitter glutamate in the brain.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 2

>sp|P13264|GLSK_RAT Glutaminase kidney isoform, mitochondrial OS=Rattus norvegicus GN=Gls PE=1 SV=2

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 49  ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL-S 107
           + + S + LLF A +GDV  +       +D+   D D RTALH+AA EGHVEVVK LL +
Sbjct: 554 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEA 613

Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILK 139
            K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct: 614 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 645

Catalyzes the first reaction in the primary pathway for the renal catabolism of glutamine. Plays a role in maintaining acid-base homeostasis. Regulates the levels of the neurotransmitter glutamate in the brain.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|O94925|GLSK_HUMAN Glutaminase kidney isoform, mitochondrial OS=Homo sapiens GN=GLS PE=1 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 49  ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL-S 107
           + + S + LLF A +GDV  +       +D+   D D RTALH+AA EGHVEVVK LL +
Sbjct: 549 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEA 608

Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILK 139
            K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct: 609 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 640

Catalyzes the first reaction in the primary pathway for the renal catabolism of glutamine. Plays a role in maintaining acid-base homeostasis. Regulates the levels of the neurotransmitter glutamate in the brain. Isoform 2 lacks catalytic activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q9UI32|GLSL_HUMAN Glutaminase liver isoform, mitochondrial OS=Homo sapiens GN=GLS2 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 53  STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL-SKKAN 111
           + + LLF A SGDV  +       +D+   D D RTALH+AA EGH+EVVK L+ + K N
Sbjct: 486 TVVNLLFAAYSGDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHIEVVKFLIEACKVN 545

Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
             A+DRWG+    DA  + ++EV  +L+
Sbjct: 546 PFAKDRWGNIPLDDAVQFNHLEVVKLLQ 573

Plays an important role in the regulation of glutamine catabolism. Promotes mitochondrial respiration and increases ATP generation in cells by catalyzing the synthesis of glutamate and alpha-ketoglutarate. Increases cellular anti-oxidant function via NADH and glutathione production. May play a role in preventing tumor proliferation.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|Q571F8|GLSL_MOUSE Glutaminase liver isoform, mitochondrial OS=Mus musculus GN=Gls2 PE=2 SV=2

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 53  STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL-SKKAN 111
           + + LLF A SGDV  +       +D+   D D RTALH+AA EGH+EVVK L+ + K N
Sbjct: 486 TVVNLLFAAYSGDVSALRRFALSAMDMEQKDYDSRTALHVAAAEGHIEVVKFLIEACKVN 545

Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
              +DRWG+    DA  + ++EV  +L+
Sbjct: 546 PFVKDRWGNIPLDDAVQFNHLEVVKLLQ 573

Plays an important role in the regulation of glutamine catabolism. Promotes mitochondrial respiration and increases ATP generation in cells by catalyzing the synthesis of glutamate and alpha-ketoglutarate. Increases cellular anti-oxidant function via NADH and glutathione production.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|P28492|GLSL_RAT Glutaminase liver isoform, mitochondrial OS=Rattus norvegicus GN=Gls2 PE=2 SV=3

 Score = 70.5 bits (171), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 1/88 (1%)

Query: 53  STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL-SKKAN 111
           + + LLF A SGDV  +       +D+   D D RTALH+AA EGH++VVK L+ + K N
Sbjct: 486 TVVNLLFAAYSGDVSALRRFALSAVDMEQKDYDSRTALHVAAAEGHIDVVKFLIEACKVN 545

Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
              +DRWG+    DA  + ++EV  +L+
Sbjct: 546 PFVKDRWGNIPLDDAVQFNHLEVVKLLQ 573

Plays an important role in the regulation of glutamine catabolism. Promotes mitochondrial respiration and increases ATP generation in cells by catalyzing the synthesis of glutamate and alpha-ketoglutarate. Increases cellular anti-oxidant function via NADH and glutathione production.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 2

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 54/94 (57%)

Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D+    L  A +G ++   D +  G+DVN  + +G  ALH+A+ EGHVEVV  LL ++AN
Sbjct: 23  DANASYLRAARAGHLEKALDYIKNGVDVNICNQNGLNALHLASKEGHVEVVSELLQREAN 82

Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           +DA  + G+TA   A   G  EV  +L   GA V
Sbjct: 83  VDAATKKGNTALHIASLAGQAEVVKVLVTNGANV 116

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%)

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 117
           L  A +G ++   D +  G+D+N  + +G  ALH+A+ EGHVEVV  LL ++AN+DA  +
Sbjct: 46  LRAARAGHLEKALDYIKNGVDINICNQNGLNALHLASKEGHVEVVSELLQREANVDAATK 105

Query: 118 WGSTAAADAKYYGNVEVYNILKARGAKV 145
            G+TA   A   G  EV  +L   GA V
Sbjct: 106 KGNTALHIASLAGQAEVVKVLVTNGANV 133

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 57/98 (58%)

Query: 48  PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
           P+  DS    L  A +G++  V + L  GID+N+ + +G  ALH+AA EGHV +V+ LL 
Sbjct: 26  PKKSDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLG 85

Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           + +++D+  + G+TA   A   G  EV  +L   GA +
Sbjct: 86  RGSSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANI 123

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 57/98 (58%)

Query: 48  PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
           P+  DS    L  A +G++  V + L  GID+N+ + +G  ALH+AA EGHV +V+ LL 
Sbjct: 26  PKKSDSNASFLRAARAGNLDKVVEYLKGGIDINTCNQNGLNALHLAAKEGHVGLVQELLG 85

Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           + +++D+  + G+TA   A   G  EV  +L   GA +
Sbjct: 86  RGSSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANI 123

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
147802196	495	hypothetical protein VITISV_010336 [Viti	0.837	0.365	0.861	7e-88
225434181	472	PREDICTED: dual specificity protein kina	0.837	0.383	0.861	8e-88
255577895	482	ankyrin-kinase, putative [Ricinus commun	0.837	0.375	0.842	1e-86
357519311	458	Dual specificity tyrosine-phosphorylatio	0.828	0.390	0.857	1e-86
356512588	474	PREDICTED: serine/threonine-protein kina	0.837	0.381	0.841	3e-86
18700701	477	ankyrin-kinase [Medicago truncatula]	0.828	0.375	0.852	3e-86
356525359	475	PREDICTED: serine/threonine-protein kina	0.837	0.381	0.836	9e-86
449438147	473	PREDICTED: serine/threonine-protein kina	0.837	0.382	0.829	5e-85
449520086	473	PREDICTED: serine/threonine-protein kina	0.837	0.382	0.829	2e-84
42569534	476	Integrin-linked protein kinase-like prot	0.837	0.380	0.826	8e-84

>gi|147802196|emb|CAN63815.1| hypothetical protein VITISV_010336 [Vitis vinifera]

 Score =  328 bits (842), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 156/181 (86%), Positives = 167/181 (92%)

Query: 2   LDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMA 61
           L R L+RQ SRQSS DPRR N+RFS GRQSSLDPIRRSPV +EL+VPENLDSTMQ+LFMA
Sbjct: 20  LLRTLSRQFSRQSSLDPRRTNLRFSLGRQSSLDPIRRSPVNEELSVPENLDSTMQMLFMA 79

Query: 62  CSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
           C GDVKGVEDLLNEG DVNSIDLDGRTALHIAACEG +EVVKLLLS+KANIDARDRWGST
Sbjct: 80  CRGDVKGVEDLLNEGTDVNSIDLDGRTALHIAACEGQIEVVKLLLSRKANIDARDRWGST 139

Query: 122 AAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITK 181
           AAADAKYYGNVE+YNILKARGAK PK ++TPM VANPREVPEYELNPLELQVRK+DGITK
Sbjct: 140 AAADAKYYGNVEIYNILKARGAKTPKIRKTPMAVANPREVPEYELNPLELQVRKSDGITK 199

Query: 182 A 182
            
Sbjct: 200 G 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434181|ref|XP_002279175.1| PREDICTED: dual specificity protein kinase shkC-like [Vitis vinifera]

 Score =  328 bits (842), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 156/181 (86%), Positives = 167/181 (92%)

Query: 2   LDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMA 61
           L R L+RQ SRQSS DPRR N+RFS GRQSSLDPIRRSPV +EL+VPENLDSTMQ+LFMA
Sbjct: 20  LLRTLSRQFSRQSSLDPRRTNLRFSLGRQSSLDPIRRSPVNEELSVPENLDSTMQMLFMA 79

Query: 62  CSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
           C GDVKGVEDLLNEG DVNSIDLDGRTALHIAACEG +EVVKLLLS+KANIDARDRWGST
Sbjct: 80  CRGDVKGVEDLLNEGTDVNSIDLDGRTALHIAACEGQIEVVKLLLSRKANIDARDRWGST 139

Query: 122 AAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITK 181
           AAADAKYYGNVE+YNILKARGAK PK ++TPM VANPREVPEYELNPLELQVRK+DGITK
Sbjct: 140 AAADAKYYGNVEIYNILKARGAKTPKIRKTPMAVANPREVPEYELNPLELQVRKSDGITK 199

Query: 182 A 182
            
Sbjct: 200 G 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577895|ref|XP_002529820.1| ankyrin-kinase, putative [Ricinus communis] gi|223530697|gb|EEF32569.1| ankyrin-kinase, putative [Ricinus communis]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 155/184 (84%), Positives = 169/184 (91%), Gaps = 3/184 (1%)

Query: 2   LDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPV---QDELTVPENLDSTMQLL 58
           L R  +RQ SRQ+S DPRR+N+RFSFGRQSSLDPIRRSP    +++  VPENLDSTMQLL
Sbjct: 21  LRRTFSRQFSRQTSLDPRRHNLRFSFGRQSSLDPIRRSPGHHDEEQFAVPENLDSTMQLL 80

Query: 59  FMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW 118
           FMAC GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV+LLL++KANIDARDRW
Sbjct: 81  FMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVRLLLTRKANIDARDRW 140

Query: 119 GSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADG 178
           GSTA ADAKYYGNVEVYNILKARGAK PKT++TPMTVANPREVPEYELNPLELQVRK+DG
Sbjct: 141 GSTACADAKYYGNVEVYNILKARGAKAPKTRKTPMTVANPREVPEYELNPLELQVRKSDG 200

Query: 179 ITKA 182
           I+K 
Sbjct: 201 ISKG 204

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519311|ref|XP_003629944.1| Dual specificity tyrosine-phosphorylation-regulated kinase 1A [Medicago truncatula] gi|355523966|gb|AET04420.1| Dual specificity tyrosine-phosphorylation-regulated kinase 1A [Medicago truncatula]

 Score =  324 bits (831), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 157/183 (85%), Positives = 169/183 (92%), Gaps = 4/183 (2%)

Query: 2   LDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDE----LTVPENLDSTMQL 57
           L + L+RQ +RQ+S DPRRNN+RFSFGRQSSLDPIRRSP  DE    LTVPENLDSTMQL
Sbjct: 21  LRKTLSRQFTRQASLDPRRNNLRFSFGRQSSLDPIRRSPGDDEDQAELTVPENLDSTMQL 80

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 117
           LFMAC GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHV+V KLLLS+KAN+DARDR
Sbjct: 81  LFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVDVAKLLLSRKANLDARDR 140

Query: 118 WGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKAD 177
           WGSTAAADAKYYGN EVY ILKARGAKVPKT++TPMTVANPREVPEYELNPLELQVRK+D
Sbjct: 141 WGSTAAADAKYYGNTEVYYILKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSD 200

Query: 178 GIT 180
           GI+
Sbjct: 201 GIS 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512588|ref|XP_003525000.1| PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 154/183 (84%), Positives = 168/183 (91%), Gaps = 2/183 (1%)

Query: 2   LDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQD--ELTVPENLDSTMQLLF 59
           L R L+RQ +RQ+S DPRRNN RFSFGRQSSLDPIRRSP     ELTVPENLDSTMQLLF
Sbjct: 21  LRRNLSRQFTRQASLDPRRNNQRFSFGRQSSLDPIRRSPCSGNAELTVPENLDSTMQLLF 80

Query: 60  MACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 119
           MAC GDVKGVEDLLNEGIDVNSIDLDGRTALH+AACEGHVEV +LLLS+KAN+DARDRWG
Sbjct: 81  MACRGDVKGVEDLLNEGIDVNSIDLDGRTALHVAACEGHVEVARLLLSRKANLDARDRWG 140

Query: 120 STAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGI 179
           STAAADAKYYGN E+Y +LKARGAKVPKT++TPMTVANPREVPEYELNP+ELQVRK+DGI
Sbjct: 141 STAAADAKYYGNTEIYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPVELQVRKSDGI 200

Query: 180 TKA 182
           +K 
Sbjct: 201 SKG 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18700701|gb|AAL78674.1|AF458699_1 ankyrin-kinase [Medicago truncatula]

 Score =  323 bits (828), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 156/183 (85%), Positives = 169/183 (92%), Gaps = 4/183 (2%)

Query: 2   LDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDE----LTVPENLDSTMQL 57
           L + L+RQ +RQ+S DPRRNN+RFSFGRQSSLDPIRRSP  DE    LTVPENLDSTMQL
Sbjct: 21  LRKTLSRQFTRQASLDPRRNNLRFSFGRQSSLDPIRRSPGDDEDQAELTVPENLDSTMQL 80

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 117
           LFMAC GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHV+V KLLLS+KAN+DARDR
Sbjct: 81  LFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVDVAKLLLSRKANLDARDR 140

Query: 118 WGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKAD 177
           WGSTAAADAKYYGN EVY +LKARGAKVPKT++TPMTVANPREVPEYELNPLELQVRK+D
Sbjct: 141 WGSTAAADAKYYGNTEVYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSD 200

Query: 178 GIT 180
           GI+
Sbjct: 201 GIS 203

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356525359|ref|XP_003531292.1| PREDICTED: serine/threonine-protein kinase CTR1-like [Glycine max]

 Score =  322 bits (824), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 153/183 (83%), Positives = 168/183 (91%), Gaps = 2/183 (1%)

Query: 2   LDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSP--VQDELTVPENLDSTMQLLF 59
           L R L+RQ +RQ+S DPRRNN RFS GRQSSLDPIRRSP  VQ ELTVPENLDSTMQLLF
Sbjct: 21  LRRNLSRQFTRQASLDPRRNNQRFSIGRQSSLDPIRRSPGPVQPELTVPENLDSTMQLLF 80

Query: 60  MACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 119
           MAC GD KGV+DLLNEGIDVNSIDLDGRTALH+AACEGHVEV +LLL++KAN+DARDRWG
Sbjct: 81  MACRGDAKGVDDLLNEGIDVNSIDLDGRTALHVAACEGHVEVARLLLTRKANLDARDRWG 140

Query: 120 STAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGI 179
           STAAADAKYYGN E+Y +LKARGAKVPKT++TPMTVANPREVPEYELNPLELQVRK+DGI
Sbjct: 141 STAAADAKYYGNTEIYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSDGI 200

Query: 180 TKA 182
           +K 
Sbjct: 201 SKG 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438147|ref|XP_004136851.1| PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cucumis sativus]

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 151/182 (82%), Positives = 168/182 (92%), Gaps = 1/182 (0%)

Query: 2   LDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQD-ELTVPENLDSTMQLLFM 60
           L R L+RQ +RQSS DPRRNN+RFSFGRQSSLDPIRR P +D EL++P+NLDSTMQLLFM
Sbjct: 21  LRRTLSRQFTRQSSLDPRRNNLRFSFGRQSSLDPIRRCPDEDNELSIPDNLDSTMQLLFM 80

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
           AC GDV+GVEDLLN+G DVNSIDLDGRTALHIAACEGH  VVKLLLS+KANIDARDRWGS
Sbjct: 81  ACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAAVVKLLLSRKANIDARDRWGS 140

Query: 121 TAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGIT 180
           TAAADAKYYGN E+YNILKARGAKVPK ++TPMTVANPREVPEYELNPLELQ+R++DGI+
Sbjct: 141 TAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGIS 200

Query: 181 KA 182
           K 
Sbjct: 201 KG 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520086|ref|XP_004167065.1| PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cucumis sativus]

 Score =  317 bits (813), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 151/182 (82%), Positives = 168/182 (92%), Gaps = 1/182 (0%)

Query: 2   LDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQD-ELTVPENLDSTMQLLFM 60
           L R L+RQ +RQSS DPRRNN+RFSFGRQSSLDPIRR P +D EL++P+NLDSTMQLLFM
Sbjct: 21  LRRTLSRQFTRQSSPDPRRNNLRFSFGRQSSLDPIRRCPDEDNELSIPDNLDSTMQLLFM 80

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
           AC GDV+GVEDLLN+G DVNSIDLDGRTALHIAACEGH  VVKLLLS+KANIDARDRWGS
Sbjct: 81  ACRGDVRGVEDLLNDGTDVNSIDLDGRTALHIAACEGHAAVVKLLLSRKANIDARDRWGS 140

Query: 121 TAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGIT 180
           TAAADAKYYGN E+YNILKARGAKVPK ++TPMTVANPREVPEYELNPLELQ+R++DGI+
Sbjct: 141 TAAADAKYYGNTEIYNILKARGAKVPKFRKTPMTVANPREVPEYELNPLELQIRRSDGIS 200

Query: 181 KA 182
           K 
Sbjct: 201 KG 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42569534|ref|NP_180739.2| Integrin-linked protein kinase-like protein [Arabidopsis thaliana] gi|95147274|gb|ABF57272.1| At2g31800 [Arabidopsis thaliana] gi|330253491|gb|AEC08585.1| Integrin-linked protein kinase-like protein [Arabidopsis thaliana]

 Score =  315 bits (807), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 152/184 (82%), Positives = 169/184 (91%), Gaps = 3/184 (1%)

Query: 2   LDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQD---ELTVPENLDSTMQLL 58
           L R L+RQ +RQ+S DPRRNNMRFSFGRQSSLDPIRRSP      +L VP+NLD+TMQLL
Sbjct: 21  LRRTLSRQFTRQASHDPRRNNMRFSFGRQSSLDPIRRSPDGSNGPQLAVPDNLDATMQLL 80

Query: 59  FMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW 118
           F+AC GDV+GV+DLL+EGIDVNSIDLDGRTALHIAACEGHV+VVKLLL++KANIDARDRW
Sbjct: 81  FVACRGDVEGVQDLLDEGIDVNSIDLDGRTALHIAACEGHVDVVKLLLTRKANIDARDRW 140

Query: 119 GSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADG 178
           GSTAAADAKYYGN++V+NILKARGAKVPKTKRTPM VANPREVPEYELNP ELQVRKADG
Sbjct: 141 GSTAAADAKYYGNMDVFNILKARGAKVPKTKRTPMVVANPREVPEYELNPQELQVRKADG 200

Query: 179 ITKA 182
           I+K 
Sbjct: 201 ISKG 204

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2045258	476	AT2G31800 [Arabidopsis thalian	0.833	0.378	0.830	1.3e-77
TAIR|locus:2080517	477	AT3G59830 [Arabidopsis thalian	0.824	0.373	0.807	3.9e-76
TAIR|locus:2044034	479	AT2G43850 [Arabidopsis thalian	0.824	0.371	0.804	1.7e-75
TAIR|locus:2117129	459	AT4G18950 [Arabidopsis thalian	0.717	0.337	0.478	2.8e-34
TAIR|locus:2098999	471	AT3G58760 [Arabidopsis thalian	0.712	0.326	0.455	3.3e-31
UNIPROTKB|B7Z509	174	GLS "Glutaminase kidney isofor	0.421	0.522	0.423	1.1e-14
UNIPROTKB|F1NHF5	540	GLS "Uncharacterized protein"	0.421	0.168	0.423	4.6e-14
UNIPROTKB|F1LR09	567	Gls "Glutaminase kidney isofor	0.421	0.160	0.423	1.1e-13
UNIPROTKB|O94925	669	GLS "Glutaminase kidney isofor	0.421	0.136	0.423	1.4e-13
MGI|MGI:95752	674	Gls "glutaminase" [Mus musculu	0.421	0.135	0.423	1.4e-13

TAIR|locus:2045258 AT2G31800 [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 152/183 (83%), Positives = 169/183 (92%)

Query:     2 LDRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQD---ELTVPENLDSTMQLL 58
             L R L+RQ +RQ+S DPRRNNMRFSFGRQSSLDPIRRSP      +L VP+NLD+TMQLL
Sbjct:    21 LRRTLSRQFTRQASHDPRRNNMRFSFGRQSSLDPIRRSPDGSNGPQLAVPDNLDATMQLL 80

Query:    59 FMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW 118
             F+AC GDV+GV+DLL+EGIDVNSIDLDGRTALHIAACEGHV+VVKLLL++KANIDARDRW
Sbjct:    81 FVACRGDVEGVQDLLDEGIDVNSIDLDGRTALHIAACEGHVDVVKLLLTRKANIDARDRW 140

Query:   119 GSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADG 178
             GSTAAADAKYYGN++V+NILKARGAKVPKTKRTPM VANPREVPEYELNP ELQVRKADG
Sbjct:   141 GSTAAADAKYYGNMDVFNILKARGAKVPKTKRTPMVVANPREVPEYELNPQELQVRKADG 200

Query:   179 ITK 181
             I+K
Sbjct:   201 ISK 203

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0046777 "protein autophosphorylation" evidence=IDA

TAIR|locus:2080517 AT3G59830 [Arabidopsis thaliana (taxid:3702)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 147/182 (80%), Positives = 164/182 (90%)

Query:     4 RRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSP----VQDELTVPENLDSTMQLLF 59
             R L+RQ +RQ+S DPRRNNMRFSFGRQSSLDPIRRSP     +  ++VPENLDSTMQLLF
Sbjct:    23 RTLSRQFTRQNSLDPRRNNMRFSFGRQSSLDPIRRSPESLSCEPHMSVPENLDSTMQLLF 82

Query:    60 MACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 119
             MA  GDV GVE+LLNEGIDVNSIDLDGRTALHIA+CEGH +VVK+LLS++ANIDARDRWG
Sbjct:    83 MASKGDVNGVEELLNEGIDVNSIDLDGRTALHIASCEGHYDVVKVLLSRRANIDARDRWG 142

Query:   120 STAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGI 179
             STAA DAKYYGNVEVYN+LKARGAK PKT++TPMTV NP+EVPEYELNPLELQVRK DGI
Sbjct:   143 STAAVDAKYYGNVEVYNLLKARGAKAPKTRKTPMTVGNPKEVPEYELNPLELQVRKVDGI 202

Query:   180 TK 181
             +K
Sbjct:   203 SK 204

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2044034 AT2G43850 [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 148/184 (80%), Positives = 168/184 (91%)

Query:     4 RRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSP----VQDE--LTVPENLDSTMQL 57
             R L+RQ +RQSS DPRR NMRFSFGRQSSLDPIRRSP      DE  ++VPENLDSTMQL
Sbjct:    23 RTLSRQFTRQSSLDPRRTNMRFSFGRQSSLDPIRRSPDSSKSDDEPHMSVPENLDSTMQL 82

Query:    58 LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 117
             LFMA  GDV+G+E+LL+EGIDVNSIDLDGRTALHIAACEGH+ VVK LLS++ANIDARDR
Sbjct:    83 LFMASKGDVRGIEELLDEGIDVNSIDLDGRTALHIAACEGHLGVVKALLSRRANIDARDR 142

Query:   118 WGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKAD 177
             WGSTAAADAKYYGN++VYN+LKARGAKVPKT++TPMTV+NPREVPEYELNPLE+QVRK+D
Sbjct:   143 WGSTAAADAKYYGNLDVYNLLKARGAKVPKTRKTPMTVSNPREVPEYELNPLEVQVRKSD 202

Query:   178 GITK 181
             GI+K
Sbjct:   203 GISK 206

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0046777 "protein autophosphorylation" evidence=IDA

TAIR|locus:2117129 AT4G18950 [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 78/163 (47%), Positives = 108/163 (66%)

Query:    24 RFSFGRQSSLDP--IRRSPVQDELTV---PENLDSTMQLLFMACSGDVKGVEDLLNEGID 78
             RF+ GRQSS+ P  I    V  E  V    E +D  ++L+++A  GD++G+++L++ GID
Sbjct:     9 RFTIGRQSSMAPEKIPEPSVHSEEEVFEDGEEIDGGVRLMYLANEGDIEGIKELIDSGID 68

Query:    79 VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 138
              N  D+D RTALH+AAC+G  +VV+LLL +KA +D +DRWGST  ADA +Y N++V  IL
Sbjct:    69 ANYRDIDDRTALHVAACQGLKDVVELLLDRKAEVDPKDRWGSTPFADAIFYKNIDVIKIL 128

Query:   139 KARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITK 181
             +  GAK P     PM V   REVPEYE+NP EL   ++  ITK
Sbjct:   129 EIHGAKHPMA---PMHVKTAREVPEYEINPSELDFTQSKEITK 168

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2098999 AT3G58760 [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 77/169 (45%), Positives = 107/169 (63%)

Query:    24 RFSFGRQSSLDPIRRSPVQDELTVPEN--L---------DSTMQLLFMACSGDVKGVEDL 72
             RF  GRQSSL P  R+P+ D LT  E+  L         D T++L+++A  GD+ G+  +
Sbjct:    10 RFKLGRQSSLAPESRTPI-DTLTEDEDDDLAAAATAGIGDPTIRLMYLANEGDIDGINKM 68

Query:    73 LNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV 132
             L+ G +V+  D+D RTALH+AAC+G  +VV+LLLS+ A +D +DRWGST  ADA YY N 
Sbjct:    69 LDSGTNVDYRDIDARTALHVAACQGRTDVVELLLSRGAKVDTKDRWGSTPLADAVYYKNH 128

Query:   133 EVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRKADGITK 181
             +V  +L+  GAK P     PM V   +EVPEYE++P EL    +  I+K
Sbjct:   129 DVIKLLEKHGAK-PTI--APMHVLTDKEVPEYEIHPTELDFSNSVKISK 174

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

UNIPROTKB|B7Z509 GLS "Glutaminase kidney isoform, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query:    49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
             + + S + LLF A +GDV  +       +D+   D D RTALH+AA EGHVEVVK LL  
Sbjct:    54 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEA 113

Query:   109 -KANIDARDRWGSTAAADAKYYGNVEVYNILK 139
              K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct:   114 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 145

GO:0002087 "regulation of respiratory gaseous exchange by neurological system process" evidence=IEA

GO:0004359 "glutaminase activity" evidence=IEA

GO:0006537 "glutamate biosynthetic process" evidence=IEA

GO:0006543 "glutamine catabolic process" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0007610 "behavior" evidence=IEA

UNIPROTKB|F1NHF5 GLS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 4.6e-14, P = 4.6e-14
 Identities = 39/92 (42%), Positives = 57/92 (61%)

Query:    49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
             + + S + LLF A +GDV  +      G+D+   D D RTALH+AA EGHV+VVK LL  
Sbjct:   420 QRVKSVINLLFAAYTGDVSALRRFALSGMDMEQRDYDSRTALHVAAAEGHVDVVKFLLEA 479

Query:   109 -KANIDARDRWGSTAAADAKYYGNVEVYNILK 139
              K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct:   480 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 511

GO:0004359 "glutaminase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

UNIPROTKB|F1LR09 Gls "Glutaminase kidney isoform, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 187 (70.9 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query:    49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
             + + S + LLF A +GDV  +       +D+   D D RTALH+AA EGHVEVVK LL  
Sbjct:   447 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEA 506

Query:   109 -KANIDARDRWGSTAAADAKYYGNVEVYNILK 139
              K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct:   507 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 538

GO:0004359 "glutaminase activity" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

UNIPROTKB|O94925 GLS "Glutaminase kidney isoform, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query:    49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
             + + S + LLF A +GDV  +       +D+   D D RTALH+AA EGHVEVVK LL  
Sbjct:   549 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEA 608

Query:   109 -KANIDARDRWGSTAAADAKYYGNVEVYNILK 139
              K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct:   609 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 640

GO:0002087 "regulation of respiratory gaseous exchange by neurological system process" evidence=IEA

GO:0007610 "behavior" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004359 "glutaminase activity" evidence=IDA;NAS

GO:0005739 "mitochondrion" evidence=IDA;NAS

GO:0006543 "glutamine catabolic process" evidence=IDA;NAS

GO:0006537 "glutamate biosynthetic process" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0051289 "protein homotetramerization" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0014047 "glutamate secretion" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

MGI|MGI:95752 Gls "glutaminase" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 39/92 (42%), Positives = 56/92 (60%)

Query:    49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
             + + S + LLF A +GDV  +       +D+   D D RTALH+AA EGHVEVVK LL  
Sbjct:   554 QRVKSVINLLFAAYTGDVSALRRFALSAMDMEQRDYDSRTALHVAAAEGHVEVVKFLLEA 613

Query:   109 -KANIDARDRWGSTAAADAKYYGNVEVYNILK 139
              K N   +DRW +T   +A ++G+ +V+ IL+
Sbjct:   614 CKVNPFPKDRWNNTPMDEALHFGHHDVFKILQ 645

GO:0002087 "regulation of respiratory gaseous exchange by neurological system process" evidence=IMP

GO:0004359 "glutaminase activity" evidence=ISO;IDA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO

GO:0006537 "glutamate biosynthetic process" evidence=ISO;IDA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0006543 "glutamine catabolic process" evidence=ISO;IDA;IMP

GO:0007268 "synaptic transmission" evidence=IMP

GO:0007610 "behavior" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=ISO;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034725001 SubName- Full=Chromosome chr5 scaffold_72, whole genome shotgun sequence; (476 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-21
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-14
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-12
pfam00023	33	pfam00023, Ank, Ankyrin repeat	5e-12
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	6e-12
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-10
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	1e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-09
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-09
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-08
smart00248	30	smart00248, ANK, ankyrin repeats	1e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	9e-07
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	2e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-06
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	3e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	8e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	7e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	0.002
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 95.5 bits (238), Expect = 2e-25
 Identities = 48/104 (46%), Positives = 66/104 (63%), Gaps = 4/104 (3%)

Query: 57  LLFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
            L +A S G ++ V+ LL  G DVN+ D DGRT LH+AA  GH+E+VKLLL K A+++AR
Sbjct: 10  PLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNAR 69

Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 156
           D+ G+T    A   GN++V  +L   GA V    K  RTP+ +A
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 84.7 bits (210), Expect = 3e-21
 Identities = 35/78 (44%), Positives = 52/78 (66%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
           A +G ++ V+ LL +G DVN+ D DG T LH+AA  G+++VVKLLL   A+++ARD+ G 
Sbjct: 48  AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGR 107

Query: 121 TAAADAKYYGNVEVYNIL 138
           T    A   G++EV  +L
Sbjct: 108 TPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 82.7 bits (205), Expect = 8e-21
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 2/89 (2%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   A +G+++ V+ LL +G DVN  D D  TALH+AA  G++E+VKLLL   A+++A+D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
           + G+TA   A   GN+E+  +L   GA +
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADI 87

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 79.6 bits (197), Expect = 1e-19
 Identities = 32/68 (47%), Positives = 46/68 (67%), Gaps = 1/68 (1%)

Query: 50  NLDSTMQLLFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
           NL  T   L +A  +G+++ V+ LL  G DVN+ D DG TALH+AA  G++E+VKLLL  
Sbjct: 24  NLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Query: 109 KANIDARD 116
            A+I+ +D
Sbjct: 84  GADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 65.5 bits (160), Expect = 7e-14
 Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 9/83 (10%)

Query: 80  NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYN 136
           N+ D DGRT LH+AA  GH+EVVKLLL   A+++A+D  G T    AA     G++E+  
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAA---KNGHLEIVK 57

Query: 137 ILKARGAKVP---KTKRTPMTVA 156
           +L  +GA V    K   TP+ +A
Sbjct: 58  LLLEKGADVNARDKDGNTPLHLA 80

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 40/107 (37%), Positives = 53/107 (49%), Gaps = 4/107 (3%)

Query: 34  DPIRRSPVQDEL--TVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALH 91
            P      ++ +   V   L  T++L  +A SGD  G   LL  G D N  D DGRT LH
Sbjct: 63  TPDHNLTTEEVIDPVVAHML--TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLH 120

Query: 92  IAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 138
           IA   GHV+VV++LL   A+    D+ G T    A+  G  EV  +L
Sbjct: 121 IACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 57.9 bits (141), Expect = 5e-12
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDR 117
           DG T LH+AA  GH+EVVKLLL   A+++ARD+
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 64.1 bits (156), Expect = 6e-12
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 2/92 (2%)

Query: 49  ENLDSTM--QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL 106
           E+ D  M   LL +A +G+   +E+LL   +D +  D  GRT LHIAA +G+ + V +LL
Sbjct: 519 EHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLL 578

Query: 107 SKKANIDARDRWGSTAAADAKYYGNVEVYNIL 138
               N+  RD  G+TA  +A    + +++ IL
Sbjct: 579 KHACNVHIRDANGNTALWNAISAKHHKIFRIL 610

Length = 823

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 28/50 (56%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL 106
           L +A   G++  V+ LL  G DVN+ D DGRT LH+AA  GH+EVVKLLL
Sbjct: 77  LHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 53.4 bits (129), Expect = 4e-10
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 54  TMQLLFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL 106
               L  A  SG ++ V+ LL +G+D+N  D DG TALHIAA  G++EV+KLLL
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 72  LLNEG-IDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 122
           LL  G ID+N+ D +G T LH+AA  G +E+V+ LL    +++ RD  G TA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTA 52

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 69  VEDLLNEGI---DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 125
            + LL  G      N  D DG T LH AA  G  ++V+LLL   A+ ++R+ +G TA   
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186

Query: 126 AKYYGNVEVYNILKARG 142
           A   G +E+  +L  +G
Sbjct: 187 AAKNGRIELVKLLLDKG 203

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 50.3 bits (121), Expect = 5e-09
 Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 6/56 (10%)

Query: 86  GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNIL 138
           GRTALH AA  G +E+VK LL K  +I+  D  G+TA   AA     GN+EV  +L
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAA---ENGNLEVLKLL 53

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 54.6 bits (132), Expect = 6e-09
 Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 22/135 (16%)

Query: 50  NLDSTMQLLFMACSG--DVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVE-VVKLLL 106
               T   L++  S       V  LL  G DVN+ +  G T LH+         V+KLL+
Sbjct: 45  EYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLI 104

Query: 107 SKKANIDARDRWGSTAAADAKYYGNVE----VYNILKARGAKVPKTKRTPMTVANPREVP 162
              A+++A+D+ G T      Y         V  +L  +G             A+   + 
Sbjct: 105 KAGADVNAKDKVGRTPL--HVYLSGFNINPKVIRLLLRKG-------------ADVNALD 149

Query: 163 EYELNPLELQVRKAD 177
            Y + PL + ++  +
Sbjct: 150 LYGMTPLAVLLKSRN 164

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 54.3 bits (131), Expect = 8e-09
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 18/107 (16%)

Query: 55  MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAA--CEGHVEVVKLLLSKKANI 112
           +       S     VE LL+ G +VN  + DG   LH+     +  ++++KLL+ K  +I
Sbjct: 110 LLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDI 169

Query: 113 DARDR----------------WGSTAAADAKYYGNVEVYNILKARGA 143
           +A++R                +G T    A Y  N E    L   GA
Sbjct: 170 NAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA 216

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 9/122 (7%)

Query: 32  SLDPIRRSPVQDELTVPENLDSTMQLLFMACSG-DVKGVEDLLNEGIDVNSIDLDGRTAL 90
            +  I+   ++D+L         +  L++A    ++  V+ LL+ G D+NS   +  T L
Sbjct: 14  KVKNIKYIIMEDDLNDYSYKKPVL-PLYLAKEARNIDVVKILLDNGADINSSTKNNSTPL 72

Query: 91  HIAACEGHV-----EVVKLLLSKKANIDARDRWGST--AAADAKYYGNVEVYNILKARGA 143
           H  +   +      E+VKLLL   AN++A D  G T    A +K   +  +   L   GA
Sbjct: 73  HYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGA 132

Query: 144 KV 145
            V
Sbjct: 133 NV 134

Length = 422

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 49.1 bits (118), Expect = 1e-08
 Identities = 20/30 (66%), Positives = 25/30 (83%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDA 114
           DGRT LH+AA  G++EVVKLLL K A+I+A
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 22/58 (37%), Positives = 37/58 (63%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 114
           L   A   D+  +++LL +G++V+S D  G TAL +A  E HV++V+LL+   A++D 
Sbjct: 626 LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDK 683

Length = 823

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 26/83 (31%), Positives = 39/83 (46%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           V  LL+ G+ +N  D+ G T LH A    + E VK LL   AN +  +++G T    A  
Sbjct: 175 VNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAIL 234

Query: 129 YGNVEVYNILKARGAKVPKTKRT 151
             N E++ +L   G  +     T
Sbjct: 235 NNNKEIFKLLLNNGPSIKTIIET 257

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 47.5 bits (112), Expect = 9e-07
 Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 8/102 (7%)

Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAA-----CEGHVEVVKL 104
           +LD  + L   A  GD K V+ LL  G DVN+ D DG T LH+AA      EG++EV KL
Sbjct: 70  DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKL 129

Query: 105 LLSKKA---NIDARDRWGSTAAADAKYYGNVEVYNILKARGA 143
           LL   A     + RD  G+T    A   G+ ++  +L   GA
Sbjct: 130 LLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171

Length = 235

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDA 114
           DG T LH+AA  G++E+VKLLL   A+I+A
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 47.7 bits (113), Expect = 2e-06
 Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 13/136 (9%)

Query: 64  GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA 123
           GD++ ++ L   G DVN  D +G   +HIA      +++KLLL K A  + +D  G +  
Sbjct: 135 GDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPL 194

Query: 124 ADAKYYGNVEVYNILKARGAKVP-KTKR--TPMTVA--NPREVPEYELNPLELQVRKADG 178
            +A  YG+     +L   G  +  K K   TP+  A  + R   E  +N   +  +  DG
Sbjct: 195 HNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDG 254

Query: 179 ITKAWPVPLIFVHYVI 194
            T     PL   H+ I
Sbjct: 255 ST-----PL---HHAI 262

Length = 434

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 27/113 (23%)

Query: 30  QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGD-------------VKGVEDLLN-- 74
            +  D + RS +       ENL+ T  LL ++C G              V  VE +L   
Sbjct: 45  INCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHL 104

Query: 75  EGID--------VNSIDLD----GRTALHIAACEGHVEVVKLLLSKKANIDAR 115
                        N         G TALH+AA   + E+VKLLL + A++ AR
Sbjct: 105 LAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPAR 157

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 21/81 (25%), Positives = 38/81 (46%)

Query: 72  LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 131
           L+  G D +  + D  + LH+A   G ++ ++LL+  KA +D  D  G T    A   G+
Sbjct: 121 LIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD 180

Query: 132 VEVYNILKARGAKVPKTKRTP 152
           + +  +L   GA +    +  
Sbjct: 181 IAICKMLLDSGANIDYFGKNG 201

Length = 413

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 6/56 (10%)

Query: 65  DVKGVEDLLNEGIDVNSIDLDGRTALHI----AACEGHVEVVKLLLSKKANIDARD 116
           + K +  LL +G DVN++DL G T L +          VE+++LL+   A++ A D
Sbjct: 131 NPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNAN--VELLRLLIDAGADVYAVD 184

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 47  VPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL 106
              +  +T  L +   + D +  E LL+ G +VN  D    + LH A    +  +V +LL
Sbjct: 163 KDRHKGNT-ALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILL 221

Query: 107 SKKANIDARDRWGSTAAADA-KYYGNVEVYNILKARGAKV 145
              A+ DARD+ G+T    +  Y  + ++  +L   G  V
Sbjct: 222 ENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDV 261

Length = 477

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 109
           N D    L      GD+KG+E L++    ++  D  G T L IA  +G + + K+LL   
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191

Query: 110 ANIDARDRWGSTAAADAKYYGN-VEVYNILKARGA 143
           ANID   + G  AA       N +++  +   RGA
Sbjct: 192 ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGA 226

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 2/99 (2%)

Query: 49  ENLDSTMQLLFMACSG-DVKGVEDLLNEGIDVNSIDLDGRTALHIAAC-EGHVEVVKLLL 106
           +N+     L  MA +G D + +  L+  G DVN+ D    T LH A+  + + ++V  LL
Sbjct: 303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLL 362

Query: 107 SKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
              AN++ARD    T    A    NV + N L   GA +
Sbjct: 363 ELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI 401

Length = 682

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 39.4 bits (91), Expect = 6e-04
 Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 28  GRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGR 87
                L  +      D     +   +    L +  +  +  +   L     + + DLDGR
Sbjct: 15  FLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGR 74

Query: 88  TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA-----AADAKYYGNVEVYNILKARG 142
             LH AA +G  ++VKLLL+  A+++A+D  G T             GN+EV  +L   G
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134

Query: 143 AK 144
           A 
Sbjct: 135 AD 136

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.0 bits (94), Expect = 6e-04
 Identities = 19/72 (26%), Positives = 33/72 (45%)

Query: 55  MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 114
           +  +    S     V  LL  GI +N+ +  G+T LH AA   +    + L++  A+I+A
Sbjct: 226 LHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINA 285

Query: 115 RDRWGSTAAADA 126
               G+T  +  
Sbjct: 286 VSSDGNTPLSLM 297

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 22/75 (29%), Positives = 40/75 (53%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           ++ +L+ GIDVN  D + +T LH A  +G +E +K+L    A+++  D  G      A  
Sbjct: 107 IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIK 166

Query: 129 YGNVEVYNILKARGA 143
           +   ++  +L  +GA
Sbjct: 167 HNFFDIIKLLLEKGA 181

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 19/44 (43%), Positives = 28/44 (63%)

Query: 70  EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID 113
           E LL  G DVN+ D+   T +H AA  G+ ++V LLLS  A+++
Sbjct: 162 EMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN 205

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 64  GDVKGVEDLLNEGIDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANID 113
           GDVK VE+LL+ G   + +   DG T LH+A     ++++KLL+++ A+ D
Sbjct: 79  GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD 129

Length = 413

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 39.3 bits (91), Expect = 0.001
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 36  IRRSPVQDELTVPE------------NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSID 83
           I+    QDEL + E            ++     + + A  G+ K V  LL+ G DVN I 
Sbjct: 149 IKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIA 208

Query: 84  LDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           LD  + L  A    +++ +K ++  ++NI+  D
Sbjct: 209 LDDLSVLECAVDSKNIDTIKAIIDNRSNINKND 241

Length = 682

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 10/87 (11%)

Query: 65  DVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAA 124
           D + VE+LL+ G   N  D DG   LHIA+   +  +V +LL+  A+ +A D+   T   
Sbjct: 51  DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPL- 109

Query: 125 DAKYYGN------VEVYNILKARGAKV 145
              YY +      +E  N+L   GAK+
Sbjct: 110 ---YYLSGTDDEVIERINLLVQYGAKI 133

Length = 446

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 37.1 bits (85), Expect = 0.004
 Identities = 26/55 (47%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           L  A  +GD   VE LL  G D NS +  G TAL  AA  G +E+VKLLL K  +
Sbjct: 151 LHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLH 205

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02878	477	ankyrin repeat protein; Provisional	99.92
PHA02875	413	ankyrin repeat protein; Provisional	99.92
PHA02875	413	ankyrin repeat protein; Provisional	99.92
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02874	434	ankyrin repeat protein; Provisional	99.91
PHA02878	477	ankyrin repeat protein; Provisional	99.91
PHA03100	480	ankyrin repeat protein; Provisional	99.9
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.9
PHA03095	471	ankyrin-like protein; Provisional	99.9
PHA02798	489	ankyrin-like protein; Provisional	99.9
PHA02874	434	ankyrin repeat protein; Provisional	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
KOG0508	615	consensus Ankyrin repeat protein [General function	99.9
PHA02946	446	ankyin-like protein; Provisional	99.89
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
PHA03095	471	ankyrin-like protein; Provisional	99.88
PHA02859	209	ankyrin repeat protein; Provisional	99.88
PHA02946	446	ankyin-like protein; Provisional	99.88
PHA02989	494	ankyrin repeat protein; Provisional	99.87
PHA02798	489	ankyrin-like protein; Provisional	99.87
PHA02989	494	ankyrin repeat protein; Provisional	99.87
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
PHA02876	682	ankyrin repeat protein; Provisional	99.87
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
PHA02795	437	ankyrin-like protein; Provisional	99.86
PHA02917	661	ankyrin-like protein; Provisional	99.86
KOG0508	615	consensus Ankyrin repeat protein [General function	99.86
PHA02876	682	ankyrin repeat protein; Provisional	99.86
PHA02884	300	ankyrin repeat protein; Provisional	99.86
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.86
PHA02741	169	hypothetical protein; Provisional	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.86
KOG0510	929	consensus Ankyrin repeat protein [General function	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
PHA02917	661	ankyrin-like protein; Provisional	99.83
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.83
PHA02795	437	ankyrin-like protein; Provisional	99.82
KOG0510	929	consensus Ankyrin repeat protein [General function	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.82
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.82
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
KOG0514	452	consensus Ankyrin repeat protein [General function	99.78
PHA02884	300	ankyrin repeat protein; Provisional	99.78
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.77
KOG0514	452	consensus Ankyrin repeat protein [General function	99.77
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.76
PHA02730	672	ankyrin-like protein; Provisional	99.76
PHA02736	154	Viral ankyrin protein; Provisional	99.76
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.75
PHA02730	672	ankyrin-like protein; Provisional	99.75
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.75
PHA02741	169	hypothetical protein; Provisional	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
PHA02792	631	ankyrin-like protein; Provisional	99.7
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.69
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.68
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.67
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.66
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.64
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.64
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.62
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.62
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.59
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.58
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.57
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.55
PHA02792	631	ankyrin-like protein; Provisional	99.55
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.53
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.53
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.51
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.51
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.47
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.42
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.41
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.41
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.41
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.38
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.32
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.24
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.16
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.11
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.96
PF13606	30	Ank_3: Ankyrin repeat	98.95
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.9
PF13606	30	Ank_3: Ankyrin repeat	98.88
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.82
KOG0522	560	consensus Ankyrin repeat protein [General function	98.81
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.81
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.76
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.74
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.69
KOG0511	516	consensus Ankyrin repeat protein [General function	98.55
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.46
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.41
KOG0511	516	consensus Ankyrin repeat protein [General function	98.38
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.37
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.35
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.31
KOG2384	223	consensus Major histocompatibility complex protein	98.29
KOG2384	223	consensus Major histocompatibility complex protein	98.18
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.14
KOG0522	560	consensus Ankyrin repeat protein [General function	98.08
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.91
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.88
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.78
KOG2505	591	consensus Ankyrin repeat protein [General function	97.51
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.27
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.18
KOG2505	591	consensus Ankyrin repeat protein [General function	96.76
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.3
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	88.93
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.43
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.4
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	81.17
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	80.67

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=4e-31  Score=187.10  Aligned_cols=154  Identities=29%  Similarity=0.350  Sum_probs=132.0

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHH-hCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCH
Q 027950           45 LTVPENLDSTMQLLFMACSGDVKGVEDLL-NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTA  122 (216)
Q Consensus        45 ~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~  122 (216)
                      .+...+.+|.|||||||..|+.+++.+|+ +.+..+|.+|..|+||||.|++.|+.++|+.|+.+ |+++|..++.|.|+
T Consensus        30 L~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~  109 (226)
T KOG4412|consen   30 LNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTC  109 (226)
T ss_pred             hhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcce
Confidence            34455668999999999999999999999 45778888899999999999999999999999988 99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------
Q 027950          123 AADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------  190 (216)
Q Consensus       123 L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------  190 (216)
                      ||||+..|..+++.+|+++|+.++.+   |+||||.|+..+.    ++.+++|+..|+.++   ..++||+|.+      
T Consensus       110 LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGk----lkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~  185 (226)
T KOG4412|consen  110 LHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGK----LKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHP  185 (226)
T ss_pred             ehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccc----hhhHHHHHhcCCCCCcccccCccHHHHHHhccCc
Confidence            99999999999999999999998766   9999999888773    345788888888775   6788998888      


Q ss_pred             HHHHHHHHcCCC
Q 027950          191 HYVILLRQAGSF  202 (216)
Q Consensus       191 ~~~~~l~~~g~~  202 (216)
                      ..+.+|...|+.
T Consensus       186 d~a~lLV~~gAd  197 (226)
T KOG4412|consen  186 DVAVLLVRAGAD  197 (226)
T ss_pred             hHHHHHHHhccc
Confidence            567788888864

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=6.6e-28  Score=170.81  Aligned_cols=159  Identities=27%  Similarity=0.313  Sum_probs=132.2

Q ss_pred             ccCCCCcccccCCCCCCC-CCCCCccchHHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCchHHHHHHHcCCHHHHHHH
Q 027950           28 GRQSSLDPIRRSPVQDEL-TVPENLDSTMQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLL  105 (216)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L  105 (216)
                      ...+..+.+..++..... ....+..||||||.||..|+.++|+.|+.+ |+++|..+..|.|+||+|+..|+.+++++|
T Consensus        46 ~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlL  125 (226)
T KOG4412|consen   46 CSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLL  125 (226)
T ss_pred             eecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHH
Confidence            334555555555534433 344466799999999999999999999988 999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCCCC
Q 027950          106 LSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITKA  182 (216)
Q Consensus       106 l~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~~  182 (216)
                      ++.|+.++++|..|.||||.|+..|...++++|+..|+.+|..   |+||||.|...+..+    ...+|++.|++.+..
T Consensus       126 le~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d----~a~lLV~~gAd~~~e  201 (226)
T KOG4412|consen  126 LEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPD----VAVLLVRAGADTDRE  201 (226)
T ss_pred             HhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCch----HHHHHHHhccceeec
Confidence            9999999999999999999999999999999999999999765   999999995445444    366788999998743


Q ss_pred             CC--cchHHH
Q 027950          183 WP--VPLIFV  190 (216)
Q Consensus       183 ~~--~~l~~~  190 (216)
                      +.  |++..+
T Consensus       202 dke~t~~~~a  211 (226)
T KOG4412|consen  202 DKEGTALRIA  211 (226)
T ss_pred             cccCchHHHH
Confidence            33  555444

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=1e-27  Score=197.94  Aligned_cols=175  Identities=24%  Similarity=0.314  Sum_probs=151.3

Q ss_pred             ccccccCCCCcccccCCCC-CCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccC-CCCchHHHHHHHcCCHHH
Q 027950           24 RFSFGRQSSLDPIRRSPVQ-DELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSID-LDGRTALHIAACEGHVEV  101 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~a~~~~~~~~  101 (216)
                      .+.....|.++.++..... +....+.+.+|.|+|||||.++..+++++|+++|+++|... ..+.||||||+++|+..+
T Consensus        48 ~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~v  127 (600)
T KOG0509|consen   48 IVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISV  127 (600)
T ss_pred             hhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHH
Confidence            3566778889999888777 77777778899999999999999999999999999999987 678999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcC
Q 027950          102 VKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                      +++|+++|||++.+|.+|.+|+|.|++.|+..++.+|+.+|+++|..   |+|||++|+.++....    +..++.-|+.
T Consensus       128 v~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~----v~~LL~f~a~  203 (600)
T KOG0509|consen  128 VDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALF----VRRLLKFGAS  203 (600)
T ss_pred             HHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHH----HHHHHHhccc
Confidence            99999999999999999999999999999999999999999999765   9999999998876543    4566666776


Q ss_pred             CC----CCCCcchHHH------HHHHHHHHcCCC
Q 027950          179 IT----KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       179 ~~----~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      +.    ..+.||+|+|      ..+.++++.|+.
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~  237 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD  237 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEehhhhcCCc
Confidence            63    6789999998      445544455443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.2e-26  Score=180.02  Aligned_cols=175  Identities=17%  Similarity=0.109  Sum_probs=131.9

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      .+++.....+..+.++.++..+.....  .++.||||+|+..|+.++++.|++.|++++..+..|.||||+|+..|+.++
T Consensus        32 TpLh~Aa~~g~~eiv~~Ll~~ga~~n~--~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~ei  109 (284)
T PHA02791         32 SALYYAIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQT  109 (284)
T ss_pred             cHHHHHHHcCCHHHHHHHHHCcCCCcC--CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            334444456666666665555433222  246789999998899999999988888888888888999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHHCCCCC-CC-CCCCchhcccCCCCcccccchhhHHHHhhcC
Q 027950          102 VKLLLSKKANIDARDRWGS-TAAADAKYYGNVEVYNILKARGAKV-PK-TKRTPMTVANPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~~~g~-t~L~~a~~~g~~~~~~~Ll~~g~~~-~~-~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                      +++|++.|++++..+..|+ ||||+|+..|+.+++++|++++++. +. .|.||||+|+..+..+    ++++|+..|++
T Consensus       110 vk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~e----iv~lLL~~gAd  185 (284)
T PHA02791        110 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVD----MMILLLDYMTS  185 (284)
T ss_pred             HHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHH----HHHHHHHCCCC
Confidence            9999988888888887774 7888888888888888888887654 32 3788888888887554    47788888888


Q ss_pred             CCCC---CCcc-hHHH------HHHHHHHHcCCC
Q 027950          179 ITKA---WPVP-LIFV------HYVILLRQAGSF  202 (216)
Q Consensus       179 ~~~~---~~~~-l~~~------~~~~~l~~~g~~  202 (216)
                      ++..   +.+| ++.|      .++++|++.|+.
T Consensus       186 ~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~  219 (284)
T PHA02791        186 TNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN  219 (284)
T ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC
Confidence            7643   3344 6776      677888888875

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=6.4e-26  Score=178.33  Aligned_cols=185  Identities=12%  Similarity=0.027  Sum_probs=152.7

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCC-chHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDG-RTALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g-~t~L~~a~~~~~~~  100 (216)
                      .++...+..+..+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+.+
T Consensus        63 TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~e  142 (284)
T PHA02791         63 FPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS  142 (284)
T ss_pred             CHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHH
Confidence            34444555777787777777776666778889999999999999999999999999999888877 48999999999999


Q ss_pred             HHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCc-hhcccCCCCcccccchhhHHHHh
Q 027950          101 VVKLLLSKKANIDARD-RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTP-MTVANPREVPEYELNPLELQVRK  175 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~-~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~-l~~a~~~~~~~~~~~~~~~l~~~  175 (216)
                      ++++|+..+.+.  .+ ..|.||||+|+..|+.+++++|+++|+++|..   |.|| ||+|+..+..+    ++++|+..
T Consensus       143 ivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e----~v~lLl~~  216 (284)
T PHA02791        143 IVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLE----MLQALFKY  216 (284)
T ss_pred             HHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHH----HHHHHHHC
Confidence            999999987543  23 35899999999999999999999999999876   7776 99999998655    58899999


Q ss_pred             hcCCCC--CCCcchHHHHHHHHHHHcCCCCCcccccccc
Q 027950          176 ADGITK--AWPVPLIFVHYVILLRQAGSFNQELEYVNGI  212 (216)
Q Consensus       176 g~~~~~--~~~~~l~~~~~~~~l~~~g~~~~~~~~~~~i  212 (216)
                      |++++.  ...+++..+.++++|++..+....-.|.+.+
T Consensus       217 Ga~in~~~~~~~~l~~~e~~~~ll~~~~~~~~~~~~~~~  255 (284)
T PHA02791        217 DINIYSVNLENVLLDDAEIAKMIIEKHVEYKSDSYTKDL  255 (284)
T ss_pred             CCCCccCcccCccCCCHHHHHHHHHhhhhhcccccccch
Confidence            999973  3557788899999999998863332254444

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=7.2e-25  Score=185.52  Aligned_cols=176  Identities=20%  Similarity=0.171  Sum_probs=138.8

Q ss_pred             ccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHH------------------------------------
Q 027950           24 RFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVK------------------------------------   67 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~------------------------------------   67 (216)
                      ++.++..++.+.++.++..+......+..|.||||+||..|+.+                                    
T Consensus        41 Lh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~L  120 (477)
T PHA02878         41 LHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKII  120 (477)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHH
Confidence            45556678888888877777666667788889999888764432                                    


Q ss_pred             ----------------------------HHHHHHhCCCCCCccCCC-CchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q 027950           68 ----------------------------GVEDLLNEGIDVNSIDLD-GRTALHIAACEGHVEVVKLLLSKKANIDARDRW  118 (216)
Q Consensus        68 ----------------------------~v~~Ll~~~~~~~~~~~~-g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  118 (216)
                                                  +++.|+++|++++..+.. |.||||+|+..|+.+++++|++.|++++..+..
T Consensus       121 l~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~  200 (477)
T PHA02878        121 LTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKT  200 (477)
T ss_pred             HhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCC
Confidence                                        566667778888888777 889999999999999999999999999888888


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCCC----CCCcchHHH-
Q 027950          119 GSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITK----AWPVPLIFV-  190 (216)
Q Consensus       119 g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~----~~~~~l~~~-  190 (216)
                      |.||||+|+..|+.+++++|+++|++++..   |.||||+|+....   ..++++++++.|++++.    .+.||+|.| 
T Consensus       201 g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~---~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~  277 (477)
T PHA02878        201 NNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCK---DYDILKLLLEHGVDVNAKSYILGLTALHSSI  277 (477)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcC---CHHHHHHHHHcCCCCCccCCCCCCCHHHHHc
Confidence            999999999999999999999999888655   8899998875421   23457888888888863    467888888 


Q ss_pred             ---HHHHHHHHcCCC
Q 027950          191 ---HYVILLRQAGSF  202 (216)
Q Consensus       191 ---~~~~~l~~~g~~  202 (216)
                         .++++|++.|+.
T Consensus       278 ~~~~~v~~Ll~~gad  292 (477)
T PHA02878        278 KSERKLKLLLEYGAD  292 (477)
T ss_pred             cCHHHHHHHHHCCCC
Confidence               567888888875

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.2e-24  Score=179.47  Aligned_cols=175  Identities=20%  Similarity=0.185  Sum_probs=143.7

Q ss_pred             cccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCC-ccCCCCchHHHHHHHcCCHHHHH
Q 027950           25 FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVN-SIDLDGRTALHIAACEGHVEVVK  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~a~~~~~~~~~~  103 (216)
                      ..+...++.+.++.+...+........++.||||.|+..|+.++++.|++.|.+++ ..+..|.||||+|+..|+.++++
T Consensus        40 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~  119 (413)
T PHA02875         40 KLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMK  119 (413)
T ss_pred             HHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHH
Confidence            33445677777777777666655556778899999999999999999998887654 34567899999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC
Q 027950          104 LLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT  180 (216)
Q Consensus       104 ~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~  180 (216)
                      +|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    ++++++..|++++
T Consensus       120 ~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~e----iv~~Ll~~ga~~n  195 (413)
T PHA02875        120 LLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIA----ICKMLLDSGANID  195 (413)
T ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCC
Confidence            999999999999999999999999999999999999999998654   999999999887654    5788999999987


Q ss_pred             C----CCCcchHHH------HHHHHHHHcCCCC
Q 027950          181 K----AWPVPLIFV------HYVILLRQAGSFN  203 (216)
Q Consensus       181 ~----~~~~~l~~~------~~~~~l~~~g~~~  203 (216)
                      .    .+.++++.|      .++++|++.|+..
T Consensus       196 ~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        196 YFGKNGCVAALCYAIENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             cCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCc
Confidence            3    234677755      6889999999863

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.9e-24  Score=178.81  Aligned_cols=176  Identities=22%  Similarity=0.131  Sum_probs=151.7

Q ss_pred             cccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHH
Q 027950           25 FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKL  104 (216)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  104 (216)
                      ..+...|+.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+.+++++
T Consensus         7 ~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~   86 (413)
T PHA02875          7 CDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEE   86 (413)
T ss_pred             HHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHH
Confidence            34455677777777777766655667789999999999999999999999999999888889999999999999999999


Q ss_pred             HHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC
Q 027950          105 LLSKKANID-ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT  180 (216)
Q Consensus       105 Ll~~g~~~~-~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~  180 (216)
                      |++.|++++ ..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    .+++++..|++++
T Consensus        87 Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~----~v~~Ll~~g~~~~  162 (413)
T PHA02875         87 LLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIK----GIELLIDHKACLD  162 (413)
T ss_pred             HHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence            999988764 45678999999999999999999999999998765   999999999888554    5888999999875


Q ss_pred             ---CCCCcchHHH------HHHHHHHHcCCCCC
Q 027950          181 ---KAWPVPLIFV------HYVILLRQAGSFNQ  204 (216)
Q Consensus       181 ---~~~~~~l~~~------~~~~~l~~~g~~~~  204 (216)
                         ..+.||++.|      .++++|++.|+...
T Consensus       163 ~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n  195 (413)
T PHA02875        163 IEDCCGCTPLIIAMAKGDIAICKMLLDSGANID  195 (413)
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC
Confidence               6788999988      68899999998643

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=4.5e-24  Score=180.79  Aligned_cols=170  Identities=26%  Similarity=0.287  Sum_probs=101.9

Q ss_pred             cCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcC--CHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHH
Q 027950           29 RQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSG--DVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL  106 (216)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g--~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  106 (216)
                      ..++.+.++.+...+......+..|.||||+|+..|  +.+++++|+++|++++..+..|.||||+|+..|+.+++++|+
T Consensus       117 ~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll  196 (480)
T PHA03100        117 KSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLL  196 (480)
T ss_pred             ccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHH
Confidence            455555555555555444445555666666666666  666666666666666666666666666666666666666666


Q ss_pred             hCCCCCCCCCCCC------CCHHHHHHHcCC--HHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHh
Q 027950          107 SKKANIDARDRWG------STAAADAKYYGN--VEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRK  175 (216)
Q Consensus       107 ~~g~~~~~~~~~g------~t~L~~a~~~g~--~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~  175 (216)
                      +.|++++..+..|      .||||+|+..|+  .+++++|+++|+++|..   |.||||+|+..+..+    +++++++.
T Consensus       197 ~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~----iv~~Ll~~  272 (480)
T PHA03100        197 DNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE----FVKYLLDL  272 (480)
T ss_pred             HcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHc
Confidence            6666666665555      566666666666  66666666666665443   666666666655433    35566666


Q ss_pred             hcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          176 ADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       176 g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      |++++   ..+.||++.|      .++.+|++.|+.
T Consensus       273 gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~  308 (480)
T PHA03100        273 GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPS  308 (480)
T ss_pred             CCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCC
Confidence            66654   3455666555      455666666553

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=4.3e-24  Score=161.90  Aligned_cols=167  Identities=14%  Similarity=0.057  Sum_probs=133.8

Q ss_pred             cccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHc--CCHHHHHHHHhCCCCCCccC-CCCchHHHHHHHc-
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACS--GDVKGVEDLLNEGIDVNSID-LDGRTALHIAACE-   96 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~--g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~a~~~-   96 (216)
                      .++++.....++.+.++.++..   ....+..|.||||+|+..  ++.+++++|+++|++++.++ ..|.||||+|+.. 
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~   98 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFN   98 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhC
Confidence            3455666667777777766543   234567799999999985  48999999999999999986 4799999998764 


Q ss_pred             --CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH--cCCHHHHHHHHHCCCCCCCC---CCCchhcc-cCCCCcccccch
Q 027950           97 --GHVEVVKLLLSKKANIDARDRWGSTAAADAKY--YGNVEVYNILKARGAKVPKT---KRTPMTVA-NPREVPEYELNP  168 (216)
Q Consensus        97 --~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~--~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a-~~~~~~~~~~~~  168 (216)
                        ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++.+   |.||||.+ ...+.    .++
T Consensus        99 ~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~----~~i  174 (209)
T PHA02859         99 KNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSD----KKI  174 (209)
T ss_pred             ccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCC----HHH
Confidence              47899999999999999999999999999886  46899999999999998765   99999964 44443    345


Q ss_pred             hhHHHHhhcCCC---CCCCcchHHHHHHH
Q 027950          169 LELQVRKADGIT---KAWPVPLIFVHYVI  194 (216)
Q Consensus       169 ~~~l~~~g~~~~---~~~~~~l~~~~~~~  194 (216)
                      +++|+..|++++   ..+.||+++|..-.
T Consensus       175 v~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        175 FDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            788999999887   46777777775433

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.5e-23  Score=175.55  Aligned_cols=165  Identities=20%  Similarity=0.162  Sum_probs=98.9

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCC-----------------------C
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGI-----------------------D   78 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~-----------------------~   78 (216)
                      .++......+..+.++.++..+......+..|.||||+|+..|+.+++++|+++|+                       +
T Consensus        37 tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d  116 (434)
T PHA02874         37 TPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGID  116 (434)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCC
Confidence            33344444555666655555554444445556666666666666666666665543                       2


Q ss_pred             CCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhc
Q 027950           79 VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTV  155 (216)
Q Consensus        79 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~  155 (216)
                      ++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+
T Consensus       117 ~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~  196 (434)
T PHA02874        117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHN  196 (434)
T ss_pred             CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            3445556666666666666666666666666666666666666666666666666666666666665433   6666666


Q ss_pred             ccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          156 ANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       156 a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      |+..+..+    +++++++.|++++   ..+.||++.|
T Consensus       197 A~~~g~~~----iv~~Ll~~g~~i~~~~~~g~TpL~~A  230 (434)
T PHA02874        197 AAEYGDYA----CIKLLIDHGNHIMNKCKNGFTPLHNA  230 (434)
T ss_pred             HHHcCCHH----HHHHHHhCCCCCcCCCCCCCCHHHHH
Confidence            66655433    3566666666553   3455666555

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.1e-23  Score=178.30  Aligned_cols=150  Identities=21%  Similarity=0.202  Sum_probs=130.7

Q ss_pred             ccccCCCCCCCCCCCCcc-chHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCC
Q 027950           35 PIRRSPVQDELTVPENLD-STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID  113 (216)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~-~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~  113 (216)
                      .++.++..+......+.. |.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..++.+++++|++.|++++
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in  228 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD  228 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            344444555555555666 9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC----CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCc
Q 027950          114 ARDRWGSTAAADAKYY-GNVEVYNILKARGAKVPKT----KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPV  185 (216)
Q Consensus       114 ~~~~~g~t~L~~a~~~-g~~~~~~~Ll~~g~~~~~~----g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~  185 (216)
                      .+|..|+||||+|+.. ++.+++++|+++|+++|..    |.||||+|+..  .    ..+++|+..|++++   ..+.|
T Consensus       229 ~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~~~--~----~~v~~Ll~~gadin~~d~~g~T  302 (477)
T PHA02878        229 ARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKS--E----RKLKLLLEYGADINSLNSYKLT  302 (477)
T ss_pred             CCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHccC--H----HHHHHHHHCCCCCCCcCCCCCC
Confidence            9999999999999976 6899999999999999764    99999999432  2    35789999999987   56788


Q ss_pred             chHHH
Q 027950          186 PLIFV  190 (216)
Q Consensus       186 ~l~~~  190 (216)
                      |++.|
T Consensus       303 pL~~A  307 (477)
T PHA02878        303 PLSSA  307 (477)
T ss_pred             HHHHH
Confidence            88877

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2.1e-23  Score=176.79  Aligned_cols=173  Identities=23%  Similarity=0.285  Sum_probs=114.5

Q ss_pred             ccCCCCcccccCCCCCCCCCCCCccchHHHHHHH--HcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcC--CHHHHH
Q 027950           28 GRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMA--CSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEG--HVEVVK  103 (216)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~--~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~  103 (216)
                      ...+..+.++.++..+......+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..+  +.++++
T Consensus        81 ~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~  160 (480)
T PHA03100         81 NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILK  160 (480)
T ss_pred             HhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHH
Confidence            3344555555555555444445556667777777  667777777777777666666666777777777666  667777


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---C------CCchhcccCCCCcccccchhhHHHH
Q 027950          104 LLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---K------RTPMTVANPREVPEYELNPLELQVR  174 (216)
Q Consensus       104 ~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g------~t~l~~a~~~~~~~~~~~~~~~l~~  174 (216)
                      +|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..   |      .||+|.|+..+..  ..+++++++.
T Consensus       161 ~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~--~~~iv~~Ll~  238 (480)
T PHA03100        161 LLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEI--TLEVVNYLLS  238 (480)
T ss_pred             HHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcC--cHHHHHHHHH
Confidence            777777777666666777777777777777777777777766543   3      6667766665531  1335777888


Q ss_pred             hhcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          175 KADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       175 ~g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      .|++++   ..+.||++.|      .++++|++.|+.
T Consensus       239 ~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad  275 (480)
T PHA03100        239 YGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN  275 (480)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            887765   5577888877      577888888873

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.90  E-value=7.1e-24  Score=175.36  Aligned_cols=160  Identities=27%  Similarity=0.234  Sum_probs=139.1

Q ss_pred             cccCCCCcccccCCCCCCCCCCCC-ccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHH
Q 027950           27 FGRQSSLDPIRRSPVQDELTVPEN-LDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLL  105 (216)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L  105 (216)
                      .+-++.++..+.++..+...+... .-+.||||||+++|++.+|..|+++|++++.+|.+|.+|||+|+..++...+-||
T Consensus        85 AAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayl  164 (600)
T KOG0509|consen   85 AAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYL  164 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHH
Confidence            355888999999888886666555 6699999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCchhcccCCCCcccccchhhHHHHhhcCCC-
Q 027950          106 LSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK----TKRTPMTVANPREVPEYELNPLELQVRKADGIT-  180 (216)
Q Consensus       106 l~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~----~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~-  180 (216)
                      +..|++++.+|.+|+||||+|+.+|....+..|+..|+.++.    .|.||||+|+..++.+..    .++.+.|++.+ 
T Consensus       165 l~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v----~Ll~~g~~~~d~  240 (600)
T KOG0509|consen  165 LSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAV----KLLLEGGADLDK  240 (600)
T ss_pred             HHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceE----ehhhhcCCcccc
Confidence            999999999999999999999999998889999999999854    399999999988876643    34455556654 


Q ss_pred             --CCCCcchHHH
Q 027950          181 --KAWPVPLIFV  190 (216)
Q Consensus       181 --~~~~~~l~~~  190 (216)
                        ..+.||+..|
T Consensus       241 ~~~~g~tp~~LA  252 (600)
T KOG0509|consen  241 TNTNGKTPFDLA  252 (600)
T ss_pred             cccCCCCHHHHH
Confidence              4567787777

>PHA03095 ankyrin-like protein; Provisional

Probab=99.90  E-value=6.1e-23  Score=173.50  Aligned_cols=161  Identities=22%  Similarity=0.230  Sum_probs=115.4

Q ss_pred             ccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcC---CHHHHHHHHhCCCCCCccCCCCchHHHHHHHcC-CHHHHH
Q 027950           28 GRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSG---DVKGVEDLLNEGIDVNSIDLDGRTALHIAACEG-HVEVVK  103 (216)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g---~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~-~~~~~~  103 (216)
                      ....+.+.++.++..+......+..|.||||+|+..+   +.++++.|++.|+++|.++..|.||||+|+..+ +.++++
T Consensus        22 ~~~~~~~~v~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~  101 (471)
T PHA03095         22 ASNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIK  101 (471)
T ss_pred             CCCCCHHHHHHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHH
Confidence            4455666667766666665566677888888888877   788888888888888888888888888888888 588888


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcC
Q 027950          104 LLLSKKANIDARDRWGSTAAADAK--YYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       104 ~Ll~~g~~~~~~~~~g~t~L~~a~--~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                      +|++.|++++..+..|.||||+|+  ..++.+++++|+++|++++..   |.||||+|+....  ...+++++++..|++
T Consensus       102 lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~--~~~~iv~~Ll~~g~~  179 (471)
T PHA03095        102 LLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRN--ANVELLRLLIDAGAD  179 (471)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC--CCHHHHHHHHHcCCC
Confidence            888888888888888888888888  445677888888888887653   8888887755431  122345666666666


Q ss_pred             CC---CCCCcchHHH
Q 027950          179 IT---KAWPVPLIFV  190 (216)
Q Consensus       179 ~~---~~~~~~l~~~  190 (216)
                      ++   ..+.||+|.+
T Consensus       180 ~~~~d~~g~t~Lh~~  194 (471)
T PHA03095        180 VYAVDDRFRSLLHHH  194 (471)
T ss_pred             CcccCCCCCCHHHHH
Confidence            54   3455555543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.90  E-value=4.6e-23  Score=174.98  Aligned_cols=173  Identities=18%  Similarity=0.178  Sum_probs=140.6

Q ss_pred             CCCCcccccCCCCCCCCCCCCccchHHHHHHHHc-----CCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcC---CHHH
Q 027950           30 QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACS-----GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEG---HVEV  101 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~-----g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~---~~~~  101 (216)
                      ..+.+.++.++..+......+..|.||||.|+..     +..+++++|+++|+++|.++..|.||||+|+..+   +.++
T Consensus        48 ~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~i  127 (489)
T PHA02798         48 SPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEI  127 (489)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHH
Confidence            4467778888888877777788899999998764     6789999999999999999999999999999875   7899


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCC----CCCchhcccCCCCcccccchhhHHHH
Q 027950          102 VKLLLSKKANIDARDRWGSTAAADAKYYGN---VEVYNILKARGAKVPKT----KRTPMTVANPREVPEYELNPLELQVR  174 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~---~~~~~~Ll~~g~~~~~~----g~t~l~~a~~~~~~~~~~~~~~~l~~  174 (216)
                      +++|++.|++++..|..|.||||+|+..++   .+++++|+++|++++..    |.||+|.+..........++++++++
T Consensus       128 v~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~  207 (489)
T PHA02798        128 LLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVD  207 (489)
T ss_pred             HHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHH
Confidence            999999999999999999999999999987   89999999999999653    78999977543322222334444544


Q ss_pred             hhc---------------------------------------CCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          175 KAD---------------------------------------GIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       175 ~g~---------------------------------------~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      .|+                                       +++   ..+.||++.|      .++++|++.|+.
T Consensus       208 ~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd  283 (489)
T PHA02798        208 NGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD  283 (489)
T ss_pred             CCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            443                                       332   3578888887      578889998886

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.90  E-value=6.7e-23  Score=171.62  Aligned_cols=170  Identities=22%  Similarity=0.218  Sum_probs=109.7

Q ss_pred             cCCCCcccccCCCCC-CCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHh
Q 027950           29 RQSSLDPIRRSPVQD-ELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS  107 (216)
Q Consensus        29 ~~~~~~~~~~~~~~~-~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  107 (216)
                      .+|+++.++.+.... ......+..+.||||.|+..|+.++|++|++.|++++..+..|.||||.|+..|+.+++++|++
T Consensus        10 ~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~   89 (434)
T PHA02874         10 YSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLID   89 (434)
T ss_pred             hcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            355555555544332 2223344556677777777777777777777777777766677777777777777777666665


Q ss_pred             CCC-----------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCC
Q 027950          108 KKA-----------------------NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREV  161 (216)
Q Consensus       108 ~g~-----------------------~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~  161 (216)
                      .|+                       +++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+.
T Consensus        90 ~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~  169 (434)
T PHA02874         90 NGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNF  169 (434)
T ss_pred             CCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCc
Confidence            543                       34556667777777777777777777777777776543   7777777776654


Q ss_pred             cccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          162 PEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       162 ~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      .+    ++++++..|++++   ..+.||++.|      .++++|++.|+.
T Consensus       170 ~~----iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~  215 (434)
T PHA02874        170 FD----IIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH  215 (434)
T ss_pred             HH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            33    4666667776654   4456677666      566666666654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=7.3e-23  Score=177.74  Aligned_cols=171  Identities=17%  Similarity=0.052  Sum_probs=138.0

Q ss_pred             CCCCcccccCCCCC-CCCCCC-CccchHHHHHHHH--cCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCC--HHHHH
Q 027950           30 QSSLDPIRRSPVQD-ELTVPE-NLDSTMQLLFMAC--SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH--VEVVK  103 (216)
Q Consensus        30 ~~~~~~~~~~~~~~-~~~~~~-~~~~~t~L~~a~~--~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~--~~~~~  103 (216)
                      ....+.++.++..+ ...... +..|.||||+|+.  +++.+++++|+++|++++..+..|.||||+|+..|+  .++++
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVk  231 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIK  231 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHH
Confidence            45566667666666 332233 6789999999865  468999999999999999999999999999999985  58999


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHH-------------------------------------HHcCCHHHHHHHHHCCCCCC
Q 027950          104 LLLSKKANIDARDRWGSTAAADA-------------------------------------KYYGNVEVYNILKARGAKVP  146 (216)
Q Consensus       104 ~Ll~~g~~~~~~~~~g~t~L~~a-------------------------------------~~~g~~~~~~~Ll~~g~~~~  146 (216)
                      +|++.|++++.++..|+||||+|                                     +..|+.+++++|+++|+++|
T Consensus       232 lLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN  311 (764)
T PHA02716        232 KIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLH  311 (764)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCcee
Confidence            99999999999999999999975                                     34577899999999999997


Q ss_pred             CC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH--------------------HHHHHHHHcC
Q 027950          147 KT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV--------------------HYVILLRQAG  200 (216)
Q Consensus       147 ~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~--------------------~~~~~l~~~g  200 (216)
                      .+   |+||||+|+..+..  ..+++++|++.|++++   ..+.||+|.+                    .++++|++.|
T Consensus       312 ~kD~~G~TPLH~Aaa~~~~--~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~G  389 (764)
T PHA02716        312 YKDSAGRTCLHQYILRHNI--STDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLG  389 (764)
T ss_pred             ccCCCCCCHHHHHHHHhCC--CchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCC
Confidence            65   99999987543211  1245789999999986   5678999864                    4677888888


Q ss_pred             CC
Q 027950          201 SF  202 (216)
Q Consensus       201 ~~  202 (216)
                      +.
T Consensus       390 AD  391 (764)
T PHA02716        390 AD  391 (764)
T ss_pred             CC
Confidence            75

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-23  Score=168.78  Aligned_cols=181  Identities=22%  Similarity=0.255  Sum_probs=150.7

Q ss_pred             ccCCccccccccccccCCCCcccccCCCCCCCCC---------CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCC
Q 027950           14 SSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTV---------PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDL   84 (216)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~   84 (216)
                      .+..+.-..++...+++|..+.++.++.......         ....+|.+||-.|+..||+++|+.|+.+|+++|....
T Consensus        36 ~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~  115 (615)
T KOG0508|consen   36 IGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTR  115 (615)
T ss_pred             hccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccc
Confidence            3444444567788888999888877655332221         2244577888777788999999999999999998877


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCC
Q 027950           85 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREV  161 (216)
Q Consensus        85 ~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~  161 (216)
                      ...|||.-||.-|+.+++++|+++|+|++..|+.|.|.||+||..|+.+|+++|++.|+|+|.+   |.|+||.+++.+.
T Consensus       116 TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~  195 (615)
T KOG0508|consen  116 TNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGS  195 (615)
T ss_pred             cCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhccc
Confidence            7889999999999999999999999999999999999999999999999999999999999887   9999999999986


Q ss_pred             cccccchhhHHHHhhcCCC--CCCCcchHHH------HHHHHHHH
Q 027950          162 PEYELNPLELQVRKADGIT--KAWPVPLIFV------HYVILLRQ  198 (216)
Q Consensus       162 ~~~~~~~~~~l~~~g~~~~--~~~~~~l~~~------~~~~~l~~  198 (216)
                      .+    ++++|+.+|+.++  ..+.||+..|      .++..|++
T Consensus       196 vd----ivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  196 VD----IVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HH----HHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            55    5889999998875  5689999888      45666654

>PHA02946 ankyin-like protein; Provisional

Probab=99.89  E-value=6.1e-23  Score=171.74  Aligned_cols=156  Identities=16%  Similarity=0.119  Sum_probs=108.3

Q ss_pred             CCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcC--CHHHHHHHHhCC
Q 027950           32 SLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEG--HVEVVKLLLSKK  109 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~Ll~~g  109 (216)
                      ..+.++.++..+......+.+|.||||+|+..|+.++++.|+++|++++.+|..|.||||+|+..+  ..+++++|+++|
T Consensus        51 ~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~G  130 (446)
T PHA02946         51 DERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYG  130 (446)
T ss_pred             CHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence            345566667777777777888999999999999999999999999999999999999999988765  478888888888


Q ss_pred             CCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CC
Q 027950          110 ANIDA-RDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KA  182 (216)
Q Consensus       110 ~~~~~-~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~  182 (216)
                      ++++. .+..|.|||| |+..|+.+++++|+++|++++..   |+||||+|+..+...  ...+++++..|++++   ..
T Consensus       131 adin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~--~~~v~~Ll~~Gadin~~d~~  207 (446)
T PHA02946        131 AKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPK--ASTISWMMKLGISPSKPDHD  207 (446)
T ss_pred             CCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCC--HHHHHHHHHcCCCCcccCCC
Confidence            88874 4666777775 44455666666666666655433   555555554322211  123445555555543   34


Q ss_pred             CCcchHHH
Q 027950          183 WPVPLIFV  190 (216)
Q Consensus       183 ~~~~l~~~  190 (216)
                      +.||+|.|
T Consensus       208 G~TpLH~A  215 (446)
T PHA02946        208 GNTPLHIV  215 (446)
T ss_pred             CCCHHHHH
Confidence            44555544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=2e-22  Score=175.05  Aligned_cols=171  Identities=13%  Similarity=0.092  Sum_probs=138.8

Q ss_pred             CCCcccccCCCCCCCCCCCCccchHHHHHHHHcCC--HHHHHHHHhCCCCCCccCCCCchHHHHH---------------
Q 027950           31 SSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGD--VKGVEDLLNEGIDVNSIDLDGRTALHIA---------------   93 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~--~~~v~~Ll~~~~~~~~~~~~g~t~L~~a---------------   93 (216)
                      +..+.++.++..+......+..|.||||+|+..|+  .++|++|+++|+++|.++..|.||||+|               
T Consensus       190 ~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiL  269 (764)
T PHA02716        190 VDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIY  269 (764)
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHH
Confidence            44567777777777777778899999999999985  5899999999999999999999999975               


Q ss_pred             ----------------------HHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH--cCCHHHHHHHHHCCCCCCCC-
Q 027950           94 ----------------------ACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY--YGNVEVYNILKARGAKVPKT-  148 (216)
Q Consensus        94 ----------------------~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~--~g~~~~~~~Ll~~g~~~~~~-  148 (216)
                                            +..|+.+++++|++.|++++.+|..|+||||+|+.  .++.+++++|+++|+++|.. 
T Consensus       270 ie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD  349 (764)
T PHA02716        270 IESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD  349 (764)
T ss_pred             HHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCC
Confidence                                  34577899999999999999999999999999864  45789999999999999765 


Q ss_pred             --CCCchhcccCCC----------CcccccchhhHHHHhhcCCC---CCCCcchHHH----------HHHHHHHHcCC
Q 027950          149 --KRTPMTVANPRE----------VPEYELNPLELQVRKADGIT---KAWPVPLIFV----------HYVILLRQAGS  201 (216)
Q Consensus       149 --g~t~l~~a~~~~----------~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~----------~~~~~l~~~g~  201 (216)
                        |.||||+|+...          ....-.+++++|+..|++++   ..+.||++.+          .++.+|+..|+
T Consensus       350 ~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~  427 (764)
T PHA02716        350 NIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKV  427 (764)
T ss_pred             CCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcc
Confidence              999999875310          00113456899999999986   6788999731          35667777654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.88  E-value=4.3e-22  Score=168.32  Aligned_cols=171  Identities=22%  Similarity=0.174  Sum_probs=129.2

Q ss_pred             CCcccccCCCCCCCCCCCCccchHHHHHHHHcC-CHHHHHHHHhCCCCCCccCCCCchHHHHHH--HcCCHHHHHHHHhC
Q 027950           32 SLDPIRRSPVQDELTVPENLDSTMQLLFMACSG-DVKGVEDLLNEGIDVNSIDLDGRTALHIAA--CEGHVEVVKLLLSK  108 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~--~~~~~~~~~~Ll~~  108 (216)
                      ..+.++.++..+......+..|.||||+|+..| +.+++++|+++|++++..+..|.||||+|+  ..++.+++++|++.
T Consensus        62 ~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~  141 (471)
T PHA03095         62 VKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK  141 (471)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHc
Confidence            667677777777777777778999999999999 599999999999999999999999999999  45678999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHCCCCCCCC---CCCchhcccCC--CCcccc----------------
Q 027950          109 KANIDARDRWGSTAAADAKYYG--NVEVYNILKARGAKVPKT---KRTPMTVANPR--EVPEYE----------------  165 (216)
Q Consensus       109 g~~~~~~~~~g~t~L~~a~~~g--~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~--~~~~~~----------------  165 (216)
                      |++++..+..|.||||+|+..+  ..+++++|+++|++++..   |.||||.++..  +..++.                
T Consensus       142 gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~  221 (471)
T PHA03095        142 GADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDML  221 (471)
T ss_pred             CCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCC
Confidence            9999999999999999888765  567888888888776433   67777765432  111111                


Q ss_pred             ---------------cchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          166 ---------------LNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       166 ---------------~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                                     ...++.++..|++++   ..+.||+|.|      .++.+|++.|+.
T Consensus       222 g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad  282 (471)
T PHA03095        222 GNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGAD  282 (471)
T ss_pred             CCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                           123445666777665   4567777777      466777777765

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2e-21  Score=147.30  Aligned_cols=148  Identities=15%  Similarity=0.145  Sum_probs=123.5

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcC--CHHHHHHHHhCCCCCCCCC-CCCCCHHHHH
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEG--HVEVVKLLLSKKANIDARD-RWGSTAAADA  126 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~a  126 (216)
                      ...+.+|||+|+..|+.+.|+.|++.   ++..+..|.||||+|+..+  +.+++++|++.|++++.++ ..|+||||+|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a   94 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHY   94 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHH
Confidence            34568999999999999999999975   5667889999999999854  8999999999999999997 4899999998


Q ss_pred             HHc---CCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHH-H------
Q 027950          127 KYY---GNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIF-V------  190 (216)
Q Consensus       127 ~~~---g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~-~------  190 (216)
                      +..   ++.+++++|+++|+++|..   |.||||.|+....  ...+++++|+..|++++   ..+.||+|. +      
T Consensus        95 ~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~--~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~  172 (209)
T PHA02859         95 LSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFN--VRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDK  172 (209)
T ss_pred             HHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhcc--CCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCH
Confidence            764   4789999999999999765   9999999865321  12346889999999986   567899984 3      


Q ss_pred             HHHHHHHHcCCC
Q 027950          191 HYVILLRQAGSF  202 (216)
Q Consensus       191 ~~~~~l~~~g~~  202 (216)
                      .++.+|++.|+.
T Consensus       173 ~iv~~Ll~~Gad  184 (209)
T PHA02859        173 KIFDFLTSLGID  184 (209)
T ss_pred             HHHHHHHHcCCC
Confidence            468889998875

>PHA02946 ankyin-like protein; Provisional

Probab=99.88  E-value=8.2e-22  Score=164.95  Aligned_cols=176  Identities=14%  Similarity=0.185  Sum_probs=142.3

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcC--CHHHHHHHHhCCCCCCc-cCCCCchHHHHHHHcCC
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSG--DVKGVEDLLNEGIDVNS-IDLDGRTALHIAACEGH   98 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g--~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~a~~~~~   98 (216)
                      .++..+...+..+.++.++..+......+..|.||||+|+..+  ..+++++|+++|++++. .+..|.|||| |+..++
T Consensus        74 TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~  152 (446)
T PHA02946         74 YPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPS  152 (446)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCC
Confidence            4445556677788888877777666677889999999998865  48999999999999995 5889999997 666799


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHH
Q 027950           99 VEVVKLLLSKKANIDARDRWGSTAAADAKYYGN--VEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQV  173 (216)
Q Consensus        99 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~--~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~  173 (216)
                      .+++++|++.|++++..|..|+||||+|+..++  .+++++|+++|++++..   |.||||+|+..+...  ..++++++
T Consensus       153 ~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~--~~iv~lLl  230 (446)
T PHA02946        153 ERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN--VDIINLLL  230 (446)
T ss_pred             hHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCc--HHHHHHHH
Confidence            999999999999999999999999999987654  68999999999999764   999999999765222  12455666


Q ss_pred             HhhcCCC---CCCCcchHHH-------HHHHHHHHcCC
Q 027950          174 RKADGIT---KAWPVPLIFV-------HYVILLRQAGS  201 (216)
Q Consensus       174 ~~g~~~~---~~~~~~l~~~-------~~~~~l~~~g~  201 (216)
                      . |++++   ..+.||++.|       .++++|+..|.
T Consensus       231 ~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~  267 (446)
T PHA02946        231 P-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSN  267 (446)
T ss_pred             c-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCC
Confidence            4 77776   5688999887       35667777765

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.87  E-value=7.3e-22  Score=167.83  Aligned_cols=125  Identities=18%  Similarity=0.123  Sum_probs=68.0

Q ss_pred             CcccccCCCCCCCCCCCCccchHHHHHHHH------cCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHc---CCHHHHH
Q 027950           33 LDPIRRSPVQDELTVPENLDSTMQLLFMAC------SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACE---GHVEVVK  103 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~------~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~---~~~~~~~  103 (216)
                      .+.++.++..+...... ..+.||||.|+.      .++.+++++|+++|+++|.++..|.||||.|+..   ++.++++
T Consensus        50 ~~iv~~Ll~~GAdvn~~-~~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~  128 (494)
T PHA02989         50 IKIVKLLIDNGADVNYK-GYIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLR  128 (494)
T ss_pred             hHHHHHHHHcCCCccCC-CCCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHH
Confidence            44444444444332222 234566665543      2455666666666666666666666666655433   4556666


Q ss_pred             HHHhCCCCC-CCCCCCCCCHHHHHHHc--CCHHHHHHHHHCCCCCCC----CCCCchhcccC
Q 027950          104 LLLSKKANI-DARDRWGSTAAADAKYY--GNVEVYNILKARGAKVPK----TKRTPMTVANP  158 (216)
Q Consensus       104 ~Ll~~g~~~-~~~~~~g~t~L~~a~~~--g~~~~~~~Ll~~g~~~~~----~g~t~l~~a~~  158 (216)
                      +|+++|+++ +..+..|.||||+|+..  ++.+++++|+++|++++.    .|.||||+|+.
T Consensus       129 ~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~  190 (494)
T PHA02989        129 FLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLR  190 (494)
T ss_pred             HHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHh
Confidence            666666666 55566666666665443  355666666666666544    15666665543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.3e-21  Score=166.15  Aligned_cols=167  Identities=17%  Similarity=0.199  Sum_probs=140.2

Q ss_pred             CCcccccCCCCCCCCCCCCccchHHHHHHHHcC---CHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCC---HHHHHHH
Q 027950           32 SLDPIRRSPVQDELTVPENLDSTMQLLFMACSG---DVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH---VEVVKLL  105 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g---~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~L  105 (216)
                      ..+.++.++..+......+..|.||||+|+..+   +.+++++|+++|++++..+..|.||||+|+..++   .+++++|
T Consensus        88 ~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~L  167 (489)
T PHA02798         88 MLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLL  167 (489)
T ss_pred             HHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHH
Confidence            356666667777776777888999999999875   7899999999999999999999999999999987   9999999


Q ss_pred             HhCCCCCCCCC-CCCCCHHHHHHHcC----CHHHHHHHHHCCCCCCC---------------------------------
Q 027950          106 LSKKANIDARD-RWGSTAAADAKYYG----NVEVYNILKARGAKVPK---------------------------------  147 (216)
Q Consensus       106 l~~g~~~~~~~-~~g~t~L~~a~~~g----~~~~~~~Ll~~g~~~~~---------------------------------  147 (216)
                      ++.|++++..+ ..|.||||.+...+    +.+++++|+++|++++.                                 
T Consensus       168 l~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~  247 (489)
T PHA02798        168 LEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFS  247 (489)
T ss_pred             HHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHh
Confidence            99999999885 57899999987654    78899999988875432                                 


Q ss_pred             ---------CCCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          148 ---------TKRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       148 ---------~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                               .|.||||+|+..+..+    .+++|++.|++++   ..+.||++.|      .++..+++.+..
T Consensus       248 ~~dvN~~d~~G~TPL~~A~~~~~~~----~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~  316 (489)
T PHA02798        248 YIDINQVDELGFNPLYYSVSHNNRK----IFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPN  316 (489)
T ss_pred             cCCCCCcCcCCccHHHHHHHcCcHH----HHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCC
Confidence                     2899999999887554    5889999999987   5688999888      567777777754

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.4e-21  Score=166.04  Aligned_cols=105  Identities=23%  Similarity=0.203  Sum_probs=51.5

Q ss_pred             cchHHHHHHHHc--CCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcC------CHHHHHHHHhCCCCCCCCCCCCCCHH
Q 027950           52 DSTMQLLFMACS--GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEG------HVEVVKLLLSKKANIDARDRWGSTAA  123 (216)
Q Consensus        52 ~~~t~L~~a~~~--g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~------~~~~~~~Ll~~g~~~~~~~~~g~t~L  123 (216)
                      .|.|++|.++..  ++.++|++|+++|+++|.++ .+.||||.|+..+      +.+++++|+++|++++.++..|.|||
T Consensus        34 ~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL  112 (494)
T PHA02989         34 RGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPI  112 (494)
T ss_pred             CCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            344554433322  24555555555555555443 3455555554322      23455555555555555555555555


Q ss_pred             HHHHHc---CCHHHHHHHHHCCCCC-CC---CCCCchhccc
Q 027950          124 ADAKYY---GNVEVYNILKARGAKV-PK---TKRTPMTVAN  157 (216)
Q Consensus       124 ~~a~~~---g~~~~~~~Ll~~g~~~-~~---~g~t~l~~a~  157 (216)
                      |.|+..   |+.+++++|+++|+++ +.   .|.||||+|+
T Consensus       113 ~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~  153 (494)
T PHA02989        113 VCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYL  153 (494)
T ss_pred             HHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHH
Confidence            554433   3455555555555555 22   2555555543

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=2.5e-21  Score=173.10  Aligned_cols=151  Identities=17%  Similarity=0.142  Sum_probs=96.4

Q ss_pred             cccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHH
Q 027950           25 FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKL  104 (216)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  104 (216)
                      +..+..|+.+.++.++..+......+..|.||||+|+..|+.++++.|+++|+++|.+|..|.||||+|+..|+.+++++
T Consensus       530 ~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~  609 (823)
T PLN03192        530 LTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRI  609 (823)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHH
Confidence            44445566666666555555555556666666666666666666666666666666666666666666666666666666


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCCC
Q 027950          105 LLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITK  181 (216)
Q Consensus       105 Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~  181 (216)
                      |++.++..+.  ..+.++||.|+..|+.+++++|+++|+++|..   |.||||+|+..+..+    ++++|+.+|++++.
T Consensus       610 L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~----iv~~Ll~~GAdv~~  683 (823)
T PLN03192        610 LYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVD----MVRLLIMNGADVDK  683 (823)
T ss_pred             HHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH----HHHHHHHcCCCCCC
Confidence            6665544332  23446667777777777777777777776544   777777776666433    46666677777653

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2e-21  Score=171.00  Aligned_cols=163  Identities=25%  Similarity=0.271  Sum_probs=110.0

Q ss_pred             ccCCCCCCCCCCCCccchHHHHHHHHcC-CHHHHHHHHhCCCCCCccCCCCchHHHHHHHc-CCHHHHHHHHhCCCCCCC
Q 027950           37 RRSPVQDELTVPENLDSTMQLLFMACSG-DVKGVEDLLNEGIDVNSIDLDGRTALHIAACE-GHVEVVKLLLSKKANIDA  114 (216)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~t~L~~a~~~g-~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~-~~~~~~~~Ll~~g~~~~~  114 (216)
                      ..+...+......+..|.||||+|+..| ..+.++.|+..|++++..+..|.||||+|+.. ++.+++++|++.|++++.
T Consensus       291 ~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~  370 (682)
T PHA02876        291 PKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNA  370 (682)
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCcc
Confidence            3334444444455667788888888777 47777777777777777777777777777764 456777777777777777


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchH
Q 027950          115 RDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLI  188 (216)
Q Consensus       115 ~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~  188 (216)
                      +|..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+...   ..+++++..|++++   ..+.||++
T Consensus       371 ~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~---~~vk~Ll~~gadin~~d~~G~TpLh  447 (682)
T PHA02876        371 RDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPY---MSVKTLIDRGANVNSKNKDLSTPLH  447 (682)
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHH---HHHHHHHhCCCCCCcCCCCCChHHH
Confidence            7777777777777777777777777777776543   677777775433221   13456666776664   45667776


Q ss_pred             HH-------HHHHHHHHcCCC
Q 027950          189 FV-------HYVILLRQAGSF  202 (216)
Q Consensus       189 ~~-------~~~~~l~~~g~~  202 (216)
                      .|       .++.+|++.|+.
T Consensus       448 ~Aa~~~~~~~iv~lLl~~Gad  468 (682)
T PHA02876        448 YACKKNCKLDVIEMLLDNGAD  468 (682)
T ss_pred             HHHHhCCcHHHHHHHHHCCCC
Confidence            66       355666666654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=1.1e-21  Score=175.40  Aligned_cols=151  Identities=25%  Similarity=0.282  Sum_probs=137.8

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 027950           49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY  128 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~  128 (216)
                      .+....++|+.||..|+.+.++.|++.|+++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus       521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~  600 (823)
T PLN03192        521 DDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS  600 (823)
T ss_pred             CCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence            44557799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCC-CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHH
Q 027950          129 YGNVEVYNILKARGAKVPKT-KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQ  198 (216)
Q Consensus       129 ~g~~~~~~~Ll~~g~~~~~~-g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~  198 (216)
                      .|+.+++++|++.++..+.. +.++||.|+..+..+    +++.+++.|++++   ..+.||+|.|      .++++|++
T Consensus       601 ~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~----~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~  676 (823)
T PLN03192        601 AKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLT----AMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIM  676 (823)
T ss_pred             hCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHH
Confidence            99999999999998877655 889999999988655    5788899999986   6788999998      78999999


Q ss_pred             cCCCC
Q 027950          199 AGSFN  203 (216)
Q Consensus       199 ~g~~~  203 (216)
                      .|+..
T Consensus       677 ~GAdv  681 (823)
T PLN03192        677 NGADV  681 (823)
T ss_pred             cCCCC
Confidence            99863

>PHA02795 ankyrin-like protein; Provisional

Probab=99.86  E-value=2.3e-21  Score=158.70  Aligned_cols=167  Identities=12%  Similarity=0.031  Sum_probs=136.1

Q ss_pred             CCCCcccccCCCCCCCCC------CCCccchHHHHHHHH--cCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           30 QSSLDPIRRSPVQDELTV------PENLDSTMQLLFMAC--SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~------~~~~~~~t~L~~a~~--~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      .+..+.++.+...+....      .....++|+||+++.  .|+.++|++|+++|++++..  .+.||||.|+..++.++
T Consensus        87 ~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eI  164 (437)
T PHA02795         87 ITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSV  164 (437)
T ss_pred             cchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHH
Confidence            344444444444544433      456679999999999  89999999999999999874  44799999999999999


Q ss_pred             HHHHHhCCCCCCCCC------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHH
Q 027950          102 VKLLLSKKANIDARD------RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQ  172 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~------~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l  172 (216)
                      +++|+.+|++.....      ..+.+++|.|...++.+++++|+++|+++|.+   |.||||+|+..+..+    .+++|
T Consensus       165 Vk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~e----iVelL  240 (437)
T PHA02795        165 VEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYID----LVSWL  240 (437)
T ss_pred             HHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHH----HHHHH
Confidence            999999998543222      34778999999999999999999999999876   999999999888655    58899


Q ss_pred             HHhhcCCC---CCCCcchHHH--------------HHHHHHHHcCCC
Q 027950          173 VRKADGIT---KAWPVPLIFV--------------HYVILLRQAGSF  202 (216)
Q Consensus       173 ~~~g~~~~---~~~~~~l~~~--------------~~~~~l~~~g~~  202 (216)
                      +..|++++   ..+.||+|.|              .++.+|++.|+.
T Consensus       241 L~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gad  287 (437)
T PHA02795        241 LENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLS  287 (437)
T ss_pred             HHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence            99999986   5688899888              277888888874

>PHA02917 ankyrin-like protein; Provisional

Probab=99.86  E-value=2.6e-21  Score=168.07  Aligned_cols=168  Identities=13%  Similarity=0.054  Sum_probs=106.7

Q ss_pred             CCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHH----HHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHH
Q 027950           31 SSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVK----GVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL  106 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  106 (216)
                      +..+.++.++..+......+..|.||||+|+..|+.+    +++.|++.+...+..+  ..++++.|+..++.+++++|+
T Consensus        46 ~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll  123 (661)
T PHA02917         46 NNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLV  123 (661)
T ss_pred             CcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHH
Confidence            3444444444444444444444555555555544422    2233443322222211  113344444555778899999


Q ss_pred             hCCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHHCCCCCCCC------C-----------CCchhcccCCCC------
Q 027950          107 SKKANIDARDRWGSTAAADAK--YYGNVEVYNILKARGAKVPKT------K-----------RTPMTVANPREV------  161 (216)
Q Consensus       107 ~~g~~~~~~~~~g~t~L~~a~--~~g~~~~~~~Ll~~g~~~~~~------g-----------~t~l~~a~~~~~------  161 (216)
                      +.|++++.+|..|+||||.++  ..|+.+++++|+++|+++|..      |           .||||+|+....      
T Consensus       124 ~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~  203 (661)
T PHA02917        124 EHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDT  203 (661)
T ss_pred             HcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccc
Confidence            999999999999999999543  568999999999999998643      2           599999875210      


Q ss_pred             -cccccchhhHHHHhhcCCC---CCCCcchHHH--------HHHHHHHHcCC
Q 027950          162 -PEYELNPLELQVRKADGIT---KAWPVPLIFV--------HYVILLRQAGS  201 (216)
Q Consensus       162 -~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~--------~~~~~l~~~g~  201 (216)
                       ..-..+++++|+..|++++   ..+.||+|.|        .++++|.+ |+
T Consensus       204 ~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~  254 (661)
T PHA02917        204 RAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GI  254 (661)
T ss_pred             cccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CC
Confidence             0013456899999999987   5678899888        27777765 54

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=1.2e-22  Score=162.94  Aligned_cols=141  Identities=23%  Similarity=0.324  Sum_probs=126.9

Q ss_pred             ccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHH
Q 027950           24 RFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVK  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~  103 (216)
                      +-..+.-|.++.++.++..+...+.......|||..||..|++++||+|+++|+|++..+..|.|+||+||..|+.++++
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~q  167 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQ  167 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHH
Confidence            34455678899888888888666666666779999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCchhcccCCCCccc
Q 027950          104 LLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK--TKRTPMTVANPREVPEY  164 (216)
Q Consensus       104 ~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~--~g~t~l~~a~~~~~~~~  164 (216)
                      +|++.|+|+|.++..|+|+||.|++.|+.+++++|+.+|+.++.  .|-|||..|...+..++
T Consensus       168 yLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~i  230 (615)
T KOG0508|consen  168 YLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDI  230 (615)
T ss_pred             HHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHH
Confidence            99999999999999999999999999999999999999998754  49999999988776554

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.86  E-value=2.8e-21  Score=170.18  Aligned_cols=167  Identities=23%  Similarity=0.206  Sum_probs=139.9

Q ss_pred             CcccccCCCCCCCCCCCCccchHHHHHHHHc-CCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCC
Q 027950           33 LDPIRRSPVQDELTVPENLDSTMQLLFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN  111 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~-g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~  111 (216)
                      .+.++.+...+......+..|.||||+|+.. ++.++++.|++.|++++.++..|.||||+|+..|+.+++++|+++|++
T Consensus       321 ~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad  400 (682)
T PHA02876        321 TENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD  400 (682)
T ss_pred             HHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            4445555555555666778899999999985 578999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCC
Q 027950          112 IDARDRWGSTAAADAKYYGN-VEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWP  184 (216)
Q Consensus       112 ~~~~~~~g~t~L~~a~~~g~-~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~  184 (216)
                      ++..+..|.||||+|+..++ ..++++|+++|+++|..   |+||||+|+..+.   ...++++|+..|++++   ..+.
T Consensus       401 ~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~---~~~iv~lLl~~Gad~n~~d~~g~  477 (682)
T PHA02876        401 IEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNC---KLDVIEMLLDNGADVNAINIQNQ  477 (682)
T ss_pred             ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCC---cHHHHHHHHHCCCCCCCCCCCCC
Confidence            99999999999999998766 56789999999999765   9999999987652   1235789999999986   5678


Q ss_pred             cchHHH----HHHHHHHHcCCC
Q 027950          185 VPLIFV----HYVILLRQAGSF  202 (216)
Q Consensus       185 ~~l~~~----~~~~~l~~~g~~  202 (216)
                      ||++.|    .++..++..|+.
T Consensus       478 tpl~~a~~~~~~v~~Ll~~~a~  499 (682)
T PHA02876        478 YPLLIALEYHGIVNILLHYGAE  499 (682)
T ss_pred             CHHHHHHHhCCHHHHHHHCCCC
Confidence            888877    356677777764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=1e-20  Score=149.15  Aligned_cols=143  Identities=15%  Similarity=0.042  Sum_probs=115.5

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhCCCCCCccC----CCCchHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHH
Q 027950           53 STMQLLFMACSGDVKGVEDLLNEGIDVNSID----LDGRTALHIAACEGHVEVVKLLLSKKANIDAR-DRWGSTAAADAK  127 (216)
Q Consensus        53 ~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~----~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~a~  127 (216)
                      -.++||.|+..|+.++++.|+++|++++.++    ..|.||||+|+..++.+++++|+++|++++.. +..|.||||+|+
T Consensus        33 ~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         33 IANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISV  112 (300)
T ss_pred             CCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHH
Confidence            3457777778899999999999999999874    58999999999999999999999999999986 467999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCCCCCCcchHHH---HHHHHHHHcCC
Q 027950          128 YYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITKAWPVPLIFV---HYVILLRQAGS  201 (216)
Q Consensus       128 ~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~---~~~~~l~~~g~  201 (216)
                      ..|+.+++++|+++|++++..   |.||||+|+..+....    ...  ..|...+....+|.+.+   .++++|...++
T Consensus       113 ~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~n~ei~~~Lish~v  186 (300)
T PHA02884        113 LHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFL----AFM--ICDNEISNFYKHPKKILINFDILKILVSHFI  186 (300)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhH----HHH--hcCCcccccccChhhhhccHHHHHHHHHHHH
Confidence            999999999999999999765   9999999976543332    222  23555666667777643   44555555554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.86  E-value=4.3e-21  Score=140.33  Aligned_cols=160  Identities=22%  Similarity=0.185  Sum_probs=137.7

Q ss_pred             cccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHH
Q 027950           25 FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKL  104 (216)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  104 (216)
                      .-++..++....+..+..+....+.+.-+++|+.+++...+.+.+..+.+.  .+|..|..|.|||+||+..|++++|++
T Consensus       101 ~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~G~i~vV~f  178 (296)
T KOG0502|consen  101 LVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAKGHIPVVQF  178 (296)
T ss_pred             hhcCCCCCcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhcCchHHHHH
Confidence            444556667766777777777777788899999999988888887766654  578899999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC-
Q 027950          105 LLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT-  180 (216)
Q Consensus       105 Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~-  180 (216)
                      |++.|++++.......++|+.|++.|+.+++++|+.++.++|..   |.|||-+|.+.++.+    +++.|+..|++++ 
T Consensus       179 LL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvk----cve~Ll~sGAd~t~  254 (296)
T KOG0502|consen  179 LLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVK----CVESLLNSGADVTQ  254 (296)
T ss_pred             HHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHH----HHHHHHhcCCCccc
Confidence            99999999999999999999999999999999999999999765   999999999998766    4889999999997 


Q ss_pred             --CCCCcchHHH
Q 027950          181 --KAWPVPLIFV  190 (216)
Q Consensus       181 --~~~~~~l~~~  190 (216)
                        ..+++++..|
T Consensus       255 e~dsGy~~mdlA  266 (296)
T KOG0502|consen  255 EDDSGYWIMDLA  266 (296)
T ss_pred             ccccCCcHHHHH
Confidence              4566666665

>PHA02741 hypothetical protein; Provisional

Probab=99.86  E-value=8e-21  Score=139.47  Aligned_cols=127  Identities=19%  Similarity=0.197  Sum_probs=108.1

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHh------CCCCCCccCCCCchHHHHHHHcCC----HHHHHHHHhCCCCCCCCCC
Q 027950           48 PENLDSTMQLLFMACSGDVKGVEDLLN------EGIDVNSIDLDGRTALHIAACEGH----VEVVKLLLSKKANIDARDR  117 (216)
Q Consensus        48 ~~~~~~~t~L~~a~~~g~~~~v~~Ll~------~~~~~~~~~~~g~t~L~~a~~~~~----~~~~~~Ll~~g~~~~~~~~  117 (216)
                      ..+..|.|+||+|+..|+.++++.|+.      .|++++.+|..|.||||+|+..|+    .+++++|+..|++++.++.
T Consensus        16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~   95 (169)
T PHA02741         16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEM   95 (169)
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCc
Confidence            345679999999999999999999854      357889999999999999999998    5889999999999999985


Q ss_pred             -CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcC
Q 027950          118 -WGSTAAADAKYYGNVEVYNILKA-RGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       118 -~g~t~L~~a~~~g~~~~~~~Ll~-~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                       .|+||||+|+..++.+++++|++ .|++++..   |+|||+.|+..+..++    ++++...++.
T Consensus        96 ~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~i----v~~L~~~~~~  157 (169)
T PHA02741         96 LEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAM----MQILREIVAT  157 (169)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHH----HHHHHHHHHH
Confidence             89999999999999999999997 59998654   9999999998775443    4555554433

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=6.1e-21  Score=139.63  Aligned_cols=130  Identities=19%  Similarity=0.211  Sum_probs=106.5

Q ss_pred             CccchHHHHHHHHcCCH----HHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH---HHHHHhCCCCCCCCC-CCCCC
Q 027950           50 NLDSTMQLLFMACSGDV----KGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV---VKLLLSKKANIDARD-RWGST  121 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~---~~~Ll~~g~~~~~~~-~~g~t  121 (216)
                      +.++.+++|+||..|+.    +++++|++.|++++..|..|.||||+|+..|+.+.   +++|+..|++++.++ ..|.|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~T   96 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNT   96 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCc
Confidence            44567889999999987    55556778888888888899999999998887654   789999999999988 48999


Q ss_pred             HHHHHHHcCCHHHHHHHHH-CCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCCCCC
Q 027950          122 AAADAKYYGNVEVYNILKA-RGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITKAW  183 (216)
Q Consensus       122 ~L~~a~~~g~~~~~~~Ll~-~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~~~  183 (216)
                      |||+|+..|+.+++++|++ .|++++..   |.||||+|+..+..+    ++++|+..|++++...
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~----iv~~Ll~~ga~~~~~~  158 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRR----MMEILRANGAVCDDPL  158 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcc
Confidence            9999999999999999995 79888654   899999998876543    5778888888876443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=2.5e-20  Score=157.94  Aligned_cols=174  Identities=22%  Similarity=0.204  Sum_probs=141.1

Q ss_pred             cccccCCCCcccccCCC-----CCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCC---------------CCccCC
Q 027950           25 FSFGRQSSLDPIRRSPV-----QDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGID---------------VNSIDL   84 (216)
Q Consensus        25 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~---------------~~~~~~   84 (216)
                      ...++.++.+-++-.+.     +..-....+..+.+|||.|+..|+.++++.+|+.|..               +|..|.
T Consensus       192 H~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~  271 (929)
T KOG0510|consen  192 HEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDN  271 (929)
T ss_pred             HHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccc
Confidence            44566777666655544     3334445577789999999999999999999987632               234578


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCC-C---CCCCCchhcccCC
Q 027950           85 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA-RGAKV-P---KTKRTPMTVANPR  159 (216)
Q Consensus        85 ~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~-~g~~~-~---~~g~t~l~~a~~~  159 (216)
                      +|.||||+|++.|+.++++.|+..|++++.++.++.||||.|++.|+.++++-|++ .+..+ |   ..|.||||+|+..
T Consensus       272 dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~  351 (929)
T KOG0510|consen  272 DGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKS  351 (929)
T ss_pred             cCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhc
Confidence            89999999999999999999999999999999999999999999999999999998 44433 3   3399999999987


Q ss_pred             CCcccccchhhHHHHhhcCCC------CCCCcchHHH------HHHHHHHHcCCC
Q 027950          160 EVPEYELNPLELQVRKADGIT------KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       160 ~~~~~~~~~~~~l~~~g~~~~------~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      ++..    .+++|+.+|+...      .++.|++|.|      +++.+|+..|+.
T Consensus       352 gH~~----v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~  402 (929)
T KOG0510|consen  352 GHDR----VVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGAD  402 (929)
T ss_pred             CHHH----HHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCc
Confidence            7554    4888999998754      5789999998      788999999885

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.83  E-value=2.5e-20  Score=136.39  Aligned_cols=127  Identities=23%  Similarity=0.196  Sum_probs=105.9

Q ss_pred             ccccccccCCCCcccc----cCCCCCCCCCCCCccchHHHHHHHHcCCHHH---HHHHHhCCCCCCccC-CCCchHHHHH
Q 027950           22 NMRFSFGRQSSLDPIR----RSPVQDELTVPENLDSTMQLLFMACSGDVKG---VEDLLNEGIDVNSID-LDGRTALHIA   93 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~---v~~Ll~~~~~~~~~~-~~g~t~L~~a   93 (216)
                      ...+...+.++.+.+.    .+...+......+..|.||||+|+..|+.+.   +++|++.|+++|.++ ..|.||||+|
T Consensus        22 ~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A  101 (166)
T PHA02743         22 NTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIA  101 (166)
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHH
Confidence            3445555666664332    3334444445567789999999999987654   789999999999988 5899999999


Q ss_pred             HHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 027950           94 ACEGHVEVVKLLLS-KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT  148 (216)
Q Consensus        94 ~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~  148 (216)
                      +..++.+++++|+. .|++++.++..|+||||+|+..++.+++++|+++|++++..
T Consensus       102 ~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~  157 (166)
T PHA02743        102 ASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP  157 (166)
T ss_pred             HHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            99999999999995 79999999999999999999999999999999999999765

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=3.3e-20  Score=130.99  Aligned_cols=136  Identities=30%  Similarity=0.302  Sum_probs=113.8

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhCCCC-CCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q 027950           52 DSTMQLLFMACSGDVKGVEDLLNEGID-VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYG  130 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g  130 (216)
                      +....+.+|+..+....|+.||+..++ +|.+|..|.||||.|+.+|+.++++.|+.+|++++.++..||||||-||.=+
T Consensus        62 dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   62 DPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence            344568899999999999999987665 8999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHH-HhhcCCC---CCCCcchHHH
Q 027950          131 NVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQV-RKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       131 ~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~-~~g~~~~---~~~~~~l~~~  190 (216)
                      +.+++.+|+++|++||+.   ..||||+|+....+..   .+.+|+ .++..+.   ....||+..|
T Consensus       142 N~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~---t~~~Ll~dryi~pg~~nn~eeta~~iA  205 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRD---TLELLLHDRYIHPGLKNNLEETAFDIA  205 (228)
T ss_pred             chhHHHHHHhccCcccccccccchhhHHhhcccchHH---HHHHHhhccccChhhhcCccchHHHHH
Confidence            999999999999999987   8999999987654332   233333 4444443   4566676666

>PHA02917 ankyrin-like protein; Provisional

Probab=99.83  E-value=9.8e-20  Score=158.33  Aligned_cols=146  Identities=16%  Similarity=0.143  Sum_probs=116.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHH--HcCCHHHHHHHHhCCCCCCCCCC---CC---------
Q 027950           54 TMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAA--CEGHVEVVKLLLSKKANIDARDR---WG---------  119 (216)
Q Consensus        54 ~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~--~~~~~~~~~~Ll~~g~~~~~~~~---~g---------  119 (216)
                      .+++++|+..|+.++|++|+++|+++|.+|..|.||||.++  ..|+.+++++|+++|++++..+.   .|         
T Consensus       104 ~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        104 NIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             chHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccc
Confidence            36778899999999999999999999999999999999654  56899999999999999986653   23         


Q ss_pred             --CCHHHHHHH-----------cCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---
Q 027950          120 --STAAADAKY-----------YGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---  180 (216)
Q Consensus       120 --~t~L~~a~~-----------~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---  180 (216)
                        .||||+|+.           .++.+++++|+++|+++|..   |.||||+|+..+..+  .+++++|+. |++.+   
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~--~eivk~Li~-g~d~~~~~  260 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHID--IDIVKLLMK-GIDNTAYS  260 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCc--HHHHHHHHh-CCcccccc
Confidence              599999986           45889999999999999865   999999999887543  245777764 76553   


Q ss_pred             ----CCCCcchHHH---------------HHHHHHHHcCCC
Q 027950          181 ----KAWPVPLIFV---------------HYVILLRQAGSF  202 (216)
Q Consensus       181 ----~~~~~~l~~~---------------~~~~~l~~~g~~  202 (216)
                          ..+.++.+.+               .++++|++.|+.
T Consensus       261 ~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~  301 (661)
T PHA02917        261 YIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKP  301 (661)
T ss_pred             cccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCC
Confidence                1223433333               347888899975

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.83  E-value=1e-19  Score=119.43  Aligned_cols=88  Identities=41%  Similarity=0.567  Sum_probs=82.0

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 027950           57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYN  136 (216)
Q Consensus        57 L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~  136 (216)
                      ||+|+..|+.++++.|++.+.+++.    |.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999888766    889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHCCCCCCCC
Q 027950          137 ILKARGAKVPKT  148 (216)
Q Consensus       137 ~Ll~~g~~~~~~  148 (216)
                      +|+++|+++|.+
T Consensus        77 ~Ll~~g~~~~~~   88 (89)
T PF12796_consen   77 LLLEHGADVNIR   88 (89)
T ss_dssp             HHHHTTT-TTSS
T ss_pred             HHHHcCCCCCCc
Confidence            999999999764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02795 ankyrin-like protein; Provisional

Probab=99.82  E-value=3.9e-20  Score=151.57  Aligned_cols=155  Identities=21%  Similarity=0.152  Sum_probs=129.5

Q ss_pred             CCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccC------CCCchHHHHHHHcCCHHHHH
Q 027950           30 QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSID------LDGRTALHIAACEGHVEVVK  103 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~------~~g~t~L~~a~~~~~~~~~~  103 (216)
                      .+..+.++.++..+.....  .++.||+|+|+..++.+++++|+++|++.+...      ..+.+++|.|...++.++++
T Consensus       128 ~n~~eiV~~LI~~GADIn~--~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve  205 (437)
T PHA02795        128 YVEIDIVDFMVDHGAVIYK--IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYK  205 (437)
T ss_pred             CCCHHHHHHHHHCCCCCCC--CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHH
Confidence            5778888887777766543  345899999999999999999999997532221      34778999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCc----ccccchhhHHHHhh
Q 027950          104 LLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVP----EYELNPLELQVRKA  176 (216)
Q Consensus       104 ~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~----~~~~~~~~~l~~~g  176 (216)
                      +|+.+|++++.+|..|.||||+|+..|+.+++++|+++|+++|..   |.||||+|+..+..    .--.+++++|+..|
T Consensus       206 ~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g  285 (437)
T PHA02795        206 LCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP  285 (437)
T ss_pred             HHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999776   99999999877632    11235688999999


Q ss_pred             cCCCCCCCcc
Q 027950          177 DGITKAWPVP  186 (216)
Q Consensus       177 ~~~~~~~~~~  186 (216)
                      ++++....++
T Consensus       286 adI~~~~~~~  295 (437)
T PHA02795        286 LSIDCIKLAI  295 (437)
T ss_pred             CCCCchhHHh
Confidence            9998655554

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=3e-20  Score=157.42  Aligned_cols=162  Identities=20%  Similarity=0.235  Sum_probs=134.0

Q ss_pred             CCccccccccccccCCCCcccccCCCCCC---------------CCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCC
Q 027950           16 FDPRRNNMRFSFGRQSSLDPIRRSPVQDE---------------LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVN   80 (216)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~   80 (216)
                      +++.+.+++......|.++.++..+..+.               .....+.+|.||||+||..|+.+++..|+..|++++
T Consensus       221 ~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~  300 (929)
T KOG0510|consen  221 DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASIN  300 (929)
T ss_pred             ccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccc
Confidence            34444555555555666655544332221               234557889999999999999999999999999999


Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHh-CC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCc
Q 027950           81 SIDLDGRTALHIAACEGHVEVVKLLLS-KK-ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK------TKRTP  152 (216)
Q Consensus        81 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~g-~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~------~g~t~  152 (216)
                      .++.++.||||.|+..|++.+|+.|++ .| ...+..|..|+||||.|+.+|+..++++|+++|+....      .|.||
T Consensus       301 ~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~Ta  380 (929)
T KOG0510|consen  301 SKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTA  380 (929)
T ss_pred             ccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchh
Confidence            999999999999999999999999998 44 56778889999999999999999999999999998752      39999


Q ss_pred             hhcccCCCCcccccchhhHHHHhhcCCCC
Q 027950          153 MTVANPREVPEYELNPLELQVRKADGITK  181 (216)
Q Consensus       153 l~~a~~~~~~~~~~~~~~~l~~~g~~~~~  181 (216)
                      ||.|+..+.+.    .++.++..|++++.
T Consensus       381 LH~Aa~~g~~~----av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  381 LHLAAKYGNTS----AVQKLISHGADIGV  405 (929)
T ss_pred             hhHHHHhccHH----HHHHHHHcCCceee
Confidence            99999998666    48899999999953

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=3.3e-20  Score=134.26  Aligned_cols=131  Identities=22%  Similarity=0.301  Sum_probs=101.4

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhCCCC-----CCccCCCCchHHHHHHHcCCHH---HHHHHHhCCCCCCCCCC
Q 027950           46 TVPENLDSTMQLLFMACSGDVKGVEDLLNEGID-----VNSIDLDGRTALHIAACEGHVE---VVKLLLSKKANIDARDR  117 (216)
Q Consensus        46 ~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~a~~~~~~~---~~~~Ll~~g~~~~~~~~  117 (216)
                      ....+..|.||||+|+..|+.+.+........+     ++..+..|.||||+|+..|+.+   ++++|++.|++++.++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~   89 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER   89 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence            344567799999999999984322211111111     3345788999999999998874   68899999999999984


Q ss_pred             -CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC
Q 027950          118 -WGSTAAADAKYYGNVEVYNILKA-RGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT  180 (216)
Q Consensus       118 -~g~t~L~~a~~~g~~~~~~~Ll~-~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~  180 (216)
                       .|+||||+|+..|+.+++++|++ .|++++..   |.||||+|+..+..+    ++++++..|++.+
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~----i~~~Ll~~ga~~~  153 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAK----MMNILRAKGAQCK  153 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCC
Confidence             89999999999999999999997 48998654   999999999877544    4677788887654

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.82  E-value=1.8e-20  Score=137.06  Aligned_cols=121  Identities=23%  Similarity=0.244  Sum_probs=113.0

Q ss_pred             CCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC
Q 027950           42 QDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST  121 (216)
Q Consensus        42 ~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  121 (216)
                      .......++..|.|||+||+..|++++|++||+.|++++.......++|.+|++.|-.++|++|+.++.|+|..|.+|-|
T Consensus       149 ~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgT  228 (296)
T KOG0502|consen  149 VNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGT  228 (296)
T ss_pred             hhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCc
Confidence            44555677889999999999999999999999999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCc
Q 027950          122 AAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVP  162 (216)
Q Consensus       122 ~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~  162 (216)
                      ||-+|++.|+..|++.|++.|++++..   |.+++..|...++.
T Consensus       229 pLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  229 PLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             eeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH
Confidence            999999999999999999999999765   99999999888765

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.79  E-value=5.7e-19  Score=157.01  Aligned_cols=159  Identities=23%  Similarity=0.244  Sum_probs=128.6

Q ss_pred             ccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHh
Q 027950           28 GRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS  107 (216)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  107 (216)
                      +..+..+....+.....+.......+.+++|.+...++..+++.++++|++++.++..|.||||.|+..|+.++|++|++
T Consensus       482 aq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe  561 (1143)
T KOG4177|consen  482 AQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLE  561 (1143)
T ss_pred             hccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhh
Confidence            33455555555555555666667778899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcC-----C
Q 027950          108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADG-----I  179 (216)
Q Consensus       108 ~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~-----~  179 (216)
                      +|++++.++..|+||||.|+..|+.+|+.+|+++|+++|..   |.|||++|.+.+..+    .++.+...+..     .
T Consensus       562 ~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~----~~k~l~~~~~~~~~~~~  637 (1143)
T KOG4177|consen  562 HGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLS----VVKLLKVVTATPAATDP  637 (1143)
T ss_pred             CCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccc----hhhHHHhccCccccccc
Confidence            99999999999999999999999999999999999999775   999999998877554    35555566655     2


Q ss_pred             ---CCCCCcchHHH
Q 027950          180 ---TKAWPVPLIFV  190 (216)
Q Consensus       180 ---~~~~~~~l~~~  190 (216)
                         +..+.+|..+.
T Consensus       638 ~~e~~~g~~p~~v~  651 (1143)
T KOG4177|consen  638 VKENRKGAVPEDVA  651 (1143)
T ss_pred             hhhhhcccChhhHH
Confidence               24566666555

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=3e-19  Score=135.76  Aligned_cols=112  Identities=34%  Similarity=0.429  Sum_probs=104.4

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 027950           46 TVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD  125 (216)
Q Consensus        46 ~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  125 (216)
                      ....+..|.+||||||+.|+..++..|+.+|+.+|..+....||||+|+..||.++|+.|+.+.+|+|..+..|+|||||
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhy  106 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHY  106 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhh
Confidence            34557779999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCC---CCCCCchhccc
Q 027950          126 AKYYGNVEVYNILKARGAKVP---KTKRTPMTVAN  157 (216)
Q Consensus       126 a~~~g~~~~~~~Ll~~g~~~~---~~g~t~l~~a~  157 (216)
                      ||.-|+..+.+-|+..|+.++   .+|.||+..|-
T Consensus       107 acfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  107 ACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            999999999999999999984   45999998763

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=1.6e-19  Score=140.82  Aligned_cols=140  Identities=23%  Similarity=0.244  Sum_probs=112.6

Q ss_pred             CCCCCccchHHHHHHHHcCCHHHHHHHHhCC-CCCCccCCCCchHHHHHHHc-----CCHHHHHHHHhCCCCCCCCC-CC
Q 027950           46 TVPENLDSTMQLLFMACSGDVKGVEDLLNEG-IDVNSIDLDGRTALHIAACE-----GHVEVVKLLLSKKANIDARD-RW  118 (216)
Q Consensus        46 ~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~a~~~-----~~~~~~~~Ll~~g~~~~~~~-~~  118 (216)
                      .+..+.+|+|+|||++.++++++|+.||+.| +++|..+.-|+||+++++..     .+..+|..|...| ++|++. ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            3456788999999999999999999999987 68999999999999988754     3566777777664 677665 46


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHH-HhhcCC---CCCCCcchHHH
Q 027950          119 GSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQV-RKADGI---TKAWPVPLIFV  190 (216)
Q Consensus       119 g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~-~~g~~~---~~~~~~~l~~~  190 (216)
                      |+|+|++|+.+|+.++++.|+..|+|+|..   |.|+|+.||++++.++    +++|+ ..+++.   +.++.|+++.|
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEi----vklLLA~p~cd~sLtD~DgSTAl~IA  414 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEI----VKLLLAVPSCDISLTDVDGSTALSIA  414 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHH----HHHHhccCcccceeecCCCchhhhhH
Confidence            899999999999999999999999999876   9999999999998775    44444 455665   47788888777

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.78  E-value=7.3e-19  Score=138.68  Aligned_cols=139  Identities=17%  Similarity=0.097  Sum_probs=117.1

Q ss_pred             CccccccccccccCCCCcccccCCCCCCCCCCC----CccchHHHHHHHHcCCHHHHHHHHhCCCCCCcc-CCCCchHHH
Q 027950           17 DPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPE----NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSI-DLDGRTALH   91 (216)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~   91 (216)
                      ...+..+.+.....+..+.++.++..+......    +..|.||||+|+..++.+++++|+++|+++|.. +..|.||||
T Consensus        30 ~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh  109 (300)
T PHA02884         30 KICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLY  109 (300)
T ss_pred             cCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHH
Confidence            334455666667778888888887777655443    357999999999999999999999999999986 467999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCchhccc
Q 027950           92 IAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVAN  157 (216)
Q Consensus        92 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~g~t~l~~a~  157 (216)
                      .|+..++.+++++|+..|++++.+|..|.||||+|++.++.+++.++.  |..++..+.+|.+++.
T Consensus       110 ~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  173 (300)
T PHA02884        110 ISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC--DNEISNFYKHPKKILI  173 (300)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--CCcccccccChhhhhc
Confidence            999999999999999999999999999999999999999888875554  5667777888988764

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.77  E-value=9e-19  Score=155.75  Aligned_cols=149  Identities=30%  Similarity=0.335  Sum_probs=105.6

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  129 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~  129 (216)
                      ..+|.||||.|+..|+.+.++.+++.++..+.....+-+++|.+...+...+++.+++.|++++.++..|.||||.|+..
T Consensus       471 s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~  550 (1143)
T KOG4177|consen  471 SKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHY  550 (1143)
T ss_pred             ccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhc
Confidence            33444444444444444444444444443333334444444444444445555555556667788888999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHH
Q 027950          130 GNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLR  197 (216)
Q Consensus       130 g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~  197 (216)
                      |+.++|++|+++|++++.+   |+||||.||..+..+    +.++|.++|++++   ..+.||++.|      ..++++.
T Consensus       551 g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~----i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~  626 (1143)
T KOG4177|consen  551 GNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHND----IAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLK  626 (1143)
T ss_pred             CCchHHHHhhhCCccccccCCCCCChhhHHHHcChHH----HHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHH
Confidence            9999999999999999876   999999999988444    5889999999997   6788999888      4567777


Q ss_pred             HcCCC
Q 027950          198 QAGSF  202 (216)
Q Consensus       198 ~~g~~  202 (216)
                      ..+..
T Consensus       627 ~~~~~  631 (1143)
T KOG4177|consen  627 VVTAT  631 (1143)
T ss_pred             hccCc
Confidence            77766

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.77  E-value=1.6e-18  Score=135.35  Aligned_cols=152  Identities=25%  Similarity=0.297  Sum_probs=125.8

Q ss_pred             ccCCcccccccccc-ccCCCCcccccCCCCCCCCCCC-CccchHHHHHHHHc-----CCHHHHHHHHhCCCCCCccC-CC
Q 027950           14 SSFDPRRNNMRFSF-GRQSSLDPIRRSPVQDELTVPE-NLDSTMQLLFMACS-----GDVKGVEDLLNEGIDVNSID-LD   85 (216)
Q Consensus        14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~-----g~~~~v~~Ll~~~~~~~~~~-~~   85 (216)
                      ..+.+-+++...++ ...++.+++..++.++...+.. +..|.||+|.++..     .+.++|..|+..| ++|.+- ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            34444455666555 4477888888888888776655 77799999999863     5788999999886 677764 56


Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCC---CCCCCCchhcccCCCC
Q 027950           86 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKAR-GAKV---PKTKRTPMTVANPREV  161 (216)
Q Consensus        86 g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~-g~~~---~~~g~t~l~~a~~~~~  161 (216)
                      |+|+|++|+..|+.++|+.|+..|+|+|.+|.+|.|+|++|+++|+++++++|+.. ++++   |..|.|+|.+|-..++
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh  419 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGH  419 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999975 6665   5559999999988877


Q ss_pred             ccccc
Q 027950          162 PEYEL  166 (216)
Q Consensus       162 ~~~~~  166 (216)
                      .++..
T Consensus       420 ~eIa~  424 (452)
T KOG0514|consen  420 REIAV  424 (452)
T ss_pred             hHHHH
Confidence            76543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.76  E-value=7e-19  Score=124.34  Aligned_cols=141  Identities=21%  Similarity=0.211  Sum_probs=113.9

Q ss_pred             ccCCCCcccccCCCCCCCCC-CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHH
Q 027950           28 GRQSSLDPIRRSPVQDELTV-PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL  106 (216)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  106 (216)
                      +-.+.+..+++++......+ ..+.++.||||.|+++||.++|+.|+..|++.+.+...|+||||.||.-.+.+++.+|+
T Consensus        71 ae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LL  150 (228)
T KOG0512|consen   71 AEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLL  150 (228)
T ss_pred             HhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHH
Confidence            33556666666655554444 45778999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCH-HHHHHHH-HCCCCC---CCCCCCchhcccCCCCcccccch
Q 027950          107 SKKANIDARDRWGSTAAADAKYYGNV-EVYNILK-ARGAKV---PKTKRTPMTVANPREVPEYELNP  168 (216)
Q Consensus       107 ~~g~~~~~~~~~g~t~L~~a~~~g~~-~~~~~Ll-~~g~~~---~~~g~t~l~~a~~~~~~~~~~~~  168 (216)
                      ++|+|+++.....+||||.|+...+. ..+.+|+ +.+.+.   +..+.||+.+|-+-+....+.++
T Consensus       151 qhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~s~~lfe~  217 (228)
T KOG0512|consen  151 QHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSMSHYLFEI  217 (228)
T ss_pred             hccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999987764 4455555 445554   33499999999776655444333

>PHA02730 ankyrin-like protein; Provisional

Probab=99.76  E-value=1.2e-17  Score=143.17  Aligned_cols=155  Identities=15%  Similarity=0.111  Sum_probs=126.0

Q ss_pred             CCCCCCCccchHHHHHHHHcC---CHHHHHHHHhCCCCCCccCCCCchHHHHHHHcC--CHHHHHHHHhCCC--CCCCCC
Q 027950           44 ELTVPENLDSTMQLLFMACSG---DVKGVEDLLNEGIDVNSIDLDGRTALHIAACEG--HVEVVKLLLSKKA--NIDARD  116 (216)
Q Consensus        44 ~~~~~~~~~~~t~L~~a~~~g---~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~Ll~~g~--~~~~~~  116 (216)
                      .++...+.+|.||||+|+..|   +.++|+.|+++|++++.+|..|.||||+|+..+  +.+++++|++.|+  +++..+
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~  111 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTS  111 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccccc
Confidence            344455678999999999986   599999999999999999999999999999876  7999999999965  557777


Q ss_pred             CCCCCHHHHHHH--cCCHHHHHHHHH-CCCCCCC--------CCCCchhcccCCCCcccccchhhHHHHhhcCCC-C---
Q 027950          117 RWGSTAAADAKY--YGNVEVYNILKA-RGAKVPK--------TKRTPMTVANPREVPEYELNPLELQVRKADGIT-K---  181 (216)
Q Consensus       117 ~~g~t~L~~a~~--~g~~~~~~~Ll~-~g~~~~~--------~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~-~---  181 (216)
                      ..+.+|++.++.  +++.+++++|++ .+++++.        .|.+|++++......+    ++++|++.|+++. .   
T Consensus       112 ~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~e----IvklLi~~g~~v~g~~~~  187 (672)
T PHA02730        112 NINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPE----VLLWLLKSECYSTGYVFR  187 (672)
T ss_pred             ccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchH----HHHHHHHcCCcccccccc
Confidence            779999999998  889999999996 6667532        3789999998877555    5899999999995 1   


Q ss_pred             --CCCcchH----H-------------HHHHHHHHHcCCC
Q 027950          182 --AWPVPLI----F-------------VHYVILLRQAGSF  202 (216)
Q Consensus       182 --~~~~~l~----~-------------~~~~~~l~~~g~~  202 (216)
                        .-.+|+-    .             ..++.+|++.|+.
T Consensus       188 ~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad  227 (672)
T PHA02730        188 SCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS  227 (672)
T ss_pred             cccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC
Confidence              1223322    1             1688999999985

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.76  E-value=2.8e-18  Score=124.07  Aligned_cols=98  Identities=22%  Similarity=0.241  Sum_probs=90.7

Q ss_pred             CCccchHHHHHHHHcCCH---HHHHHHHhCCCCCCccC-CCCchHHHHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHH
Q 027950           49 ENLDSTMQLLFMACSGDV---KGVEDLLNEGIDVNSID-LDGRTALHIAACEGHVEVVKLLLS-KKANIDARDRWGSTAA  123 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~g~~---~~v~~Ll~~~~~~~~~~-~~g~t~L~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L  123 (216)
                      .+..|.||||+|+..|+.   +++++|++.|++++.++ ..|.||||+|+..++.+++++|+. .|++++..+..|+|||
T Consensus        51 ~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL  130 (154)
T PHA02736         51 YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPY  130 (154)
T ss_pred             hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHH
Confidence            467899999999999886   46889999999999988 489999999999999999999997 4999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCC
Q 027950          124 ADAKYYGNVEVYNILKARGAKVP  146 (216)
Q Consensus       124 ~~a~~~g~~~~~~~Ll~~g~~~~  146 (216)
                      |+|+..|+.+++++|+++|++.+
T Consensus       131 ~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        131 YVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999999999865

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.75  E-value=2.8e-18  Score=139.75  Aligned_cols=159  Identities=26%  Similarity=0.282  Sum_probs=127.6

Q ss_pred             ccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHh
Q 027950           28 GRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS  107 (216)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  107 (216)
                      .+++..+.++.++..+....-.+.+|.|+||.+|.-.+.++|++|+++|++||..|..|+||||-|+..|+..++++|+.
T Consensus        48 ~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~  127 (527)
T KOG0505|consen   48 CSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQ  127 (527)
T ss_pred             cccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHH
Confidence            44777888888888777778889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCC-----------------------------------------------------------CCCCCCHHHHHHH
Q 027950          108 KKANIDAR-----------------------------------------------------------DRWGSTAAADAKY  128 (216)
Q Consensus       108 ~g~~~~~~-----------------------------------------------------------~~~g~t~L~~a~~  128 (216)
                      .|+++...                                                           ...|.|.||.|..
T Consensus       128 ~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa  207 (527)
T KOG0505|consen  128 HGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAA  207 (527)
T ss_pred             hhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHh
Confidence            98854322                                                           2346778888888


Q ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          129 YGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       129 ~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      .|+.++.++|++.|.+++.+   |+||||.|+.=+..+    .+++|+.+|++.+   ..+.+|+.++
T Consensus       208 ~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~----~~elL~~~ga~~d~~t~~g~~p~dv~  271 (527)
T KOG0505|consen  208 NGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQED----ACELLVEHGADMDAKTKMGETPLDVA  271 (527)
T ss_pred             hhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHh----HHHHHHHhhcccchhhhcCCCCccch
Confidence            88888888888888877554   888888776544333    4667777777776   4566666555

>PHA02730 ankyrin-like protein; Provisional

Probab=99.75  E-value=4.1e-18  Score=146.00  Aligned_cols=145  Identities=17%  Similarity=0.129  Sum_probs=100.2

Q ss_pred             CcccccCCCCCCCCCCCCccchHHHHHHHHcCC----HHHHHHHHhCCC--CCCccCCCCchHHHH---HHHcC------
Q 027950           33 LDPIRRSPVQDELTVPENLDSTMQLLFMACSGD----VKGVEDLLNEGI--DVNSIDLDGRTALHI---AACEG------   97 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~----~~~v~~Ll~~~~--~~~~~~~~g~t~L~~---a~~~~------   97 (216)
                      .+.++.++..+.... .+..|.||||+|+..+.    .+++++|+++|+  +++.++..|.||||.   |...+      
T Consensus       359 ieIvelLIs~GAdIN-~k~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~  437 (672)
T PHA02730        359 IPILRCMLDNGATMD-KTTDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCY  437 (672)
T ss_pred             HHHHHHHHHCCCCCC-cCCCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcccccccc
Confidence            344444444444333 34678888888877664    788888888876  577777788888873   32222      


Q ss_pred             ---CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCchhcccCCCCcccccchhh
Q 027950           98 ---HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT----KRTPMTVANPREVPEYELNPLE  170 (216)
Q Consensus        98 ---~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~----g~t~l~~a~~~~~~~~~~~~~~  170 (216)
                         ..+++++|+.+|++++.+|..|.||||+|+..++.+++++|+++|+++|..    |.||+|.|+....-  ..++++
T Consensus       438 e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~--~~eIv~  515 (672)
T PHA02730        438 ETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRREN--KTKLVD  515 (672)
T ss_pred             chhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcC--cHHHHH
Confidence               234678888888888888888888888888888888888888888887654    68888887652100  123567


Q ss_pred             HHHHhhcCCC
Q 027950          171 LQVRKADGIT  180 (216)
Q Consensus       171 ~l~~~g~~~~  180 (216)
                      +++..|++.+
T Consensus       516 ~LLs~ga~i~  525 (672)
T PHA02730        516 LLLSYHPTLE  525 (672)
T ss_pred             HHHHcCCCHH
Confidence            7777777764

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.75  E-value=6.3e-18  Score=150.22  Aligned_cols=117  Identities=23%  Similarity=0.259  Sum_probs=89.4

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCC--------------CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-
Q 027950           84 LDGRTALHIAACEGHVEVVKLLLSKKANIDARD--------------RWGSTAAADAKYYGNVEVYNILKARGAKVPKT-  148 (216)
Q Consensus        84 ~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~--------------~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~-  148 (216)
                      ..|.||||+|+..|+.+++++|+++|++++..+              ..|++|||.|+..|+.+++++|+++|+++|.. 
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            358999999999999999999999999998653              25889999999999999999999999998765 


Q ss_pred             --CCCchhcccCCC-----CcccccchhhHHHHhhcC----------CCCCCCcchHHH------HHHHHHHHcC
Q 027950          149 --KRTPMTVANPRE-----VPEYELNPLELQVRKADG----------ITKAWPVPLIFV------HYVILLRQAG  200 (216)
Q Consensus       149 --g~t~l~~a~~~~-----~~~~~~~~~~~l~~~g~~----------~~~~~~~~l~~~------~~~~~l~~~g  200 (216)
                        |+||||+|+..+     +.+......+++...++.          .+..+.||++.|      .+++++++.+
T Consensus       206 ~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence              999999997764     222222233444443333          257888999887      5677777743

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02741 hypothetical protein; Provisional

Probab=99.74  E-value=5.4e-18  Score=124.45  Aligned_cols=124  Identities=19%  Similarity=0.210  Sum_probs=104.2

Q ss_pred             ccccccccCCCCcccccCC------CCCCCCCCCCccchHHHHHHHHcCC----HHHHHHHHhCCCCCCccCC-CCchHH
Q 027950           22 NMRFSFGRQSSLDPIRRSP------VQDELTVPENLDSTMQLLFMACSGD----VKGVEDLLNEGIDVNSIDL-DGRTAL   90 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~t~L~~a~~~g~----~~~v~~Ll~~~~~~~~~~~-~g~t~L   90 (216)
                      ++++..++.++.+.++.+.      ..+......+..|.||||+|+..|+    .+++++|++.|++++.++. .|.|||
T Consensus        23 t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpL  102 (169)
T PHA02741         23 NFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTAL  102 (169)
T ss_pred             CHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHH
Confidence            4555566677777666532      1123344557789999999999998    5889999999999999885 899999


Q ss_pred             HHHHHcCCHHHHHHHHh-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Q 027950           91 HIAACEGHVEVVKLLLS-KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV  145 (216)
Q Consensus        91 ~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~  145 (216)
                      |+|+..++.+++++|+. .|++++..|..|+||||+|+..++.+++++|++.++..
T Consensus       103 h~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        103 HLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999997 59999999999999999999999999999999987654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=3.3e-16  Score=108.23  Aligned_cols=112  Identities=42%  Similarity=0.584  Sum_probs=103.0

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  129 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~  129 (216)
                      +..|.||||+|+..++.++++.|++.+.+.+..+..|.+|+|.|+..++.+++++|+..|.+++..+..|.||+|+|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            46789999999999999999999999998888899999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCC---CCCchhcccCCCC
Q 027950          130 GNVEVYNILKARGAKVPKT---KRTPMTVANPREV  161 (216)
Q Consensus       130 g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~  161 (216)
                      ++.+++++|++++.+++..   +.||++.|...+.
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~  118 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH  118 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCC
Confidence            9999999999998776544   9999999977653

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.70  E-value=6.6e-17  Score=137.39  Aligned_cols=146  Identities=18%  Similarity=0.110  Sum_probs=116.4

Q ss_pred             CcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCC--chHHHHHHHcCCH---HHHHHHHh
Q 027950           33 LDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDG--RTALHIAACEGHV---EVVKLLLS  107 (216)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g--~t~L~~a~~~~~~---~~~~~Ll~  107 (216)
                      .+.++.++..+....  .......++.|+..|+.++|++|+++|++++.++..|  .||||+|+.....   +++++|+.
T Consensus       321 ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs  398 (631)
T PHA02792        321 INVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP  398 (631)
T ss_pred             HHHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh
Confidence            344444455544432  2235567899999999999999999999999888664  6999998776554   45789999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccC------CCCcccccchhhHHHHhhcC
Q 027950          108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANP------REVPEYELNPLELQVRKADG  178 (216)
Q Consensus       108 ~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~------~~~~~~~~~~~~~l~~~g~~  178 (216)
                      +|++++.+|..|+||||+|+..++.+++++|+++|+++|..   |.||+++|+.      ....+...++++.++.+|++
T Consensus       399 ~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~  478 (631)
T PHA02792        399 YIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPT  478 (631)
T ss_pred             cCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999999999999999766   9999999854      12234445678888888877


Q ss_pred             CC
Q 027950          179 IT  180 (216)
Q Consensus       179 ~~  180 (216)
                      ++
T Consensus       479 i~  480 (631)
T PHA02792        479 IE  480 (631)
T ss_pred             hh
Confidence            75

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.69  E-value=4.1e-17  Score=137.69  Aligned_cols=172  Identities=23%  Similarity=0.202  Sum_probs=129.8

Q ss_pred             CCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCC
Q 027950           30 QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK  109 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g  109 (216)
                      ++....++-++.......-.+..|.+|||+|++.|+.++++.++.++..+|..+.+|.||||.|+..||.+++.+|+.+|
T Consensus        59 ng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~  138 (854)
T KOG0507|consen   59 NGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKN  138 (854)
T ss_pred             cCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcC
Confidence            33344444444444445555677888888888888888888888887777888888888888888888888888888888


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----------CCCCCCchhcccCCCCcccccchhhHHHHhhcC
Q 027950          110 ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV-----------PKTKRTPMTVANPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       110 ~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~-----------~~~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                      +++...|.++.|++-.|++.|..++++.|++...++           ...+.+|+|.|+..+..+    .++.+++.|.+
T Consensus       139 adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~----~~~~ll~ag~d  214 (854)
T KOG0507|consen  139 ADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVE----CMQALLEAGFD  214 (854)
T ss_pred             CCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHH----HHHHHHhcCCC
Confidence            888888888888888888888888888888763322           111888999999888665    47888899998


Q ss_pred             CC--CCCCcchHHH------HHHHHHHHcCCCCCc
Q 027950          179 IT--KAWPVPLIFV------HYVILLRQAGSFNQE  205 (216)
Q Consensus       179 ~~--~~~~~~l~~~------~~~~~l~~~g~~~~~  205 (216)
                      ++  ...-|++|.|      ..+..|++.|+....
T Consensus       215 in~~t~~gtalheaalcgk~evvr~ll~~gin~h~  249 (854)
T KOG0507|consen  215 INYTTEDGTALHEAALCGKAEVVRFLLEIGINTHI  249 (854)
T ss_pred             cccccccchhhhhHhhcCcchhhhHHHhhcccccc
Confidence            87  4566777776      577888888876433

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.68  E-value=1.6e-16  Score=129.67  Aligned_cols=144  Identities=28%  Similarity=0.342  Sum_probs=125.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 027950           55 MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV  134 (216)
Q Consensus        55 t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~  134 (216)
                      -.+..||..|+.+-+..|+..|++++..+.+|.|+||-+|...+.+||++|+++|++++..|..||||+|.|+..|+..+
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            45677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCC--------------------------------------------------------------CCCCCCc
Q 027950          135 YNILKARGAKV--------------------------------------------------------------PKTKRTP  152 (216)
Q Consensus       135 ~~~Ll~~g~~~--------------------------------------------------------------~~~g~t~  152 (216)
                      +.+|+++|+++                                                              ...|.|.
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            99999999871                                                              1117889


Q ss_pred             hhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          153 MTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       153 l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      ||+|+..++.+.    +++|+..|.+++   .++++|+|+|      ..+.+|.+.|..
T Consensus       202 lHvAaa~Gy~e~----~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~  256 (527)
T KOG0505|consen  202 LHVAAANGYTEV----AALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGAD  256 (527)
T ss_pred             HHHHHhhhHHHH----HHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcc
Confidence            999988886664    788888888875   7899999998      345666676664

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.67  E-value=3.8e-16  Score=138.90  Aligned_cols=123  Identities=23%  Similarity=0.238  Sum_probs=103.1

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccC--------------CCCchHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSID--------------LDGRTALHIAACEGHVEVVKLLLSKKANIDAR  115 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~--------------~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~  115 (216)
                      ...|.||||+|+..|+.++|+.|+++|++++.++              ..|.||||.|+..|+.+++++|++.|++++..
T Consensus       125 ~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~  204 (743)
T TIGR00870       125 FTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA  204 (743)
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhH
Confidence            3469999999999999999999999999998653              35899999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHcC---------CHHHHHHHHHCCCCC----------CCCCCCchhcccCCCCcccccchhhHHHHhh
Q 027950          116 DRWGSTAAADAKYYG---------NVEVYNILKARGAKV----------PKTKRTPMTVANPREVPEYELNPLELQVRKA  176 (216)
Q Consensus       116 ~~~g~t~L~~a~~~g---------~~~~~~~Ll~~g~~~----------~~~g~t~l~~a~~~~~~~~~~~~~~~l~~~g  176 (216)
                      |..|+||||+|+..+         ...+.+++++.++..          |..|.|||++|+..+..++    .+++++.+
T Consensus       205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l----~~lLL~~~  280 (743)
T TIGR00870       205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVL----FRLKLAIK  280 (743)
T ss_pred             hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccH----HHHHHHHH
Confidence            999999999999986         234666676665542          6669999999999886654    55556544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.66  E-value=2e-16  Score=100.53  Aligned_cols=93  Identities=32%  Similarity=0.537  Sum_probs=85.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 027950           55 MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV  134 (216)
Q Consensus        55 t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~  134 (216)
                      ..+.|++++|.++-|+..+..|.++|.. ..|.+|||+|+-.|...+++||+..|++++.+|+.|-|||.-|++.|+.+|
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~c   82 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDC   82 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHH
Confidence            4578999999999999999999888764 489999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCC
Q 027950          135 YNILKARGAKVPKT  148 (216)
Q Consensus       135 ~~~Ll~~g~~~~~~  148 (216)
                      |++|+++|++-..+
T Consensus        83 VklLL~~GAdrt~~   96 (117)
T KOG4214|consen   83 VKLLLQNGADRTIH   96 (117)
T ss_pred             HHHHHHcCccccee
Confidence            99999999986544

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.64  E-value=4.4e-16  Score=132.65  Aligned_cols=124  Identities=29%  Similarity=0.304  Sum_probs=108.9

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCcc---------C--------------CCCchHHHHHHHcCCHHHHH
Q 027950           47 VPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSI---------D--------------LDGRTALHIAACEGHVEVVK  103 (216)
Q Consensus        47 ~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~---------~--------------~~g~t~L~~a~~~~~~~~~~  103 (216)
                      ....+.|+||||+|+.+.+.+.|+.|++.|||++.+         |              +.|+.||.+|+..++.++++
T Consensus       178 ~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivr  257 (782)
T KOG3676|consen  178 TSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVR  257 (782)
T ss_pred             hhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHH
Confidence            344566999999999999999999999999998743         1              24789999999999999999


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCchhcccCCCCcccccchhh
Q 027950          104 LLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK-----VPKTKRTPMTVANPREVPEYELNPLE  170 (216)
Q Consensus       104 ~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~-----~~~~g~t~l~~a~~~~~~~~~~~~~~  170 (216)
                      +|+++|+|++.+|..|+|.||..+.+-..++..+++++|++     .|..|-|||.+|+..+-.++...+++
T Consensus       258 lLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile  329 (782)
T KOG3676|consen  258 LLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILE  329 (782)
T ss_pred             HHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHH
Confidence            99999999999999999999999999899999999999999     36779999999998876665444443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.64  E-value=1.1e-15  Score=116.45  Aligned_cols=126  Identities=27%  Similarity=0.251  Sum_probs=106.9

Q ss_pred             HHcCCHHHHHHHHh-CCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 027950           61 ACSGDVKGVEDLLN-EGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK  139 (216)
Q Consensus        61 ~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll  139 (216)
                      |..|+.-.|+.-++ ..-|.|.-|..|.+|||||+..|+..+++.|+..|+.+|..+....||||+|+.+|+.+++..|+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence            55555555554443 33467777788999999999999999999999999999999998899999999999999999999


Q ss_pred             HCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          140 ARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       140 ~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      ++.+|+|..   |.||||+||.-++..    +++-++..|+.++   +.+.||+..+
T Consensus        88 ~~kadvnavnehgntplhyacfwgydq----iaedli~~ga~v~icnk~g~tpldka  140 (448)
T KOG0195|consen   88 SRKADVNAVNEHGNTPLHYACFWGYDQ----IAEDLISCGAAVNICNKKGMTPLDKA  140 (448)
T ss_pred             HHhcccchhhccCCCchhhhhhhcHHH----HHHHHHhccceeeecccCCCCchhhh
Confidence            999999765   999999999877544    5788889999885   7888998777

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.62  E-value=1.4e-15  Score=99.65  Aligned_cols=85  Identities=32%  Similarity=0.439  Sum_probs=75.6

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCccccc
Q 027950           90 LHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYEL  166 (216)
Q Consensus        90 L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~  166 (216)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+   
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~---   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE---   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH---
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH---
Confidence            7999999999999999999988877    889999999999999999999999999775   999999999988654   


Q ss_pred             chhhHHHHhhcCCCCC
Q 027950          167 NPLELQVRKADGITKA  182 (216)
Q Consensus       167 ~~~~~l~~~g~~~~~~  182 (216)
                       +++++++.|++++..
T Consensus        74 -~~~~Ll~~g~~~~~~   88 (89)
T PF12796_consen   74 -IVKLLLEHGADVNIR   88 (89)
T ss_dssp             -HHHHHHHTTT-TTSS
T ss_pred             -HHHHHHHcCCCCCCc
Confidence             588999999988754

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.62  E-value=4.9e-15  Score=129.68  Aligned_cols=102  Identities=38%  Similarity=0.489  Sum_probs=93.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 027950           55 MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV  134 (216)
Q Consensus        55 t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~  134 (216)
                      ..|+.|+..|+.+.++.|++.|+++|..|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHC-------CCCCCCC---CCCchhcc
Q 027950          135 YNILKAR-------GAKVPKT---KRTPMTVA  156 (216)
Q Consensus       135 ~~~Ll~~-------g~~~~~~---g~t~l~~a  156 (216)
                      +++|+++       |++.+..   |.+|+..+
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLED  195 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchh
Confidence            9999998       6666443   66666543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.59  E-value=1.8e-14  Score=109.50  Aligned_cols=117  Identities=36%  Similarity=0.419  Sum_probs=106.9

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCC-----HHHHHHHHhCCC---CCCCCCCCC
Q 027950           48 PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH-----VEVVKLLLSKKA---NIDARDRWG  119 (216)
Q Consensus        48 ~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~-----~~~~~~Ll~~g~---~~~~~~~~g  119 (216)
                      ..+..+.++++.++..+..+.+++++..|++++..+..|.||||+|+..++     .+++++|++.|+   ..+..+..|
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          68 ARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             cCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            344557899999999999999999999999999999999999999999999     999999999999   666679999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCccc
Q 027950          120 STAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY  164 (216)
Q Consensus       120 ~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~  164 (216)
                      .||||+|+..|+.+++++|++.|++++..   |.|++++|+..+..++
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~  195 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIEL  195 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHH
Confidence            99999999999999999999999998654   9999999998876554

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.58  E-value=1.2e-15  Score=97.01  Aligned_cols=96  Identities=27%  Similarity=0.329  Sum_probs=85.5

Q ss_pred             CCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCC
Q 027950           30 QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK  109 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g  109 (216)
                      +|.++.+++...++ .+++....|.+|||+|+-.|+.+++.+|+..|++++.+|..|.|||..|+..||.+||++|++.|
T Consensus        12 NG~~DeVk~~v~~g-~nVn~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~G   90 (117)
T KOG4214|consen   12 NGEIDEVKQSVNEG-LNVNEIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNG   90 (117)
T ss_pred             cCcHHHHHHHHHcc-ccHHHHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcC
Confidence            56677777766665 66777789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHH
Q 027950          110 ANIDARDRWGSTAAADA  126 (216)
Q Consensus       110 ~~~~~~~~~g~t~L~~a  126 (216)
                      ++.......|.+.+..+
T Consensus        91 Adrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   91 ADRTIHAPDGTALIEAT  107 (117)
T ss_pred             cccceeCCCchhHHhhc
Confidence            99999988888766544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.57  E-value=3.2e-15  Score=89.07  Aligned_cols=55  Identities=49%  Similarity=0.601  Sum_probs=32.4

Q ss_pred             HHhCC-CCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 027950           72 LLNEG-IDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  126 (216)
Q Consensus        72 Ll~~~-~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a  126 (216)
                      |+++| .+++..|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 78999999999999999999999999999999999999999999999987

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.55  E-value=1.8e-14  Score=121.97  Aligned_cols=167  Identities=19%  Similarity=0.106  Sum_probs=142.0

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      .+++..+-+++.+.++.++......+..+..|.||||.|+.+||.+++.+|+.+|++.-..+.++.|+|-+|++.|..++
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~V  163 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEV  163 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHH
Confidence            45566677999999999999998888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCC--------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCchhcccCCCCcccccchhhH
Q 027950          102 VKLLLSKKANI--------DARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT--KRTPMTVANPREVPEYELNPLEL  171 (216)
Q Consensus       102 ~~~Ll~~g~~~--------~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~--g~t~l~~a~~~~~~~~~~~~~~~  171 (216)
                      ++.|+....+.        ..++..+-+|||.|+.+|+.++++.|++.|.++|..  ..|+||.|+..+-.+    .+.+
T Consensus       164 vq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~gtalheaalcgk~e----vvr~  239 (854)
T KOG0507|consen  164 VQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDGTALHEAALCGKAE----VVRF  239 (854)
T ss_pred             HHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccchhhhhHhhcCcch----hhhH
Confidence            99998763222        223345678999999999999999999999999987  779999998777444    4678


Q ss_pred             HHHhhcCCCCCCCcchHHHHH
Q 027950          172 QVRKADGITKAWPVPLIFVHY  192 (216)
Q Consensus       172 l~~~g~~~~~~~~~~l~~~~~  192 (216)
                      +++.|.+....+..+.++..+
T Consensus       240 ll~~gin~h~~n~~~qtaldi  260 (854)
T KOG0507|consen  240 LLEIGINTHIKNQHGQTALDI  260 (854)
T ss_pred             HHhhccccccccccchHHHHH
Confidence            888898887666666666544

>PHA02792 ankyrin-like protein; Provisional

Probab=99.55  E-value=1.4e-13  Score=117.41  Aligned_cols=130  Identities=10%  Similarity=0.005  Sum_probs=105.7

Q ss_pred             HHHHHHHHcC--CHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC--CCHHHHHHHcC
Q 027950           55 MQLLFMACSG--DVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG--STAAADAKYYG  130 (216)
Q Consensus        55 t~L~~a~~~g--~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g--~t~L~~a~~~g  130 (216)
                      -.||.-...+  +.+++++|+++|+++..  ......++.|+..|+.+++++|+++|++++.+|..|  .||||+|+...
T Consensus       308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~  385 (631)
T PHA02792        308 DLLSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIH  385 (631)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhc
Confidence            3445545555  78999999999998752  234567899999999999999999999999998775  69999988766


Q ss_pred             CH---HHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          131 NV---EVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       131 ~~---~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      ..   +++++|+++|+++|.+   |.||||+|+..+..+    .+++|+..|++++   ..+.||++.|
T Consensus       386 ~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~e----ivelLLs~GADIN~kD~~G~TpL~~A  450 (631)
T PHA02792        386 ESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVS----LVEWLIDNGADINITTKYGSTCIGIC  450 (631)
T ss_pred             cHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            54   4688999999999876   999999999877544    5789999999987   5677888776

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=3e-14  Score=116.29  Aligned_cols=91  Identities=36%  Similarity=0.415  Sum_probs=74.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 027950           55 MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV  134 (216)
Q Consensus        55 t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~  134 (216)
                      -.|.-|+..|.++.|+..+..--|+...+.+|.|+||.|+..||.++|+||++.|+++|..|.+||||||+|+..++..+
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHH
Confidence            34555677888888888876656666777788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHCCCCC
Q 027950          135 YNILKARGAKV  145 (216)
Q Consensus       135 ~~~Ll~~g~~~  145 (216)
                      ++.|++.|+.+
T Consensus       632 ckqLVe~Gaav  642 (752)
T KOG0515|consen  632 CKQLVESGAAV  642 (752)
T ss_pred             HHHHHhccceE
Confidence            88888888876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.53  E-value=2.9e-14  Score=84.44  Aligned_cols=54  Identities=44%  Similarity=0.612  Sum_probs=28.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 027950           86 GRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK  139 (216)
Q Consensus        86 g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll  139 (216)
                      |.||||+|+..|+.+++++|++.|.+++.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            445666666666666666666556666666556666666666666666665553

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=7e-15  Score=119.96  Aligned_cols=114  Identities=26%  Similarity=0.227  Sum_probs=100.5

Q ss_pred             ccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHh
Q 027950           28 GRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS  107 (216)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  107 (216)
                      +=.|.++.+.+.+.+-...-..+..|.|+||-|+..||+++|++|++.|+++|..|..|+||||+|++.++..++++|++
T Consensus       558 aLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe  637 (752)
T KOG0515|consen  558 ALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVE  637 (752)
T ss_pred             hhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHh
Confidence            44788888888888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCC-CCCCCHHHHHH--HcCCHHHHHHHHHC
Q 027950          108 KKANIDARD-RWGSTAAADAK--YYGNVEVYNILKAR  141 (216)
Q Consensus       108 ~g~~~~~~~-~~g~t~L~~a~--~~g~~~~~~~Ll~~  141 (216)
                      .|+.+-..+ .++.|+..-+-  +.|+..|.+||...
T Consensus       638 ~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  638 SGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             ccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            998877655 56778877654  46889999999753

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.51  E-value=4.2e-14  Score=83.70  Aligned_cols=54  Identities=44%  Similarity=0.660  Sum_probs=46.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHH
Q 027950           53 STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL  106 (216)
Q Consensus        53 ~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  106 (216)
                      |.||||+|+..|+.+++++|+++|.+++..|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            579999999999999999999999999999999999999999999999999986

...

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.51  E-value=4.8e-14  Score=120.38  Aligned_cols=163  Identities=21%  Similarity=0.195  Sum_probs=124.3

Q ss_pred             ccccccCCCCcccccCCCCC--------CCCCCC-CccchHHHHHHHHc---CCHHHHHHHHhCCCC-CCc----cCCCC
Q 027950           24 RFSFGRQSSLDPIRRSPVQD--------ELTVPE-NLDSTMQLLFMACS---GDVKGVEDLLNEGID-VNS----IDLDG   86 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~t~L~~a~~~---g~~~~v~~Ll~~~~~-~~~----~~~~g   86 (216)
                      .|....++.++.+.......        .|..+. ..-|.|.||.|..+   ++.++++.|++.-.. +|.    ..+.|
T Consensus       105 ~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~G  184 (782)
T KOG3676|consen  105 LFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYG  184 (782)
T ss_pred             hhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcC
Confidence            34444455555554444443        344555 66699999999873   667999999875321 222    13679


Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCCCC---------C--------------CCCCCHHHHHHHcCCHHHHHHHHHCCC
Q 027950           87 RTALHIAACEGHVEVVKLLLSKKANIDAR---------D--------------RWGSTAAADAKYYGNVEVYNILKARGA  143 (216)
Q Consensus        87 ~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~---------~--------------~~g~t~L~~a~~~g~~~~~~~Ll~~g~  143 (216)
                      .||||.|+.+.+.++|++|++.|||++.+         |              ..|+.||.+|+..++.+|+++|+++||
T Consensus       185 qSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gA  264 (782)
T KOG3676|consen  185 QSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGA  264 (782)
T ss_pred             cchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCC
Confidence            99999999999999999999999999754         1              147899999999999999999999999


Q ss_pred             CCCCC---CCCchhcccCCCCcccccchhhHHHHhhcC-----CCCCCCcchHHH
Q 027950          144 KVPKT---KRTPMTVANPREVPEYELNPLELQVRKADG-----ITKAWPVPLIFV  190 (216)
Q Consensus       144 ~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~-----~~~~~~~~l~~~  190 (216)
                      |+|..   |.|.||......    ..++....+..|++     +|.++-||+..|
T Consensus       265 d~~aqDS~GNTVLH~lVi~~----~~~My~~~L~~ga~~l~~v~N~qgLTPLtLA  315 (782)
T KOG3676|consen  265 DPNAQDSNGNTVLHMLVIHF----VTEMYDLALELGANALEHVRNNQGLTPLTLA  315 (782)
T ss_pred             CCCccccCCChHHHHHHHHH----HHHHHHHHHhcCCCccccccccCCCChHHHH
Confidence            99876   999999886653    44456777888888     468888998887

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.47  E-value=3.7e-13  Score=92.83  Aligned_cols=118  Identities=32%  Similarity=0.396  Sum_probs=102.1

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      +..+.+...++.+.+..+...+......+..|.+|+|.|+..+..+.++.|++.+++++..+..|.||+|+|+..++.++
T Consensus         9 t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~   88 (126)
T cd00204           9 TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDV   88 (126)
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHH
Confidence            33444455666666666666666556778889999999999999999999999998888888899999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 027950          102 VKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK  139 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll  139 (216)
                      +++|+..+.+++..+..|.||+++|...++.+++++|+
T Consensus        89 ~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          89 VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999999999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.42  E-value=6.7e-13  Score=100.85  Aligned_cols=113  Identities=27%  Similarity=0.374  Sum_probs=100.2

Q ss_pred             CCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCC-----HHHHHHHHhCCC---CCCccCCCCchHHHHHHHcCCHHH
Q 027950           30 QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGD-----VKGVEDLLNEGI---DVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~-----~~~v~~Ll~~~~---~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      .+....+......+......+..|.||+|+|+..++     .++++.|++.|+   ..+..+..|.||||+|+..|+.++
T Consensus        83 ~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~  162 (235)
T COG0666          83 KGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADI  162 (235)
T ss_pred             cCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHH
Confidence            344444445556666667788899999999999999     999999999999   555569999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q 027950          102 VKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG  142 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g  142 (216)
                      +++|++.|++++..+..|.|+++.|+..++.++++.+++.+
T Consensus       163 ~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         163 VELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999977

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.41  E-value=3.5e-13  Score=102.79  Aligned_cols=109  Identities=27%  Similarity=0.238  Sum_probs=90.1

Q ss_pred             CCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCcc-CCCCchHHHHHHHcCCHHHHHHHHhCC
Q 027950           31 SSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSI-DLDGRTALHIAACEGHVEVVKLLLSKK  109 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~-~~~g~t~L~~a~~~~~~~~~~~Ll~~g  109 (216)
                      ++.+....++..-......+..|.++|..|+..|+.+.++.|++.|+|+|.. +..+.||||+|+.+|+.++.++|++.|
T Consensus        23 ndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaG  102 (396)
T KOG1710|consen   23 NDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAG  102 (396)
T ss_pred             CcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhcc
Confidence            3333333333333334556888999999999999999999999999999874 566899999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 027950          110 ANIDARDRWGSTAAADAKYYGNVEVYNILK  139 (216)
Q Consensus       110 ~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll  139 (216)
                      +.+...|.-|+|+-.+|+.-|+.+||..+-
T Consensus       103 a~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen  103 ARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             CccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            999999999999999999999999886653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.41  E-value=2.3e-13  Score=81.02  Aligned_cols=52  Identities=35%  Similarity=0.531  Sum_probs=31.1

Q ss_pred             HHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcc
Q 027950          105 LLSKK-ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVA  156 (216)
Q Consensus       105 Ll~~g-~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a  156 (216)
                      |++.| ++++.+|..|.||||+|+..|+.+++++|++.|++++.+   |+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            56777 899999999999999999999999999999999999765   99999986

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.41  E-value=3.3e-13  Score=118.53  Aligned_cols=174  Identities=21%  Similarity=0.203  Sum_probs=129.9

Q ss_pred             ccccc-CCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccC--CCCchHHHHHHHcCCHHH
Q 027950           25 FSFGR-QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSID--LDGRTALHIAACEGHVEV  101 (216)
Q Consensus        25 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~a~~~~~~~~  101 (216)
                      .++++ .++.+.+..++..+......+....|||-.|...|.+++|+.|+.+|+.+|.+.  ..|..||++|...||...
T Consensus       828 lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~a  907 (2131)
T KOG4369|consen  828 LSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAA  907 (2131)
T ss_pred             EEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHH
Confidence            33433 455565566666666666667778888888888888999999988888887763  568889999988999888


Q ss_pred             HHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhc
Q 027950          102 VKLLLSKKANIDARD-RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKAD  177 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~-~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~  177 (216)
                      +..|++.|-|+|..- .+.+|+|-+|+..|+.+++.+|+.+.+++..+   |-|||+-++..++.+    ...+|+..|+
T Consensus       908 t~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvd----vg~~li~~ga  983 (2131)
T KOG4369|consen  908 TLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVD----VGNLLIAAGA  983 (2131)
T ss_pred             HHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccc----cchhhhhccc
Confidence            888888888888753 34568888888888888888888888888655   888888888888655    3678888888


Q ss_pred             CCC-----CCCCcchHHH------HHHHHHHHcCCC
Q 027950          178 GIT-----KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       178 ~~~-----~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      +.+     ..+.|.+...      .++.++++..+.
T Consensus       984 d~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at 1019 (2131)
T KOG4369|consen  984 DTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT 1019 (2131)
T ss_pred             ccccCCCCCcCCccceeecCCCchhhhHHhhCCccc
Confidence            886     3455555444      466666665543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.38  E-value=2.1e-13  Score=119.69  Aligned_cols=147  Identities=21%  Similarity=0.249  Sum_probs=107.8

Q ss_pred             CCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCc-cCCCCchHHHHHHHcCCHHHHHHHHhC
Q 027950           30 QSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNS-IDLDGRTALHIAACEGHVEVVKLLLSK  108 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~a~~~~~~~~~~~Ll~~  108 (216)
                      .+..+.+..++.++......+..|.+||.+|+-.||..+|..|+++.++++. .|..+.|+|.+||..|+.+++++|+..
T Consensus       767 ggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~  846 (2131)
T KOG4369|consen  767 GGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNA  846 (2131)
T ss_pred             CccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHh
Confidence            4445555555566566666677788888888888888888888888887776 356677888888888888888888888


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CCCchhcccCCCCcccccchhhHHHHhhcCCC
Q 027950          109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT-----KRTPMTVANPREVPEYELNPLELQVRKADGIT  180 (216)
Q Consensus       109 g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~-----g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~  180 (216)
                      |++-..++-...|||.+|...|+.+++++|+..|+.+|.+     |..||++|...++...    ...+++.|.+++
T Consensus       847 gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~a----t~~ll~~gsdiN  919 (2131)
T KOG4369|consen  847 GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAA----TLSLLQPGSDIN  919 (2131)
T ss_pred             hccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHH----HHHHhcccchhc
Confidence            8887777777788888888888888888888888777654     7777777766554432    344555555554

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.32  E-value=7.1e-12  Score=95.75  Aligned_cols=112  Identities=27%  Similarity=0.253  Sum_probs=98.6

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHcC
Q 027950           52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR-DRWGSTAAADAKYYG  130 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~L~~a~~~g  130 (216)
                      +...||..++-.++.+.+..||..--++|.+|..|.++|..|+..|+.+++++|++.|+|+|.. +..+.||||+|+.+|
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            4568999999999999999999875568999999999999999999999999999999999975 456899999999999


Q ss_pred             CHHHHHHHHHCCCCC---CCCCCCchhcccCCCCcc
Q 027950          131 NVEVYNILKARGAKV---PKTKRTPMTVANPREVPE  163 (216)
Q Consensus       131 ~~~~~~~Ll~~g~~~---~~~g~t~l~~a~~~~~~~  163 (216)
                      +.++.++|++.|+..   |..|+|+-..|+.-+..+
T Consensus        91 n~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~  126 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHE  126 (396)
T ss_pred             CchHHHHHHhccCccccccchhhhHHHHHHHhcchH
Confidence            999999999999985   555999998886544443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.24  E-value=1.2e-11  Score=108.53  Aligned_cols=102  Identities=25%  Similarity=0.255  Sum_probs=88.9

Q ss_pred             ccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHH
Q 027950           26 SFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLL  105 (216)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L  105 (216)
                      ..+..+..+.++.++..+......+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|
T Consensus        88 ~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~L  167 (664)
T PTZ00322         88 QLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL  167 (664)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHH
Confidence            34557777777777777766667788899999999999999999999999999999999999999999999999999999


Q ss_pred             HhC-------CCCCCCCCCCCCCHHHHHH
Q 027950          106 LSK-------KANIDARDRWGSTAAADAK  127 (216)
Q Consensus       106 l~~-------g~~~~~~~~~g~t~L~~a~  127 (216)
                      +.+       |++++..+..|.+|+..+.
T Consensus       168 l~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        168 SRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HhCCCcccccCCCCCccccCCCCccchhh
Confidence            998       8888888888887766554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.16  E-value=4.9e-11  Score=96.64  Aligned_cols=97  Identities=39%  Similarity=0.659  Sum_probs=89.4

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHH
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTAAADAKY  128 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~a~~  128 (216)
                      +.++..++++|++.|++..++.+.-.|.|++.+|++..|+||.|+..|+.+++++|+.. +.+++.+|+||+|||.-|..
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~  582 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKH  582 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHh
Confidence            44567789999999999999999999999999999999999999999999999999987 89999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCC
Q 027950          129 YGNVEVYNILKARGAKVP  146 (216)
Q Consensus       129 ~g~~~~~~~Ll~~g~~~~  146 (216)
                      .++.+++++|.+.....+
T Consensus       583 F~h~~v~k~L~~~~~~y~  600 (622)
T KOG0506|consen  583 FKHKEVVKLLEEAQYPYT  600 (622)
T ss_pred             cCcHHHHHHHHHHhcccc
Confidence            999999999988655443

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.11  E-value=5e-10  Score=91.33  Aligned_cols=87  Identities=29%  Similarity=0.300  Sum_probs=79.7

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhCCCCCCccCC-CCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q 027950           54 TMQLLFMACSGDVKGVEDLLNEGIDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV  132 (216)
Q Consensus        54 ~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~  132 (216)
                      ...||-.+..|+.++.-.|+..|+++|..+. .|.||||.|+..|+.-.+++|.-+|+|++..|..|+||+.+|...|+.
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~  213 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHH  213 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCch
Confidence            3578988999999999999999999999874 599999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q 027950          133 EVYNILKA  140 (216)
Q Consensus       133 ~~~~~Ll~  140 (216)
                      ++.+-|++
T Consensus       214 ~laeRl~e  221 (669)
T KOG0818|consen  214 ELAERLVE  221 (669)
T ss_pred             HHHHHHHH
Confidence            87766655

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.96  E-value=3.1e-09  Score=88.22  Aligned_cols=91  Identities=36%  Similarity=0.413  Sum_probs=80.4

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCC--CCc--cCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 027950           56 QLLFMACSGDVKGVEDLLNEGID--VNS--IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  131 (216)
Q Consensus        56 ~L~~a~~~g~~~~v~~Ll~~~~~--~~~--~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~  131 (216)
                      .|..|....++..+..||.+|..  +|.  -+..|.|+||+||+.|+..+.++|+-+|+|+...|..|+|+|.||.+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            56777888889999999988743  443  24568999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCC
Q 027950          132 VEVYNILKARGAKVP  146 (216)
Q Consensus       132 ~~~~~~Ll~~g~~~~  146 (216)
                      -+|+.+|+++|+.-+
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            999999999998754

>PF13606 Ank_3: Ankyrin repeat

Probab=98.95  E-value=1.6e-09  Score=55.48  Aligned_cols=28  Identities=36%  Similarity=0.438  Sum_probs=17.4

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCC
Q 027950          119 GSTAAADAKYYGNVEVYNILKARGAKVP  146 (216)
Q Consensus       119 g~t~L~~a~~~g~~~~~~~Ll~~g~~~~  146 (216)
                      |+||||+|++.|+.+++++|+++|+++|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666666654

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.90  E-value=4.2e-09  Score=87.49  Aligned_cols=94  Identities=28%  Similarity=0.387  Sum_probs=56.7

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhCCCC--CCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Q 027950           47 VPENLDSTMQLLFMACSGDVKGVEDLLNEGID--VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAA  124 (216)
Q Consensus        47 ~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  124 (216)
                      ...+.+..+.||+|++.|+-++|+++|++|..  ++..+..|.|+||-|+..++..++++|++.|+.+...|..|.||-.
T Consensus       893 l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~e  972 (1004)
T KOG0782|consen  893 LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQE  972 (1004)
T ss_pred             EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHH
Confidence            34445555666666666666666666666532  3444555666666666666666666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHH
Q 027950          125 DAKYYGNVEVYNILKA  140 (216)
Q Consensus       125 ~a~~~g~~~~~~~Ll~  140 (216)
                      -|...|..++..||-.
T Consensus       973 raqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  973 RAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHhcCCchHHHHHhh
Confidence            6666666666655543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.88  E-value=3.3e-09  Score=54.36  Aligned_cols=28  Identities=46%  Similarity=0.834  Sum_probs=17.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCC
Q 027950           86 GRTALHIAACEGHVEVVKLLLSKKANID  113 (216)
Q Consensus        86 g~t~L~~a~~~~~~~~~~~Ll~~g~~~~  113 (216)
                      |+||||+|++.|+.+++++|++.|+|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5566666666666666666666666654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.82  E-value=2.7e-09  Score=92.00  Aligned_cols=80  Identities=28%  Similarity=0.279  Sum_probs=53.4

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCC-CCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 027950           49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  127 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~-~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~  127 (216)
                      .+..|.++||+++..+..+++++|+++|++++.+|. +|+||||.|...|+++|+-.|+.+|....++|..|.+||..-+
T Consensus        48 kD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~~  127 (1267)
T KOG0783|consen   48 KDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFLS  127 (1267)
T ss_pred             HHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHHh
Confidence            344566677776666666677777777766666653 3667777777677777777777777666666666777766655


Q ss_pred             H
Q 027950          128 Y  128 (216)
Q Consensus       128 ~  128 (216)
                      +
T Consensus       128 r  128 (1267)
T KOG0783|consen  128 R  128 (1267)
T ss_pred             h
Confidence            4

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.81  E-value=1.5e-08  Score=83.53  Aligned_cols=87  Identities=26%  Similarity=0.381  Sum_probs=75.2

Q ss_pred             HHHHHHHHcCCHHHHHHHH--hCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q 027950           55 MQLLFMACSGDVKGVEDLL--NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV  132 (216)
Q Consensus        55 t~L~~a~~~g~~~~v~~Ll--~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~  132 (216)
                      .|+|+++.....+-....+  +.+..++..|..|.||||+|+..|+.+.++.|+..|+++..+|..|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            5699999887776666644  33456888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHC
Q 027950          133 EVYNILKAR  141 (216)
Q Consensus       133 ~~~~~Ll~~  141 (216)
                      .++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            887777654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.81  E-value=9.3e-09  Score=54.04  Aligned_cols=30  Identities=57%  Similarity=0.828  Sum_probs=14.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 027950           86 GRTALHIAACEGHVEVVKLLLSKKANIDAR  115 (216)
Q Consensus        86 g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~  115 (216)
                      |.||||+|+..|+.+++++|++.|++++.+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCB
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            444455554444445555444444444443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.76  E-value=3.6e-09  Score=91.30  Aligned_cols=80  Identities=33%  Similarity=0.478  Sum_probs=74.3

Q ss_pred             CCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCchh
Q 027950           79 VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR-WGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMT  154 (216)
Q Consensus        79 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~a~~~g~~~~~~~Ll~~g~~~---~~~g~t~l~  154 (216)
                      .|.+|..|.++||.++..+...++++|+++|+++..+|. .|+||||-|+..|+++|+-+|+.+|+.+   |..|.+||+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            677899999999999999999999999999999999996 6999999999999999999999999987   555999999


Q ss_pred             cccC
Q 027950          155 VANP  158 (216)
Q Consensus       155 ~a~~  158 (216)
                      ..++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8766

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.74  E-value=1.8e-08  Score=52.94  Aligned_cols=32  Identities=34%  Similarity=0.448  Sum_probs=30.0

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhCCCCCCccC
Q 027950           52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSID   83 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~   83 (216)
                      +|.||||+|+..|+.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            58899999999999999999999999998875

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.69  E-value=5.7e-09  Score=84.91  Aligned_cols=88  Identities=31%  Similarity=0.339  Sum_probs=79.5

Q ss_pred             cccccc-ccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCchHHHHHHHcCCH
Q 027950           22 NMRFSF-GRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHV   99 (216)
Q Consensus        22 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~a~~~~~~   99 (216)
                      .+.+.+ +..|+++.++++...+......+++..|+||.|+..|+++++++|++. +.+++.+|.+|+|||--|...+|.
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~  586 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHK  586 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcH
Confidence            344444 568999999999999999999999999999999999999999999975 788999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 027950          100 EVVKLLLSKK  109 (216)
Q Consensus       100 ~~~~~Ll~~g  109 (216)
                      +++++|-+.-
T Consensus       587 ~v~k~L~~~~  596 (622)
T KOG0506|consen  587 EVVKLLEEAQ  596 (622)
T ss_pred             HHHHHHHHHh
Confidence            9999998763

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.55  E-value=4.3e-07  Score=72.35  Aligned_cols=75  Identities=31%  Similarity=0.335  Sum_probs=64.5

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCH
Q 027950           48 PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA  122 (216)
Q Consensus        48 ~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  122 (216)
                      ........-|++||..|+.+.|+.|++.|.++|..|....+||.+|+..||.+++++|+++|+--..-+..|.-.
T Consensus        31 ~~~~~~f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   31 PLKKVPFGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             ccccCchHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            333344667999999999999999999999999999999999999999999999999999998666555566544

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.46  E-value=7.9e-07  Score=74.32  Aligned_cols=107  Identities=27%  Similarity=0.292  Sum_probs=91.6

Q ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCC--CCCCCCCCCCCHHHHHHHcCCHHH
Q 027950           57 LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA--NIDARDRWGSTAAADAKYYGNVEV  134 (216)
Q Consensus        57 L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~--~~~~~~~~g~t~L~~a~~~g~~~~  134 (216)
                      +..|+..+++--+......|.++...+....+.||+|+..|+-++|+|++++|-  -+++.+..|.|+||.|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            677888888776777777888888888888999999999999999999999974  356667889999999999999999


Q ss_pred             HHHHHHCCCCC---CCCCCCchhcccCCCCcc
Q 027950          135 YNILKARGAKV---PKTKRTPMTVANPREVPE  163 (216)
Q Consensus       135 ~~~Ll~~g~~~---~~~g~t~l~~a~~~~~~~  163 (216)
                      .++|++.|+.+   |.+|.||-..|-..+.++
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraqqa~d~d  981 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQQAGDPD  981 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHHhcCCch
Confidence            99999999998   555999998887766555

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.41  E-value=1.4e-07  Score=77.32  Aligned_cols=83  Identities=23%  Similarity=0.185  Sum_probs=65.6

Q ss_pred             cccccCCCCcccccCCCCC-CCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHH
Q 027950           25 FSFGRQSSLDPIRRSPVQD-ELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVK  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~  103 (216)
                      .+-.+.+.++.-.+++..+ ..+......|.||||.|++.|+...+.+|+-.|+|++..|.+|.||+.+|...||.++.+
T Consensus       138 hasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~lae  217 (669)
T KOG0818|consen  138 HSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAE  217 (669)
T ss_pred             HHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHH
Confidence            4445666666665555544 444444556999999999999999999999999999999999999999999999987655


Q ss_pred             HHHh
Q 027950          104 LLLS  107 (216)
Q Consensus       104 ~Ll~  107 (216)
                      -|++
T Consensus       218 Rl~e  221 (669)
T KOG0818|consen  218 RLVE  221 (669)
T ss_pred             HHHH
Confidence            4443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.38  E-value=8.5e-07  Score=70.73  Aligned_cols=59  Identities=29%  Similarity=0.402  Sum_probs=55.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 027950           89 ALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK  147 (216)
Q Consensus        89 ~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~  147 (216)
                      -|..||+.|..+.+++|++.|.++|.+|++..+||.+|+..|+..++++|+++||--+.
T Consensus        39 elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r   97 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR   97 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc
Confidence            47889999999999999999999999999999999999999999999999999996543

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.37  E-value=4.2e-07  Score=80.54  Aligned_cols=107  Identities=24%  Similarity=0.239  Sum_probs=87.9

Q ss_pred             chHHHHHHH-HcCCHHHHHHHHhCCCCCCcc--CCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 027950           53 STMQLLFMA-CSGDVKGVEDLLNEGIDVNSI--DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  129 (216)
Q Consensus        53 ~~t~L~~a~-~~g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~  129 (216)
                      ....+..+. ......++..-..+++++|..  -..|.|+||.|+..+...++++|+++|++++..|..|++|+|.+...
T Consensus       620 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~  699 (785)
T KOG0521|consen  620 IKELLVKASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATAS  699 (785)
T ss_pred             hHHHHHHhccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhh
Confidence            344444444 345566666666777777754  35789999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCC---CCCchhcccCC
Q 027950          130 GNVEVYNILKARGAKVPKT---KRTPMTVANPR  159 (216)
Q Consensus       130 g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~  159 (216)
                      |+...+..++++|++.+..   |.+|+.+|...
T Consensus       700 g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  700 GHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccchhhhhccccccccccCccCcchhhHHhhh
Confidence            9999999999999998654   99999998554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.35  E-value=1.1e-06  Score=78.08  Aligned_cols=86  Identities=35%  Similarity=0.423  Sum_probs=73.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q 027950           53 STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV  132 (216)
Q Consensus        53 ~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~  132 (216)
                      |.++||.|+..|....+.+|++.|+++|..+..|.+|+|.+...|+...+..++.+|++.+..+..|..|+.+|....+.
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~  735 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANA  735 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccc
Confidence            57888999999999999999999999998888999999999999999988888889999999999999999988777655


Q ss_pred             HHHHHH
Q 027950          133 EVYNIL  138 (216)
Q Consensus       133 ~~~~~L  138 (216)
                      +++-++
T Consensus       736 d~~~l~  741 (785)
T KOG0521|consen  736 DIVLLL  741 (785)
T ss_pred             cHHHHH
Confidence            554333

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.31  E-value=1.3e-06  Score=72.98  Aligned_cols=67  Identities=30%  Similarity=0.296  Sum_probs=61.7

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCC
Q 027950           47 VPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID  113 (216)
Q Consensus        47 ~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~  113 (216)
                      -..+.+|.|+||.||..|++...++|+=+|+|+..+|..|.|+|.+|...|.-+|+..|+++|+...
T Consensus       655 t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  655 TCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             cccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            3456678999999999999999999999999999999999999999999999999999999997554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.29  E-value=2.3e-06  Score=62.13  Aligned_cols=69  Identities=20%  Similarity=0.170  Sum_probs=50.9

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhCC-CCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 027950           47 VPENLDSTMQLLFMACSGDVKGVEDLLNEG-IDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR  115 (216)
Q Consensus        47 ~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~  115 (216)
                      ...+..|+|+++.|+..|..+.+.+|+++| +.+...|..+.+++.+|-..|..++++.|.++..+-...
T Consensus         6 n~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p   75 (223)
T KOG2384|consen    6 NARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHP   75 (223)
T ss_pred             cchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCc
Confidence            344666888888888888888888888887 677777777888888888888888887777764443333

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.18  E-value=6.7e-06  Score=59.77  Aligned_cols=67  Identities=31%  Similarity=0.235  Sum_probs=63.1

Q ss_pred             CCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q 027950           76 GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYGNVEVYNILKARG  142 (216)
Q Consensus        76 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g  142 (216)
                      +.++|.+|..|+|++++|+..|+.+.+.+|+.+| +.+...|..|.+++.+|-+.|..+.++.|.+.-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            4578999999999999999999999999999999 999999999999999999999999999998863

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.14  E-value=7.8e-06  Score=71.41  Aligned_cols=117  Identities=26%  Similarity=0.262  Sum_probs=87.4

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhCC----CCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 027950           53 STMQLLFMACSGDVKGVEDLLNEG----IDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY  128 (216)
Q Consensus        53 ~~t~L~~a~~~g~~~~v~~Ll~~~----~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~  128 (216)
                      +.-....|++.|+...|+..++..    .++|..|..|.++|+.|..+.+.+++++|++.+...       ..+|-+|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHH
Confidence            444567788899998888888642    457788888999999999988999999998875443       247888888


Q ss_pred             cCCHHHHHHHHHCCCCC-------CCC------CCCchhcccCCCCcccccchhhHHHHhhcCCC
Q 027950          129 YGNVEVYNILKARGAKV-------PKT------KRTPMTVANPREVPEYELNPLELQVRKADGIT  180 (216)
Q Consensus       129 ~g~~~~~~~Ll~~g~~~-------~~~------g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~  180 (216)
                      .|..+++++++.+....       +..      +.||+.+||..++-+    ++++|+.+|+.+.
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyE----il~~Ll~kg~~i~  158 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFE----ILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchH----HHHHHHHcCCCCC
Confidence            88888888888774432       111      788888888777544    4777888887763

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.08  E-value=8.7e-06  Score=67.62  Aligned_cols=64  Identities=22%  Similarity=0.314  Sum_probs=57.1

Q ss_pred             CCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhC
Q 027950           45 LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK  108 (216)
Q Consensus        45 ~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  108 (216)
                      .....+..|.||||.|+..|+.++++.|+..|+++-.++..|++|||.|+..|+..++..++.+
T Consensus        47 ~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   47 VIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             eeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            3445577789999999999999999999999999999999999999999999999888766654

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.91  E-value=1.5e-05  Score=71.09  Aligned_cols=112  Identities=23%  Similarity=0.205  Sum_probs=77.7

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCchHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCHHHH
Q 027950           48 PENLDSTMQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLL-SKKANIDARDRWGSTAAAD  125 (216)
Q Consensus        48 ~~~~~~~t~L~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~  125 (216)
                      .....|++.+|.++..+..-.+..+++- +......+..|.-.+|+++ .++.+..-+++ -.|..++.+|..|+||||+
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccch
Confidence            3455688888888888888888888874 4444445556666777744 44555544444 4578888888899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCC---------CCCchhcccCCC
Q 027950          126 AKYYGNVEVYNILKARGAKVPKT---------KRTPMTVANPRE  160 (216)
Q Consensus       126 a~~~g~~~~~~~Ll~~g~~~~~~---------g~t~l~~a~~~~  160 (216)
                      |...|+..++..|++.|++-...         |.|+-.+|...+
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g  691 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANG  691 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhccc
Confidence            99999988888888777764221         666666654433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.88  E-value=3.9e-06  Score=74.70  Aligned_cols=136  Identities=19%  Similarity=0.124  Sum_probs=99.4

Q ss_pred             hhhhhhhhcccCCccccccccccccCCCCccc-ccCCCC-CCCCCCCCccchHHHHHHHHcCCHHHHHHHH-hCCCCCCc
Q 027950            5 RLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPI-RRSPVQ-DELTVPENLDSTMQLLFMACSGDVKGVEDLL-NEGIDVNS   81 (216)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll-~~~~~~~~   81 (216)
                      .++.-..+..+....++.....+.......-+ ...... +......+.++...+|. |..+++++.-+++ -.|..++.
T Consensus       558 ~~~~~~~~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i  636 (975)
T KOG0520|consen  558 LLKSISENLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDI  636 (975)
T ss_pred             HHhhHhhhccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeeccccccc
Confidence            44555556677777777777666554443333 333332 56666667777777888 6667777766665 46788999


Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 027950           82 IDLDGRTALHIAACEGHVEVVKLLLSKKANIDA------RDRWGSTAAADAKYYGNVEVYNILKAR  141 (216)
Q Consensus        82 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~------~~~~g~t~L~~a~~~g~~~~~~~Ll~~  141 (216)
                      +|..|+||||||+..|+..++..|+..|++...      .+..|.|+-..|..+|+..+..+|-+.
T Consensus       637 ~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  637 RDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             ccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999999999999987765543      334688999999999999888877665

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.78  E-value=9.2e-05  Score=64.97  Aligned_cols=97  Identities=23%  Similarity=0.195  Sum_probs=78.1

Q ss_pred             CCCCC-CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCC----------
Q 027950           45 LTVPE-NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID----------  113 (216)
Q Consensus        45 ~~~~~-~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~----------  113 (216)
                      .++++ ++-|.++|+.|..+.+.+++..|++++..+       .-+|.+|+..|..++|+.++.+.....          
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~  125 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANS  125 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCc
Confidence            34444 677999999999999999999999986554       247899999999999999998633221          


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 027950          114 ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT  148 (216)
Q Consensus       114 ~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~  148 (216)
                      ..-.-+-||+..|+..++.||++.|+.+|+++...
T Consensus       126 ~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  126 PHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             ccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            11234679999999999999999999999998543

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.51  E-value=0.00021  Score=59.28  Aligned_cols=63  Identities=25%  Similarity=0.236  Sum_probs=51.6

Q ss_pred             HHHHHHHHhCCCCCCc------cCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 027950           66 VKGVEDLLNEGIDVNS------IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY  128 (216)
Q Consensus        66 ~~~v~~Ll~~~~~~~~------~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~  128 (216)
                      ...+.+|.+++++.|.      .+....|+||+|+.+|...++.+|++.|+|+..+|..|.||...+..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~n  472 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSAN  472 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCccccccc
Confidence            5566777777766653      24456799999999999999999999999999999999999988873

>smart00248 ANK ankyrin repeats

Probab=97.27  E-value=0.00078  Score=32.69  Aligned_cols=27  Identities=37%  Similarity=0.491  Sum_probs=14.0

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCC
Q 027950          119 GSTAAADAKYYGNVEVYNILKARGAKV  145 (216)
Q Consensus       119 g~t~L~~a~~~g~~~~~~~Ll~~g~~~  145 (216)
                      |.||+|+++..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            345555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.18  E-value=0.00096  Score=32.35  Aligned_cols=27  Identities=67%  Similarity=0.938  Sum_probs=15.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhCCCCC
Q 027950           86 GRTALHIAACEGHVEVVKLLLSKKANI  112 (216)
Q Consensus        86 g~t~L~~a~~~~~~~~~~~Ll~~g~~~  112 (216)
                      |.||+|+|+..++.+++++|++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            445666666666666666666655543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.76  E-value=0.0018  Score=53.98  Aligned_cols=66  Identities=17%  Similarity=0.161  Sum_probs=52.6

Q ss_pred             CHHHHHHHHhCCCCCCCC------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---CCCCCchhcccCCCCcc
Q 027950           98 HVEVVKLLLSKKANIDAR------DRWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVANPREVPE  163 (216)
Q Consensus        98 ~~~~~~~Ll~~g~~~~~~------~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~---~~g~t~l~~a~~~~~~~  163 (216)
                      -.+.+++|.+.+.+.|..      +.--.|+||+|+.+|...++.+|++.|+|..   ..|+||..++...+...
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nkdVk~  477 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANKDVKS  477 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccHHHHH
Confidence            366789999988766432      3345699999999999999999999999974   44999999988655444

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.30  E-value=0.13  Score=38.97  Aligned_cols=94  Identities=17%  Similarity=0.178  Sum_probs=66.2

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhCC----CCCCccCCCCchHHHHHHH--cCCHHHHHHHHhCC-CCCCC---CCCCCCC
Q 027950           52 DSTMQLLFMACSGDVKGVEDLLNEG----IDVNSIDLDGRTALHIAAC--EGHVEVVKLLLSKK-ANIDA---RDRWGST  121 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~v~~Ll~~~----~~~~~~~~~g~t~L~~a~~--~~~~~~~~~Ll~~g-~~~~~---~~~~g~t  121 (216)
                      +-.+++-++..++..+++.+|+.+-    .++-.. ..+.--+.++.+  ..+..++++++.+| +++|.   +...|.|
T Consensus       178 dA~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdt  256 (284)
T PF06128_consen  178 DAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDT  256 (284)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcch
Confidence            3456777777777888888888652    222111 112223445444  34778899999997 56665   3568999


Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC
Q 027950          122 AAADAKYYGNVEVYNILKARGAKVP  146 (216)
Q Consensus       122 ~L~~a~~~g~~~~~~~Ll~~g~~~~  146 (216)
                      -|.-|...++.+++.+|+++||-.+
T Consensus       257 MLDNA~Ky~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  257 MLDNAMKYKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             HHHhHHhcCcHHHHHHHHHcCcccc
Confidence            9999999999999999999999543

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=88.93  E-value=0.6  Score=35.43  Aligned_cols=94  Identities=17%  Similarity=0.183  Sum_probs=56.5

Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC------CCCchhcccC---CCCcccccchhhHHHHh
Q 027950          105 LLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT------KRTPMTVANP---REVPEYELNPLELQVRK  175 (216)
Q Consensus       105 Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~------g~t~l~~a~~---~~~~~~~~~~~~~l~~~  175 (216)
                      |+++|+.-|..|..+.|+=-.|.+.|+.+..+.|++.|+.....      +++|-..+..   ....++..+  .++-..
T Consensus         1 lle~ga~wn~id~~n~t~gd~a~ern~~rly~~lv~~gv~Selll~~l~rn~s~n~~~~a~~~qd~ls~~~D--~ll~~~   78 (271)
T KOG1709|consen    1 LLEYGAGWNFIDYENKTVGDLALERNQSRLYRRLVEAGVPSELLLFALGRNESPNADGNAPYLQDYLSTAED--TLLDSL   78 (271)
T ss_pred             CcccCCCccccChhhCCchHHHHHccHHHHHHHHHHcCCchhhhhhccccccCccccccchHHHHHHhhhhh--HHHhhc
Confidence            35677777777777888888888888888888888877764321      3333212111   111111111  134455


Q ss_pred             hcCCCCCCCcchHHHHHHHHHHHcC
Q 027950          176 ADGITKAWPVPLIFVHYVILLRQAG  200 (216)
Q Consensus       176 g~~~~~~~~~~l~~~~~~~~l~~~g  200 (216)
                      +..+-..+.||++.++...+..+.|
T Consensus        79 ~k~VMm~WEtpiMha~A~ai~tkgg  103 (271)
T KOG1709|consen   79 GKGVMMRWETPIMHALAEAISTKGG  103 (271)
T ss_pred             cchhhhhhhhHHHHHHHHHHhhCCc
Confidence            6666788999999887766554443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.43  E-value=1.2  Score=33.99  Aligned_cols=56  Identities=29%  Similarity=0.328  Sum_probs=44.8

Q ss_pred             HHHHHHH--cCCHHHHHHHHhCC-CCCCcc---CCCCchHHHHHHHcCCHHHHHHHHhCCCC
Q 027950           56 QLLFMAC--SGDVKGVEDLLNEG-IDVNSI---DLDGRTALHIAACEGHVEVVKLLLSKKAN  111 (216)
Q Consensus        56 ~L~~a~~--~g~~~~v~~Ll~~~-~~~~~~---~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~  111 (216)
                      -+-++..  ..+..++.+++.+| +++|.+   -.+|.|-|--|...++.+++.+|+++|+-
T Consensus       218 dieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  218 DIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             hHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            4445443  35678889999998 567753   46899999999999999999999999983

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.40  E-value=2.4  Score=26.33  Aligned_cols=47  Identities=15%  Similarity=0.213  Sum_probs=36.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhC
Q 027950           55 MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK  108 (216)
Q Consensus        55 t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  108 (216)
                      .-+..|+..|+.++++.+++.+ .++      ...+..|+...+.+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            4567888899999999888654 221      3468888888888999988876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=81.17  E-value=3.6  Score=25.56  Aligned_cols=48  Identities=23%  Similarity=0.270  Sum_probs=39.0

Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 027950           87 RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKAR  141 (216)
Q Consensus        87 ~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~  141 (216)
                      ...+..|...|+.++++.+++.+ .++      ...+..|+..-+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34678999999999999998764 121      3579999999999999999975

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=80.67  E-value=4.9  Score=29.70  Aligned_cols=82  Identities=17%  Similarity=0.104  Sum_probs=54.9

Q ss_pred             chHHHHHHHHcCCHHHH----HHHHhCCCCCCccCC--CCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 027950           53 STMQLLFMACSGDVKGV----EDLLNEGIDVNSIDL--DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  126 (216)
Q Consensus        53 ~~t~L~~a~~~g~~~~v----~~Ll~~~~~~~~~~~--~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a  126 (216)
                      ..+-+-.|...++++..    +.++++...-...|.  -=..-|.+|+..|-.+.+--.+.+|.+++.      ++|..|
T Consensus       104 ~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~------~vls~A  177 (192)
T PF03158_consen  104 PEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQA  177 (192)
T ss_pred             chhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHH
Confidence            34556667777776553    234444322111111  111357789999999999888999987764      689999


Q ss_pred             HHcCCHHHHHHHHH
Q 027950          127 KYYGNVEVYNILKA  140 (216)
Q Consensus       127 ~~~g~~~~~~~Ll~  140 (216)
                      +..++..++.+++.
T Consensus       178 v~ynhRkIL~yfi~  191 (192)
T PF03158_consen  178 VKYNHRKILDYFIR  191 (192)
T ss_pred             HHhhHHHHHHHhhc
Confidence            99999999998874

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-14
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-14
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-13
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-13
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-13
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		4e-13
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-13
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		7e-13
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		5e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-12
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-12
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		8e-12
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-12
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		5e-11
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		8e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		4e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-10
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		5e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		6e-10
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-10
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-09
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-09
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-09
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-09
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-09
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		1e-08
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-08
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		4e-08
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-08
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		9e-08
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-07
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-07
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-07
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-07
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-07
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-07
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		3e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		3e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		3e-07
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		4e-07
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		6e-07
1uoh_A	226	Human Gankyrin Length = 226		1e-06
1uoh_A	226	Human Gankyrin Length = 226		4e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		4e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-06
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-06
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-06
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-06
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		3e-06
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		3e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		7e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		7e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		1e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		3e-05
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-05
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		1e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-04
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		1e-04
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		1e-04
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		1e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		6e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 56  QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           +L+  A +G+   V+DL+  G DVN+ D DGRT LH AA EGH E+VKLL+SK A+++A+
Sbjct: 7   RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
           D  G T    A   G+ E+  +L ++GA V       RTP+  A
Sbjct: 67  DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYA 110

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/104 (44%), Positives = 63/104 (60%), Gaps = 3/104 (2%)
Query: 56  QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           +L+  A +G+   V+DL+  G DVN+ D DGRT LH AA  GH EVVKLL+SK A+++A+
Sbjct: 7   RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
           D  G T    A   G+ EV  +L ++GA V       RTP+  A
Sbjct: 67  DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA 110

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 65/105 (61%), Gaps = 5/105 (4%)
Query: 56  QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           +L+  A +G+   V+DLL  G DVN+ D DG+T LH+AA  GH EVVKLLLS+ A+ +A+
Sbjct: 7   RLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVA 156
           D  G T    A   G+ EV  +L ++GA  P  K    +TP+ +A
Sbjct: 67  DSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLA 110

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 59/94 (62%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D    L   A +G  + V+ LL++G DVN+   DG T LH+AA  GH E+VKLLL+K A+
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           ++AR + G+T    AK  G+ E+  +L A+GA V
Sbjct: 68  VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADV 101

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   A +G ++ V+ LL  G DVN+ D +GRT LH+AA  GH+EVVKLLL   A+++A+D
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
           + G T    A   G++EV  +L   GA V    K  RTP+ +A
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVA 156
           ++A D  GST    A   G++E+  +L   GA V        TP+ +A
Sbjct: 73  VNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/105 (43%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 56  QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           +L+  A +G+   V+DLL  G D N+ D DGRT LH AA  GH E+VKLLLSK A+ +A+
Sbjct: 7   RLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK 66
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVA 156
           D  G T    A   G+ E+  +L ++GA  P  K    RTP+  A
Sbjct: 67  DSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYA 110

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVA 156
           ++A D  GST    A   G++E+  +L   GA V        TP+ +A
Sbjct: 73  VNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLA 120

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 56/103 (54%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G D N+ D  GRT LH+AA  GH+E+V++LL   A+
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 154
           ++A D  G+T    A   G++E+  +L   GA V     T +T
Sbjct: 61  VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGIT 103

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 55/94 (58%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D    L   A +G ++ VE LL  G DVN+ DL G T LH+AA  GH+E+V++LL   A+
Sbjct: 46  DGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGAD 105
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           ++A D  G T    A  YG++E+  +L   GA V
Sbjct: 106 VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADV 139

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D    L   A  G ++ VE LL  G DVN+ D DG T LH+AA EGH+E+V++LL   A+
Sbjct: 34  DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
           ++A+D+ G T    A   G++E+  +L   GA V    K  +TP  +A
Sbjct: 94  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D    L   A  G ++ VE LL  G DVN+ D DG T LH+AA EGH+E+V++LL   A+
Sbjct: 34  DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 93
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
           ++A+D+ G T    A   G++E+  +L   GA V    K  +TP  +A
Sbjct: 94  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLA 141

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 62/108 (57%), Gaps = 3/108 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G+T LH+AA +GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVA 156
           ++A D+ G T    A  YG++E+  +L   GA V  T     TP+ +A
Sbjct: 73  VNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLA 120

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 56/99 (56%)
Query: 56  QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           +LL  A +G    V  L+  G DVN+ D  G T LH+AA  GH+E+V++LL   A++DA 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS 76
Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 154
           D +G T    A Y+G++E+  +L   GA V       MT
Sbjct: 77  DVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMT 115

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 55/87 (63%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   A +G ++ V+ LL  G DVN+ D +GRT LH+AA  GH+EVVKLLL   A+++A+D
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
           + G T    A   G++EV  +L   GA
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 56/94 (59%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D    L   A  G ++ VE LL  G DVN+ D DG T LH+AA EGH+E+V++LL   A+
Sbjct: 46  DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 105
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           ++A+D+ G T    A   G++E+  +L   GA V
Sbjct: 106 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D +G T LH+AA  G +E+V++LL   A+
Sbjct: 5   DLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD 64
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVA 156
           ++A D  G T    A Y G++E+  +L   GA V    R   TP+ +A
Sbjct: 65  VNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 3/108 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN++D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK---TKRTPMTVA 156
           +DA D +G T    A   G++E+  +L   GA V     T  TP+ +A
Sbjct: 73  VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLA 120

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 62/111 (55%), Gaps = 3/111 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D+ G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPR 159
           ++A D  GST    A ++G++E+  +L   GA V        TP+ +A  R
Sbjct: 73  VNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANR 123

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
           ++A D  GST    A   G++E+  +L   GA V        TP+ +A
Sbjct: 73  VNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLA 120

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 54/94 (57%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL    +G    V  L+  G DVN++D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           ++ARD WG T    A   G++E+  +L   GA V
Sbjct: 73  VNARDIWGRTPLHLAATVGHLEIVEVLLEYGADV 106

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK---RTPMTVA 156
           ++A D  G T    A  +G++E+  +L   GA V        TP+ +A
Sbjct: 73  VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T LH+AA  GH E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPR 159
           ++ARD  G T    A   G++E+  +L   GA V        TP+ +A  R
Sbjct: 73  VNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADR 123

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 57/103 (55%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN++D DG T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 154
           ++A D +G T    A   G++E+  +L   GA V    +   T
Sbjct: 73  VNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKT 115

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYE 165
           ++A D +G+T    A   G++E+  +L   GA V        T   P  +  Y+
Sbjct: 73  VNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFT---PLHLAAYD 123

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 54/83 (65%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   A  G ++ VE LL  G DVN+ D+ GRT LH+AA  GH+E+V++LL   A+++A+D
Sbjct: 51  LHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQD 110
Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
           ++G TA   +   GN ++  IL+
Sbjct: 111 KFGKTAFDISIDNGNEDLAEILQ 133

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 72  LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 131
           L+  G DVN++D  G T LH+AA  GH+E+V++LL   A+++A D WG T    A   G+
Sbjct: 33  LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGH 92
Query: 132 VEVYNILKARGAKV 145
           +E+  +L   GA V
Sbjct: 93  LEIVEVLLEYGADV 106

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 55/88 (62%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D DG T LH+AA EGH+E+V++LL   A+
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
           ++A+D++G TA   +   GN ++  IL+
Sbjct: 61  VNAQDKFGKTAFDISIDNGNEDLAEILQ 88

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPR 159
           ++A+D  G T    A   G++E+  +L   GA V  +     TP+ +A  R
Sbjct: 73  VNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKR 123

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T LH+    GH+E++++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK---RTPMTVA 156
           ++A D+ G T    A Y G++E+  +L   GA V        TP+ +A
Sbjct: 73  VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLA 120

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 55/104 (52%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T LH+AA   H+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTV 155
           ++A D  GST    A  +G++E+  +L   GA V    +   T 
Sbjct: 73  VNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTA 116

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 53/103 (51%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T LH+AA   H+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 154
           ++A D  G T       YG++E+  +L   GA V    +   T
Sbjct: 73  VNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKT 115

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 54/103 (52%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T L++A   GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 154
           ++A D  G T    A + G++E+  +L   GA V    +   T
Sbjct: 73  VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKT 115

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVA 156
           ++A D  G T    A   G++EV  +L   GA V        TP+ +A
Sbjct: 73  VNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLA 120

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 53/88 (60%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DV + D +G T LH+AA  GH+EVVKLLL   A+
Sbjct: 5   DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
           ++A+D++G TA   +   GN ++  IL+
Sbjct: 65  VNAQDKFGKTAFDISIDNGNEDLAEILQ 92

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 52/88 (59%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L+  G DV + D +G T LH+AA  GH+EVVKLLL   A+
Sbjct: 23  DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
           + A+D++G TA   +   GN ++  IL+
Sbjct: 83  VXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 3/104 (2%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   A    V+    LL  G   N+  + G T LH+AA EGH E+V LLLSK+AN +  +
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVAN 157
           + G T        G+V V ++L   G  V  T R   TP+ VA+
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D   +LL  A +G    V  L   G DVN+ D  G T LH+AA  GH+E+V++LL   A+
Sbjct: 13  DLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           ++A    G T    A +  ++E+  +L   GA V
Sbjct: 73  VNATGNTGRTPLHLAAWADHLEIVEVLLKHGADV 106

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 65/149 (43%), Gaps = 7/149 (4%)
Query: 10  MSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGV 69
           M    +   R   ++   G ++ L+P    PV          D     L    SGD + V
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEP----PVVKRKKTKVKFDDGAVFLAACSSGDTEEV 56
Query: 70  EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 129
             LL  G D+N  ++DG TALH A  + +V++VK L+   ANI+  D  G      A   
Sbjct: 57  LRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC 116
Query: 130 GNVEVYNILKARGAKVPKTKR---TPMTV 155
           G +++   L ++GA V        TP+ +
Sbjct: 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 107
           N ++  QLL  A +GDV+ V+ L      VN  D++GR  T LH AA    V VV+ LL 
Sbjct: 7   NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 65
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY 164
             A++ A+D+ G     +A  YG+ EV  +L   GA V      K TP+  A  +   +Y
Sbjct: 66  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK--GKY 123
Query: 165 ELNPLELQ 172
           E+  L LQ
Sbjct: 124 EICKLLLQ 131

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWG 119
           A +G +  ++ LL    DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G
Sbjct: 78  ARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Query: 120 STAAADAKYYGNVEVYNILKARGA 143
            TA   A+ YG  EV ++++A GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 107
           N ++  QLL  A +GDV+ V+ L      VN  D++GR  T LH AA    V VV+ LL 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY 164
             A++ A+D+ G     +A  YG+ EV  +L   GA V      K TP+  A  +   +Y
Sbjct: 64  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK--GKY 121
Query: 165 ELNPLELQ 172
           E+  L LQ
Sbjct: 122 EICKLLLQ 129

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGR--TALHIAACEGHVEVVKLLLS 107
           N ++  QLL  A +GDV+ V+ L      VN  D++GR  T LH AA    V VV+ LL 
Sbjct: 9   NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 67
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY 164
             A++ A+D+ G     +A  YG+ EV  +L   GA V      K TP+  A  +   +Y
Sbjct: 68  HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK--GKY 125
Query: 165 ELNPLELQ 172
           E+  L LQ
Sbjct: 126 EICKLLLQ 133

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWG 119
           A +G +  ++ LL    DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G
Sbjct: 78  ARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Query: 120 STAAADAKYYGNVEVYNILKARGA 143
            TA   A+ YG  EV ++++A GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   +  GD+  VE LL  G D N  D  G T LH A   GH++VV+LLL  KA ++   
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
               +   DA   G+V++  +L + GA
Sbjct: 74  YQNDSPLHDAAKNGHVDIVKLLLSYGA 100

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWG 119
           A +G +  ++ LL    DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G
Sbjct: 78  ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Query: 120 STAAADAKYYGNVEVYNILKARGA 143
            TA   A+ YG  EV ++++A GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWG 119
           A +G +  ++ LL    DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G
Sbjct: 78  ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Query: 120 STAAADAKYYGNVEVYNILKARGA 143
            TA   A+ YG  EV ++++A GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWG 119
           A +G +  ++ LL    DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G
Sbjct: 78  ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG 137
Query: 120 STAAADAKYYGNVEVYNILKARGA 143
            TA   A+ YG  EV ++++A GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 63  SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 122
           +GD+  V+D + +G DVN     GR  LH AA  G +E+++ LL K A+I+A D+   T 
Sbjct: 17  NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 76
Query: 123 AADAKYYGNVEVYNILKARGAKVPKTKRTP 152
              A Y G+V    +L ++GA   KT + P
Sbjct: 77  LLSAVYEGHVSCVKLLLSKGAD--KTVKGP 104

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 56  QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGR--TALHIAACEGHVEVVKLLLSKKANID 113
           +LL  A SG+ + +  LL   ++VN    DGR  T LH+AA    V +V+LLL   A++ 
Sbjct: 27  ELLEAARSGNEEKLMALLTP-LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85
Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           A+D+ G     +A  YG+ EV  +L   GA V
Sbjct: 86  AKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 63  SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 122
           +GD+  V+D + +G DVN     GR  LH AA  G +E+++ LL K A+I+A D+   T 
Sbjct: 12  NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 71
Query: 123 AADAKYYGNVEVYNILKARGAKVPKTKRTP 152
              A Y G+V    +L ++GA   KT + P
Sbjct: 72  LLSAVYEGHVSCVKLLLSKGAD--KTVKGP 99

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 49  ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
           ++++ +  L++   +  +   E LL++G +VN+ D  G+T L  +   G+ E+   LL  
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTV-ANPREVPEYELN 167
            AN++ R+  G T    A  YG  E+   L   GA +     T +T  A+ R     E+ 
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183
Query: 168 PLELQVRKA 176
            +  +VR+A
Sbjct: 184 KIFTEVRRA 192

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 21  NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDV 79
           N M  +      L+ ++ S + D+ L    + DS   L +   +G  + VE LL  G+ V
Sbjct: 7   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 80  NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
           N  D  G + LHIAA  G  E+VK LL K A ++A ++ G T
Sbjct: 67  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 108

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 49  ENLDSTMQLLFMACSGDVKGV-EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
           E   S + +  +A SG ++ + E +L +       D D RTALH A   GH E+V+ LL 
Sbjct: 2   EGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPREVPEY 164
               ++ +D  G +    A   G  E+   L  +GA+V    +   TP+  A  +   E 
Sbjct: 62  LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 121
Query: 165 ELNPLE 170
            +  LE
Sbjct: 122 AVMLLE 127

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 21  NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDV 79
           N M  +      L+ ++ S + D+ L    + DS   L +   +G  + VE LL  G+ V
Sbjct: 8   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 67
Query: 80  NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
           N  D  G + LHIAA  G  E+VK LL K A ++A ++ G T
Sbjct: 68  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCT 109

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 49  ENLDSTMQLLFMACSGDVKGV-EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
           E   S + +  +A SG ++ + E +L +       D D RTALH A   GH E+V+ LL 
Sbjct: 3   EGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 62
Query: 108 KKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR---TPMTVANPREVPEY 164
               ++ +D  G +    A   G  E+   L  +GA+V    +   TP+  A  +   E 
Sbjct: 63  LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEI 122
Query: 165 ELNPLE 170
            +  LE
Sbjct: 123 AVMLLE 128

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           LL  +  G+   V+ ++ E  D +  + +G TALH A C GH E+VK L+    N++A D
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA 156
             G T    A    NV+V   L   GA V     + M  A
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR- 115
            L  A +G VK ++  L++G DVN  D  G TA   AA  G V+ +K L  + AN++ R 
Sbjct: 76  FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135
Query: 116 ---------DRWGSTAAADAKYYGNVEVYNIL 138
                     + G+TA  DA   G+VEV  IL
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKIL 167

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 48/100 (48%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           LL  +  G+   V+ ++ E  D +  + +G TALH A C GH E+VK L+    N++A D
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA 156
             G T    A    NV+V   L   GA V     + M  A
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTA 140

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR- 115
            +  A +G VK ++  L++G DVN  D  G TA   AA  G V+ +K L  + AN++ R 
Sbjct: 96  FILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 155
Query: 116 ---------DRWGSTAAADAKYYGNVEVYNIL 138
                     + G+TA  DA   G+VEV  IL
Sbjct: 156 KTKEDQERLRKGGATALMDAAEKGHVEVLKIL 187

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   A +G  + V+ LL +G  VN+++ +G T LH AA +   E+  +LL   AN DA+D
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 117 RWGSTAAADAKYYGNVEVYNIL---KARGAKVPKTKRTPMTVANPRE 160
            + +TA   A   GN+++ +IL   KA          TP+ +A   E
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 21  NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDV 79
           N M  +      LD ++   + D+ L    + DS   L +   +G  + VE LL  G+ V
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 80  NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
           N  D  G + LHIAA  G  E+VK LL K A+++A ++ G T
Sbjct: 67  NDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCT 108

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 56/107 (52%), Gaps = 3/107 (2%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   A +G  + V+ LL +G  VN+++ +G T LH AA +   E+  +LL   AN DA+D
Sbjct: 77  LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136
Query: 117 RWGSTAAADAKYYGNVEVYNIL---KARGAKVPKTKRTPMTVANPRE 160
            + +TA   A   GN+++ +IL   KA          TP+ +A   E
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE 183

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +AC  G  + V+ LL+     N  DL G T L  A   GH E+V LLL   A+I+A +
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 156
             G+TA  +A    +V V  +L   GA V    K +RT +  A
Sbjct: 183 NKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 52  DSTMQLLFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA 110
           D     L  AC  G    VE L+  G  +N ++    T LH+AA  GH ++V+ LL  KA
Sbjct: 37  DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Query: 111 NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYEL 166
           +I+A +  G+     A ++G  +V   L A GA V    +      +  + P  EL
Sbjct: 97  DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL 152

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 25  FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMAC-SGDVKGVEDLLNEGIDVNSID 83
           F+  R+ +   +R      E  + +  D     L  AC  G    VE L+  G  +N ++
Sbjct: 5   FTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN 64
Query: 84  LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA 143
               T LH+AA  GH ++V+ LL  KA+I+A +  G+     A ++G  +V   L A GA
Sbjct: 65  RGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGA 124
Query: 144 KVPKTKRTPMTVANPREVPEYEL 166
            V    +      +  + P  EL
Sbjct: 125 LVSICNKYGEMPVDKAKAPLREL 147

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 22  NMRFSFGRQSSLDPIRRSPVQDELTVPE-------NLDSTMQ-----LLFMACSGDVKGV 69
           +M F    Q+   P+  +     + +         N+D+  +     L+  A +  ++ V
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60
Query: 70  EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTAAADAKY 128
           + L+  G  V+  D +G T LH+AA +GH EVV+ LLS  + +++ +D  G T    A  
Sbjct: 61  KYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120
Query: 129 YGNVEVYNILKARGAKV 145
           Y +V++  +L ++G+ +
Sbjct: 121 YKHVDLVKLLLSKGSDI 137

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 46/93 (49%)
Query: 53  STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
            T  L   A  G     E LL  G+  ++     RT LH+AA EGH  +V++LL   A++
Sbjct: 34  GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADV 93
Query: 113 DARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           +A+D    TA   A  + + EV  +L   GA V
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIKYGADV 126

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS-KKANIDAR 115
           L+     G V  V+ LL    DVN  D DG TAL  A   GH E+  LLL+    +I   
Sbjct: 187 LMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLT 246
Query: 116 DRWGSTAAADAKYYGNVEVYNILKAR 141
           DR GSTA   A   G  E+ ++L +R
Sbjct: 247 DRDGSTALMVALDAGQSEIASMLYSR 272

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 58  LFMACSGDVKG-VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A    ++G VEDL+    D+N+ D  G+TALH AA   + E V +LL   AN DA+D
Sbjct: 122 LILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD 181

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L++ +  G+++ V  LL  G D + +  +  +AL +A+  G+ ++V LLL +  +I+  D
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
             G T    A +  +V+    L ARGA +     +  TPM +A
Sbjct: 100 WNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLA 142

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 58  LFMACSGDVKG-VEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           L+ AC G  K  VE L  +  I++N  +  G TALH AA +G+ ++V+LLL+K A  D R
Sbjct: 110 LYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169
Query: 116 D 116
           +
Sbjct: 170 N 170

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D+   L+    +  +   E LL  G +VN  D  GR  LH A   GH  +  L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
           + ARD  G      A    N ++  +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D+   L+    +  +   E LL  G +VN  D  GR  LH A   GH  +  L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
           + ARD  G      A    N ++  +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 39/88 (44%)
Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           D+   L+    +  +   E LL  G +VN  D  GR  LH A   GH  +  L L + A+
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGAD 293
Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILK 139
           + ARD  G      A    N ++  +L+
Sbjct: 294 LGARDSEGRDPLTIAMETANADIVTLLR 321

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L++ +  G+++ V  LL  G D + +  +  +AL +A+  G+ ++V LLL +  +I+  D
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
             G T    A    +V+    L ARGA +     +  TPM +A
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
Query: 18  PRRNNMRFSFGRQSSLDPIRRSPVQD-----ELTVPENLDSTMQLLFM---ACSGDVKGV 69
           PR ++M    G+Q  +D  + +  +D      L+ P   D+      M   A  G    +
Sbjct: 16  PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSL 75
Query: 70  EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY 129
            +L+++G  VN I  D  + LH A   GH+  VK+LL   A ++       T   +A   
Sbjct: 76  RNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS 135
Query: 130 GNVEVYNILKARGAKV 145
           G+ +  N+L   GA V
Sbjct: 136 GSWDCVNLLLQHGASV 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-28
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-25
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-09
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-24
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-27
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-23
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-27
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-27
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-27
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-24
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-27
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-26
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-24
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-05
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-26
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-26
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-25
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-26
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-24
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-22
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-26
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-25
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-26
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-24
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-24
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-23
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-22
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-26
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-25
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-24
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-25
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-24
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-23
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-25
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-24
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-25
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-24
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-25
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-25
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-25
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-09
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-23
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-22
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-21
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-25
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-24
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-23
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-22
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-25
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-24
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-23
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-25
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-21
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-25
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-25
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-24
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-24
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-22
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-23
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-20
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-24
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-24
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-23
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-22
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-20
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-23
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-23
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-22
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-23
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-16
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-21
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-21
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-07
2rfa_A	232	Transient receptor potential cation channel subfa	3e-21
2rfa_A	232	Transient receptor potential cation channel subfa	1e-18
2rfa_A	232	Transient receptor potential cation channel subfa	2e-18
2rfa_A	232	Transient receptor potential cation channel subfa	1e-17
2rfa_A	232	Transient receptor potential cation channel subfa	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	9e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-19
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	7e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-15
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-11
2pnn_A	273	Transient receptor potential cation channel subfa	1e-17
2pnn_A	273	Transient receptor potential cation channel subfa	1e-13
2pnn_A	273	Transient receptor potential cation channel subfa	3e-12
2pnn_A	273	Transient receptor potential cation channel subfa	1e-11
2pnn_A	273	Transient receptor potential cation channel subfa	3e-08
2etb_A	256	Transient receptor potential cation channel subfam	4e-16
2etb_A	256	Transient receptor potential cation channel subfam	2e-15
2etb_A	256	Transient receptor potential cation channel subfam	2e-14
2etb_A	256	Transient receptor potential cation channel subfam	1e-12
2etb_A	256	Transient receptor potential cation channel subfam	2e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-07
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-14
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-14
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-09
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-13
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	7e-11
3uo9_A	534	Glutaminase kidney isoform, mitochondrial; hydrola	6e-06

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  103 bits (260), Expect = 1e-28
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A   GD+  VE LL  G D N  D  G T LH A   GH++VV+LLL  KA ++   
Sbjct: 14  LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
               +   DA   G+V++  +L + GA           P+   
Sbjct: 74  YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 95.2 bits (238), Expect = 2e-25
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  AC+ G +K VE LL     VN+      + LH AA  GHV++VKLLLS  A+ +A +
Sbjct: 47  LHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
            +G              +  + +   +
Sbjct: 107 IFGLRPVDYTDDESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 86.7 bits (216), Expect = 4e-22
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 76  GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 135
           GID  + +  G T LHIA+ +G +  V+ LL   ++ + +D  G T   +A  +G+++V 
Sbjct: 1   GIDPFT-NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVV 59

Query: 136 NILKARGAKV 145
            +L    A V
Sbjct: 60  ELLLQHKALV 69

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.4 bits (153), Expect = 8e-13
 Identities = 11/51 (21%), Positives = 24/51 (47%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           A +G V  V+ LL+ G   N++++ G   +     E    ++ L    +++
Sbjct: 84  AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS 134

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  102 bits (256), Expect = 4e-28
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
            ++   +GD+  V+D + +G DVN     GR  LH AA  G +E+++ LL K A+I+A D
Sbjct: 11  FMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD 70

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVANPREVPE 163
           +   T    A Y G+V    +L ++GA    K     T     + + +  
Sbjct: 71  KHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 88.6 bits (221), Expect = 5e-23
 Identities = 25/66 (37%), Positives = 32/66 (48%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           +E LL +G D+N+ D    T L  A  EGHV  VKLLLSK A+   +   G TA      
Sbjct: 56  LEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115

Query: 129 YGNVEV 134
                +
Sbjct: 116 QAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 77.8 bits (193), Expect = 7e-19
 Identities = 12/61 (19%), Positives = 23/61 (37%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 144
                   A   G ++ VK  ++K  +++     G      A   G +E+   L  +GA 
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD 65

Query: 145 V 145
           +
Sbjct: 66  I 66

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 52.4 bits (127), Expect = 2e-09
 Identities = 13/47 (27%), Positives = 20/47 (42%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVK 103
           LL     G V  V+ LL++G D      DG TA      +    +++
Sbjct: 77  LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  104 bits (261), Expect = 3e-27
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 3/102 (2%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           +  A   G    + +L+++G  VN I  D  + LH A   GH+  VK+LL   A ++   
Sbjct: 63  MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVT 122

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTK--RTPMTVA 156
               T   +A   G+ +  N+L   GA V       +P+  A
Sbjct: 123 ADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEA 164

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 94.1 bits (235), Expect = 2e-23
 Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 10/105 (9%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           LF AC SG    V  LL  G  V   + D  + +H AA  GHVE V  L++   NID + 
Sbjct: 129 LFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 187

Query: 117 RWGSTA---AADAKYYGNVEVYNILKARGAKVPKTK--RTPMTVA 156
               T    A              L   GA V + K   +P+   
Sbjct: 188 SHLGTPLYLAC---ENQQRACVKKLLESGADVNQGKGQDSPLHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 93.7 bits (234), Expect = 2e-23
 Identities = 24/93 (25%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L++AC       V+ LL  G DVN       + LH        E+  LL+   A+  A++
Sbjct: 194 LYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKN 252

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTK 149
             G            +     L+  GA +PK K
Sbjct: 253 AEGKRPVELVPPESPLAQL-FLEREGASLPKPK 284

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 89.5 bits (223), Expect = 7e-22
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           +  A   G V+ V  L+  G +++       T L++A        VK LL   A+++   
Sbjct: 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-G 219

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           +   +         + E+  +L   GA    K    + P+ + 
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.3 bits (207), Expect = 2e-19
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 32/118 (27%)

Query: 60  MACS-GDVKGVEDLLNEGIDVNSIDL-------------------------------DGR 87
           M  S         L+  G  + S+D                                   
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 88  TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           + +H AA  GH   ++ L+S+   ++       +   +A   G++    IL   GA+V
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV 118

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.1 bits (126), Expect = 2e-08
 Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 92  IAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK-- 149
           + +   H      L+ + +++ + D         +K  G  +   I       +      
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDG-SKPAGPRDFPGIRLLSNPLMGDAVSD 59

Query: 150 RTPMTVA 156
            +PM  A
Sbjct: 60  WSPMHEA 66

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  100 bits (252), Expect = 4e-27
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 58  LFMACSG---DVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 114
           L +ACS    D+  V+ LL+ G+DVN  D +G T L  A    HV+ VK+LL   A+   
Sbjct: 73  LSLACSKGYTDI--VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130

Query: 115 RDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
               G  +   A   G   V  ++++   K+
Sbjct: 131 ETDSGYNSMDLAVALGYRSVQQVIESHLLKL 161

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  100 bits (252), Expect = 4e-27
 Identities = 21/89 (23%), Positives = 39/89 (43%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           +  +A  G++  +   + +   +N  D +G T L  AA  G + VV+ LL   A+     
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG 66

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
           +   +A + A   G  ++  +L   G  V
Sbjct: 67  KGRESALSLACSKGYTDIVKMLLDCGVDV 95

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 95.9 bits (240), Expect = 2e-25
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           VE LL  G D   +     +AL +A  +G+ ++VK+LL    +++  D  G T    A +
Sbjct: 52  VEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH 111

Query: 129 YGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
             +V+   +L   GA    +T      M +A
Sbjct: 112 GNHVKCVKMLLESGADPTIETDSGYNSMDLA 142

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.0 bits (196), Expect = 7e-19
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  A     VK V+ LL  G D       G  ++ +A   G+  V +++ S    +    
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

Query: 117 R 117
           +
Sbjct: 166 K 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.0 bits (196), Expect = 8e-19
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 3/75 (4%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 144
               ++H  A +G +  +   + ++  I+  D  G T    A  +G + V   L   GA 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61

Query: 145 V-PKTK--RTPMTVA 156
                K   + +++A
Sbjct: 62  PQLLGKGRESALSLA 76

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 99.9 bits (250), Expect = 5e-27
 Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRT-ALHIAACEGHVEVVKLLLSKKANIDARD 116
           + +   G  +  E LL  G + N  D    T  +H AA EG ++ + +L    A +D RD
Sbjct: 49  IQVMMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA---NPREVPE 163
            WG      A+  G+ +V   L+A              +     P ++P+
Sbjct: 109 AWGRLPVDLAEELGHRDVARYLRAAAGGT--RGSNHARIDAAEGPSDIPD 156

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 91.8 bits (229), Expect = 7e-24
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  A + G V+ V  LL  G + N+ +  GR  + +    G   V +LLL   A  +  D
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD 74

Query: 117 RWGSTAAA-DAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
               T    DA   G ++   +L   GA++  +    R P+ +A
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLA 118

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 80.6 bits (200), Expect = 1e-19
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 9/76 (11%)

Query: 73  LNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYY 129
           +      +         L  AA  G VE V+ LL   AN +A + +G             
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM----M 54

Query: 130 GNVEVYNILKARGAKV 145
           G+  V  +L   GA+ 
Sbjct: 55  GSARVAELLLLHGAEP 70

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  103 bits (259), Expect = 7e-27
 Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 17/134 (12%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
            L    SGD + V  LL  G D+N  ++DG TALH A  + +V++VK L+   ANI+  D
Sbjct: 44  FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPD 103

Query: 117 RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA---NPREVPEYELN 167
             G      AA     G +++   L ++GA V        TP+ +A      E+ + E+N
Sbjct: 104 NEGWIPLHAAA---SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160

Query: 168 PLELQVRKADGITK 181
                 +  D    
Sbjct: 161 -----RQGVDIEAA 169

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.1 bits (235), Expect = 2e-23
 Identities = 28/94 (29%), Positives = 45/94 (47%), Gaps = 9/94 (9%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AAD 125
            + L +  I+       G TALH+AA +G+ EV+KLL+  + +++ +D  G T    AA 
Sbjct: 182 RQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA- 240

Query: 126 AKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
             ++G  E   IL      +    K  +T   VA
Sbjct: 241 --HWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 91.4 bits (228), Expect = 2e-22
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 1/94 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  AC   +V  V+ L+  G ++N  D +G   LH AA  G++++ + L+S+ A++ A +
Sbjct: 77  LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN 136

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKR 150
             G T    A+     E+      R     +  R
Sbjct: 137 SEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAAR 170

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 91.0 bits (227), Expect = 3e-22
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 2/98 (2%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A + G  + ++ L+    DVN  D DG T LH AA  G  E  ++L+    +++A +
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 154
           + G TA   A       +  + K +       KR   +
Sbjct: 263 KVGQTAFDVADEDILGYLEELQKKQNLLH-SEKREKKS 299

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.9 bits (193), Expect = 2e-17
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AAD 125
           +E  + +         DG      A   G  E V  LL + A+I+  +  G TA   A  
Sbjct: 24  LEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQAC- 81

Query: 126 AKYYGNVEVYNILKARGAKV 145
                NV++   L   GA +
Sbjct: 82  --IDDNVDMVKFLVENGANI 99

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.1 bits (170), Expect = 3e-14
 Identities = 16/80 (20%), Positives = 25/80 (31%), Gaps = 12/80 (15%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AAD 125
           +++ +N         +D   A          +  + L S   N     + G TA   AA 
Sbjct: 155 LQNEVNRQ------GVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA- 207

Query: 126 AKYYGNVEVYNILKARGAKV 145
               G  EV  +L      V
Sbjct: 208 --AKGYTEVLKLLIQARYDV 225

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 63.3 bits (155), Expect = 3e-12
 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 5/69 (7%)

Query: 79  VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA--AADAKYYGNVEVYN 136
           +   D   +    +    G    ++  + K+     +   G+    A      G+ E   
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAAC---SSGDTEEVL 57

Query: 137 ILKARGAKV 145
            L  RGA +
Sbjct: 58  RLLERGADI 66

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  101 bits (254), Expect = 1e-26
 Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 5/125 (4%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           LLF+A  G  K V  L   G D++  D+  G TALH+AA     EVV+ L+   A+I+  
Sbjct: 81  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 140

Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQVRK 175
           D  G TA   A+              G ++   K   +      E  E      E+  ++
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAE----VDEIVEKR 196

Query: 176 ADGIT 180
             G  
Sbjct: 197 GKGKD 201

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 95.0 bits (237), Expect = 3e-24
 Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 6/100 (6%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
            + A    D + +  LL E  DV+++D +GRTAL   A  G  + V+LL    A++D RD
Sbjct: 49  WWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 107

Query: 117 -RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTP 152
            R G TA   A  Y   EV   L   GA +  + +   T 
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA 147

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 88.4 bits (220), Expect = 9e-22
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 8/109 (7%)

Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           +  M+ L     G             DV S   +  T    AA +   + +  LL +  +
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-EDRD 69

Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PKTKRTPMTVA 156
           +DA D  G TA       G+ +   +L   GA +     +   T + +A
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 5/43 (11%), Positives = 14/43 (32%)

Query: 74  NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
            E  ++      G+   ++   +   +   +     A   A+D
Sbjct: 187 AEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD 229

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 6/93 (6%), Positives = 21/93 (22%), Gaps = 12/93 (12%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
                     + +  G  +    +     +       + EV +++  +          G 
Sbjct: 152 REILKTTPKGNPMQFGRRIGLEKV---INVLEGQVFEYAEVDEIVEKRG--------KGK 200

Query: 121 TAAADAKYYGNVEVYNILKARGAKV-PKTKRTP 152
                 ++    +   +     A+   K     
Sbjct: 201 DVEYLVRWKDGGDCEWVKGVHVAEDVAKDYEDG 233

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.4 bits (249), Expect = 1e-26
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 8/101 (7%)

Query: 58  LFMACSG---DVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 114
           L +A +G   D+  V  LL   +D+N  D +G T L  A    HV+ V+ LL++ A++  
Sbjct: 73  LSLASTGGYTDI--VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130

Query: 115 RDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTP 152
               G T    A   G  +V  +++    K+         P
Sbjct: 131 EADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 99.0 bits (248), Expect = 2e-26
 Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  A + G+++ V  LL  G D + +  +  +AL +A+  G+ ++V LLL +  +I+  D
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
             G T    A    +V+    L ARGA +  +     TPM +A
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLA 142

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 94.8 bits (237), Expect = 9e-25
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 57  LLFMACSGDVKGVEDLLNEGID-VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           +  +A  G++  +++ L +G + VN  D  G T L  A+  G +E V+ LL   A+    
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65

Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
            +   +A + A   G  ++  +L  R   +
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDI 95

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 72.1 bits (178), Expect = 3e-16
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 10/78 (12%)

Query: 86  GRTALHIAACEGHVEVVKLLLSKKAN-IDARDRWGSTA---AADAKYYGNVEVYNILKAR 141
              ++H  A +G ++ +K  L K  N ++  D  G T    A+    +G +E    L   
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWAS---AFGEIETVRFLLEW 58

Query: 142 GAKV-PKTK--RTPMTVA 156
           GA      K   + +++A
Sbjct: 59  GADPHILAKERESALSLA 76

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 97.5 bits (244), Expect = 3e-26
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRT-ALHIAACEGHVEVVKLLLSKKANIDARD 116
           + +   G  +  E LL  G + N  D    T  +H AA EG ++ + +L    A +D  D
Sbjct: 49  IQVMMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCD 108

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
            WG      A+  G+ ++   L A   
Sbjct: 109 AWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 91.7 bits (229), Expect = 4e-24
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 6/104 (5%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  A + G V+ V  LL  G D N+++  GR  + +    G  +V +LLL   A  +  D
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCAD 74

Query: 117 RWGSTAA-ADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
               T    DA   G ++   +L   GA++       R P+ +A
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLA 118

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 88.3 bits (220), Expect = 1e-22
 Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 76  GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNV 132
              ++ +       L  AA  G VE V+ LL   A+ +A +R+G             G+ 
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM----MGSA 57

Query: 133 EVYNILKARGAKV 145
           +V  +L   GA+ 
Sbjct: 58  QVAELLLLHGAEP 70

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 69.4 bits (171), Expect = 1e-15
 Identities = 12/62 (19%), Positives = 25/62 (40%)

Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 109
               T  +   A  G +  +  L   G  ++  D  GR  + +A  +GH ++ + L +  
Sbjct: 75  PATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134

Query: 110 AN 111
            +
Sbjct: 135 GD 136

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 97.1 bits (243), Expect = 7e-26
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)

Query: 57  LLFMACSGDVKGVEDLLN-EGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           L   A  GDV+ V  LL+ E +  ++++  G+TAL +    G   +   LL + A+ + +
Sbjct: 6   LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQ 64

Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           D  G++   DA   G ++   +L   GA V         P+ +A
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 96.3 bits (241), Expect = 1e-25
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 117
           L +   G      +LL +G   N  D  G + +H AA  G ++ +K+L+   A+++  D 
Sbjct: 40  LQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99

Query: 118 WGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
            G+     A   G+  V + L A  + +  +     TP+ +A
Sbjct: 100 TGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELA 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 89.4 bits (223), Expect = 6e-23
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           ++ L+  G DVN  D  G   +H+A  EGH  VV  L ++ +++  RD  G T    A  
Sbjct: 84  LKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQ 142

Query: 129 YGNVEVYNIL 138
            G  ++ +IL
Sbjct: 143 RGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 67.1 bits (165), Expect = 2e-14
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 86  GRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTA---AADAKYYGNVEVYNILKAR 141
               L  AA  G V+ V+ LL ++  + DA +R+G TA         +G+  +   L  +
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM----FGSTAIALELLKQ 57

Query: 142 GAKV 145
           GA  
Sbjct: 58  GASP 61

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 61.3 bits (150), Expect = 2e-12
 Identities = 12/50 (24%), Positives = 20/50 (40%)

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
           + +A       V   L    D++  D  G T L +A   G  ++V +L  
Sbjct: 105 IHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 96.3 bits (241), Expect = 7e-26
 Identities = 36/114 (31%), Positives = 59/114 (51%), Gaps = 6/114 (5%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           LL  A +G    V  L+  G DVN+ D  G T L++A   GH+E+V++LL   A+++A D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA---NPREVPEY 164
             G T    A + G++E+  +L   GA V  + K  +T   ++      ++ E 
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 90.9 bits (227), Expect = 9e-24
 Identities = 30/70 (42%), Positives = 46/70 (65%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           VE LL  G DVN++D  G T LH+AA  GH+E+ ++LL   A+++A+D++G TA   +  
Sbjct: 63  VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122

Query: 129 YGNVEVYNIL 138
            GN ++  IL
Sbjct: 123 NGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 79.0 bits (196), Expect = 4e-19
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 66  VKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 125
           ++G     + G D+          L  AA  G  + V++L++  A+++A+D +G T    
Sbjct: 1   MRGSHHHHHHGSDLG-------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYL 53

Query: 126 AKYYGNVEVYNILKARGAKV 145
           A  +G++E+  +L   GA V
Sbjct: 54  ATAHGHLEIVEVLLKNGADV 73

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 62.0 bits (152), Expect = 9e-13
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
            E LL  G DVN+ D  G+TA  I+   G+ ++ ++L  
Sbjct: 96  AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  101 bits (254), Expect = 8e-26
 Identities = 39/120 (32%), Positives = 54/120 (45%), Gaps = 13/120 (10%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A     V+ V+ LL  G DV++ D  G   LH A   GH EV +LLL   A ++A D
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMD 121

Query: 117 RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA---NPREVPEYELN 167
            W  T    AA       VEV ++L + GA         ++ + +A     RE   YE  
Sbjct: 122 LWQFTPLHEAA---SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK 178

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 97.6 bits (244), Expect = 2e-24
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 57  LLFMACSGDVKG-VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           LL  A SG+ +  +  L    ++ ++ D    T LH+AA    V +V+LLL   A++ A+
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87

Query: 116 DRWGSTA---AADAKYYGNVEVYNILKARGAKV 145
           D+ G      A     YG+ EV  +L   GA V
Sbjct: 88  DKGGLVPLHNAC---SYGHYEVTELLLKHGACV 117

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.5 bits (236), Expect = 3e-23
 Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  ACS G  +  E LL  G  VN++DL   T LH AA +  VEV  LLLS  A+    +
Sbjct: 95  LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
             G +A   A      E         +
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHS 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.1 bits (235), Expect = 4e-23
 Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 11/104 (10%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AAD 125
            E LL +G +VN  + D  T LH+AA   H +V+++L    A ++A D  G TA   AA 
Sbjct: 230 AELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA- 288

Query: 126 AKYYGNVEVYNILKARGAKV-PKTK--RTPMTVANPREVPEYEL 166
               G+++   +L + G+     +    T   + N  E  +  L
Sbjct: 289 --LAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN--EAVQQIL 328

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 92.6 bits (231), Expect = 2e-22
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 12/105 (11%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH---VEVVKLLLSKKANID 113
           LL  A   D+  V+  L   I          TALH A    H    +V +LLL K AN++
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 114 ARDRWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTP 152
            +++   T    AA      + +V  +L   GAK+       +T 
Sbjct: 242 EKNKDFMTPLHVAA---ERAHNDVMEVLHKHGAKMNALDSLGQTA 283

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.8 bits (216), Expect = 2e-20
 Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 7/101 (6%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A        +E L   G  +N++D  G+TALH AA  GH++  +LLLS  ++     
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTKRTPMTVA 156
             G TAA      GN  V  IL +    +        +  A
Sbjct: 311 LQGFTAA----QMGNEAVQQIL-SESTPMRTSDVDYRLLEA 346

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 83.7 bits (208), Expect = 3e-19
 Identities = 24/93 (25%), Positives = 32/93 (34%), Gaps = 10/93 (10%)

Query: 67  KGVEDLLNEGIDVNSIDLDGRTALHIAACEGHV-EVVKLLLSKKANIDARDRWGSTA--- 122
           K   DL +            +  L  AA  G+  +++ LL     N  A D   ST    
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64

Query: 123 AADAKYYGNVEVYNILKARGAKV---PKTKRTP 152
           AA    Y  V +  +L   GA V    K    P
Sbjct: 65  AA---GYNRVRIVQLLLQHGADVHAKDKGGLVP 94

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.1 bits (191), Expect = 5e-17
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 27/123 (21%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKL---------------- 104
           A    V+    LL+ G D   ++  G++A+ +A      E +                  
Sbjct: 132 ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL 191

Query: 105 -----LLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPM 153
                 L+ +     + +   TA   A  + +    +V  +L  +GA V  K K   TP+
Sbjct: 192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251

Query: 154 TVA 156
            VA
Sbjct: 252 HVA 254

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.7 bits (169), Expect = 5e-14
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
           A +G ++    LL+ G D + I L G TA  +       E V+ +LS+   +   D    
Sbjct: 288 ALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDYR 342

Query: 121 T-AAADAKYYGN 131
              A+     G+
Sbjct: 343 LLEAS---KAGD 351

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 95.5 bits (239), Expect = 8e-26
 Identities = 40/89 (44%), Positives = 58/89 (65%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   A +G  + V+ LL++G DVN+   DG T LH+AA  GH E+VKLLL+K A+++AR 
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
           + G+T    AK  G+ E+  +L A+GA V
Sbjct: 73  KDGNTPEHLAKKNGHHEIVKLLDAKGADV 101

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 86.7 bits (216), Expect = 2e-22
 Identities = 24/54 (44%), Positives = 33/54 (61%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 122
           V+ LL +G DVN+   DG T  H+A   GH E+VKLL +K A+++AR    S  
Sbjct: 58  VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 84.0 bits (209), Expect = 3e-21
 Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 76  GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 135
           G        DG T LH AA  GH E VK LLSK A+++AR + G+T    A   G+ E+ 
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIV 58

Query: 136 NILKARGAKV-PKTK--RTPMTVA 156
            +L A+GA V  ++K   TP  +A
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLA 82

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 97.5 bits (244), Expect = 8e-26
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 58  LFMAC-SGDVKGVEDLLNEG-IDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           +F  C  G+   V   L+    D+N  D  G + LH A  EG   VV++L+ + A I+  
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68

Query: 116 DRWGSTA---AADAKYYGNVEVYNILKARGAKV 145
           +R   T    AA    +G+ ++   L    A +
Sbjct: 69  NRGDDTPLHLAA---SHGHRDIVQKLLQYKADI 98

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 96.0 bits (240), Expect = 3e-25
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  AC  G    VE L+  G  +N ++    T LH+AA  GH ++V+ LL  KA+I+A +
Sbjct: 43  LHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVN 102

Query: 117 RWGSTA---AADAKYYGNVEVYNILKARGAKV 145
             G+     A    ++G  +V   L A GA V
Sbjct: 103 EHGNVPLHYAC---FWGQDQVAEDLVANGALV 131

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 93.3 bits (233), Expect = 4e-24
 Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 1/92 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A S G    V+ LL    D+N+++  G   LH A   G  +V + L++  A +   +
Sbjct: 76  LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKT 148
           ++G      AK      +    +  G  + + 
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEKMGQNLNRI 167

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 73.6 bits (182), Expect = 1e-16
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKAN-IDARDRWGSTAAADAKYYGNVEVYNILKARGA 143
           +    +     EG+   V+L L    N ++  D  G +    A   G   V  +L  RGA
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 144 KV 145
           ++
Sbjct: 64  RI 65

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 73.2 bits (181), Expect = 1e-16
 Identities = 8/48 (16%), Positives = 16/48 (33%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
            EDL+  G  V+  +  G   +  A       + +       N++   
Sbjct: 121 AEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 98.1 bits (245), Expect = 1e-25
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDAR 115
           L  A   G++  + + L+  + VN +D  G TAL+ A   GH ++V++L ++    ++ +
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQ 136

Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           ++ G TA   A + G  ++  +L A+GA+ 
Sbjct: 137 NKLGDTALHAAAWKGYADIVQLLLAKGART 166

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 95.8 bits (239), Expect = 1e-24
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)

Query: 58  LFMACSG---DVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID 113
           L+ AC G   D+  VE L  +  I++N  +  G TALH AA +G+ ++V+LLL+K A  D
Sbjct: 110 LYWACHGGHKDI--VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167

Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
            R+     A   A       +    +   A  
Sbjct: 168 LRNIEKKLAFDMATNAACASLLKKKQGTDAVR 199

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 83.1 bits (206), Expect = 8e-20
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 11/92 (11%)

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 117
            +   S   KG   L+     V          LH AA  G++  ++  L  +  ++  D+
Sbjct: 49  WWKGTS---KGRTGLI-PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK 104

Query: 118 WGSTA---AADAKYYGNVEVYNIL-KARGAKV 145
            GSTA   A    + G+ ++  +L      ++
Sbjct: 105 AGSTALYWAC---HGGHKDIVEMLFTQPNIEL 133

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 80.4 bits (199), Expect = 6e-19
 Identities = 9/62 (14%), Positives = 21/62 (33%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           V+ LL +G   +  +++ + A  +A       ++K      A     +        D+  
Sbjct: 156 VQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215

Query: 129 YG 130
             
Sbjct: 216 EH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.8 bits (182), Expect = 2e-16
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 6/89 (6%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           +F A  + + +  ++L  E  D+  I     T       +G   ++         +  + 
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI-----PSNYVAEQA 70

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
                   +A   GN+            V
Sbjct: 71  ESIDNPLHEAAKRGNLSWLRECLDNRVGV 99

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 64.6 bits (158), Expect = 5e-13
 Identities = 10/72 (13%), Positives = 20/72 (27%), Gaps = 2/72 (2%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 144
            G+  +  A           L  ++ +I        T        G   +  I     A+
Sbjct: 11  PGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL--IPSNYVAE 68

Query: 145 VPKTKRTPMTVA 156
             ++   P+  A
Sbjct: 69  QAESIDNPLHEA 80

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 4/43 (9%), Positives = 10/43 (23%), Gaps = 1/43 (2%)

Query: 58  LFMACSGDVKG-VEDLLNEGIDVNSIDLDGRTALHIAACEGHV 99
             MA +      ++            + +       +  E H 
Sbjct: 177 FDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 96.7 bits (242), Expect = 1e-25
 Identities = 35/89 (39%), Positives = 51/89 (57%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           LL  A +G    V  L+  G DVN+ D  G T LH+AA  GH+E+V++LL   A+++A D
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
             G T    A  +G++E+  +L   GA V
Sbjct: 78  HAGMTPLRLAALFGHLEIVEVLLKNGADV 106

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 94.4 bits (236), Expect = 1e-24
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           VE LL  G DVN++D  G T L +AA  GH+E+V++LL   A+++A D  G T    A  
Sbjct: 63  VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122

Query: 129 YGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           +G++E+  +L   GA V  + K  +T   ++
Sbjct: 123 FGHLEIVEVLLKNGADVNAQDKFGKTAFDIS 153

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 91.7 bits (229), Expect = 1e-23
 Identities = 31/70 (44%), Positives = 48/70 (68%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           VE LL  G DVN+ D++G T LH+AA  GH+E+V++LL   A+++A+D++G TA   +  
Sbjct: 96  VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155

Query: 129 YGNVEVYNIL 138
            GN ++  IL
Sbjct: 156 NGNEDLAEIL 165

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 78.9 bits (196), Expect = 7e-19
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 67  KGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA 126
           +G     + G D+          L  AA  G  + V++L++  A+++A D  G T    A
Sbjct: 2   RGSHHHHHHGSDLG-------KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLA 54

Query: 127 KYYGNVEVYNILKARGAKV 145
            + G++E+  +L   GA V
Sbjct: 55  AFNGHLEIVEVLLKNGADV 73

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 64.7 bits (159), Expect = 2e-13
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
           VE LL  G DVN+ D  G+TA  I+   G+ ++ ++L   
Sbjct: 129 VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  101 bits (254), Expect = 2e-25
 Identities = 39/103 (37%), Positives = 46/103 (44%), Gaps = 4/103 (3%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  A   G    V+ LL    + N     G T LHIAA EGHVE V  LL K+A+     
Sbjct: 84  LHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           + G T    A  YG V V  +L  R A      K   TP+ VA
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.9 bits (250), Expect = 7e-25
 Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A   G +  V++LL  G   N  ++   T LH+AA  GH EV K LL  KA ++A+ 
Sbjct: 18  LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77

Query: 117 RWGSTA---AADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
           +   T    AA     G+  +  +L    A          TP+ +A
Sbjct: 78  KDDQTPLHCAA---RIGHTNMVKLLLENNANPNLATTAGHTPLHIA 120

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 99.1 bits (248), Expect = 1e-24
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 3/99 (3%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
               ++  V+ LL  G   +S   +G T LHIAA +  VEV + LL    + +A    G 
Sbjct: 187 VHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 246

Query: 121 TAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           T    A   G+ E+  +L ++ A      K   TP+ + 
Sbjct: 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV 285

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.3 bits (246), Expect = 2e-24
 Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 7/107 (6%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A   G++K V+ LL    DVN+    G + LH AA +GH ++V LLL   A+ +   
Sbjct: 315 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVP------KTKRTPMTVAN 157
             G+T  A AK  G + V ++LK    +        K + +     +
Sbjct: 375 SDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.3 bits (246), Expect = 2e-24
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 4/103 (3%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A   G V+ V  LL +      +   G T LH+AA  G V V +LLL + A+ +A  
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
           + G T    A ++ N+++  +L  RG           TP+ +A
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.6 bits (244), Expect = 4e-24
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L MA  +G  +  + LL     VN+   D +T LH AA  GH  +VKLLL   AN +   
Sbjct: 51  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 110

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
             G T    A   G+VE    L  + A     TK   TP+ VA
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.6 bits (244), Expect = 5e-24
 Identities = 27/103 (26%), Positives = 53/103 (51%), Gaps = 4/103 (3%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +    G V   + L+  G+ V++    G T LH+A+  G++++VK LL  +A+++A+ 
Sbjct: 282 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           + G +    A   G+ ++  +L   GA     +    TP+ +A
Sbjct: 342 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 96.4 bits (241), Expect = 1e-23
 Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A   G  + V  LL++  + N  +  G T LH+ A EGHV V  +L+     +DA  
Sbjct: 249 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATT 308

Query: 117 RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           R G T    A+   +YGN+++   L    A V  KTK   +P+  A
Sbjct: 309 RMGYTPLHVAS---HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA 351

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 96.4 bits (241), Expect = 1e-23
 Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 10/106 (9%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A   G V+  E LL      N+   +G T LH+A    ++++VKLLL +  +  +  
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 209

Query: 117 RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
             G T    AA       VEV   L   G     ++    TP+ +A
Sbjct: 210 WNGYTPLHIAA---KQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.8 bits (216), Expect = 4e-20
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 76  GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 135
           GI        G T LH+A+  GH+ +VK LL + A+ +  +    T    A   G+ EV 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63

Query: 136 NILKARGAKV---PKTKRTPMTVA 156
             L    AKV    K  +TP+  A
Sbjct: 64  KYLLQNKAKVNAKAKDDQTPLHCA 87

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 75.2 bits (186), Expect = 4e-16
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLL---LSKKANID 113
           L  A   G    V  LL  G   N +  DG T L IA   G++ V  +L     + + + 
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 407

Query: 114 ARDRWGSTAAADAKY 128
             D+   +       
Sbjct: 408 VSDKHRMSFPETVDE 422

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 94.7 bits (237), Expect = 3e-25
 Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 4/103 (3%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A   G ++ V+ LL  G DVN+ D +GRT LH+AA  GH+EVVKLLL   A+++A+D
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           + G T    A   G++EV  +L   GA V  K K  RTP+ +A
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 93.2 bits (233), Expect = 1e-24
 Identities = 36/75 (48%), Positives = 49/75 (65%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           V+ LL  G DVN+ D +GRT LH+AA  GH+EVVKLLL   A+++A+D+ G T    A  
Sbjct: 51  VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110

Query: 129 YGNVEVYNILKARGA 143
            G++EV  +L   GA
Sbjct: 111 NGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 80.5 bits (200), Expect = 9e-20
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 3/71 (4%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 144
           +GRT LH+AA  GH+EVVKLLL   A+++A+D+ G T    A   G++EV  +L   GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 145 V-PKTK--RTP 152
           V  K K  RTP
Sbjct: 61  VNAKDKNGRTP 71

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 97.6 bits (243), Expect = 3e-25
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 7/118 (5%)

Query: 57  LLFMACSGDVKG-VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           +  +A SG +    E +L +       D D RTALH A   GH E+V+ LL     ++ +
Sbjct: 10  ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 69

Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYELN 167
           D  G +    A   G  E+   L  +GA V    +   TP+  A   N  E+    L 
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE 127

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 79.9 bits (197), Expect = 1e-18
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
             +G  + VE LL  G+ VN  D  G + LHIAA  G  E+VK LL K A+++A ++ G 
Sbjct: 48  CSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC 107

Query: 121 TAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEYEL-NPLELQV 173
           T    A      E+  +L   GA          T M  A      ++    L       +
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI 167

Query: 174 RKADGIT 180
           +  +G T
Sbjct: 168 QDTEGNT 174

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 72.6 bits (178), Expect = 6e-16
 Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 3/112 (2%)

Query: 49  ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
            N +    L + A     +    LL  G + ++ D    TA+H AA +G++++V +LL  
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY 161

Query: 109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVAN 157
           KA+ + +D  G+T    A     VE    L  +GA +    K ++TP+ VA 
Sbjct: 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.1 bits (174), Expect = 3e-15
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 13/106 (12%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKAR 141
                 ++A      E+ + +L+ K+     D+   TA   A      G+ E+   L   
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWAC---SAGHTEIVEFLLQL 62

Query: 142 GAKV-PKTK--RTPMTVA---NPREVPEYEL-NPLELQVRKADGIT 180
           G  V  K     +P+ +A      E+ +  L     +     +G T
Sbjct: 63  GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCT 108

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.0 bits (166), Expect = 3e-14
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 49  ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
           ++      +   A  G++K V  LL      N  D +G T LH+A  E  VE  K L+++
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194

Query: 109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
            A+I   ++   T    AK  G + +     A G + 
Sbjct: 195 GASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEA 229

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.4 bits (136), Expect = 5e-10
 Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 49  ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
           ++ +    L        V+  + L+ +G  +   + + +T L +A   G + ++   L++
Sbjct: 168 QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAE 225

Query: 109 KANID 113
                
Sbjct: 226 GEEAS 230

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 97.7 bits (244), Expect = 3e-25
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 13/126 (10%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR---DR 117
            C+G  + V+ L+  G++VN+ D DG T LH AA   +V+V K L+   A + A    D 
Sbjct: 78  VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM 137

Query: 118 WGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVANPREVPEYELNPLELQVR 174
             +    +    G  +    L     K+    K     +    P+       N  EL ++
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ-------NDDELPMK 190

Query: 175 KADGIT 180
           + D +T
Sbjct: 191 EGDCMT 196

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 96.9 bits (242), Expect = 6e-25
 Identities = 32/89 (35%), Positives = 45/89 (50%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           LL  +  G+   V+ ++ E  D +  + +G TALH A C GH E+VK L+    N++A D
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD 100

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
             G T    A    NV+V   L   GA V
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVESGAAV 129

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 86.1 bits (214), Expect = 7e-21
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 5/103 (4%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L     +   K   + +  G+ V   +      L  ++ EG  ++V+ ++ +  +    +
Sbjct: 9   LPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN 67

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
             G TA  +A   G+ E+   L   G  V        TP+  A
Sbjct: 68  DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 69.6 bits (171), Expect = 8e-15
 Identities = 4/63 (6%), Positives = 16/63 (25%), Gaps = 1/63 (1%)

Query: 83  DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG 142
           ++ G+ +L         +     ++    +            D+   G  ++   +    
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-PLALLLDSSLEGEFDLVQRIIYEV 60

Query: 143 AKV 145
              
Sbjct: 61  DDP 63

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 93.6 bits (234), Expect = 3e-25
 Identities = 39/87 (44%), Positives = 55/87 (63%), Gaps = 1/87 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A   G ++ V+ LL  G DVN+ D +GRT LH+AA  GH+EVVKLLL   A+++A+D
Sbjct: 6   LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD 65

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
           + G T    A   G++EV  +L   GA
Sbjct: 66  KNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 81.2 bits (202), Expect = 2e-20
 Identities = 29/61 (47%), Positives = 40/61 (65%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 144
           +GRT LH+AA  GH+EVVKLLL   A+++A+D+ G T    A   G++EV  +L   GA 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 145 V 145
           V
Sbjct: 61  V 61

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 97.3 bits (243), Expect = 3e-25
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           LL  A +G+++ V+  + E  D +  + +G TALH A C  +  +V  L++  AN+++ D
Sbjct: 25  LLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPD 84

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV----PKTKRTPMTVANP 158
             G T    A    +  +   L   GA +         T     +P
Sbjct: 85  SHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDP 130

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 83.1 bits (206), Expect = 7e-20
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 69  VEDLLNEGIDVNSID---LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD 125
           +  +L +           L+    L  AA  G +EVV+  + +  +    +  G TA  +
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 126 AKYYGNVEVYNILKARGAKV---PKTKRTPMTVA---NPREVPEY 164
           A    N  + + L   GA V        TP+  A   N   +   
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMA 105

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 71.1 bits (175), Expect = 2e-15
 Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 7/102 (6%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDL-DGRTALHIAAC--EGHVEVVKLLLSKKANIDARDR 117
           A   D      L+  G  + +  L DG TA        EG+ +    L   + ++   + 
Sbjct: 95  ASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS 154

Query: 118 WGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 156
               A  D       E+ +  +     V      + T    A
Sbjct: 155 GAVYALWDYSAEFGDEL-SFREGESVTVLRRDGPEETDWWWA 195

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 1/61 (1%)

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV-KLLLSKKANIDARD 116
           L+   +     +     E + V   D    T    AA  G    V +        +  + 
Sbjct: 160 LWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQR 219

Query: 117 R 117
            
Sbjct: 220 S 220

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 96.7 bits (242), Expect = 6e-25
 Identities = 30/94 (31%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AAD 125
           +EDL+N   DVN++D  G++ALH AA   +V+   +LL   AN D ++    T    AA 
Sbjct: 108 LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA- 166

Query: 126 AKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
               G+ E   +L    A         R P  +A
Sbjct: 167 --REGSYETAKVLLDHFANRDITDHMDRLPRDIA 198

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 92.9 bits (232), Expect = 1e-23
 Identities = 21/85 (24%), Positives = 32/85 (37%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
           A   +V     LL  G + +  +    T L +AA EG  E  K+LL   AN D  D    
Sbjct: 133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 192

Query: 121 TAAADAKYYGNVEVYNILKARGAKV 145
                A+   + ++  +L       
Sbjct: 193 LPRDIAQERMHHDIVRLLDEYNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 88.6 bits (221), Expect = 6e-22
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 69  VEDLLNEGIDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK 127
           + D + +G  + N  D  G TALH+AA     +  K LL   A+ + +D  G T    A 
Sbjct: 7   ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 66

Query: 128 YYGNVEVYNILKARGAKVPKTK----RTPMTVA 156
                 V+ IL    A     +     TP+ +A
Sbjct: 67  SADAQGVFQILIRNRATDLDARMHDGTTPLILA 99

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.9 bits (214), Expect = 6e-21
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 11/103 (10%)

Query: 58  LFMACSGDVKGVEDLL--NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           L  A S D +GV  +L  N   D+++   DG T L +AA      +++ L++  A+++A 
Sbjct: 62  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 121

Query: 116 DRWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTP 152
           D  G +A   AA      NV+   +L   GA    +     TP
Sbjct: 122 DDLGKSALHWAA---AVNNVDAAVVLLKNGANKDMQNNREETP 161

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 46.6 bits (112), Expect = 1e-06
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 7/53 (13%)

Query: 97  GHVEVVKLLLSKKANI-DARDRWGSTA---AADAKYYGNVEVYNILKARGAKV 145
               V+   + + A++ +  DR G TA   AA    Y   +    L    A  
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAA---RYSRSDAAKRLLEASADA 51

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 96.7 bits (242), Expect = 6e-25
 Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  A   G V     L+  G ++++   D RT L  AA   H+E VK L+   A +D +D
Sbjct: 15  LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD 74

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVA 156
             GST    A   G+ EV   L + G      +     TPM  A
Sbjct: 75  AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 95.2 bits (238), Expect = 2e-24
 Identities = 19/75 (25%), Positives = 35/75 (46%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
            E LL    D++++++ G + LHIAA E   + V L LS+ +++  +++ G T    A  
Sbjct: 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219

Query: 129 YGNVEVYNILKARGA 143
              V     +     
Sbjct: 220 NSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 93.2 bits (233), Expect = 1e-23
 Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 10/106 (9%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           +  A     V  V+ LL++G D+N  D +    LH AA  G V++ ++LL+ K ++ A +
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174

Query: 117 RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
             G +    AA        +   +  +R + V  K K   TP+  A
Sbjct: 175 IHGDSPLHIAA---RENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 88.6 bits (221), Expect = 8e-22
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)

Query: 69  VEDLLNEG-IDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK 127
           V+ LL+ G +DVN  D  G T +  A    HV++VKLLLSK ++I+ RD   +     A 
Sbjct: 93  VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA 152

Query: 128 YYGNVEVYNILKARGAKV 145
           + G V++  IL A    +
Sbjct: 153 FSGCVDIAEILLAAKCDL 170

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 88.2 bits (220), Expect = 1e-21
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 77  IDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYN 136
           ++      + R+ LH AA  GHV++  +L+   ANID       T   +A    ++E   
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVK 61

Query: 137 ILKARGAKV-PKTK--RTP 152
            L   GA V PK     T 
Sbjct: 62  YLIKAGALVDPKDAEGSTC 80

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.1 bits (160), Expect = 3e-13
 Identities = 9/43 (20%), Positives = 15/43 (34%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           V   L+   DV   + +G T L  A+    V     +     +
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 94.4 bits (236), Expect = 8e-25
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 117
           L +   G+ +    LL  G + +  D  G   +H AA  G ++ ++ LL  +A+++  D 
Sbjct: 42  LQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101

Query: 118 WGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVA---NPREVPEY 164
            G+     A   G++ V   L    A     +     T   +A      EV   
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 92.8 bits (232), Expect = 3e-24
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   A  GD++ +  LL   ++VN+ +  GRTAL +    G+ E+ + LL + AN D +D
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKD 67

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
           R G     DA   G ++    L    A V
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLLEFQADV 96

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 90.5 bits (226), Expect = 2e-23
 Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-NIDARDRWGSTAAADAK 127
           ++ LL    DVN  D +G   LH+AA EGH+ VV+ L+   A N+  R+  G TA   A+
Sbjct: 86  LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145

Query: 128 YYGNVEVYNILKARGA 143
            YG  EV ++++A GA
Sbjct: 146 LYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.5 bits (187), Expect = 1e-17
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKAR 141
                L  AA  G +E +  LL    N++A++ +G TA          GN E+   L  R
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK----LGNPEIARRLLLR 59

Query: 142 GAKV 145
           GA  
Sbjct: 60  GANP 63

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 95.3 bits (238), Expect = 8e-25
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDL-DGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           LLF+A  G  K V  L   G D++  D+  G TALH+AA     EVV+ L+   A+I+  
Sbjct: 80  LLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE 139

Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           D  G TA   A+              G ++
Sbjct: 140 DERGLTALELAREILKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 94.9 bits (237), Expect = 1e-24
 Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 12/107 (11%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
            + A    D + +  LL E  DV+++D +GRTAL   A  G  + V+LL    A++D RD
Sbjct: 48  WWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 106

Query: 117 -RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
            R G TA   AA    Y   EV   L   GA +  + +   T + +A
Sbjct: 107 MRGGLTALHMAA---GYVRPEVVEALVELGADIEVEDERGLTALELA 150

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 86.4 bits (215), Expect = 2e-21
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 8/111 (7%)

Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 109
             +  M+ L     G             DV S   +  T    AA +   + +  LL + 
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-ED 66

Query: 110 ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV----PKTKRTPMTVA 156
            ++DA D  G TA       G+ +   +L   GA +     +   T + +A
Sbjct: 67  RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.8 bits (172), Expect = 3e-15
 Identities = 13/56 (23%), Positives = 18/56 (32%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           A     + VE L+  G D+   D  G TAL +A            +     I    
Sbjct: 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 94.4 bits (236), Expect = 8e-25
 Identities = 30/85 (35%), Positives = 39/85 (45%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
           A    V  VE LL  G DV++ D  G   LH A   GH EV +LL+   A ++  D W  
Sbjct: 50  AGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKF 109

Query: 121 TAAADAKYYGNVEVYNILKARGAKV 145
           T   +A   G  E+  +L   GA  
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADP 134

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 93.2 bits (233), Expect = 3e-24
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AAD 125
            E L+  G  VN  DL   T LH AA +G  E+ KLLL   A+   ++R G+T       
Sbjct: 91  AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK- 149

Query: 126 AKYYGNVEVYNILKARGA 143
               G+ ++ ++L+   A
Sbjct: 150 ---DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 93.2 bits (233), Expect = 3e-24
 Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
           N ++  QLL  A +GDV+ V+ L     ++   I+    T LH AA    V VV+ LL  
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
            A++ A+D+ G     +A  YG+ EV  +L   GA V
Sbjct: 65  GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 101

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.9 bits (188), Expect = 1e-17
 Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 76  GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYGNVEV 134
           G   NS   +    L  AA  G VE VK L + +  N    +   ST    A  Y  V V
Sbjct: 1   GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57

Query: 135 YNILKARGAKV-PKTK--RTP 152
              L   GA V  K K    P
Sbjct: 58  VEYLLQHGADVHAKDKGGLVP 78

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 95.6 bits (239), Expect = 9e-25
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 57  LLFMACSGDVKG-VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           LL  A   D K   E L +    V+ +D +G T L+IA     +E+ K L+ + A+I+ +
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQ 68

Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK----RTPMTVA 156
           +    +    A   G  E+   +                  +  A
Sbjct: 69  NSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPA 113

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.5 bits (205), Expect = 6e-20
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 57  LLFMACSGDVKGVEDLLNEG-IDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDA 114
            L+    G  + +  +L     D+N  +  G  AL  AA +GH++ VKLLL   + +ID 
Sbjct: 76  YLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135

Query: 115 RDRWGSTA---AA--DAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           ++ +G TA   A           ++  +L   GA    K    RT M  A
Sbjct: 136 QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.1 bits (204), Expect = 9e-20
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 58  LFMACS-GDVKGVEDLLNEGI-DVNSIDLDGRTALHIAAC-----EGHVEVVKLLLSKKA 110
           L  A   G +  V+ LL +G  D++  +  G TAL  A       + + ++VKLL+   A
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGA 169

Query: 111 NIDARDRWGSTAAADAKYYGNVEVYNIL 138
           +   +D  G TA   A   G  E+  IL
Sbjct: 170 DQSIKDNSGRTAMDYANQKGYTEISKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 76.3 bits (189), Expect = 2e-17
 Identities = 14/63 (22%), Positives = 25/63 (39%)

Query: 83  DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG 142
             +    L  A      +V ++L      +D  D  G+T    A +  ++E+   L  RG
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 143 AKV 145
           A +
Sbjct: 63  ADI 65

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 63.6 bits (156), Expect = 7e-13
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
           V+ L+  G D +  D  GRTA+  A  +G+ E+ K+L  
Sbjct: 161 VKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 94.0 bits (235), Expect = 1e-24
 Identities = 28/77 (36%), Positives = 42/77 (54%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
            E LL  G+  ++     RT LH+AA EGH  +V++LL   A+++A+D    TA   A  
Sbjct: 50  TEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE 109

Query: 129 YGNVEVYNILKARGAKV 145
           + + EV  +L   GA V
Sbjct: 110 HNHQEVVELLIKYGADV 126

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 93.2 bits (233), Expect = 2e-24
 Identities = 27/71 (38%), Positives = 40/71 (56%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           VE LL  G DVN+ D+   TALH A    H EVV+LL+   A++  + ++  TA   +  
Sbjct: 83  VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISID 142

Query: 129 YGNVEVYNILK 139
            GN ++  IL+
Sbjct: 143 NGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 92.8 bits (232), Expect = 3e-24
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           LL  A +G    V  L+  G    + D  G + LH+AA  GH    ++LL    + DAR 
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART 64

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTP 152
           +   T    A   G+  +  +L   GA V      K T 
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA 103

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.9 bits (175), Expect = 6e-16
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKAR 141
           D    L  AA  G  + V++L++  A     D  G++    AA    YG+     +L   
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAA---QYGHFSTTEVLLRA 56

Query: 142 GAKV-PKTK--RTP 152
           G     +TK  RTP
Sbjct: 57  GVSRDARTKVDRTP 70

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 96.0 bits (240), Expect = 1e-24
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  A     +  V+ LL  G +VN+    G +ALH A+  G + +V+ L+   A+   ++
Sbjct: 154 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 213

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGA 143
               T    A+    +++      R A
Sbjct: 214 CHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 89.8 bits (224), Expect = 3e-22
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           V      G +++  +   +T LH+A       VV+LL++  A+  A DR G TAA  A  
Sbjct: 29  VNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACE 88

Query: 129 YGNVEVYNILKARGAKVP-----KTK--RTP 152
           + +      L    A        +     T 
Sbjct: 89  HRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 85.2 bits (212), Expect = 2e-20
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 15/111 (13%)

Query: 58  LFMACS-GDVKGVEDLLNEG----IDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
             +AC       +  LL+      +D+ + + DG TALH+A      E V+LLL + A+I
Sbjct: 83  AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142

Query: 113 DARDR-WGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           DA D   G +    A       ++ +  +L   GA V  +     + +  A
Sbjct: 143 DAVDIKSGRSPLIHAV---ENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 73.3 bits (181), Expect = 4e-16
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 79  VNSIDLDGRTALHIAACEGHVEVVKLLLS----KKANIDARDRWGSTAAADAKYYGNVEV 134
               D DG T LHIA  +G++  V  L++        +D  +    T    A       V
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61

Query: 135 YNILKARGAKV 145
             +L   GA  
Sbjct: 62  VRLLVTAGASP 72

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 68.2 bits (168), Expect = 3e-14
 Identities = 9/51 (17%), Positives = 23/51 (45%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           +  G +  V  L+  G D +  +    T L +A     +++++   ++ A+
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS 241

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 96.0 bits (240), Expect = 2e-24
 Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 10/106 (9%)

Query: 58  LFMACSGDVKG-VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A    V+G +EDL+N   DVN++D  G++ALH AA   +V+   +LL   AN D ++
Sbjct: 128 LILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187

Query: 117 RWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
               T    AA     G+ E   +L    A         R P  +A
Sbjct: 188 NREETPLFLAA---REGSYETAKVLLDHFANRDITDHMDRLPRDIA 230

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 92.5 bits (231), Expect = 3e-23
 Identities = 21/83 (25%), Positives = 32/83 (38%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
           A   +V     LL  G + +  +    T L +AA EG  E  K+LL   AN D  D    
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR 224

Query: 121 TAAADAKYYGNVEVYNILKARGA 143
                A+   + ++  +L     
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 87.5 bits (218), Expect = 2e-21
 Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 58  LFMACSGDVKGVEDLL--NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           L  A S D +GV  +L  N   D+++   DG T L +AA      +++ L++  A+++A 
Sbjct: 94  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAV 153

Query: 116 DRWGSTA---AADAKYYGNVEVYNILKARGAKV 145
           D  G +A   AA      NV+   +L   GA  
Sbjct: 154 DDLGKSALHWAA---AVNNVDAAVVLLKNGANK 183

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 84.8 bits (211), Expect = 2e-20
 Identities = 25/89 (28%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 69  VEDLLNEGIDV-NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK 127
           + D + +G  + N  D  G TALH+AA     +  K LL   A+ + +D  G T    A 
Sbjct: 39  ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV 98

Query: 128 YYGNVEVYNILKARGAKVPKTK----RTP 152
                 V+ IL    A     +     TP
Sbjct: 99  SADAQGVFQILIRNRATDLDARMHDGTTP 127

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 70.6 bits (174), Expect = 5e-15
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 20/86 (23%)

Query: 77  IDVNSIDLDGRTALHIAACEG-------------HVEVVKLLLSKKANI-DARDRWGSTA 122
           +DVN    DG T L IA+C G                V+   + + A++ +  DR G TA
Sbjct: 1   MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

Query: 123 ---AADAKYYGNVEVYNILKARGAKV 145
              AA    Y   +    L    A  
Sbjct: 61  LHLAA---RYSRSDAAKRLLEASADA 83

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 68.6 bits (169), Expect = 2e-14
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
           LF+A   G  +  + LL+   + +  D   R    IA    H ++V+LL  +  + 
Sbjct: 194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHH 249

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 91.5 bits (228), Expect = 2e-24
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
              L+  G  + S   D    L  AA  G  + V++L++  A++ A+D+ GST    A  
Sbjct: 10  SSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAAR 66

Query: 129 YGNVEVYNILKARGAKVP---KTKRTPMTVA 156
            G++EV  +L   GA V    K  +T   ++
Sbjct: 67  NGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 91.5 bits (228), Expect = 3e-24
 Identities = 35/83 (42%), Positives = 50/83 (60%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           LL  A +G    V  L+  G DV + D +G T LH+AA  GH+EVVKLLL   A++ A+D
Sbjct: 28  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD 87

Query: 117 RWGSTAAADAKYYGNVEVYNILK 139
           ++G TA   +   GN ++  IL+
Sbjct: 88  KFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 93  AACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK-- 149
            +   H      L+ + +++ +          +A   G  +   IL A GA V  K K  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD---LGKKLLEAARAGQDDEVRILMANGADVAAKDKNG 57

Query: 150 RTPMTVA 156
            TP+ +A
Sbjct: 58  STPLHLA 64

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 94.8 bits (237), Expect = 9e-24
 Identities = 31/77 (40%), Positives = 42/77 (54%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           VE LL  G D      +G T   +AA  G V+++KL LSK A+++  D +G TA  +A  
Sbjct: 55  VELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114

Query: 129 YGNVEVYNILKARGAKV 145
           YG V+    L  RGA V
Sbjct: 115 YGKVKALKFLYKRGANV 131

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 92.1 bits (230), Expect = 8e-23
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAK 127
              LL+ G DVN     G+T L +A  + H+ +V+ LL ++   I+  D  G TA   A 
Sbjct: 202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

Query: 128 YYGNVEVYNILKARGAKV 145
                ++  +L  RGA  
Sbjct: 262 ELKLKKIAELLCKRGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 91.4 bits (228), Expect = 1e-22
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLD-GRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           L  A    DV  V+ LL  G +VN  + + G T LH A      ++V+LLL   A+   R
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68

Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV 145
            + G+T    A   G+V++  +  ++GA V
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADV 98

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.4 bits (215), Expect = 1e-20
 Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 15/114 (13%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
             +A   G VK ++  L++G DVN  D  G TA   AA  G V+ +K L  + AN++ R 
Sbjct: 76  FLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR 135

Query: 117 ----------RWGSTAAADAKYYGNVEVYNIL-KARGAKV-PKTK--RTPMTVA 156
                     + G+TA  DA   G+VEV  IL    GA V       R  +  A
Sbjct: 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 80.6 bits (200), Expect = 2e-18
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 9/109 (8%)

Query: 57  LLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHV----EVVKLLLSKKAN 111
           L+  A  G V+ ++ LL+E G DVN+ D  GR AL  A           +  LLL   A+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 112 IDARDRWGSTAAADAKYYGNVEVYNIL-KARGAKV-PKTK--RTPMTVA 156
           ++ R   G T    A    ++ +   L +    ++       +T + +A
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 80.2 bits (199), Expect = 2e-18
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 58  LFMACS-GDVKGVEDLL-NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           L +A     +  V+ LL  E I++N  D DG+TAL +A      ++ +LL  + A+ D  
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

Query: 116 D 116
           D
Sbjct: 283 D 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.9 bits (180), Expect = 9e-16
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDR-WGSTA---AADAKYYGNVEVYNILKA 140
           +    L  A     V++V+ LL   AN++ ++   G T    A         ++  +L  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAV---QMSREDIVELLLR 60

Query: 141 RGAKV 145
            GA  
Sbjct: 61  HGADP 65

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 93.3 bits (233), Expect = 1e-23
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           ++     G  +   +L+  G DV   D +  T LH AA    +++VK  +SK A +D   
Sbjct: 13  IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLG 72

Query: 117 R-WGSTAAADAKYYGNVEVYNILKARGAKV 145
               ST    A   G++ +   L   GA  
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADP 102

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 92.9 bits (232), Expect = 2e-23
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%)

Query: 69  VEDLLNEGIDVNSID-LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK 127
              LL   + VN  D     TALH A   G+  V+ LLL   AN+DA++  G +A   AK
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218

Query: 128 YYGNVEVYNILKARGAKV 145
              NV + N L+      
Sbjct: 219 QRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.4 bits (223), Expect = 4e-22
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           V  L+  G D + ID +G + +H+AA  GH  +V  L++K  ++D  D+ G T    A Y
Sbjct: 92  VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151

Query: 129 YGN-VEVYNILKARGAKV 145
             + V+   +L      V
Sbjct: 152 RTHSVDPTRLLLTFNVSV 169

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.0 bits (222), Expect = 6e-22
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 9/116 (7%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLD-GRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           L  A     +  V+  +++G  V+ +  D   T LH A  +GH+ +V  L+   A+    
Sbjct: 46  LHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLI 105

Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA----NPREVPEY 164
           D  G +    A  +G+  +   L A+G  V    +   TP+  A    +  +    
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRL 161

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 86.7 bits (216), Expect = 4e-21
 Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH-VEVVKLLLSKKANIDAR 115
           + +A   G    V  L+ +G DV+ +D +G T L  AA   H V+  +LLL+   +++  
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG 172

Query: 116 DRW-GSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           D++  +TA   A   GN  V ++L   GA V  +     + + +A
Sbjct: 173 DKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLA 217

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 81.3 bits (202), Expect = 4e-19
 Identities = 12/67 (17%), Positives = 24/67 (35%)

Query: 79  VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 138
           +  ID      +  A   G  E  + L+    ++   D+   T    A     +++    
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 139 KARGAKV 145
            ++GA V
Sbjct: 62  ISKGAIV 68

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 73.2 bits (181), Expect = 4e-16
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  A   G+   +  LL  G +V++ ++ G +AL +A    +V ++  L   +      +
Sbjct: 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 94.1 bits (235), Expect = 2e-23
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLD-GRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 119
               D + V  L + G D+N  +   GRT LH+A       V++LLL   A+  AR   G
Sbjct: 166 VIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG 225

Query: 120 STA---AADAKYYGNVEVYNILKARGAKVP-KTK--RTP 152
            T    A       N  +  +L+A GA  P       +P
Sbjct: 226 RTPLGSAL---LRPNPILARLLRAHGAPEPEDGGDKLSP 261

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.1 bits (227), Expect = 2e-22
 Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 3/112 (2%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDL---DGRTALHIAACEGHVEVVKLLLSKKANIDARDR 117
                   ++ LL        +DL    G+TALH+AA  G    V+ L +  A +   +R
Sbjct: 17  VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76

Query: 118 WGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPL 169
            G TA   A          +L       P+         +    P+    P 
Sbjct: 77  GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 91.1 bits (227), Expect = 2e-22
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A        +E LL  G D  +    GRT L  A    +  + +LL +  A      
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG 255

Query: 117 RWGSTAAADAKYYGNVEV 134
               +  + +    + + 
Sbjct: 256 GDKLSPCSSSGSDSDSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 90.3 bits (225), Expect = 4e-22
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
            +    + + +      +  + + + + DG T LH+A      E+V+LL    A+++  +
Sbjct: 129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPE 188

Query: 117 R-WGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTP 152
              G T    A          V  +L   GA    +    RTP
Sbjct: 189 PTCGRTPLHLAV---EAQAASVLELLLKAGADPTARMYGGRTP 228

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 79  VNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN---IDARDRWGSTA---AADAKYYGNV 132
              +  DG TALH+A    H   +  LL   A    +D ++  G TA   AA     G  
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA---ILGEA 58

Query: 133 EVYNILKARGAKV 145
                L A GA V
Sbjct: 59  STVEKLYAAGAGV 71

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.3 bits (160), Expect = 6e-13
 Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 25/117 (21%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRT--------------ALHIAACEGHVEVV 102
           L +AC          LL           D                 A   +      E  
Sbjct: 82  LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEE 141

Query: 103 KLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKARGAKV----PKTKRTP 152
                 +  ++A +  G T    A     + + E+  +L+  GA +    P   RTP
Sbjct: 142 PRDEDWRLQLEAENYDGHTPLHVAV---IHKDAEMVRLLRDAGADLNKPEPTCGRTP 195

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 5/51 (9%), Positives = 10/51 (19%), Gaps = 1/51 (1%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
           L  A    +      L   G        D  +    +  +   +       
Sbjct: 229 LGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 91.3 bits (228), Expect = 3e-23
 Identities = 26/77 (33%), Positives = 39/77 (50%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
            E LL++G +VN+ D  G+T L  +   G+ E+   LL   AN++ R+  G T    A  
Sbjct: 84  AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK 143

Query: 129 YGNVEVYNILKARGAKV 145
           YG  E+   L   GA +
Sbjct: 144 YGRSEIVKKLLELGADI 160

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 90.5 bits (226), Expect = 6e-23
 Identities = 30/70 (42%), Positives = 39/70 (55%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
              LL  G +VN  +L+G T L +A+  G  E+VK LL   A+I ARD  G TA A A+ 
Sbjct: 117 SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARI 176

Query: 129 YGNVEVYNIL 138
           +G  EV  I 
Sbjct: 177 FGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 90.1 bits (225), Expect = 7e-23
 Identities = 21/77 (27%), Positives = 37/77 (48%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           ++ L+     +   D++G TAL  A     + + + LLSK +N++ +D  G T    +  
Sbjct: 51  IDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110

Query: 129 YGNVEVYNILKARGAKV 145
           +G  E+   L   GA V
Sbjct: 111 FGYSEMSYFLLEHGANV 127

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 84.0 bits (209), Expect = 2e-20
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
                     + ++ L N        D   RT L +A   G    +  L+     ++ +D
Sbjct: 12  EKIKDEKSINQNLDFLRNYR------DSYNRTPLMVACMLGMENAIDKLVENFDKLEDKD 65

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
             GSTA   A     + +   L ++G+ V
Sbjct: 66  IEGSTALIWAVKNNRLGIAEKLLSKGSNV 94

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.9 bits (157), Expect = 6e-13
 Identities = 15/42 (35%), Positives = 22/42 (52%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA 110
           V+ LL  G D+++ DL G TA   A   G  EV+K+    + 
Sbjct: 150 VKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 53.2 bits (129), Expect = 5e-09
 Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 6/66 (9%)

Query: 80  NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILK 139
           + +D +G     I   +   + +  L       + RD +  T    A   G     + L 
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 140 ARGAKV 145
               K+
Sbjct: 56  ENFDKL 61

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 93.0 bits (232), Expect = 4e-23
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 4/103 (3%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  A +  D K V+ LL  G+D +  D  G TAL+ A   G+++ VKL + K   +    
Sbjct: 66  LHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYG 125

Query: 117 RWG-STAAADAKYYGNVEVYNILKARGAKVPKTK--RTPMTVA 156
           + G  T+   A    +V + +   +            + + + 
Sbjct: 126 KTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHIT 168

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 92.6 bits (231), Expect = 7e-23
 Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
            + A +  +V+ V  LLN G   N ++      LH AA     ++VK+LL    +    D
Sbjct: 35  SYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFD 92

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV 145
             G+TA   A   GN++   +   +  ++
Sbjct: 93  DKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 90.3 bits (225), Expect = 4e-22
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 13/104 (12%)

Query: 55  MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 114
           M L  +  +   K ++  L+   D    D+ G +A + A  + +V +V  LL+  A  + 
Sbjct: 2   MDLSRIN-TWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59

Query: 115 RDRWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTP 152
            +         AA      + ++  IL   G           T 
Sbjct: 60  LE--NEFPLHQAA---TLEDTKIVKILLFSGLDDSQFDDKGNTA 98

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 86.0 bits (214), Expect = 2e-20
 Identities = 15/127 (11%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRT-ALHIAACEGHVEVVKLLLSKKANIDAR 115
           + +    G V  +  LL+     N+ +       + +A     +E+++ L     NI + 
Sbjct: 165 IHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSA 224

Query: 116 DRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTKRTPMTVANPREVPEYELNPLELQVR 174
           +              + E+  ++  +  +    +    + +    ++ E      EL++ 
Sbjct: 225 NLENV-------LLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLM 277

Query: 175 KADGITK 181
             + + K
Sbjct: 278 YVNCVKK 284

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.5 bits (210), Expect = 6e-20
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
            + A    DV  V   L+E            + +HI    GHV+++ LLL    + +  +
Sbjct: 133 FYHAVMLNDVSIVSYFLSEIPSTFD-LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNN 191

Query: 117 RWGSTAA-ADAKYYGNVEVYNILKARGAKV 145
                     A    ++E+   L      +
Sbjct: 192 SLLFIPDIKLAIDNKDIEMLQALFKYDINI 221

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 57  LLFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
            + +A    D++ ++ L    I++        +A          E+ K+++ K     + 
Sbjct: 198 DIKLAIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSD 250

Query: 116 DRWGSTAAADAKYYGNVEVYNIL 138
                           +   N  
Sbjct: 251 SYTKDLDIVKNNKLDEIISKNKE 273

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 91.8 bits (229), Expect = 4e-23
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 1/86 (1%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSID-LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 119
           +  G +  VE L++ G DVN+ +  +GRTALH+A    + ++V LLL   A+++     G
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG 184

Query: 120 STAAADAKYYGNVEVYNILKARGAKV 145
            +         +  +   L     + 
Sbjct: 185 YSPYQLTWGRPSTRIQQQLGQLTLEN 210

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.6 bits (218), Expect = 2e-21
 Identities = 15/78 (19%), Positives = 29/78 (37%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           +  +  +   +N  +   +T LH+A      E+ + LL    + + RD  G+T    A  
Sbjct: 28  IRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACE 87

Query: 129 YGNVEVYNILKARGAKVP 146
            G +    +L        
Sbjct: 88  QGCLASVGVLTQSCTTPH 105

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.8 bits (208), Expect = 5e-20
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 12/86 (13%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN------IDARDRWGSTA 122
            E LL  G D    D  G T LH+A  +G +  V +L            + A +  G T 
Sbjct: 61  AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC 120

Query: 123 ---AADAKYYGNVEVYNILKARGAKV 145
              A+    +G + +  +L + GA V
Sbjct: 121 LHLAS---IHGYLGIVELLVSLGADV 143

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 82.2 bits (204), Expect = 2e-19
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 17/109 (15%)

Query: 58  LFMACS-GDVKGVEDLLNEGID------VNSIDLDGRTALHIAACEGHVEVVKLLLSKKA 110
           L +AC  G +  V  L            + + + +G T LH+A+  G++ +V+LL+S  A
Sbjct: 82  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141

Query: 111 NIDARDRW-GSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTP 152
           +++A++   G TA   A       N ++ ++L   GA V   T    +P
Sbjct: 142 DVNAQEPCNGRTALHLAV---DLQNPDLVSLLLKCGADVNRVTYQGYSP 187

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 72.6 bits (179), Expect = 7e-16
 Identities = 10/74 (13%), Positives = 17/74 (22%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
               +   V  LL  G DVN +   G +   +        + + L               
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 218

Query: 121 TAAADAKYYGNVEV 134
              +        E 
Sbjct: 219 DEESYDTESEFTEF 232

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.5 bits (158), Expect = 6e-13
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 82  IDLDGRTALHIAACEGH----VEVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEV 134
           +  DG + LH+A         +EV++ +    A ++ ++    T    A         E+
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV---ITNQPEI 60

Query: 135 YNILKARGAKV 145
              L   G   
Sbjct: 61  AEALLGAGCDP 71

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 93.9 bits (234), Expect = 6e-23
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 61  ACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 119
           A   ++  V+ L+ E G + +  D DG+T + +AA EG +EVV  L+ + A+++A D   
Sbjct: 287 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD 346

Query: 120 STAAADAKYYGNVEVYNILKARGAKV 145
            TA   A+   +  + +I      + 
Sbjct: 347 HTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 88.5 bits (220), Expect = 6e-21
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK---ANIDARDR 117
             +   + V  L+  G D    +   R+ALH AA      ++  +L+      +I+  DR
Sbjct: 174 VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233

Query: 118 WGSTA---AADAKYYGNVEVYNILKARGAKV 145
            G TA    A  +    V    +L  +GAKV
Sbjct: 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKV 264

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 88.1 bits (219), Expect = 7e-21
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 67  KGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA 126
              ++ +  G DVN++D D  T L +A       +V  L+   A+    ++   +A   A
Sbjct: 147 HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA 206

Query: 127 KYYGNVEVYNIL---KARGAKV 145
               +  +   +         +
Sbjct: 207 AANRDFGMMVYMLNSTKLKGDI 228

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 81.9 bits (203), Expect = 1e-18
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 18/108 (16%)

Query: 64  GDVKGVEDLLNEGIDVN--------SIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDA 114
             V   + L+ +G  V+        S    GRTALH AA   ++ +VK L+ +K +N D 
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308

Query: 115 RDRWGSTA---AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
           +D  G T    AA     G +EV   L  +GA V        T   +A
Sbjct: 309 QDEDGKTPIMLAA---QEGRIEVVMYLIQQGASVEAVDATDHTARQLA 353

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 81.9 bits (203), Expect = 1e-18
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-------- 109
           L    +G     E +  E +++       RT LH  A     E  + L+  +        
Sbjct: 98  LHTEAAGSYAITEPITRESVNIIDPR-HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156

Query: 110 ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           A+++A D   +T    A       +   L   GA  
Sbjct: 157 ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP 192

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.4 bits (181), Expect = 1e-15
 Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 8/87 (9%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
             +G+    +            + +    LH  A  G   + + +  +  NI    R   
Sbjct: 69  YGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID-PRHNR 126

Query: 121 TA---AADAKYYGNVEVYNILKARGAK 144
           T     A      + E    L    AK
Sbjct: 127 TVLHWIA---SNSSAEKSEDLIVHEAK 150

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 6/88 (6%), Positives = 17/88 (19%), Gaps = 9/88 (10%)

Query: 74  NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYG 130
                 N +              G+  +     +        +          A     G
Sbjct: 49  YIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA----AG 104

Query: 131 NVEVYNILKARGAKVPKTK--RTPMTVA 156
           +  +   +      +   +  RT +   
Sbjct: 105 SYAITEPITRESVNIIDPRHNRTVLHWI 132

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.7 bits (179), Expect = 2e-15
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 24/113 (21%)

Query: 61  ACSGDVKGVEDLLN---EGIDVNSIDLDGRTALHIAACEGH---VEVVKLLLSKKANI-- 112
           A + D   +  +LN      D+  +D +G TAL I A       V   KLL+ K A +  
Sbjct: 207 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY 266

Query: 113 ------DARDRWGSTA---AADAKYYGNVEVYNIL-KARGAKV-PKTK--RTP 152
                 D+    G TA   AA      N+ +   L   +G+    + +  +TP
Sbjct: 267 DGAARKDSEKYKGRTALHYAA---QVSNMPIVKYLVGEKGSNKDKQDEDGKTP 316

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.5 bits (176), Expect = 6e-15
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID 113
           + +A   G ++ V  L+ +G  V ++D    TA  +A    H  +V +    +   +
Sbjct: 317 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 91.9 bits (229), Expect = 3e-22
 Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 19/136 (13%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           + +A   G    V  L+  G+     +  G TALH+A   G V+  K L S         
Sbjct: 24  IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWH 83

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA---NPREVPEYELNPLELQV 173
             G      A      ++   L     +     + P ++    + REV E   +     V
Sbjct: 84  --GQKPIHLAVMANKTDLVVALVEGAKER---GQMPESLLNECDEREVNEIGSH-----V 133

Query: 174 RKADGITKAWPVPLIF 189
           +   G T      L +
Sbjct: 134 KHCKGQT-----ALHW 144

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 88.4 bits (220), Expect = 6e-21
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 4/106 (3%)

Query: 54  TMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID 113
             + L +  +          + G  V    +     +  AA     EV++LL  K   + 
Sbjct: 259 LTKEL-LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVV 317

Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
                G+  A   K      V  +  A  A V  +++       V+
Sbjct: 318 RSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 87.6 bits (218), Expect = 1e-20
 Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 74  NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA---AADAKYYG 130
              ++    D +    +H+AA +G  + V+ L+    +   ++R+G TA   A     +G
Sbjct: 8   FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLAC---KFG 64

Query: 131 NVEVYNILKARGAKV-PKTKRTP 152
            V+    L + G        + P
Sbjct: 65  CVDTAKYLASVGEVHSLWHGQKP 87

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.5 bits (215), Expect = 3e-20
 Identities = 11/121 (9%), Positives = 34/121 (28%), Gaps = 12/121 (9%)

Query: 58  LFMAC-SGDVKGVEDLLNE-----GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           L  A    + + ++ +++       + ++  +  G + LH A      +V    +    +
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236

Query: 112 IDARDRWGSTA---AADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNP 168
           ++  D   +     +        V +   L  +                        L+ 
Sbjct: 237 VNMEDNEHTVPLYLSV---RAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDF 293

Query: 169 L 169
           +
Sbjct: 294 V 294

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 85.3 bits (212), Expect = 7e-20
 Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 1/89 (1%)

Query: 40  PVQDELTVPENLDSTMQLLFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH 98
           P  +  TV  +    +  +  A      + ++ L  +  +V      G         +  
Sbjct: 276 PYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAA 335

Query: 99  VEVVKLLLSKKANIDARDRWGSTAAADAK 127
             V ++ L+  A +  R R  + ++A +K
Sbjct: 336 PAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.8 bits (208), Expect = 3e-19
 Identities = 15/99 (15%), Positives = 33/99 (33%), Gaps = 14/99 (14%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL-----SKKANIDARDRWGSTA- 122
           ++ L+  G    + D    T L  A    + E + L++          +D  ++ G++  
Sbjct: 156 IKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215

Query: 123 --AADAKYYGNVEVYNILKARGAKV-PKTK--RTPMTVA 156
             A         +V       G  V  +      P+ ++
Sbjct: 216 HWAI---LINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 75.3 bits (186), Expect = 2e-16
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 76  GIDVNSIDLDGRTALHIAACEG--HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVE 133
            I  +     G+TALH     G  ++E++K+L+   A+  A+D+   T    A  + N E
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE 187

Query: 134 VYNIL 138
             +++
Sbjct: 188 ALDLM 192

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 87.9 bits (219), Expect = 1e-21
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDAR 115
           L +A      +  + L+  G  V   D   +  LH AA  G +++++LL    K+ ++ +
Sbjct: 111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170

Query: 116 DRWGSTAAADAKYYGNVEVYNIL-KARGAKV-PKTK--RTPMTVANPREVPEY 164
           D+ G T    A   G+ +   +L +  GA+             VA   +V ++
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKF 223

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 86.7 bits (216), Expect = 3e-21
 Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 58  LFMACS-GDVKGVEDLLN--EGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 114
             +ACS G+++ V+ L +     D+N I   G T LH+A  +   EV + L+   A++  
Sbjct: 76  FHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135

Query: 115 RDRWGSTAAADAKYYGNVEVYNILKARGA 143
           +D++       A   G++++  +L   G 
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLGK 164

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 85.2 bits (212), Expect = 1e-20
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 58  LFMACS-GDVKGVEDLL-NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI--- 112
           L  AC   +   V++LL ++   +   D DGR  LH +      E+   LLSK  N+   
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65

Query: 113 DARDRWGSTAAADAKYYGNVEVYNIL--KARGAKV-PKTK--RTP 152
           D  D  G T    A   GN+EV   L  +     +   T    T 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 86  GRTALHIAACEGHV-EVVKLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKAR 141
               LH A  E    +V +LL SK + +  +D+ G      +     +   E+ + L ++
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSV---SFQAHEITSFLLSK 58

Query: 142 GAKV 145
              V
Sbjct: 59  MENV 62

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 49.4 bits (119), Expect = 1e-07
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 9/54 (16%)

Query: 58  LFMAC---SGDVKGVEDLL-NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
           LF A     GD      L+   G + + +D  G  A  +A    + +V K  L+
Sbjct: 178 LFHALAEGHGDA--AVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLN 226

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 87.3 bits (217), Expect = 3e-21
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 12/98 (12%)

Query: 57  LLFMACSGDVKGVEDLL-NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI--- 112
           LL  A   DV+ +  LL  EG +V+     G TALHIAA   ++E   +L+     +   
Sbjct: 7   LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66

Query: 113 --DARDRWGSTA---AADAKYYGNVEVYNILKARGAKV 145
              +    G TA   A       NV +   L ARGA V
Sbjct: 67  PMTSELYEGQTALHIAV---INQNVNLVRALLARGASV 101

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 18/103 (17%)

Query: 61  ACSGDVKGVEDLLNEGIDV-----NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           A   +++    L+    ++      S   +G+TALHIA    +V +V+ LL++ A++ AR
Sbjct: 45  ALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSAR 104

Query: 116 DR-------------WGSTAAADAKYYGNVEVYNILKARGAKV 145
                          +G    + A   G+ E+  +L   GA +
Sbjct: 105 ATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 79.6 bits (197), Expect = 2e-18
 Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 23/109 (21%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLD-------------GRTALHIAACEGHVEVVK 103
           L     + +V  V  LL  G  V++                 G   L  AAC G  E+V+
Sbjct: 79  LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVR 138

Query: 104 LLLSKKANIDARDRWGSTA---AADAKYYGNVEV----YNILKARGAKV 145
           LL+   A+I A+D  G+T            N       YN+L +     
Sbjct: 139 LLIEHGADIRAQDSLGNTVLHILI---LQPNKTFACQMYNLLLSYDGGD 184

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 77.3 bits (191), Expect = 1e-17
 Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 10/99 (10%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV----KLLLSKKANI 112
           L F AC G  + V  L+  G D+ + D  G T LHI   + +         LLLS     
Sbjct: 125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184

Query: 113 DA------RDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
                    +  G T    A   GN+ ++  L  +   +
Sbjct: 185 HLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.9 bits (164), Expect = 9e-14
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 86  GRTALHIAACEGHVEVV-KLLLSKKANIDARDRWGSTA---AADAKYYGNVEVYNILKAR 141
             + L +AA E  V+ + KLL  +   +  R   G TA   AA    Y N+E   +L   
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAA---LYDNLEAAMVLMEA 59

Query: 142 GAKVPKT 148
             ++   
Sbjct: 60  APELVFE 66

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 81.3 bits (201), Expect = 2e-19
 Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 14/102 (13%)

Query: 58  LFMACS-------GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVE------VVKL 104
            F           G  +  +  L +G D+ ++    +  +        V+      + KL
Sbjct: 79  FFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKL 138

Query: 105 LLSKK-ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV 145
           + S+    +  +D+WG TA    K         +++    K 
Sbjct: 139 IFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 72.4 bits (178), Expect = 3e-16
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 12/112 (10%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSI---DLDGRTALHIAACEGHVEVVKLLLSKKANID 113
           +   A  G  +   +L  +G +              L     E   ++   L++K A+I 
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69

Query: 114 ARDRWGSTAAADAKYYGN------VEVYNILKARGAKV-PKTK--RTPMTVA 156
           +R + G+T        G        E+  I   +GA +    K  +  +   
Sbjct: 70  SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKN 121

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 68.9 bits (169), Expect = 7e-15
 Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 7/67 (10%)

Query: 57  LLFMACSGDVKGVED-------LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 109
           +     +  V   E            G+ +   D  G TAL           +K++    
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177

Query: 110 ANIDARD 116
              + ++
Sbjct: 178 KKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 6/79 (7%)

Query: 84  LDGRTALHIAACEGHVEVVKLLLSKKANI---DARDRWGSTAAADAKYYGNVEVYNILKA 140
           +     +  AA  G  E    L  K         +         +       ++   L  
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 141 RGAKV-PKTK--RTPMTVA 156
           +GA +  +TK   T     
Sbjct: 64  KGADIKSRTKEGTTLFFPL 82

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 80.1 bits (197), Expect = 4e-18
 Identities = 25/131 (19%), Positives = 45/131 (34%), Gaps = 14/131 (10%)

Query: 3   DRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMAC 62
           ++++  +   Q    P    M  S    SS                E   S  Q   ++ 
Sbjct: 58  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRN------------SEGGSSNQQQQHVSF 105

Query: 63  SGDVK-GVEDLLNEGIDVNS-IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS 120
              ++   +   N  +++N  +D  G T LH      ++E+VK L+   +N    D  G 
Sbjct: 106 DSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE 165

Query: 121 TAAADAKYYGN 131
           +    A    N
Sbjct: 166 SCLVKAVKSVN 176

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 73.1 bits (179), Expect = 1e-15
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 66  VKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 122
           ++ ++        +N+ D +G T L+IAA  G++ +V  LL   A+    ++ G   
Sbjct: 263 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 319

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.0 bits (124), Expect = 3e-08
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 68  GVEDLLNEGIDVNSIDLDGRTALHIAA----CEGHVEVVKLLLSKKANIDARDRWGSTAA 123
            +  ++ +         + + +          +  +E + L       ++A+D  G T  
Sbjct: 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCL 287

Query: 124 ADAKYYGNVEVYNILKARGAKV 145
             A   GN+ + + L   GA  
Sbjct: 288 NIAARLGNISIVDALLDYGADP 309

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 70  EDLLNEGIDVNSIDLDGRTALHIAACEGHV-EVVKLLLSKKANIDA-RDRWGSTA---AA 124
             L N+  + NS            + +  + EV     + + N++   D  G+T      
Sbjct: 80  TSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLT 139

Query: 125 DAKYYGNVEVYNILKARGAKV 145
                 N+E+   L   G+  
Sbjct: 140 ---SIANLELVKHLVKHGSNR 157

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 41.2 bits (96), Expect = 1e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAA 94
           A  G++  V+ LL+ G D    +  G   +   A
Sbjct: 291 ARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 80.0 bits (197), Expect = 7e-18
 Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD--RW 118
            CS  +  +  LL     V  I  +   A  +AA  GH+ V+  L               
Sbjct: 103 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE 162

Query: 119 GSTAAADAKYYGNVEVYNILKARGAKV 145
              A   A   G++ V N L       
Sbjct: 163 NYHAFRLAAENGHLHVLNRLCELAPTE 189

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 69.6 bits (170), Expect = 3e-14
 Identities = 17/102 (16%), Positives = 27/102 (26%), Gaps = 12/102 (11%)

Query: 58  LFMACSG---DVKGVEDLLNEGIDVNSIDL--DGRTALHIAACEGHVEVVKLLLSKKANI 112
             +A       V  +  L           +  +   A  +AA  GH+ V+  L       
Sbjct: 132 FRLAAENGHLHV--LNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 189

Query: 113 DARD--RWGSTAA--ADAKYYGNVEVYNILKARGAKVPKTKR 150
                      A   A A   G+  V N L      +   + 
Sbjct: 190 ATAMIQAENYYAFRWA-AVGRGHHNVINFLLDCPVMLAYAEI 230

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.5 bits (149), Expect = 2e-11
 Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 16/106 (15%)

Query: 58  LFMACSG---DVKGVEDLLNEGIDVNSIDL--DGRTALHIAACE-GHVEVVKLLLSKKAN 111
             +A       V  +  L        +  +  +   A   AA   GH  V+  LL     
Sbjct: 167 FRLAAENGHLHV--LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM 224

Query: 112 IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVAN 157
           +   +            YG   V   +     ++ K       ++N
Sbjct: 225 LAYAEIHEFE-------YGEKYVNPFIARHVNRL-KEMHDAFKLSN 262

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.5 bits (149), Expect = 2e-11
 Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 5/112 (4%)

Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 109
           N++   QLL +  +   +  + L ++                I  C   ++ + LLL+  
Sbjct: 59  NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD 118

Query: 110 ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTK-----RTPMTVA 156
             +         A   A   G++ V N L                     +A
Sbjct: 119 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA 170

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 60.0 bits (145), Expect = 6e-11
 Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 9/83 (10%)

Query: 44  ELTVPENLDSTMQLLFMACSGDVKGVEDLL---------NEGIDVNSIDLDGRTALHIAA 94
           +L           +L      + + + D +                +I  D    L +A 
Sbjct: 268 DLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLAL 327

Query: 95  CEGHVEVVKLLLSKKANIDARDR 117
             G+     LLLS  + +     
Sbjct: 328 RLGNQGACALLLSIPSVLALTKA 350

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 77.9 bits (192), Expect = 1e-17
 Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 28/168 (16%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
            L +  +     ++  +N           G+TALHIA    ++ +V LL+   A++ A  
Sbjct: 74  ALLLDVARKTDSLKQFVNA--SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAA 131

Query: 117 R--------------WGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVP 162
                          +G    + A     + +   L     +           A+     
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ----------PADISARD 181

Query: 163 EYELNPLELQVRKADGITKAWPVPLIFVHYVILLRQAGSFNQELEYVN 210
                 L   V  AD          +   Y  +L      +  L+   
Sbjct: 182 SVGNTVLHALVEVADNTVDN--TKFVTSMYNEILILGAKLHPTLKLEE 227

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 28/136 (20%), Positives = 42/136 (30%), Gaps = 24/136 (17%)

Query: 58  LFMACS-GDVKGVEDLLN-------EGIDVNSIDLD-GRTALHIAAC---EGHVEVVKLL 105
           +F A +  + + +E LL           D    D + G+T L  A      G  + + LL
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 106 LSKKANIDA-----------RDRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTKRTPM 153
           L      D+               G TA   A    N+ +  +L   GA V         
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 154 TVANPREVPEYELNPL 169
                R    +   PL
Sbjct: 137 KKTKGRPGFYFGELPL 152

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 62.9 bits (153), Expect = 3e-12
 Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 23/119 (19%)

Query: 57  LLFMACSGDVKGVEDLLNEGI---DVNSIDLDGRTALHIAACEGH--------------- 98
           L   AC+  +  V+ LL       D+++ D  G T LH                      
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

Query: 99  -VEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVA 156
            + +   L       +  +R G T  A A   G + V   +  R              A
Sbjct: 212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHE----PECRHAA 266

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
              L          +  G T L +AA  G + V+  +L ++ +              A +
Sbjct: 216 GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAH 268

Query: 129 YGN 131
           + +
Sbjct: 269 HHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 51.7 bits (124), Expect = 3e-08
 Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 13/105 (12%)

Query: 76  GIDVNSIDLDGRTALHIAACEGHVEVVKLLL-------SKKANIDARDR-WGSTA---AA 124
                   L  R ++  A  + + + ++ LL        +  + + +D   G T    A 
Sbjct: 3   SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62

Query: 125 DAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPL 169
              + G  +   +L     K    K+     A+  +        L
Sbjct: 63  LNLHNGQNDTIALLLDVARKTDSLKQ--FVNASYTDSYYKGQTAL 105

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 73.7 bits (181), Expect = 4e-16
 Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 13/82 (15%)

Query: 76  GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR-------------WGSTA 122
                     G +ALHIA  +  ++ VKLL+   A++  R               +G   
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELP 139

Query: 123 AADAKYYGNVEVYNILKARGAK 144
            + A      +V   L     +
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQ 161

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 20/109 (18%), Positives = 33/109 (30%), Gaps = 19/109 (17%)

Query: 57  LLFMACSGDVKGVEDLLNEGI---DVNSIDLDGRTALH----------------IAACEG 97
           L   AC+     V  LL        + + D  G T LH                I   +G
Sbjct: 140 LSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDG 199

Query: 98  HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP 146
            +++   L       +  +  G T    A   G +E++  +  R     
Sbjct: 200 LLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 114
              G ++    L          +  G T L +AA EG +E+ + +L ++ +  A
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 64.0 bits (156), Expect = 1e-12
 Identities = 23/138 (16%), Positives = 36/138 (26%), Gaps = 29/138 (21%)

Query: 58  LFMACS-GDVKGVEDLL--------NEGIDVNSIDLDGRTALHIAAC---EGHVEVVKLL 105
           LF   S G  + +  LL               +    G+T L  A     +G    +  L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 106 LS-----------KKANIDARDRWGSTA---AADAKYYGNVEVYNILKARGAKVPKTKRT 151
           L              A        G +A   A       +++   +L   GA V      
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAI---EKRSLQCVKLLVENGADVHLRACG 122

Query: 152 PMTVANPREVPEYELNPL 169
                +      +   PL
Sbjct: 123 RFFQKHQGTCFYFGELPL 140

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 15/95 (15%), Positives = 20/95 (21%), Gaps = 13/95 (13%)

Query: 86  GRTALHIAACEGHVEVVKLLLSK--------KANIDARDRWGSTA---AADAKYYGNVEV 134
            R  L      G  E +  LL            +       G T    A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 135 YNILKARGAKVPKTKRTPMTVANPREVPEYELNPL 169
              L          K  P+  A   +      + L
Sbjct: 62  IMPLLQIDKDSGNPK--PLVNAQCTDEFYQGHSAL 94

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 16/101 (15%)

Query: 58  LFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR 117
           + +  +     + + +N       +   G+TALHIA        V+LL+ K A++ A+ R
Sbjct: 67  ILLDIAEKTGNMREFINS--PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 118 --------------WGSTAAADAKYYGNVEVYNILKARGAK 144
                         +G    + A       + + L   G K
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK 165

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 24/140 (17%), Positives = 39/140 (27%), Gaps = 30/140 (21%)

Query: 57  LLFMACS-GDVKG----VEDLLNEGIDVNSIDL----DGRTALHIAA---CEGHVEVVKL 104
           +LF   S G   G    +  LL     +   +      G+T L  A      G  + + +
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 105 LLSK-----------KANIDARDRWGSTA---AADAKYYGNVEVYNILKARGAKVP-KTK 149
           LL              +        G TA   A             +L  +GA V  + +
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI---ERRCKHYVELLVEKGADVHAQAR 124

Query: 150 RTPMTVANPREVPEYELNPL 169
                  +      +   PL
Sbjct: 125 GRFFQPKDEGGYFYFGELPL 144

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 22/115 (19%), Positives = 33/115 (28%), Gaps = 25/115 (21%)

Query: 57  LLFMACSGDVKGVEDLLNEGI---DVNSIDLDGRTALHIAACEGH---------VEVVKL 104
           L   AC+     V  L   G    D+   D  G T LH                 ++  L
Sbjct: 144 LSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL 203

Query: 105 LLSKKANIDA-------RDRWGSTA---AADAKYYGNVEVYNILKARGAKVPKTK 149
           LL K A +          +  G +    AA     G + ++  +  R        
Sbjct: 204 LLIKCAKLFPDTNLEALLNNDGLSPLMMAA---KTGKIGIFQHIIRREIADAAAH 255

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 13/95 (13%)

Query: 86  GRTALHIAA----CEGHVEVVKLLLSKKANIDARDRW----GSTA---AADAKYYGNVEV 134
            R  L         +G   ++  LL+ K  +   +      G T    A      G  + 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 135 YNILKARGAKVPKTKRTPMTVANPREVPEYELNPL 169
             IL     K    +      +  R+V       L
Sbjct: 65  IPILLDIAEKTGNMR--EFINSPFRDVYYRGQTAL 97

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 70.0 bits (171), Expect = 1e-14
 Identities = 21/71 (29%), Positives = 36/71 (50%)

Query: 69  VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           V+ ++  G  +++   DG TALH AA     + +KLLL  +A +   +  G TA   A+ 
Sbjct: 209 VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268

Query: 129 YGNVEVYNILK 139
             + E   +L+
Sbjct: 269 KHHKECEELLE 279

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 12/107 (11%)

Query: 62  CSGDVKGVEDLLNEGIDVNSIDL------DGRTALHIA---ACEGHVEVVKLLLSKKANI 112
           C+ D+  V +    G D                 LH+A   A +  + +V  ++    ++
Sbjct: 160 CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL 219

Query: 113 DARDRWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 156
           DA+   G+TA   A  Y   +   +L    A V    +   T + +A
Sbjct: 220 DAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           L  A        ++ LL     V +++  G TAL IA  + H E  +LL   +A 
Sbjct: 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 69.3 bits (169), Expect = 2e-14
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 57  LLFMAC----SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
            L +A        +  V+ L+    +++     G TALH      + E +KLLL  KA+I
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 231

Query: 113 DARDRWGSTAAADAKYYGNVEVYNIL 138
           +  +  G T    AK   +     +L
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 55.0 bits (132), Expect = 2e-09
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 12/107 (11%)

Query: 62  CSGDVKGVEDLLNEGIDVNSI------DLDGRTALHIAACEG---HVEVVKLLLSKKANI 112
            + D+ G+     +G+D+              TALH+A        + +V  L+    N+
Sbjct: 139 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL 198

Query: 113 DARDRWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVA 156
           D +   GSTA        N E   +L    A +    ++  TP+ +A
Sbjct: 199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 245

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.1 bits (101), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           L   C + + + ++ LL     +   +  G T L IA    H    +LL    + 
Sbjct: 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 66.3 bits (161), Expect = 4e-13
 Identities = 30/140 (21%), Positives = 47/140 (33%), Gaps = 3/140 (2%)

Query: 3   DRRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVP---ENLDSTMQLLF 59
             R   +   +         + F         P     +     V       D+   L+ 
Sbjct: 182 SLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQ 241

Query: 60  MACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 119
              +  +   E LL  G +VN  D  GR  LH A   GH  +  L L + A++ ARD  G
Sbjct: 242 ATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301

Query: 120 STAAADAKYYGNVEVYNILK 139
                 A    N ++  +L+
Sbjct: 302 RDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 54.4 bits (130), Expect = 4e-09
 Identities = 27/160 (16%), Positives = 46/160 (28%), Gaps = 5/160 (3%)

Query: 11  SRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVE 70
                    +  +      +     +R  P      +       +          +  + 
Sbjct: 158 RGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMA 217

Query: 71  DLLNEGIDVNSI--DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY 128
           D L  G DVN +    D  T L  A     +   + LL   AN++  D  G      A  
Sbjct: 218 DALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATI 277

Query: 129 YGNVEVYNILKARGAK---VPKTKRTPMTVANPREVPEYE 165
            G+  +  +   RGA         R P+T+A      +  
Sbjct: 278 LGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 60.3 bits (146), Expect = 5e-11
 Identities = 22/80 (27%), Positives = 39/80 (48%)

Query: 60  MACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWG 119
           +A    +  V+ ++  G  +++   DG TALH AA     + +KLLL  +A +   +  G
Sbjct: 181 VANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG 240

Query: 120 STAAADAKYYGNVEVYNILK 139
            TA   A+   + E   +L+
Sbjct: 241 ETALDIARKKHHKECEELLE 260

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 59.9 bits (145), Expect = 7e-11
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 12/118 (10%)

Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNS------IDLDGRTALHIA---ACEGHVEVV 102
               +L    C+ D+  V +    G D                 LH+A   A +  + +V
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190

Query: 103 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP---KTKRTPMTVAN 157
             ++    ++DA+   G+TA   A  Y   +   +L    A V    +   T + +A 
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248

>3uo9_A Glutaminase kidney isoform, mitochondrial; hydrolase-hydrolase inhibitor complex; HET: 04A; 2.30A {Homo sapiens} PDB: 3unw_A* 3ss3_A 3ss4_A 3ss5_A* Length = 534

 Score = 45.1 bits (106), Expect = 6e-06
 Identities = 12/95 (12%), Positives = 31/95 (32%), Gaps = 17/95 (17%)

Query: 4   RRLTRQMSRQSSFDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACS 63
             L    +   ++D  R+  +        LDP R           +   S   L + +  
Sbjct: 449 HDLVSLCNF-HNYDNLRHFAK-------KLDPRREGG--------DQRHSFGPLDYESLQ 492

Query: 64  GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH 98
            ++  +++ + + +   S +    T ++     G 
Sbjct: 493 QEL-ALKETVWKKVSPESNEDISTTVVYRMESLGE 526

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.92
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.92
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.92
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.92
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.91
2etb_A	256	Transient receptor potential cation channel subfam	99.91
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.91
2pnn_A	273	Transient receptor potential cation channel subfa	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.91
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.9
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.9
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.89
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.85
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.81
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.81
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.8
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.8
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.7

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.5e-31  Score=194.35  Aligned_cols=142  Identities=39%  Similarity=0.521  Sum_probs=85.2

Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 027950           56 QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY  135 (216)
Q Consensus        56 ~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~  135 (216)
                      +|+.||..|+.++|+.|+++|+++|.+|..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.+++
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v   86 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV   86 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHH
Confidence            46666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHcCC
Q 027950          136 NILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQAGS  201 (216)
Q Consensus       136 ~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~g~  201 (216)
                      ++|+++|+++|..   |+||||+|+..+..+    ++++|++.|++++   ..+.||++.|      .++++|++.|+
T Consensus        87 ~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~----~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A           87 KLLISKGADVNAKDSDGRTPLHHAAENGHKE----VVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             HHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            6666666665543   666666666555433    3555666666553   3455666555      45566666655

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.7e-30  Score=188.80  Aligned_cols=155  Identities=32%  Similarity=0.393  Sum_probs=139.0

Q ss_pred             cccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHH
Q 027950           23 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV  102 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  102 (216)
                      .++..+..|+.+.++.++..+......+..|.||||+|+..++.++++.|++.|++++.++..|.||||+|+..|+.+++
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v   86 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVV   86 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHH
Confidence            35667778999999998888887778889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCC
Q 027950          103 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGI  179 (216)
Q Consensus       103 ~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~  179 (216)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..   |+|||++|+..+..+    ++++|+++|+++
T Consensus        87 ~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~----iv~~Ll~~GA~i  162 (169)
T 4gpm_A           87 KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEE----VVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHTC----
T ss_pred             HHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCc
Confidence            9999999999999999999999999999999999999999999765   999999999988655    588999999998


Q ss_pred             CC
Q 027950          180 TK  181 (216)
Q Consensus       180 ~~  181 (216)
                      +.
T Consensus       163 e~  164 (169)
T 4gpm_A          163 EH  164 (169)
T ss_dssp             --
T ss_pred             CC
Confidence            74

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=7.1e-29  Score=189.40  Aligned_cols=180  Identities=17%  Similarity=0.195  Sum_probs=155.6

Q ss_pred             cccccccCCCCcccccCCCC-CCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCC-----CccCCCCchHHHHHHHc
Q 027950           23 MRFSFGRQSSLDPIRRSPVQ-DELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDV-----NSIDLDGRTALHIAACE   96 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~-----~~~~~~g~t~L~~a~~~   96 (216)
                      +++.....++.+.++.++.. +......+..|.||||+|+..|+.+++++|++.|+++     +..+..|.||||+|+..
T Consensus         6 ~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~   85 (232)
T 2rfa_A            6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN   85 (232)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHc
Confidence            34455567777888777766 5555566788999999999999999999999999876     56677899999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCC-------------CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCC
Q 027950           97 GHVEVVKLLLSKKANIDARDR-------------WGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPRE  160 (216)
Q Consensus        97 ~~~~~~~~Ll~~g~~~~~~~~-------------~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~  160 (216)
                      |+.+++++|++.|++++..+.             .|.||||+|+..|+.+++++|+++|+++|..   |.||||+|+..+
T Consensus        86 ~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~  165 (232)
T 2rfa_A           86 QNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQP  165 (232)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCS
T ss_pred             CCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence            999999999999999998866             7999999999999999999999999998765   999999999998


Q ss_pred             CcccccchhhHHHHhhcCC---------CCCCCcchHHH------HHHHHHHHcCCC
Q 027950          161 VPEYELNPLELQVRKADGI---------TKAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       161 ~~~~~~~~~~~l~~~g~~~---------~~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      ..++...++++++..|++.         +..+.||++.|      .++++|++.|..
T Consensus       166 ~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          166 NKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             CHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            8877666779999999854         47899999998      688888888764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=3.3e-28  Score=181.71  Aligned_cols=179  Identities=13%  Similarity=0.187  Sum_probs=150.9

Q ss_pred             ccccccccCCCCcccccCCCCCC-CCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      ..++.....++.+.++.++..+. .....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus         7 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~   86 (201)
T 3hra_A            7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTE   86 (201)
T ss_dssp             THHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             cHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            44556666788888877777666 44455778999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCC---CCCchhcccCCCC-cccccchhhHHHH
Q 027950          101 VVKLLL-SKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG-AKVPKT---KRTPMTVANPREV-PEYELNPLELQVR  174 (216)
Q Consensus       101 ~~~~Ll-~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g-~~~~~~---g~t~l~~a~~~~~-~~~~~~~~~~l~~  174 (216)
                      ++++|+ ..+.+++..+..|.||||+|+..|+.+++++|+++| ++++..   |.||||+|+..+. .....++++++++
T Consensus        87 ~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~  166 (201)
T 3hra_A           87 ILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME  166 (201)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH
T ss_pred             HHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH
Confidence            999999 568899999999999999999999999999999999 887654   9999999987654 2222456899999


Q ss_pred             hhcCCC---CCCCcchHHH------HHHHHHHHcC
Q 027950          175 KADGIT---KAWPVPLIFV------HYVILLRQAG  200 (216)
Q Consensus       175 ~g~~~~---~~~~~~l~~~------~~~~~l~~~g  200 (216)
                      .|++++   ..+.||++.|      .++++|++.|
T Consensus       167 ~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          167 NGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            999986   4567888887      5666666654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.6e-28  Score=191.06  Aligned_cols=152  Identities=22%  Similarity=0.236  Sum_probs=134.3

Q ss_pred             ccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCC
Q 027950           35 PIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA  114 (216)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~  114 (216)
                      .+..++..+......+.+|.||||+|+..|+.+++++|++.|++++..+..|.||+|+|+..++.+++++|++.|++++.
T Consensus        68 ~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~  147 (269)
T 4b93_B           68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK  147 (269)
T ss_dssp             -------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCC
Confidence            45556666666666788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchH
Q 027950          115 RDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLI  188 (216)
Q Consensus       115 ~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~  188 (216)
                      +|..|+||||+|+..|+.+++++|+++|+++|..   |.||||+|+..+..+    ++++|+..|++++   ..+.||++
T Consensus       148 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~----~v~~Ll~~Gad~~~~d~~G~TpL~  223 (269)
T 4b93_B          148 KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF----VVELLLLHGASVQVLNKRQRTAVD  223 (269)
T ss_dssp             CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHHTTCCSCCCCTTSCCSGG
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHH
Confidence            9999999999999999999999999999999765   999999999988655    5889999999986   67889998


Q ss_pred             HH
Q 027950          189 FV  190 (216)
Q Consensus       189 ~~  190 (216)
                      .|
T Consensus       224 ~A  225 (269)
T 4b93_B          224 CA  225 (269)
T ss_dssp             GS
T ss_pred             HH
Confidence            87

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=1.9e-28  Score=191.76  Aligned_cols=179  Identities=22%  Similarity=0.174  Sum_probs=151.7

Q ss_pred             cccccccccCCCCcccccCCCCCCC---CCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcC
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQDEL---TVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEG   97 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~   97 (216)
                      ..+++.....+..+.++.++..+..   ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~   89 (282)
T 1oy3_D           10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVR   89 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTT
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            3445555667777777766554433   3455678999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCC-----------------------------------------------CCCCCCCCCCHHHHHHHcC
Q 027950           98 HVEVVKLLLSKKAN-----------------------------------------------IDARDRWGSTAAADAKYYG  130 (216)
Q Consensus        98 ~~~~~~~Ll~~g~~-----------------------------------------------~~~~~~~g~t~L~~a~~~g  130 (216)
                      +.+++++|++.|++                                               ++..+..|.||||+|+..|
T Consensus        90 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g  169 (282)
T 1oy3_D           90 AHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHK  169 (282)
T ss_dssp             CHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTT
T ss_pred             CcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcC
Confidence            99999999998765                                               6778889999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCC----CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHH
Q 027950          131 NVEVYNILKARGAKVPKT----KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLR  197 (216)
Q Consensus       131 ~~~~~~~Ll~~g~~~~~~----g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~  197 (216)
                      +.+++++|+++|++++..    |.||||+|+..+..+    ++++|+..|++++   ..+.||++.|      .++++|+
T Consensus       170 ~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll  245 (282)
T 1oy3_D          170 DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS----VLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR  245 (282)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHH----HHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHH
Confidence            999999999999998653    899999999888654    5889999999986   4578999998      7899999


Q ss_pred             HcCCCC
Q 027950          198 QAGSFN  203 (216)
Q Consensus       198 ~~g~~~  203 (216)
                      +.|+..
T Consensus       246 ~~ga~~  251 (282)
T 1oy3_D          246 AHGAPE  251 (282)
T ss_dssp             HTTCCC
T ss_pred             HcCCCc
Confidence            999863

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=9.7e-28  Score=181.92  Aligned_cols=178  Identities=19%  Similarity=0.125  Sum_probs=132.1

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCC-CCCccCCCCchHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGI-DVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      .+++.+...+..+.++.++..+......+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+
T Consensus        27 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  106 (223)
T 2f8y_A           27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG  106 (223)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             chHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHH
Confidence            34444555677777776666665555666777888888888888888888887765 67777777888888888888888


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhc
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKAD  177 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~  177 (216)
                      ++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    +++++++.|+
T Consensus       107 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga  182 (223)
T 2f8y_A          107 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE----TAKVLLDHFA  182 (223)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTC
T ss_pred             HHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHH----HHHHHHHcCC
Confidence            888888888888888888888888888888888888888888877654   788888887766443    4677777777


Q ss_pred             CCC---CCCCcchHHH------HHHHHHHHcCCCC
Q 027950          178 GIT---KAWPVPLIFV------HYVILLRQAGSFN  203 (216)
Q Consensus       178 ~~~---~~~~~~l~~~------~~~~~l~~~g~~~  203 (216)
                      +++   ..+.||++.|      .++++|++.|+..
T Consensus       183 ~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~  217 (223)
T 2f8y_A          183 NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR  217 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred             CCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence            765   4567777777      5777777777753

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=6.9e-28  Score=184.57  Aligned_cols=178  Identities=19%  Similarity=0.149  Sum_probs=152.3

Q ss_pred             cccccccccCCCCcccccCCCCCC----CCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHc
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQDE----LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACE   96 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~   96 (216)
                      ..+++.....+..+.++.++....    .....+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..
T Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   88 (236)
T 1ikn_D            9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ   88 (236)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH
T ss_pred             CchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            455566666778887777766554    3455677899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCCC------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCchhcccCCCCccccc
Q 027950           97 GHVEVVKLLLSKKAN------IDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK----TKRTPMTVANPREVPEYEL  166 (216)
Q Consensus        97 ~~~~~~~~Ll~~g~~------~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~----~g~t~l~~a~~~~~~~~~~  166 (216)
                      |+.+++++|++.|++      ++..+..|.||||+|+..|+.+++++|+++|++++.    .|.||||+|+..+..+   
T Consensus        89 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~---  165 (236)
T 1ikn_D           89 GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD---  165 (236)
T ss_dssp             TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH---
T ss_pred             CCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH---
Confidence            999999999999876      466788899999999999999999999999999865    4899999999988654   


Q ss_pred             chhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          167 NPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       167 ~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                       ++++|+..|++++   ..+.||++.|      .++++|++.|+.
T Consensus       166 -~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~  209 (236)
T 1ikn_D          166 -LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  209 (236)
T ss_dssp             -HHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             -HHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchh
Confidence             5889999999986   5678999888      789999999985

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=1.3e-27  Score=185.14  Aligned_cols=168  Identities=18%  Similarity=0.139  Sum_probs=136.2

Q ss_pred             CCcccccCCCCCCCCCC-CCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCC
Q 027950           32 SLDPIRRSPVQDELTVP-ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA  110 (216)
Q Consensus        32 ~~~~~~~~~~~~~~~~~-~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~  110 (216)
                      ..+.++.++..+..... .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|+
T Consensus        35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  114 (253)
T 1yyh_A           35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA  114 (253)
T ss_dssp             -----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            67777777766655443 47889999999999999999999999999999999999999999999999999999999986


Q ss_pred             -CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCC
Q 027950          111 -NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAW  183 (216)
Q Consensus       111 -~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~  183 (216)
                       +++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    ++++|++.|++++   ..+
T Consensus       115 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g  190 (253)
T 1yyh_A          115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD----AAVVLLKNGANKDMQNNRE  190 (253)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTS
T ss_pred             CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCC
Confidence             89999999999999999999999999999999998755   999999999887544    5788999999886   567


Q ss_pred             CcchHHH------HHHHHHHHcCCCC
Q 027950          184 PVPLIFV------HYVILLRQAGSFN  203 (216)
Q Consensus       184 ~~~l~~~------~~~~~l~~~g~~~  203 (216)
                      .||++.|      .++++|++.|+..
T Consensus       191 ~tpL~~A~~~~~~~~v~~Ll~~ga~~  216 (253)
T 1yyh_A          191 ETPLFLAAREGSYETAKVLLDHFANR  216 (253)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCc
Confidence            8999888      6889999998763

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=7.8e-28  Score=183.38  Aligned_cols=148  Identities=28%  Similarity=0.295  Sum_probs=71.5

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  129 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~  129 (216)
                      +..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus        37 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  116 (231)
T 3aji_A           37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK  116 (231)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            34445555555555555555555555555544444455555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHH
Q 027950          130 GNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLR  197 (216)
Q Consensus       130 g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~  197 (216)
                      |+.+++++|+++|++++..   |.||||+|+..+..+    ++++++..|++++   ..+.||++.|      .++++|+
T Consensus       117 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  192 (231)
T 3aji_A          117 NRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK----MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV  192 (231)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH----HHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            5555555555555544332   445555554444222    2444444444443   2344444444      3444444


Q ss_pred             HcCC
Q 027950          198 QAGS  201 (216)
Q Consensus       198 ~~g~  201 (216)
                      +.|+
T Consensus       193 ~~ga  196 (231)
T 3aji_A          193 TQGA  196 (231)
T ss_dssp             HTTC
T ss_pred             HCCC
Confidence            4444

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=5.3e-27  Score=171.02  Aligned_cols=149  Identities=29%  Similarity=0.387  Sum_probs=129.5

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 027950           48 PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  127 (216)
Q Consensus        48 ~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~  127 (216)
                      .....+.++|++|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+
T Consensus         9 ~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E            9 HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             ----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            34556889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHH
Q 027950          128 YYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVIL  195 (216)
Q Consensus       128 ~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~  195 (216)
                      ..|+.+++++|+++|++++..   |.||||+|+..+..+    +++++++.|++++   ..+.||++.|      .++++
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~  164 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE----IVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI  164 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHH
Confidence            999999999999999998765   999999999888554    5888999999875   5677888877      45666


Q ss_pred             HHHcC
Q 027950          196 LRQAG  200 (216)
Q Consensus       196 l~~~g  200 (216)
                      |++.|
T Consensus       165 L~~~G  169 (169)
T 2y1l_E          165 LQKLN  169 (169)
T ss_dssp             HHTC-
T ss_pred             HHHcC
Confidence            65543

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=6.6e-27  Score=177.31  Aligned_cols=169  Identities=18%  Similarity=0.140  Sum_probs=146.9

Q ss_pred             CCCcccccCCCCCCCCCC-CCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCC
Q 027950           31 SSLDPIRRSPVQDELTVP-ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK  109 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~-~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g  109 (216)
                      ++.+.++.++..+..... .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~   81 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR   81 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred             CcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            455666666666554444 3788999999999999999999999999999999999999999999999999999999997


Q ss_pred             C-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CC
Q 027950          110 A-NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KA  182 (216)
Q Consensus       110 ~-~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~  182 (216)
                      . +++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    +++++++.|++++   ..
T Consensus        82 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~  157 (223)
T 2f8y_A           82 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD----AAVVLLKNGANKDMQNNR  157 (223)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTT
T ss_pred             CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCC
Confidence            6 89999999999999999999999999999999998754   999999999888654    5888999999886   56


Q ss_pred             CCcchHHH------HHHHHHHHcCCCC
Q 027950          183 WPVPLIFV------HYVILLRQAGSFN  203 (216)
Q Consensus       183 ~~~~l~~~------~~~~~l~~~g~~~  203 (216)
                      +.||++.|      .++++|++.|+..
T Consensus       158 g~t~L~~A~~~~~~~~v~~Ll~~ga~~  184 (223)
T 2f8y_A          158 EETPLFLAAREGSYETAKVLLDHFANR  184 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            78999998      6889999998853

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.5e-27  Score=177.21  Aligned_cols=149  Identities=19%  Similarity=0.220  Sum_probs=132.5

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 027950           48 PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  127 (216)
Q Consensus        48 ~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~  127 (216)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            34677999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHH
Q 027950          128 YYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVIL  195 (216)
Q Consensus       128 ~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~  195 (216)
                      ..|+.+++++|+++|++++..   |.||||+|+..+..+    ++++++..|++++   ..+.||++.|      .++++
T Consensus       110 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~  185 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE----IVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI  185 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHH
Confidence            999999999999999998665   999999999887554    5888999999986   5677888877      46666


Q ss_pred             HHHcC
Q 027950          196 LRQAG  200 (216)
Q Consensus       196 l~~~g  200 (216)
                      |++.|
T Consensus       186 Ll~~~  190 (192)
T 2rfm_A          186 FTEVR  190 (192)
T ss_dssp             HHHHH
T ss_pred             HHhcc
Confidence            65543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=1.6e-27  Score=181.64  Aligned_cols=177  Identities=24%  Similarity=0.213  Sum_probs=155.0

Q ss_pred             cccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHH
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      ..++......+..+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+
T Consensus        41 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  120 (231)
T 3aji_A           41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE  120 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            34455556678888888877777666677888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhc
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKAD  177 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~  177 (216)
                      ++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    +++++++.|+
T Consensus       121 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga  196 (231)
T 3aji_A          121 IAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE----EAKFLVTQGA  196 (231)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHH----HHHHHHHCCC
Confidence            999999999999999999999999999999999999999999999765   999999999888654    5889999999


Q ss_pred             CCC---CCCCcchHHH------HHHHHHHHcCC
Q 027950          178 GIT---KAWPVPLIFV------HYVILLRQAGS  201 (216)
Q Consensus       178 ~~~---~~~~~~l~~~------~~~~~l~~~g~  201 (216)
                      +++   ..+.||++.|      .++++|.+.|+
T Consensus       197 ~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a  229 (231)
T 3aji_A          197 SIYIENKEEKTPLQVAKGGLGLILKRLAEGEEA  229 (231)
T ss_dssp             CSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHhhHHHHHHHHHccccc
Confidence            986   5678888887      55666666553

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.95  E-value=5.9e-27  Score=170.21  Aligned_cols=145  Identities=17%  Similarity=0.176  Sum_probs=119.6

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 027950           52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  131 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~  131 (216)
                      .|.||||+|+..|+.++++.|++.+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            46788999999999999999998888888888888999999999999999999999999998888888999999999999


Q ss_pred             HHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHc
Q 027950          132 VEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQA  199 (216)
Q Consensus       132 ~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~  199 (216)
                      .+++++|+++|++++..   |.||||+|+..+..+    ++++++..|++++   ..+.||++.|      .++++|++.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK----CVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            99999999988888654   889999988877544    4778888888875   4567777777      455555554


Q ss_pred             C
Q 027950          200 G  200 (216)
Q Consensus       200 g  200 (216)
                      +
T Consensus       158 ~  158 (167)
T 3v31_A          158 L  158 (167)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=8.9e-27  Score=168.27  Aligned_cols=145  Identities=25%  Similarity=0.289  Sum_probs=122.0

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 027950           52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  131 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~  131 (216)
                      ...+|||+|+..|+.+++++|+++|++++..+..|.||||+|+. |+.+++++|++.|++++..+..|+||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            35689999999999999999999999888888889999999888 99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCC----CCCCCcchHHH------HHHHHHHH
Q 027950          132 VEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGI----TKAWPVPLIFV------HYVILLRQ  198 (216)
Q Consensus       132 ~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~----~~~~~~~l~~~------~~~~~l~~  198 (216)
                      .+++++|+++|++++..   |.||||+|+..+..+    +++++++.|++.    +..+.||++.|      .++++|++
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR----VVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            99999999999888654   889999998877544    577888888763    35677888887      67788888


Q ss_pred             cCC
Q 027950          199 AGS  201 (216)
Q Consensus       199 ~g~  201 (216)
                      .|+
T Consensus       159 ~GA  161 (162)
T 1ihb_A          159 NGA  161 (162)
T ss_dssp             TC-
T ss_pred             hCC
Confidence            775

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=1.2e-27  Score=174.59  Aligned_cols=155  Identities=21%  Similarity=0.256  Sum_probs=105.9

Q ss_pred             ccccccCCCCcccccCCCCCCC-CCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHH
Q 027950           24 RFSFGRQSSLDPIRRSPVQDEL-TVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  102 (216)
                      ++.+...++.+.++.++..+.. ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus         6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   85 (172)
T 3v30_A            6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIV   85 (172)
T ss_dssp             HHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHH
Confidence            3444455666666665555544 333455677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCC
Q 027950          103 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGI  179 (216)
Q Consensus       103 ~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~  179 (216)
                      ++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++..   |.|||++|+..+..+    +++++++.+++.
T Consensus        86 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~----~~~~L~~~~~~~  161 (172)
T 3v30_A           86 GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRK----VQQVIENHILKL  161 (172)
T ss_dssp             HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHH----HHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777776544   777777777666444    356666666655


Q ss_pred             CCC
Q 027950          180 TKA  182 (216)
Q Consensus       180 ~~~  182 (216)
                      ...
T Consensus       162 ~~~  164 (172)
T 3v30_A          162 FQS  164 (172)
T ss_dssp             SCC
T ss_pred             hcc
Confidence            433

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=2.9e-27  Score=183.13  Aligned_cols=174  Identities=19%  Similarity=0.128  Sum_probs=151.5

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCC-CCCccCCCCchHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGI-DVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      .+++.....+..+.++.++..+......+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..++.+
T Consensus        59 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  138 (253)
T 1yyh_A           59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG  138 (253)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSS
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHH
Confidence            44455566788888888877777777778889999999999999999999999987 89999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhc
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKAD  177 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~  177 (216)
                      ++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    ++++|++.|+
T Consensus       139 ~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga  214 (253)
T 1yyh_A          139 MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE----TAKVLLDHFA  214 (253)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHTTC
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHH----HHHHHHHcCC
Confidence            999999999999999999999999999999999999999999999765   999999999887554    5889999999


Q ss_pred             CCC---CCCCcchHHH------HHHHHHHHc
Q 027950          178 GIT---KAWPVPLIFV------HYVILLRQA  199 (216)
Q Consensus       178 ~~~---~~~~~~l~~~------~~~~~l~~~  199 (216)
                      +++   ..+.||++.|      .++.++.+.
T Consensus       215 ~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~  245 (253)
T 1yyh_A          215 NRDITDHMDRLPRDIAQERMHHDIVRLLDLE  245 (253)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred             CccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            986   5678888887      455555443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=2.3e-26  Score=181.22  Aligned_cols=138  Identities=24%  Similarity=0.280  Sum_probs=75.7

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 027950           49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY  128 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~  128 (216)
                      .+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.
T Consensus        55 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~  134 (285)
T 3d9h_A           55 DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACV  134 (285)
T ss_dssp             SSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHH
T ss_pred             CCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            34455566666666666666666666665555555556666666666666666666666666666555556666666666


Q ss_pred             cCCHHHHHHHHHCCCCCCCC--CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          129 YGNVEVYNILKARGAKVPKT--KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       129 ~g~~~~~~~Ll~~g~~~~~~--g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      .|+.+++++|+++|++++..  |.||||+|+..+..+    ++++++..|++++   ..+.||++.|
T Consensus       135 ~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A  197 (285)
T 3d9h_A          135 SGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVE----CVNSLIAYGGNIDHKISHLGTPLYLA  197 (285)
T ss_dssp             HTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHTCHH----HHHHHHHTTCCTTCCBTTTBCHHHHH
T ss_pred             cCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            55555555555555554332  555555555444322    2444444444443   2334444444

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=1e-26  Score=178.02  Aligned_cols=178  Identities=20%  Similarity=0.148  Sum_probs=151.8

Q ss_pred             cccccccccCCCCcccccCCC----CCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHc
Q 027950           21 NNMRFSFGRQSSLDPIRRSPV----QDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACE   96 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~   96 (216)
                      .++++.....+..+.++.++.    .+......+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   89 (241)
T 1k1a_A           10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH   89 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            345555566777777666543    4445555677899999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----CCCCchhcccCCCCcccccch
Q 027950           97 GHVEVVKLLLSKKA----NIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK----TKRTPMTVANPREVPEYELNP  168 (216)
Q Consensus        97 ~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~----~g~t~l~~a~~~~~~~~~~~~  168 (216)
                      ++.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|+++|++++.    .|.||||+|+..+..+    +
T Consensus        90 ~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~----~  165 (241)
T 1k1a_A           90 RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS----M  165 (241)
T ss_dssp             TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----H
T ss_pred             CCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHH----H
Confidence            99999999999987    8888999999999999999999999999999999864    3999999999887554    5


Q ss_pred             hhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          169 LELQVRKADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       169 ~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      ++++++.|++++   ..+.||++.|      .++++|++.|+.
T Consensus       166 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  208 (241)
T 1k1a_A          166 VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD  208 (241)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Confidence            888899999986   5678999988      688899999885

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=7.2e-27  Score=178.68  Aligned_cols=177  Identities=21%  Similarity=0.224  Sum_probs=137.9

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      .++......+..+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus        13 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   92 (237)
T 3b7b_A           13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV   92 (237)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHH
Confidence            34444555667777776666666555667778888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhc
Q 027950          102 VKLLLSKK-ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKAD  177 (216)
Q Consensus       102 ~~~Ll~~g-~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~  177 (216)
                      +++|++.| .+++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    ++++++..|+
T Consensus        93 ~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~  168 (237)
T 3b7b_A           93 VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKC  168 (237)
T ss_dssp             HHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTC
T ss_pred             HHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCC
Confidence            88888887 788888888888888888888888888888888887654   888888888776544    4777888888


Q ss_pred             CCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          178 GIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       178 ~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      +++   ..+.||++.|      .++.+|++.|+.
T Consensus       169 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad  202 (237)
T 3b7b_A          169 DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD  202 (237)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             CCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC
Confidence            775   4567888877      677788877765

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=6.9e-27  Score=184.22  Aligned_cols=176  Identities=22%  Similarity=0.198  Sum_probs=152.4

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      .++......+..+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus        61 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~  140 (285)
T 3d9h_A           61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC  140 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHH
Confidence            34455566778888887777766666678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcC
Q 027950          102 VKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                      +++|++.|++++..+ .|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    +++++++.|++
T Consensus       141 v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~  215 (285)
T 3d9h_A          141 VNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA----CVKKLLESGAD  215 (285)
T ss_dssp             HHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHH----HHHHHHHTTCC
T ss_pred             HHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH----HHHHHHHCCCC
Confidence            999999999998654 4999999999999999999999999998765   999999999888654    57888888988


Q ss_pred             CC--CCCCcchHHH------HHHHHHHHcCCC
Q 027950          179 IT--KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       179 ~~--~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      ++  ..+.||++.|      .++++|++.|+.
T Consensus       216 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad  247 (285)
T 3d9h_A          216 VNQGKGQDSPLHAVVRTASEELACLLMDFGAD  247 (285)
T ss_dssp             TTCCBTTBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            76  4678999988      688999998875

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.6e-26  Score=167.61  Aligned_cols=134  Identities=26%  Similarity=0.364  Sum_probs=80.8

Q ss_pred             cccccCCCCcccccCCCCCCC-CCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHH
Q 027950           25 FSFGRQSSLDPIRRSPVQDEL-TVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVK  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~  103 (216)
                      +.....++.+.++.++..... ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++++
T Consensus        13 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   92 (165)
T 3twr_A           13 LEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE   92 (165)
T ss_dssp             HHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHH
Confidence            344445555555555443322 2223444556666666666666666666666666666666666666666666666666


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccC
Q 027950          104 LLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANP  158 (216)
Q Consensus       104 ~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~  158 (216)
                      +|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..   |.||+++|+.
T Consensus        93 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT
T ss_pred             HHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc
Confidence            666666666666666666666666666666666666666665443   6666666555

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=7.1e-28  Score=186.64  Aligned_cols=179  Identities=18%  Similarity=0.131  Sum_probs=143.1

Q ss_pred             ccccccCCCCcccccCCC----CCCCCCC----CCccchHHHHHHHHc---CCHHHHHHHHhCCCCCCcc----------
Q 027950           24 RFSFGRQSSLDPIRRSPV----QDELTVP----ENLDSTMQLLFMACS---GDVKGVEDLLNEGIDVNSI----------   82 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~t~L~~a~~~---g~~~~v~~Ll~~~~~~~~~----------   82 (216)
                      ++.+...++.+.++.+..    .+.....    .+..|.||||+|+..   |+.+++++|++.|++++..          
T Consensus         6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~   85 (256)
T 2etb_A            6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD   85 (256)
T ss_dssp             HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccccccc
Confidence            344445566654443322    3333333    578899999999999   9999999999998776532          


Q ss_pred             -CCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-------------CCCHHHHHHHcCCHHHHHHHHH---CCCCC
Q 027950           83 -DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW-------------GSTAAADAKYYGNVEVYNILKA---RGAKV  145 (216)
Q Consensus        83 -~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-------------g~t~L~~a~~~g~~~~~~~Ll~---~g~~~  145 (216)
                       +..|.||||+|+..|+.+++++|++.|++++..+..             |.||||+|+..|+.+++++|++   +|+++
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~  165 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL  165 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc
Confidence             367999999999999999999999999999999886             9999999999999999999999   99999


Q ss_pred             CCC---CCCchhcccC--CCCcc---cccchhhHHHHhhcCC----------CCCCCcchHHH------HHHHHHHHcCC
Q 027950          146 PKT---KRTPMTVANP--REVPE---YELNPLELQVRKADGI----------TKAWPVPLIFV------HYVILLRQAGS  201 (216)
Q Consensus       146 ~~~---g~t~l~~a~~--~~~~~---~~~~~~~~l~~~g~~~----------~~~~~~~l~~~------~~~~~l~~~g~  201 (216)
                      |..   |+||||+|+.  .+..+   +...++++|+..|+++          +..+.||++.|      .++++|++.|.
T Consensus       166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF  245 (256)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCC
Confidence            765   9999999987  44332   1223678899988777          46789999998      67888888775


Q ss_pred             C
Q 027950          202 F  202 (216)
Q Consensus       202 ~  202 (216)
                      .
T Consensus       246 ~  246 (256)
T 2etb_A          246 S  246 (256)
T ss_dssp             H
T ss_pred             C
Confidence            4

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=4.9e-27  Score=172.66  Aligned_cols=151  Identities=24%  Similarity=0.245  Sum_probs=84.2

Q ss_pred             ccccCCCCcccccCCCCCC-CCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHH
Q 027950           26 SFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKL  104 (216)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  104 (216)
                      .....++.+.++.++.... .....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++
T Consensus        11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~   90 (179)
T 3f6q_A           11 TQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQK   90 (179)
T ss_dssp             HHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            3334444444444444322 223334455566666666666666666666666666655566666666666666666666


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC
Q 027950          105 LLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT  180 (216)
Q Consensus       105 Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~  180 (216)
                      |++.|++++..|..|.||||+|+..|+.+++++|+++|++++..   |.||+++|+..+..    .+++++++.|++++
T Consensus        91 Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~----~~~~~L~~~g~~~~  165 (179)
T 3f6q_A           91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE----LLRERAEKMGQNLN  165 (179)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHH----HHHHHHHHTTCCCS
T ss_pred             HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHH----HHHHHHHHhhcCcc
Confidence            66666666666666666666666666666666666666665432   66666666544322    23455555555554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=3.7e-26  Score=167.92  Aligned_cols=152  Identities=20%  Similarity=0.155  Sum_probs=134.8

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 027950           51 LDSTMQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  129 (216)
Q Consensus        51 ~~~~t~L~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~  129 (216)
                      .++.++|+.|+..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH   82 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            4578899999999999999999998 677999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHH
Q 027950          130 GNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLR  197 (216)
Q Consensus       130 g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~  197 (216)
                      |+.+++++|+++|++++..   |.||||+|+..+..+    ++++++..|++++   ..+.||++.|      .++.+|+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~  158 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQ----VAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE  158 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999765   999999999888654    5889999999985   6788999887      6888999


Q ss_pred             HcCCCCCcc
Q 027950          198 QAGSFNQEL  206 (216)
Q Consensus       198 ~~g~~~~~~  206 (216)
                      +.|+.....
T Consensus       159 ~~g~~~~~~  167 (179)
T 3f6q_A          159 KMGQNLNRI  167 (179)
T ss_dssp             HTTCCCSCB
T ss_pred             HhhcCcccC
Confidence            999864433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.94  E-value=8.2e-27  Score=177.27  Aligned_cols=173  Identities=20%  Similarity=0.196  Sum_probs=126.2

Q ss_pred             ccccCCCCcccccCCCCCCCCC-CCCccchHHHHHHHHcCCHHHHHHHHhCC--CCCCc-cCCCCchHHHHHHHcCCHHH
Q 027950           26 SFGRQSSLDPIRRSPVQDELTV-PENLDSTMQLLFMACSGDVKGVEDLLNEG--IDVNS-IDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~--~~~~~-~~~~g~t~L~~a~~~~~~~~  101 (216)
                      .....++.+.++.++..+.... ..+..|.||||+|+..|+.+++++|+++|  .+++. .+..|.||||+|+..|+.++
T Consensus         8 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~   87 (228)
T 2dzn_A            8 QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV   87 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHH
Confidence            3344555565555544443333 25667888888888888888888888887  44444 66778888888888888888


Q ss_pred             HHHHHhCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhh
Q 027950          102 VKLLLSKK--ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKA  176 (216)
Q Consensus       102 ~~~Ll~~g--~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g  176 (216)
                      +++|++.|  ++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    ++++++..|
T Consensus        88 ~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g  163 (228)
T 2dzn_A           88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK----LIELLCGLG  163 (228)
T ss_dssp             HHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHTTT
T ss_pred             HHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH----HHHHHHhcC
Confidence            88888887  777888888888888888888888888888888887654   888888888776544    467777777


Q ss_pred             -cCCC---CCCCcchHHH------HHHHHHH-HcCCC
Q 027950          177 -DGIT---KAWPVPLIFV------HYVILLR-QAGSF  202 (216)
Q Consensus       177 -~~~~---~~~~~~l~~~------~~~~~l~-~~g~~  202 (216)
                       ++++   ..+.||++.|      .++++|+ +.|+.
T Consensus       164 ~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~  200 (228)
T 2dzn_A          164 KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE  200 (228)
T ss_dssp             CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC
T ss_pred             cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence             6554   5677788777      5677777 66764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=1.2e-26  Score=168.32  Aligned_cols=149  Identities=32%  Similarity=0.362  Sum_probs=131.8

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 027950           49 ENLDSTMQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  127 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~  127 (216)
                      .+.++.++||.|+..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            366789999999999999999999984 5677778888999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH-----HHHHHH
Q 027950          128 YYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV-----HYVILL  196 (216)
Q Consensus       128 ~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~-----~~~~~l  196 (216)
                      ..|+.+++++|+++|++++..   |.||||+|+..+..+    +++++++.|++++   ..+.||++.|     .++++|
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~i~~~L  159 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE----ICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLL  159 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCTGGGSCTTCHHHHHHH
T ss_pred             HcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCChhHhHhcCChHHHHHH
Confidence            999999999999999999765   999999999988655    5888999999886   5788999887     688888


Q ss_pred             HHcCC
Q 027950          197 RQAGS  201 (216)
Q Consensus       197 ~~~g~  201 (216)
                      ++.|+
T Consensus       160 ~~~gA  164 (165)
T 3twr_A          160 RGDAA  164 (165)
T ss_dssp             HTC--
T ss_pred             hhccc
Confidence            88775

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=2.5e-27  Score=171.15  Aligned_cols=152  Identities=21%  Similarity=0.187  Sum_probs=133.8

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      ..++.....++.+.++.++..+......+..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+.++
T Consensus         7 ~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   85 (162)
T 1ihb_A            7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   85 (162)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            34455566778888888777776666778889999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCC---CCCCchhcccCCCCcccccchhhHHHHhhc
Q 027950          102 VKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK-VPK---TKRTPMTVANPREVPEYELNPLELQVRKAD  177 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~-~~~---~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~  177 (216)
                      +++|++.|++++..+..|+||||+|+..|+.+++++|+++|++ ++.   .|.|||++|+..+..+    ++++++++|+
T Consensus        86 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~GA  161 (162)
T 1ihb_A           86 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE----VVSLMQANGA  161 (162)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTC-
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH----HHHHHHHhCC
Confidence            9999999999999999999999999999999999999999997 344   3999999999988655    5788888887


Q ss_pred             C
Q 027950          178 G  178 (216)
Q Consensus       178 ~  178 (216)
                      +
T Consensus       162 d  162 (162)
T 1ihb_A          162 G  162 (162)
T ss_dssp             -
T ss_pred             C
Confidence            4

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=4.6e-27  Score=165.41  Aligned_cols=127  Identities=23%  Similarity=0.268  Sum_probs=117.2

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCCHHHH
Q 027950           47 VPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW-GSTAAAD  125 (216)
Q Consensus        47 ~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~  125 (216)
                      ...+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. ++.+++++|++.|++++.++.. |+||||+
T Consensus         6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~   84 (136)
T 1d9s_A            6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHD   84 (136)
T ss_dssp             SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHH
T ss_pred             cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHH
Confidence            3446779999999999999999999999999999999999999999999 9999999999999999999999 9999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcC
Q 027950          126 AKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       126 a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                      |+..|+.+++++|+++|++++..   |.|||++|+..+..+    ++++|++.|++
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~----~~~~Ll~~Gad  136 (136)
T 1d9s_A           85 AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRD----IARYLHAATGD  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHH----HHHHHHHHHCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCC
Confidence            99999999999999999998765   999999999877544    57888888875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=2.5e-26  Score=167.63  Aligned_cols=146  Identities=19%  Similarity=0.212  Sum_probs=130.8

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhCCCC-CCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 027950           53 STMQLLFMACSGDVKGVEDLLNEGID-VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  131 (216)
Q Consensus        53 ~~t~L~~a~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~  131 (216)
                      +.+|||+|+..|+.+.++.|++.+.+ ++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            56899999999999999999999876 78889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHc
Q 027950          132 VEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQA  199 (216)
Q Consensus       132 ~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~  199 (216)
                      .+++++|+++|++++..   |.||||+|+..+..+    +++++++.|++++   ..+.||++.|      .++++|++.
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK----CVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            99999999999999764   999999999887554    5788999999986   5578899888      577778777


Q ss_pred             CCC
Q 027950          200 GSF  202 (216)
Q Consensus       200 g~~  202 (216)
                      |+.
T Consensus       158 ~~~  160 (172)
T 3v30_A          158 ILK  160 (172)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=1.9e-27  Score=185.97  Aligned_cols=185  Identities=16%  Similarity=0.152  Sum_probs=148.8

Q ss_pred             cccccccccCCCCcccccCCCC---CCCCC-----CCCccchHHHHHHHHc---CCHHHHHHHHhCCCCC-------Cc-
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQ---DELTV-----PENLDSTMQLLFMACS---GDVKGVEDLLNEGIDV-------NS-   81 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~t~L~~a~~~---g~~~~v~~Ll~~~~~~-------~~-   81 (216)
                      ...++.+...++.+.++.++..   ....+     ..+..|.||||+|+..   |+.+++++|++.|+++       +. 
T Consensus        14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~   93 (273)
T 2pnn_A           14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS   93 (273)
T ss_dssp             HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCC
T ss_pred             chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcc
Confidence            3455666778888877766541   12112     3467899999999987   9999999999987542       22 


Q ss_pred             ---cCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCC--------------CCCCHHHHHHHcCCHHHHHHHHH---C
Q 027950           82 ---IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDR--------------WGSTAAADAKYYGNVEVYNILKA---R  141 (216)
Q Consensus        82 ---~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~--------------~g~t~L~~a~~~g~~~~~~~Ll~---~  141 (216)
                         .+..|.||||+|+..|+.+++++|++.|++++..+.              .|.||||+|+..|+.+++++|++   +
T Consensus        94 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  173 (273)
T 2pnn_A           94 YTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQ  173 (273)
T ss_dssp             CCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             cccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccC
Confidence               466899999999999999999999999999999987              79999999999999999999999   9


Q ss_pred             CCCCCCC---CCCchhcccCCCC-----cccccchhhHHHHhhcCC----------CCCCCcchHHH------HHHHHHH
Q 027950          142 GAKVPKT---KRTPMTVANPREV-----PEYELNPLELQVRKADGI----------TKAWPVPLIFV------HYVILLR  197 (216)
Q Consensus       142 g~~~~~~---g~t~l~~a~~~~~-----~~~~~~~~~~l~~~g~~~----------~~~~~~~l~~~------~~~~~l~  197 (216)
                      |++++..   |+||||+|+..+.     .++..+++++|+..|+++          +..+.||++.|      .++++|+
T Consensus       174 gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll  253 (273)
T 2pnn_A          174 PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL  253 (273)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHH
Confidence            9999765   9999999987543     222245688899988875          56789999998      7899999


Q ss_pred             HcCCCCCc
Q 027950          198 QAGSFNQE  205 (216)
Q Consensus       198 ~~g~~~~~  205 (216)
                      +.|+....
T Consensus       254 ~~ga~dp~  261 (273)
T 2pnn_A          254 QREIHEPE  261 (273)
T ss_dssp             HHHTC---
T ss_pred             HCCCCCch
Confidence            99995443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=2.3e-26  Score=184.89  Aligned_cols=125  Identities=27%  Similarity=0.310  Sum_probs=99.7

Q ss_pred             ccccccccCCCCcccccCCCCCCC-CCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDEL-TVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      ..++...+.++.+.++.++..... ....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus        26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~  105 (351)
T 3utm_A           26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYE  105 (351)
T ss_dssp             HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHH
Confidence            445666667777777766655333 3344667888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP  146 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~  146 (216)
                      ++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++
T Consensus       106 iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  151 (351)
T 3utm_A          106 VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT  151 (351)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            8888888888888888888888888888888888888888877654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.94  E-value=1.8e-27  Score=184.70  Aligned_cols=181  Identities=17%  Similarity=0.157  Sum_probs=145.4

Q ss_pred             ccccccccCCCCcccccCCC----CCCCCCCCC----ccchHHHHHHH---HcCCHHHHHHHHhCCCC-----------C
Q 027950           22 NMRFSFGRQSSLDPIRRSPV----QDELTVPEN----LDSTMQLLFMA---CSGDVKGVEDLLNEGID-----------V   79 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~t~L~~a~---~~g~~~~v~~Ll~~~~~-----------~   79 (216)
                      ..++.+.+.++.+.++.++.    .+......+    ..|.||||+|+   ..|+.+++++|++.|++           +
T Consensus         7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~   86 (260)
T 3jxi_A            7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPF   86 (260)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCB
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccc
Confidence            34555666777776655544    333333222    56999999999   67999999999998743           3


Q ss_pred             CccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCC--------------CCCCCHHHHHHHcCCHHHHHHHHH---CC
Q 027950           80 NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD--------------RWGSTAAADAKYYGNVEVYNILKA---RG  142 (216)
Q Consensus        80 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~--------------~~g~t~L~~a~~~g~~~~~~~Ll~---~g  142 (216)
                      +..+..|.||||+|+..|+.+++++|++.|++++..+              ..|+||||+|+..|+.+++++|++   +|
T Consensus        87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           87 RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             CCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            4445589999999999999999999999999999998              689999999999999999999999   99


Q ss_pred             CCCCCC---CCCchhcccCCCC-----cccccchhhHHHHhhcCC----------CCCCCcchHHH------HHHHHHHH
Q 027950          143 AKVPKT---KRTPMTVANPREV-----PEYELNPLELQVRKADGI----------TKAWPVPLIFV------HYVILLRQ  198 (216)
Q Consensus       143 ~~~~~~---g~t~l~~a~~~~~-----~~~~~~~~~~l~~~g~~~----------~~~~~~~l~~~------~~~~~l~~  198 (216)
                      +++|..   |+||||+|+..+.     .++..+++++|+..|+++          +..+.||++.|      .++++|++
T Consensus       167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~  246 (260)
T 3jxi_A          167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR  246 (260)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999765   9999999985433     333356788999999865          46899999998      68889988


Q ss_pred             cCCC
Q 027950          199 AGSF  202 (216)
Q Consensus       199 ~g~~  202 (216)
                      .|..
T Consensus       247 ~g~~  250 (260)
T 3jxi_A          247 REIA  250 (260)
T ss_dssp             HHHH
T ss_pred             hCCC
Confidence            8865

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=6.4e-27  Score=190.08  Aligned_cols=117  Identities=20%  Similarity=0.169  Sum_probs=104.1

Q ss_pred             cCCCCchHHHHHHHcC--CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-----CCCC---CCC
Q 027950           82 IDLDGRTALHIAACEG--HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK-----VPKT---KRT  151 (216)
Q Consensus        82 ~~~~g~t~L~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~-----~~~~---g~t  151 (216)
                      .+..|.||||+|+..|  +.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++     +|..   |.|
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t  213 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS  213 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc
Confidence            6678999999999999  99999999999999999999999999999999999999999999988     7654   999


Q ss_pred             chhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          152 PMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       152 ~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      |||+|+..+..+    ++++|++.|++++   ..+.||++.|      .++++|++.|..
T Consensus       214 ~L~~A~~~g~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  269 (364)
T 3ljn_A          214 HLHWAILINWED----VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV  269 (364)
T ss_dssp             TTHHHHTTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH
T ss_pred             HHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc
Confidence            999999988655    5889999999986   5678999988      688899988754

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=1.1e-26  Score=183.63  Aligned_cols=89  Identities=22%  Similarity=0.276  Sum_probs=49.5

Q ss_pred             ccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHh
Q 027950           28 GRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLS  107 (216)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  107 (216)
                      ...|+.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus        48 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  127 (299)
T 1s70_B           48 CSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS  127 (299)
T ss_dssp             HHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            33455555555444444434444555566666666666666666666555555555555666666666666666666665


Q ss_pred             CCCCCCCCC
Q 027950          108 KKANIDARD  116 (216)
Q Consensus       108 ~g~~~~~~~  116 (216)
                      +|++++..+
T Consensus       128 ~g~~~~~~~  136 (299)
T 1s70_B          128 QGAHVGAVN  136 (299)
T ss_dssp             TTCCTTCCC
T ss_pred             CCCCCCCcC
Confidence            555555443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=8.5e-27  Score=169.90  Aligned_cols=151  Identities=27%  Similarity=0.353  Sum_probs=133.7

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      ...+.+...++.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus        16 ~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   95 (169)
T 2y1l_E           16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEI   95 (169)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHH
Confidence            44555666888888888877776666678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhh
Q 027950          102 VKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKA  176 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g  176 (216)
                      +++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||+++|+..+..+    +++++++.|
T Consensus        96 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~L~~~G  169 (169)
T 2y1l_E           96 VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNED----LAEILQKLN  169 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHTC-
T ss_pred             HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHH----HHHHHHHcC
Confidence            99999999999999999999999999999999999999999998654   999999999888655    356665543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=9.1e-26  Score=161.74  Aligned_cols=133  Identities=26%  Similarity=0.291  Sum_probs=103.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Q 027950           53 STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNV  132 (216)
Q Consensus        53 ~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~  132 (216)
                      ..++|+.|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            4678888888888888888888887765 466788888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          133 EVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       133 ~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      +++++|+++|++++..   |.||||+|+..+..+    +++++++.|++++   ..+.||++.|
T Consensus        81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~t~l~~A  140 (153)
T 1awc_B           81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE----VVELLIKYGADVHTQSKFCKTAFDIS  140 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHH
Confidence            8888888888887654   888888888776544    4677778887775   3455666555

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=4.1e-26  Score=160.53  Aligned_cols=126  Identities=29%  Similarity=0.364  Sum_probs=112.3

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 027950           47 VPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  126 (216)
Q Consensus        47 ~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a  126 (216)
                      ......+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..|..|.||||+|
T Consensus         8 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A            8 HHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             ----CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CcccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhh
Q 027950          127 KYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKA  176 (216)
Q Consensus       127 ~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g  176 (216)
                      +..|+.+++++|+++|++++..   |.|||++|+..+..+    +++++++.|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~----~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNED----LAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHH----HHHHHHHcC
Confidence            9999999999999999998654   999999999888655    356666543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=8.9e-27  Score=182.28  Aligned_cols=160  Identities=25%  Similarity=0.240  Sum_probs=129.8

Q ss_pred             cccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHH
Q 027950           23 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV  102 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  102 (216)
                      ++..+...+..+.++.++..+......+..|.||+++|+..++.++++.|++.|++++.+|..|.||||+|+..|+.+++
T Consensus        89 pLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v  168 (269)
T 4b93_B           89 PLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELV  168 (269)
T ss_dssp             HHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGH
T ss_pred             HHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            34445567788888887777777777788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCC
Q 027950          103 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGI  179 (216)
Q Consensus       103 ~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~  179 (216)
                      ++|++.|++++..+..|+||||+|+..|+.+++++|+++|+++|..   |+||||+|+..+.   ..++++.+...++..
T Consensus       169 ~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~---i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          169 ALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK---IMELLQVVPSCVASL  245 (269)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH---HHHHTTC--------
T ss_pred             HHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc---HHHHHHHHHHhchhh
Confidence            9999999999999999999999999999999999999999999765   9999999987653   233455555556555


Q ss_pred             CCCCCc
Q 027950          180 TKAWPV  185 (216)
Q Consensus       180 ~~~~~~  185 (216)
                      +..+.|
T Consensus       246 ~~~~~t  251 (269)
T 4b93_B          246 DDVAET  251 (269)
T ss_dssp             ------
T ss_pred             hhccCC
Confidence            543333

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.94  E-value=2e-26  Score=175.06  Aligned_cols=165  Identities=16%  Similarity=0.105  Sum_probs=141.6

Q ss_pred             ccccccccCCCCcccccCCCCC--CCCCC-CCccchHHHHHHHHcCCHHHHHHHHhCC--CCCCccCCCCchHHHHHHHc
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQD--ELTVP-ENLDSTMQLLFMACSGDVKGVEDLLNEG--IDVNSIDLDGRTALHIAACE   96 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~t~L~~a~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~a~~~   96 (216)
                      .++......+..+.++.++..+  ..... .+..|.||||+|+..|+.+++++|+++|  ++++..+..|.||||+|+..
T Consensus        38 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~  117 (228)
T 2dzn_A           38 IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK  117 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHc
Confidence            4445555577777777766655  22222 5678999999999999999999999998  88889999999999999999


Q ss_pred             CCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCC---CCCchhcccCCCCcccccchhhHH
Q 027950           97 GHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG-AKVPKT---KRTPMTVANPREVPEYELNPLELQ  172 (216)
Q Consensus        97 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g-~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l  172 (216)
                      ++.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++| ++++..   |.||||+|+..+..+    +++++
T Consensus       118 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~----~v~~L  193 (228)
T 2dzn_A          118 KWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD----AAVLL  193 (228)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHH----HHHHH
T ss_pred             CCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHH----HHHHH
Confidence            9999999999999999999999999999999999999999999999 888654   999999999988655    47888


Q ss_pred             H-HhhcCCC---CCCCcchHHH
Q 027950          173 V-RKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       173 ~-~~g~~~~---~~~~~~l~~~  190 (216)
                      + ..|++++   ..+.||++.|
T Consensus       194 l~~~ga~~~~~~~~g~t~l~~A  215 (228)
T 2dzn_A          194 VEKYGAEYDLVDNKGAKAEDVA  215 (228)
T ss_dssp             HHHHCCCSCCBCTTSCBGGGGC
T ss_pred             HHhcCCCCCccCCCCCcHHHHH
Confidence            8 8899986   5677888777

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.94  E-value=6.5e-26  Score=172.91  Aligned_cols=148  Identities=26%  Similarity=0.252  Sum_probs=133.0

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCC-----CCCCCCCCCHHHH
Q 027950           52 DSTMQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI-----DARDRWGSTAAAD  125 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~-----~~~~~~g~t~L~~  125 (216)
                      .|.||||+|+..|+.++++.|++. |++++.++..|.||||+|+..|+.+++++|++.|+++     +..+..|.||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            478999999999999999999997 9999999999999999999999999999999999887     6778899999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCC----------------CCCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcc
Q 027950          126 AKYYGNVEVYNILKARGAKVPK----------------TKRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVP  186 (216)
Q Consensus       126 a~~~g~~~~~~~Ll~~g~~~~~----------------~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~  186 (216)
                      |+..|+.+++++|+++|++++.                .|.||||+|+..+..+    ++++|++.|++++   ..+.||
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~  157 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE----IVRLLIEHGADIRAQDSLGNTV  157 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCH
Confidence            9999999999999999999865                4999999999887554    5888999999986   568899


Q ss_pred             hHHH------HHH----HHHHHcCCCC
Q 027950          187 LIFV------HYV----ILLRQAGSFN  203 (216)
Q Consensus       187 l~~~------~~~----~~l~~~g~~~  203 (216)
                      ++.|      .++    ++|++.|+..
T Consensus       158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~  184 (232)
T 2rfa_A          158 LHILILQPNKTFACQMYNLLLSYDGGD  184 (232)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCch
Confidence            9988      344    8899998853

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=1.4e-25  Score=177.22  Aligned_cols=155  Identities=27%  Similarity=0.335  Sum_probs=131.3

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 027950           48 PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  127 (216)
Q Consensus        48 ~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~  127 (216)
                      ..+..+.|+||.||..|+.++++.|+++|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+
T Consensus        35 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           35 KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             CCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCccc----------------------------------------
Q 027950          128 YYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY----------------------------------------  164 (216)
Q Consensus       128 ~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~----------------------------------------  164 (216)
                      ..|+.+++++|+++|++++..   |.||||+|+..+..++                                        
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence            999999999999999998643   6677666654322111                                        


Q ss_pred             ----------------ccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          165 ----------------ELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       165 ----------------~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                                      ...++++|+..|++++   ..+.||++.|      .++++|++.|+.
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad  257 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD  257 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC
Confidence                            1235677888888875   5677888887      678888888875

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.93  E-value=1e-25  Score=172.24  Aligned_cols=165  Identities=25%  Similarity=0.316  Sum_probs=146.7

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCC-CCCCccCCCCchHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEG-IDVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      .++......+..+.++.+...+......+..|.||||+|+..|+.+++++|++.+ .+++..+..|.||||+|+..++.+
T Consensus        46 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~  125 (237)
T 3b7b_A           46 TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD  125 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHH
Confidence            3445555678888888887777777777888999999999999999999999998 789999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhc
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKAD  177 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~  177 (216)
                      ++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    +++++++.|+
T Consensus       126 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga  201 (237)
T 3b7b_A          126 LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYD----CVVLFLSRDS  201 (237)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHTTTC
T ss_pred             HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHh----HHHHHHHcCC
Confidence            999999999999999999999999999999999999999999998765   999999999888554    5788999999


Q ss_pred             CCC---CCCCcchHHH
Q 027950          178 GIT---KAWPVPLIFV  190 (216)
Q Consensus       178 ~~~---~~~~~~l~~~  190 (216)
                      +++   ..+.||++.|
T Consensus       202 d~~~~d~~g~t~l~~A  217 (237)
T 3b7b_A          202 DVTLKNKEGETPLQCA  217 (237)
T ss_dssp             CTTCCCTTSCCHHHHS
T ss_pred             CCCccCCCCCCHHHHH
Confidence            986   5677888776

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=2.6e-27  Score=186.74  Aligned_cols=175  Identities=16%  Similarity=0.104  Sum_probs=139.1

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      .+++.+...+..+.++.++..+......  +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus        33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~  110 (285)
T 3kea_A           33 SASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQT  110 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence            3445555577777777766554433222  48899999999999999999999999888888889999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCchhcccCCCCcccccchhhHHHHhhcC
Q 027950          102 VKLLLSKKANIDARDRWG-STAAADAKYYGNVEVYNILKARGAKVPK--TKRTPMTVANPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~~~g-~t~L~~a~~~g~~~~~~~Ll~~g~~~~~--~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                      +++|++.|++++..+..| .||||+|+..|+.+++++|+++|++...  .|.||||+|+..+..+    ++++|++.|++
T Consensus       111 v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~gad  186 (285)
T 3kea_A          111 VKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVD----MMILLLDYMTS  186 (285)
T ss_dssp             HHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHH----HHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHH----HHHHHHHcCCC
Confidence            999999999998888888 7999999999999999999998888733  4889999998877554    47888888888


Q ss_pred             CC---CCCCcc-hHHH------HHHHHHHHcCCC
Q 027950          179 IT---KAWPVP-LIFV------HYVILLRQAGSF  202 (216)
Q Consensus       179 ~~---~~~~~~-l~~~------~~~~~l~~~g~~  202 (216)
                      ++   ..+.|| ++.|      .++++|++.|+.
T Consensus       187 ~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad  220 (285)
T 3kea_A          187 TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN  220 (285)
T ss_dssp             TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC
T ss_pred             CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Confidence            76   446676 8877      578888888875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.93  E-value=2.2e-26  Score=170.93  Aligned_cols=152  Identities=20%  Similarity=0.213  Sum_probs=134.5

Q ss_pred             cccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHH
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      ..+++.....+..+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+
T Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  115 (192)
T 2rfm_A           36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSE  115 (192)
T ss_dssp             CCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHH
Confidence            34555556678888888777776666667788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhh
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKA  176 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g  176 (216)
                      ++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||+++|+..+..+    +++++++.|
T Consensus       116 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~----~v~~Ll~~~  190 (192)
T 2rfm_A          116 MSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE----VIKIFTEVR  190 (192)
T ss_dssp             HHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH----HHHHHHhcc
Confidence            999999999999999999999999999999999999999999998654   999999999888655    466666655

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=2.4e-26  Score=179.76  Aligned_cols=167  Identities=17%  Similarity=0.096  Sum_probs=139.0

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCC-----------------------
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGID-----------------------   78 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~-----------------------   78 (216)
                      .++......+..+.++.++..+......+..|.||||+|+..|+.+++++|++++++                       
T Consensus        47 t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (282)
T 1oy3_D           47 TALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHA  126 (282)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcc
Confidence            445555667888888888777777777788899999999999999999999988754                       


Q ss_pred             ------------------------CCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCCHH
Q 027950           79 ------------------------VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRW-GSTAAADAKYYGNVE  133 (216)
Q Consensus        79 ------------------------~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~a~~~g~~~  133 (216)
                                              ++..+..|.||||+|+..|+.+++++|++.|++++..+.. |+||||+|+..|+.+
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~  206 (282)
T 1oy3_D          127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS  206 (282)
T ss_dssp             -----------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             hhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHH
Confidence                                    6677889999999999999999999999999999999864 999999999999999


Q ss_pred             HHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCCCCCCcchHHHHH
Q 027950          134 VYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITKAWPVPLIFVHY  192 (216)
Q Consensus       134 ~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~~~  192 (216)
                      ++++|+++|++++..   |.||||+|+..+..+    ++++|++.|++++..+..+.++.++
T Consensus       207 ~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~  264 (282)
T 1oy3_D          207 VLELLLKAGADPTARMYGGRTPLGSALLRPNPI----LARLLRAHGAPEPEDGGDKLSPCSS  264 (282)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH----HHHHHHHTTCCCCCCC---------
T ss_pred             HHHHHHHcCCCCcccccCCCCHHHHHHHcCCcH----HHHHHHHcCCCcCcCCCcccccccc
Confidence            999999999999765   999999999988655    5889999999998544444444433

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=2.7e-26  Score=166.66  Aligned_cols=153  Identities=19%  Similarity=0.198  Sum_probs=134.7

Q ss_pred             cccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHH
Q 027950           23 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV  102 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  102 (216)
                      +++.+...++.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus         6 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   85 (167)
T 3v31_A            6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIV   85 (167)
T ss_dssp             CHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            44555667788888777776666666788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCC
Q 027950          103 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGI  179 (216)
Q Consensus       103 ~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~  179 (216)
                      ++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||+++|+..+..++    ++++++++.+.
T Consensus        86 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~----~~~L~~~~~~~  161 (167)
T 3v31_A           86 KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSV----QQVIESHLLKL  161 (167)
T ss_dssp             HHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH----HHHHHHHHHHH
T ss_pred             HHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHH----HHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998655   9999999998886654    66666665543

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=2.1e-26  Score=176.28  Aligned_cols=165  Identities=20%  Similarity=0.202  Sum_probs=145.6

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCC----CCCccCCCCchHHHHHHHcC
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGI----DVNSIDLDGRTALHIAACEG   97 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~----~~~~~~~~g~t~L~~a~~~~   97 (216)
                      .++......+..+.++.++..+......+..|.||||+|+..|+.+++++|++.+.    +++..+..|.||||+|+..+
T Consensus        48 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~  127 (241)
T 1k1a_A           48 TPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE  127 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcC
Confidence            44455556778888888777777666778889999999999999999999999886    78888999999999999999


Q ss_pred             CHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHH
Q 027950           98 HVEVVKLLLSKKANIDARD-RWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQV  173 (216)
Q Consensus        98 ~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~  173 (216)
                      +.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    ++++|+
T Consensus       128 ~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll  203 (241)
T 1k1a_A          128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLV  203 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHH
T ss_pred             CHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHH
Confidence            9999999999999999998 78999999999999999999999999999764   999999999887654    588999


Q ss_pred             HhhcCCC---CCCCcchHHH
Q 027950          174 RKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       174 ~~g~~~~---~~~~~~l~~~  190 (216)
                      +.|++++   ..+.||++.|
T Consensus       204 ~~ga~~~~~~~~g~tpl~~A  223 (241)
T 1k1a_A          204 RSGADSSLKNCHNDTPLMVA  223 (241)
T ss_dssp             HTTCCTTCCCTTSCCTTTTC
T ss_pred             hcCCCCCCcCCCCCCHHHHH
Confidence            9999986   5678888877

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.93  E-value=1.6e-25  Score=180.01  Aligned_cols=178  Identities=24%  Similarity=0.162  Sum_probs=150.0

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      .++......+..+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus        60 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  139 (351)
T 3utm_A           60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEV  139 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            44555566788888888877777777778889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCC------------------------------------------------------CCCCCHHHHHH
Q 027950          102 VKLLLSKKANIDARD------------------------------------------------------RWGSTAAADAK  127 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~------------------------------------------------------~~g~t~L~~a~  127 (216)
                      +++|+++|++++..+                                                      ..|.||||+|+
T Consensus       140 v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~  219 (351)
T 3utm_A          140 CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAV  219 (351)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHH
T ss_pred             HHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHH
Confidence            999999999887654                                                      45678888888


Q ss_pred             Hc---CCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HH
Q 027950          128 YY---GNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HY  192 (216)
Q Consensus       128 ~~---g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~  192 (216)
                      ..   +..+++++|+++|+++|..   |.||||+|+..+..+    ++++|++.|++++   ..+.||++.|      .+
T Consensus       220 ~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~  295 (351)
T 3utm_A          220 ASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND----VMEVLHKHGAKMNALDSLGQTALHRAALAGHLQT  295 (351)
T ss_dssp             HCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            88   4578899999999998654   889999998887554    5788888898886   5568888888      67


Q ss_pred             HHHHHHcCCCC
Q 027950          193 VILLRQAGSFN  203 (216)
Q Consensus       193 ~~~l~~~g~~~  203 (216)
                      +++|++.|+..
T Consensus       296 v~~Ll~~gad~  306 (351)
T 3utm_A          296 CRLLLSYGSDP  306 (351)
T ss_dssp             HHHHHHTTCCT
T ss_pred             HHHHHHcCCCC
Confidence            88888888753

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=2.2e-25  Score=174.15  Aligned_cols=180  Identities=27%  Similarity=0.247  Sum_probs=138.4

Q ss_pred             cccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHH
Q 027950           23 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV  102 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  102 (216)
                      ++......+..+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++
T Consensus        42 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  121 (285)
T 1wdy_A           42 PLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL  121 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHH
Confidence            34444556777777777666666666677788888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhCCCCCCCC----------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC---CCCchhcccCCCCcccccch
Q 027950          103 KLLLSKKANIDAR----------DRWGSTAAADAKYYGNVEVYNILKAR-GAKVPKT---KRTPMTVANPREVPEYELNP  168 (216)
Q Consensus       103 ~~Ll~~g~~~~~~----------~~~g~t~L~~a~~~g~~~~~~~Ll~~-g~~~~~~---g~t~l~~a~~~~~~~~~~~~  168 (216)
                      ++|++.|++++..          +..|.||||+|+..|+.+++++|+++ |++++..   |.||||+|+..+.......+
T Consensus       122 ~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i  201 (285)
T 1wdy_A          122 KFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAI  201 (285)
T ss_dssp             HHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHH
T ss_pred             HHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHH
Confidence            8888888888776          66788888888888888888888876 8887654   88888888776654444556


Q ss_pred             hhHHHHhhcCCC---CCCCcchHHH------HHHHHHHH-cCCC
Q 027950          169 LELQVRKADGIT---KAWPVPLIFV------HYVILLRQ-AGSF  202 (216)
Q Consensus       169 ~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~-~g~~  202 (216)
                      +++++..|++++   ..+.||++.|      .++++|++ .|+.
T Consensus       202 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~  245 (285)
T 1wdy_A          202 THLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE  245 (285)
T ss_dssp             HHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC
T ss_pred             HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCC
Confidence            778888888775   4577888877      56777777 5553

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=2.8e-26  Score=164.46  Aligned_cols=138  Identities=26%  Similarity=0.287  Sum_probs=121.0

Q ss_pred             ccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHH
Q 027950           26 SFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLL  105 (216)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L  105 (216)
                      .....++.+.++.++..+.. ...+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|
T Consensus         8 ~A~~~g~~~~v~~Ll~~g~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   86 (153)
T 1awc_B            8 EAARAGQDDEVRILMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVL   86 (153)
T ss_dssp             HHHHHTCHHHHHHHHHHTCC-CCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHH
Confidence            34445666666655544433 34577899999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCccc
Q 027950          106 LSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY  164 (216)
Q Consensus       106 l~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~  164 (216)
                      ++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..   |.||+++|+..+..++
T Consensus        87 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i  148 (153)
T 1awc_B           87 LKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             HTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999999999999999999999765   9999999998876553

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=2.5e-25  Score=184.69  Aligned_cols=175  Identities=27%  Similarity=0.274  Sum_probs=131.3

Q ss_pred             cccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHH
Q 027950           25 FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKL  104 (216)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  104 (216)
                      ......+..+.++.++..+......+..|.||||+|+..|+.++++.|++.|++++..+..|.||||+|+..|+.+++++
T Consensus       184 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~  263 (437)
T 1n11_A          184 HVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVAL  263 (437)
T ss_dssp             HHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            33344556666666666665555556677788888888888888888888888887777778888888888888888888


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC-
Q 027950          105 LLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT-  180 (216)
Q Consensus       105 Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~-  180 (216)
                      |++.|++++..+..|.||||+|+..|+.+++++|+++|+++|..   |.||||+|+..+..+    ++++|++.|++++ 
T Consensus       264 Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~gad~n~  339 (437)
T 1n11_A          264 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIK----LVKFLLQHQADVNA  339 (437)
T ss_dssp             HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSH----HHHHHHHTTCCTTC
T ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHH----HHHHHHhcCCCCCC
Confidence            88888888888888888888888888888888888888877654   888888888776544    4677778887775 


Q ss_pred             --CCCCcchHHH------HHHHHHHHcCCCC
Q 027950          181 --KAWPVPLIFV------HYVILLRQAGSFN  203 (216)
Q Consensus       181 --~~~~~~l~~~------~~~~~l~~~g~~~  203 (216)
                        ..+.||++.|      .++++|++.|+..
T Consensus       340 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~  370 (437)
T 1n11_A          340 KTKLGYSPLHQAAQQGHTDIVTLLLKNGASP  370 (437)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred             CCCCCCCHHHHHHHCChHHHHHHHHHCcCCC
Confidence              4567788777      5777888877753

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.7e-25  Score=169.90  Aligned_cols=133  Identities=20%  Similarity=0.223  Sum_probs=120.9

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 027950           48 PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  127 (216)
Q Consensus        48 ~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~  127 (216)
                      ..+..+.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~   95 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA   95 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            44667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCC----CCCCchhcc--cCCCCcccccchhhHHHHhhcCCCCCCC
Q 027950          128 YYGNVEVYNILKARGAKVPK----TKRTPMTVA--NPREVPEYELNPLELQVRKADGITKAWP  184 (216)
Q Consensus       128 ~~g~~~~~~~Ll~~g~~~~~----~g~t~l~~a--~~~~~~~~~~~~~~~l~~~g~~~~~~~~  184 (216)
                      ..|+.+++++|+++|++++.    .|.||||+|  +..+..+    ++++|++.|++++..+.
T Consensus        96 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~----~v~~Ll~~ga~~~~~~~  154 (229)
T 2vge_A           96 SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYAD----CATYLADVEQSMGLMNS  154 (229)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHH----HHHHHHHHHHHTTTSGG
T ss_pred             HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHH----HHHHHHHcCCCcccccC
Confidence            99999999999999999864    499999999  7766444    58889999988875443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.4e-25  Score=157.87  Aligned_cols=117  Identities=29%  Similarity=0.380  Sum_probs=109.8

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 027950           48 PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  127 (216)
Q Consensus        48 ~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~  127 (216)
                      ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCccc
Q 027950          128 YYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY  164 (216)
Q Consensus       128 ~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~  164 (216)
                      ..|+.+++++|+++|++++..   |.||+++|+..+..++
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~  124 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSL  124 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHH
Confidence            999999999999999998655   9999999998765543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=3.6e-25  Score=168.93  Aligned_cols=185  Identities=19%  Similarity=0.170  Sum_probs=151.8

Q ss_pred             CCccccccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccC-CCCchHHHHHH
Q 027950           16 FDPRRNNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSID-LDGRTALHIAA   94 (216)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~a~   94 (216)
                      .++.....++.....+..+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++... ..|.||||+|+
T Consensus         5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~   84 (240)
T 3eu9_A            5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT   84 (240)
T ss_dssp             CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred             cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHH
Confidence            34444555666677888888888777776666667889999999999999999999999998877654 45899999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhH
Q 027950           95 CEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLEL  171 (216)
Q Consensus        95 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~  171 (216)
                      ..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..   ...+++
T Consensus        85 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~---~~~~~~  161 (240)
T 3eu9_A           85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS---VDPTRL  161 (240)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS---STTHHH
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCCh---HHHHHH
Confidence            999999999999999999999999999999999999999999999999998654   89999999854431   235678


Q ss_pred             HHHhhcCCCC----CCCcchHHH------HHHHHHHHcCCCC
Q 027950          172 QVRKADGITK----AWPVPLIFV------HYVILLRQAGSFN  203 (216)
Q Consensus       172 l~~~g~~~~~----~~~~~l~~~------~~~~~l~~~g~~~  203 (216)
                      +...|++++.    .+.||++.|      .++++|++.|+..
T Consensus       162 L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  203 (240)
T 3eu9_A          162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV  203 (240)
T ss_dssp             HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT
T ss_pred             HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            8888888873    556888888      6788888888753

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=1.8e-26  Score=166.09  Aligned_cols=135  Identities=23%  Similarity=0.243  Sum_probs=113.6

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-HHHHH
Q 027950           48 PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST-AAADA  126 (216)
Q Consensus        48 ~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~a  126 (216)
                      ..+..+.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|++.|++++.++..|+| |||+|
T Consensus         7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B            7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            34566899999999999999999999999999999999999999985 89999999999999999999999999 99999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCCCCCCcch
Q 027950          127 KYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITKAWPVPL  187 (216)
Q Consensus       127 ~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~l  187 (216)
                      +..|+.+++++|+++|++++..   |.||||+|+..+..+    ++++|++.|++++..+..+.
T Consensus        86 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~  145 (156)
T 1bi7_B           86 AREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD----VARYLRAAAGGTRGSNHARI  145 (156)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHH----HHHHHSSCC-----------
T ss_pred             HHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHH----HHHHHHHcCCCCCccCcCcC
Confidence            9999999999999999999765   999999999887554    58889999999875544443

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=1.9e-25  Score=154.40  Aligned_cols=112  Identities=29%  Similarity=0.412  Sum_probs=103.8

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  129 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~  129 (216)
                      +..+.||||+|+..|+.++++.|++.|++++..+..|.||||+|+..++.+++++|++.|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCC---CCCchhcccCCCC
Q 027950          130 GNVEVYNILKARGAKVPKT---KRTPMTVANPREV  161 (216)
Q Consensus       130 g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~  161 (216)
                      |+.+++++|+++|++++..   |.||+++|...+.
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  118 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAI  118 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHH
Confidence            9999999999999998655   9999999966543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.93  E-value=2e-25  Score=182.25  Aligned_cols=178  Identities=20%  Similarity=0.199  Sum_probs=151.2

Q ss_pred             ccccccccCCCCcccccCC--------CCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSP--------VQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIA   93 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a   93 (216)
                      .++..+...+..+.++.++        ..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus       127 t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  206 (373)
T 2fo1_E          127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA  206 (373)
T ss_dssp             CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHH
Confidence            3344445566676666554        34555555678899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCC---CCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHHCCCCCCC-----------CCCCchhcc
Q 027950           94 ACEGHVEVVKLLLSKK---ANIDARDRWGSTAAADAKYYG---NVEVYNILKARGAKVPK-----------TKRTPMTVA  156 (216)
Q Consensus        94 ~~~~~~~~~~~Ll~~g---~~~~~~~~~g~t~L~~a~~~g---~~~~~~~Ll~~g~~~~~-----------~g~t~l~~a  156 (216)
                      +..|+.+++++|++.+   ++++..+..|.||||+|+..+   +.+++++|+++|++++.           .|.||||+|
T Consensus       207 ~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A  286 (373)
T 2fo1_E          207 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA  286 (373)
T ss_dssp             HHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHH
T ss_pred             HHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHH
Confidence            9999999999999998   899999999999999999998   89999999999999875           499999999


Q ss_pred             cCCCCcccccchhhHHHHhh-cCCC---CCCCcchHHH------HHHHHHHHcCCCC
Q 027950          157 NPREVPEYELNPLELQVRKA-DGIT---KAWPVPLIFV------HYVILLRQAGSFN  203 (216)
Q Consensus       157 ~~~~~~~~~~~~~~~l~~~g-~~~~---~~~~~~l~~~------~~~~~l~~~g~~~  203 (216)
                      +..+..+    ++++|+..+ ++++   ..+.||++.|      .++++|++.|+..
T Consensus       287 ~~~g~~~----~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~  339 (373)
T 2fo1_E          287 AQVSNMP----IVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV  339 (373)
T ss_dssp             HSSCCHH----HHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             HHhCCHH----HHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Confidence            9988655    578888776 7765   5688999998      6889999998863

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=2.6e-25  Score=153.61  Aligned_cols=123  Identities=37%  Similarity=0.503  Sum_probs=114.6

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 027950           52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  131 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~  131 (216)
                      +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcC
Q 027950          132 VEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       132 ~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                      .+++++|+++|++++..   |.||+++|+..+..+    +++++++.|++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~----~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE----VVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHH----HHHHHHHcCCC
Confidence            99999999999998654   999999999887554    57888888874

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=1.1e-26  Score=183.07  Aligned_cols=150  Identities=18%  Similarity=0.123  Sum_probs=135.0

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 027950           47 VPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  126 (216)
Q Consensus        47 ~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a  126 (216)
                      ...+..|.||||+|+..|+.+++++|+++|++++..  .|.||||+|+..|+.+++++|++.|++++..+..|+||||+|
T Consensus        25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A  102 (285)
T 3kea_A           25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA  102 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Confidence            455778999999999999999999999999999887  489999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCC---C-CCchhcccCCCCcccccchhhHHHHhhcCCCC--CCCcchHHH------HHHH
Q 027950          127 KYYGNVEVYNILKARGAKVPKT---K-RTPMTVANPREVPEYELNPLELQVRKADGITK--AWPVPLIFV------HYVI  194 (216)
Q Consensus       127 ~~~g~~~~~~~Ll~~g~~~~~~---g-~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~l~~~------~~~~  194 (216)
                      +..|+.+++++|+++|++++..   | .||||+|+..+..+    ++++++..|++...  .+.||++.|      .+++
T Consensus       103 ~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~  178 (285)
T 3kea_A          103 VDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMI  178 (285)
T ss_dssp             HHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccccCCccHHHHHHHcChHHHHH
Confidence            9999999999999999998765   6 79999999988654    58889999988743  678999988      6888


Q ss_pred             HHHHcCCC
Q 027950          195 LLRQAGSF  202 (216)
Q Consensus       195 ~l~~~g~~  202 (216)
                      +|++.|+.
T Consensus       179 ~Ll~~gad  186 (285)
T 3kea_A          179 LLLDYMTS  186 (285)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHcCCC
Confidence            88888764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=2e-25  Score=175.21  Aligned_cols=150  Identities=19%  Similarity=0.185  Sum_probs=133.5

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhCCC-CCCccCCCCchHHHHHH-----HcCCHHHHHHHHhCCCCCCCCCCCCC
Q 027950           47 VPENLDSTMQLLFMACSGDVKGVEDLLNEGI-DVNSIDLDGRTALHIAA-----CEGHVEVVKLLLSKKANIDARDRWGS  120 (216)
Q Consensus        47 ~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~a~-----~~~~~~~~~~Ll~~g~~~~~~~~~g~  120 (216)
                      ...+..|.||||+|+..|+.+++++|++.|+ +++..+..|.||||+|+     ..++.+++++|++.|.+++..+..|+
T Consensus       105 n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~  184 (276)
T 4hbd_A          105 NIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQ  184 (276)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCC
T ss_pred             cCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCC
Confidence            3457789999999999999999999999998 99999999999999999     66889999999999999999999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHH-hhcCCC---CCCCcchHHH---
Q 027950          121 TAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVR-KADGIT---KAWPVPLIFV---  190 (216)
Q Consensus       121 t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~-~g~~~~---~~~~~~l~~~---  190 (216)
                      ||||+|+..|+.+++++|+++|+++|..   |.||||+|+..+..+    ++++|+. .|++++   ..+.||++.|   
T Consensus       185 tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~----iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~  260 (276)
T 4hbd_A          185 TALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKE----IAGLLLAVPSCDISLTDRDGSTALMVALDA  260 (276)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHTSTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHH----HHHHHHhcCCCCCcCcCCCCCCHHHHHHHc
Confidence            9999999999999999999999999765   999999999988654    5788888 898876   6678888888   


Q ss_pred             ---HHHHHHHHcC
Q 027950          191 ---HYVILLRQAG  200 (216)
Q Consensus       191 ---~~~~~l~~~g  200 (216)
                         .++++|++.+
T Consensus       261 g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          261 GQSEIASMLYSRM  273 (276)
T ss_dssp             TCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHhcc
Confidence               5677777654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=5.2e-25  Score=168.51  Aligned_cols=154  Identities=18%  Similarity=0.130  Sum_probs=136.3

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCC------CCccCCCCchHHHHHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGID------VNSIDLDGRTALHIAAC   95 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~a~~   95 (216)
                      .++......+..+.++.++..+......+..|.||||+|+..|+.+++++|++.+++      ++..+..|.||||+|+.
T Consensus        47 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~  126 (236)
T 1ikn_D           47 TPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI  126 (236)
T ss_dssp             CHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHH
Confidence            444555567888888888888777777788999999999999999999999999875      46677889999999999


Q ss_pred             cCCHHHHHHHHhCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhH
Q 027950           96 EGHVEVVKLLLSKKANIDARDR-WGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLEL  171 (216)
Q Consensus        96 ~~~~~~~~~Ll~~g~~~~~~~~-~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~  171 (216)
                      .|+.+++++|++.|++++..+. .|+||||+|+..|+.+++++|+++|++++..   |.|||++|+..+..+    ++++
T Consensus       127 ~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~----~~~~  202 (236)
T 1ikn_D          127 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR----IQQQ  202 (236)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH----HHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchH----HHHH
Confidence            9999999999999999999997 9999999999999999999999999998765   999999999988655    5788


Q ss_pred             HHHhhcCC
Q 027950          172 QVRKADGI  179 (216)
Q Consensus       172 l~~~g~~~  179 (216)
                      |++.|++.
T Consensus       203 Ll~~ga~~  210 (236)
T 1ikn_D          203 LGQLTLEN  210 (236)
T ss_dssp             HHTTSCGG
T ss_pred             HHHcchhh
Confidence            99999855

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=3.2e-25  Score=170.35  Aligned_cols=152  Identities=24%  Similarity=0.163  Sum_probs=115.0

Q ss_pred             cccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHH
Q 027950           25 FSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKL  104 (216)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  104 (216)
                      ....+.+..+.++.++..+.. +..+..+.||||+|+..|+.++++.|++.|++++..+..|.||||+|+..|+.+++++
T Consensus        10 ~~a~~~~~~~~~~~ll~~g~~-~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~   88 (239)
T 1ycs_B           10 PPGKRTNLRKTGSERIAHGMR-VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKF   88 (239)
T ss_dssp             ----------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             chhhhhhhHHHHHHHhccCCC-cccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence            344445666666665555433 3456788999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CC-Cchhcc--cCCCCcccccchhhHHHHhhcC
Q 027950          105 LLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KR-TPMTVA--NPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       105 Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~-t~l~~a--~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..   |. ||+|+|  +..+..+    ++++|+..|++
T Consensus        89 Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~----~~~~Ll~~~a~  164 (239)
T 1ycs_B           89 LVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ----CSQFLYGVQEK  164 (239)
T ss_dssp             HHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC----HHHHHHHHHHH
T ss_pred             HHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHH----HHHHHHHhhhc
Confidence            99999999999999999999999999999999999999999765   44 999999  5555444    57888888888


Q ss_pred             CCC
Q 027950          179 ITK  181 (216)
Q Consensus       179 ~~~  181 (216)
                      ++.
T Consensus       165 ~~~  167 (239)
T 1ycs_B          165 MGI  167 (239)
T ss_dssp             TTT
T ss_pred             ccc
Confidence            764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=1.6e-25  Score=185.95  Aligned_cols=176  Identities=26%  Similarity=0.198  Sum_probs=114.5

Q ss_pred             cccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHH
Q 027950           23 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV  102 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  102 (216)
                      ++......|+.+.++.++..+......+..+.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus        17 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v   96 (437)
T 1n11_A           17 PLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMV   96 (437)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence            33444456666666666655555555566677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC---CCCCchhcccCCCCcccccchhhHHHHhhcCC
Q 027950          103 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPK---TKRTPMTVANPREVPEYELNPLELQVRKADGI  179 (216)
Q Consensus       103 ~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~---~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~  179 (216)
                      ++|++.|++++..+..|.||||+|+..|+.+++++|++++++++.   .|.||||+|+..+..+    +++++++.|+++
T Consensus        97 ~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~  172 (437)
T 1n11_A           97 KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR----VAELLLERDAHP  172 (437)
T ss_dssp             HHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred             HHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCC
Confidence            777777777777777777777777777777777777777666543   2667777666665433    355666666655


Q ss_pred             C---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          180 T---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       180 ~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      +   ..+.||++.|      .++++|++.|..
T Consensus       173 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  204 (437)
T 1n11_A          173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS  204 (437)
T ss_dssp             TCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            4   3445566555      455555555543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=6.1e-25  Score=171.64  Aligned_cols=177  Identities=23%  Similarity=0.239  Sum_probs=154.4

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCcc----------CCCCchHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSI----------DLDGRTALH   91 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~----------~~~g~t~L~   91 (216)
                      .++......++.+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..          +..|.||||
T Consensus        74 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~  153 (285)
T 1wdy_A           74 TPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM  153 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence            3344445577778777777777666677888999999999999999999999999998876          678999999


Q ss_pred             HHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCCCCCCC---CCCchhcccCCCCcc
Q 027950           92 IAACEGHVEVVKLLLSK-KANIDARDRWGSTAAADAKYYGN----VEVYNILKARGAKVPKT---KRTPMTVANPREVPE  163 (216)
Q Consensus        92 ~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~a~~~g~----~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~  163 (216)
                      +|+..|+.+++++|++. |++++..+..|.||||+|+..++    .+++++|+++|++++..   |.||||+|+..+..+
T Consensus       154 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~  233 (285)
T 1wdy_A          154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            99999999999999987 99999999999999999999999    89999999999998765   999999999988655


Q ss_pred             cccchhhHHHH-hhcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          164 YELNPLELQVR-KADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       164 ~~~~~~~~l~~-~g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                          +++++++ .|++++   ..+.||++.|      .++++|++.|+.
T Consensus       234 ----~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~  278 (285)
T 1wdy_A          234 ----LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             ----HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             ----HHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC
Confidence                4778887 788775   6788999998      689999999986

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=9.5e-25  Score=156.68  Aligned_cols=132  Identities=22%  Similarity=0.285  Sum_probs=97.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 027950           53 STMQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  131 (216)
Q Consensus        53 ~~t~L~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~  131 (216)
                      +.++||+|+..|+.++++.|++. +.+++..+..|.||||+ +..|+.+++++|++.|++++..+..|.||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            46778888888888888888876 33677777778888888 77788888888888888888888788888888888888


Q ss_pred             HHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          132 VEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       132 ~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      .+++++|+++|++++..   |.||||+|+..+..+    ++++++.. ++++   ..+.||++.|
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~-~~~~~~~~~g~t~l~~A  140 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA----VVSFLAAE-SDLHRRDARGLTPLELA  140 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH----HHHHHHTT-SCTTCCCTTSCCHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHH----HHHHHHhc-cCCCCcCCCCCCHHHHH
Confidence            88888888888777554   778888887766544    35666665 5554   4566666666

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.92  E-value=5.2e-25  Score=178.78  Aligned_cols=175  Identities=19%  Similarity=0.153  Sum_probs=131.0

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      ..++.....+..+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++.  ..|.||||+|+..|+.++
T Consensus        22 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~   99 (364)
T 3ljn_A           22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDL   99 (364)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHH
Confidence            334444556666666666666555555566677777777777777777777777765433  356777777777777777


Q ss_pred             HHHHHhC----CCCCCC-----------------CCCCCCCHHHHHHHcC--CHHHHHHHHHCCCCCCCC---CCCchhc
Q 027950          102 VKLLLSK----KANIDA-----------------RDRWGSTAAADAKYYG--NVEVYNILKARGAKVPKT---KRTPMTV  155 (216)
Q Consensus       102 ~~~Ll~~----g~~~~~-----------------~~~~g~t~L~~a~~~g--~~~~~~~Ll~~g~~~~~~---g~t~l~~  155 (216)
                      +++|++.    |++++.                 .+..|.||||+|+..|  +.+++++|+++|++++..   |.||||+
T Consensus       100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  179 (364)
T 3ljn_A          100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR  179 (364)
T ss_dssp             HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            7777776    666555                 7778999999999999  899999999999998765   8999999


Q ss_pred             ccCCCCcccccchhhHHHHhhcC-----CC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          156 ANPREVPEYELNPLELQVRKADG-----IT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       156 a~~~~~~~~~~~~~~~l~~~g~~-----~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      |+..+..+    ++++|+..|++     ++   ..+.||+|.|      .++++|++.|+.
T Consensus       180 A~~~g~~~----~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad  236 (364)
T 3ljn_A          180 AMEFRNRE----ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID  236 (364)
T ss_dssp             HHHTTCHH----HHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC
T ss_pred             HHHcCCHH----HHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99887654    57888888887     54   5788999988      688899988875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.92  E-value=1.6e-25  Score=160.71  Aligned_cols=139  Identities=21%  Similarity=0.243  Sum_probs=120.5

Q ss_pred             ccccccCCCCcccccCCCCC-CCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHH
Q 027950           24 RFSFGRQSSLDPIRRSPVQD-ELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV  102 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  102 (216)
                      ++.....++.+.++.++... ......+..|.||||+ +..|+.+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus         6 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   84 (156)
T 1bd8_A            6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTL   84 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            33444566666666665552 2344557779999999 999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCccc
Q 027950          103 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY  164 (216)
Q Consensus       103 ~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~  164 (216)
                      ++|++.|++++.+|..|+||||+|+..|+.+++++|+++ ++++..   |.|||++|+..+..++
T Consensus        85 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~  148 (156)
T 1bd8_A           85 KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             HHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHH
T ss_pred             HHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            999999999999999999999999999999999999999 888654   9999999998886654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.92  E-value=7.1e-24  Score=158.09  Aligned_cols=149  Identities=21%  Similarity=0.272  Sum_probs=132.4

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhCCC-CCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 027950           51 LDSTMQLLFMACSGDVKGVEDLLNEGI-DVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  129 (216)
Q Consensus        51 ~~~~t~L~~a~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~  129 (216)
                      ..+.||||.|+..|+.+.++.|+..+. +++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            457899999999999999999998875 8999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHH-HCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhh-cCCC---CCCCcchHHH-----------
Q 027950          130 GNVEVYNILK-ARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKA-DGIT---KAWPVPLIFV-----------  190 (216)
Q Consensus       130 g~~~~~~~Ll-~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g-~~~~---~~~~~~l~~~-----------  190 (216)
                      |+.+++++|+ ..+++++..   |.||||+|+..+..+    +++++++.| ++++   ..+.||++.|           
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  158 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID----NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ  158 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHH----HHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHH
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHH
Confidence            9999999999 667677654   999999999988654    588888888 6665   5688999887           


Q ss_pred             HHHHHHHHcCCCC
Q 027950          191 HYVILLRQAGSFN  203 (216)
Q Consensus       191 ~~~~~l~~~g~~~  203 (216)
                      .++++|++.|+..
T Consensus       159 ~~v~~Ll~~ga~~  171 (201)
T 3hra_A          159 DIVKLLMENGADQ  171 (201)
T ss_dssp             HHHHHHHHTTCCT
T ss_pred             HHHHHHHHCCCCC
Confidence            3788999998763

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.92  E-value=7.7e-25  Score=178.73  Aligned_cols=172  Identities=16%  Similarity=0.190  Sum_probs=142.5

Q ss_pred             cccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHH--------hCCCCCCccCCCCchHHHHHHHcCC
Q 027950           27 FGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLL--------NEGIDVNSIDLDGRTALHIAACEGH   98 (216)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll--------~~~~~~~~~~~~g~t~L~~a~~~~~   98 (216)
                      ++..++.+.+..+ ....++...+..|.||||+|+..|+.+++++|+        +.|+++|..|..|.||||+|+..|+
T Consensus       100 ~Aa~~~~~~~~~L-~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~  178 (373)
T 2fo1_E          100 TEAAGSYAITEPI-TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARR  178 (373)
T ss_dssp             HHHHSSSCCCSCC-STTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHhcCCchHHHHh-ccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcCh
Confidence            3333444544444 344455444578999999999999988777765        8899999999999999999999999


Q ss_pred             HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCC---CCCCchhcccCCCCcccccchhhHH
Q 027950           99 VEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG---AKVPK---TKRTPMTVANPREVPEYELNPLELQ  172 (216)
Q Consensus        99 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g---~~~~~---~g~t~l~~a~~~~~~~~~~~~~~~l  172 (216)
                      .+++++|++.|++++..+..|.||||+|+..|+.+++++|++++   ++++.   .|.||||+|+..+... ...+++++
T Consensus       179 ~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~-~~~~v~~L  257 (373)
T 2fo1_E          179 RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD-QVASAKLL  257 (373)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT-HHHHHHHH
T ss_pred             HHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcc-hHHHHHHH
Confidence            99999999999999999999999999999999999999999988   67754   4999999998765221 23468899


Q ss_pred             HHhhcCCCC-----------CCCcchHHH------HHHHHHHHcC
Q 027950          173 VRKADGITK-----------AWPVPLIFV------HYVILLRQAG  200 (216)
Q Consensus       173 ~~~g~~~~~-----------~~~~~l~~~------~~~~~l~~~g  200 (216)
                      +..|++++.           .+.||++.|      .++++|++.+
T Consensus       258 l~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~  302 (373)
T 2fo1_E          258 VEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEK  302 (373)
T ss_dssp             HHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHS
T ss_pred             HHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhc
Confidence            999999864           688999998      6888898776

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=165.75  Aligned_cols=177  Identities=19%  Similarity=0.189  Sum_probs=150.9

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCC-ccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPEN-LDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      .++......+..+.++.++..+....... ..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+
T Consensus        44 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~  123 (240)
T 3eu9_A           44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS  123 (240)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHH
Confidence            34455556778888887776665554443 44899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC-HHHHHHHHHCCCCCCCC----CCCchhcccCCCCcccccchhhHHHHh
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGN-VEVYNILKARGAKVPKT----KRTPMTVANPREVPEYELNPLELQVRK  175 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~-~~~~~~Ll~~g~~~~~~----g~t~l~~a~~~~~~~~~~~~~~~l~~~  175 (216)
                      ++++|++.|++++..+..|.||||+|+..++ .+++++|++.|++++..    |.||||+|+..+..+    +++++++.
T Consensus       124 ~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~  199 (240)
T 3eu9_A          124 IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT----VISLLLEA  199 (240)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHH----HHHHHHHH
T ss_pred             HHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHH----HHHHHHHc
Confidence            9999999999999999999999999997776 89999999999999754    889999999888554    58899999


Q ss_pred             hcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          176 ADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       176 g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      |++++   ..+.||++.|      .++++|++.+..
T Consensus       200 g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          200 GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            99986   5678899888      688888887764

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=7.6e-25  Score=161.65  Aligned_cols=110  Identities=31%  Similarity=0.312  Sum_probs=103.9

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHH
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKY  128 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~a~~  128 (216)
                      +..|.||||+|+..|+.++++.|++ |++++..+..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            4578999999999999999999999 99999999999999999999999999999999999999998 889999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCchhcccCCC
Q 027950          129 YGNVEVYNILKARGAKVPKT---KRTPMTVANPRE  160 (216)
Q Consensus       129 ~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~  160 (216)
                      .|+.+++++|+++|++++..   |.||||+|+..+
T Consensus       120 ~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          120 YVRPEVVEALVELGADIEVEDERGLTALELAREIL  154 (183)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhc
Confidence            99999999999999998755   999999998643

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=4.9e-24  Score=140.16  Aligned_cols=93  Identities=42%  Similarity=0.578  Sum_probs=89.3

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Q 027950           52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN  131 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~  131 (216)
                      +|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCC
Q 027950          132 VEVYNILKARGAK  144 (216)
Q Consensus       132 ~~~~~~Ll~~g~~  144 (216)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999985

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.91  E-value=4.2e-25  Score=169.73  Aligned_cols=148  Identities=15%  Similarity=0.103  Sum_probs=100.4

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  129 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~  129 (216)
                      +..|.||||.|+..++.+.++.|+++|++++. +..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            34689999999999999999999999999986 46789999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCCCC----CCcchHHH--------HHHH
Q 027950          130 GNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITKA----WPVPLIFV--------HYVI  194 (216)
Q Consensus       130 g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~~----~~~~l~~~--------~~~~  194 (216)
                      |+.+++++|+++|+++|..   |.||||+|+..+..+    ++++|+..|++++..    ..||++.+        .+++
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~  156 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ----VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ  156 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHH
Confidence            9999999999999999765   999999999888654    588999999998732    33888876        4677


Q ss_pred             HHHHcCCC
Q 027950          195 LLRQAGSF  202 (216)
Q Consensus       195 ~l~~~g~~  202 (216)
                      +|++.|+.
T Consensus       157 ~Ll~~~a~  164 (239)
T 1ycs_B          157 FLYGVQEK  164 (239)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhhhc
Confidence            88877664

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=1.3e-24  Score=164.93  Aligned_cols=127  Identities=23%  Similarity=0.337  Sum_probs=108.8

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhC-CCCCCCCCCCCCCHHHHHHH
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK-KANIDARDRWGSTAAADAKY  128 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~a~~  128 (216)
                      +..|.||||+|+..|+.++++.|++.|++++..+..|.||||+|+..|+.+++++|++. |++++..|..|+||||+|+.
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~  149 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAW  149 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHH
Confidence            34568999999999999999999999999999999999999999999999999999999 99999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC
Q 027950          129 YGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT  180 (216)
Q Consensus       129 ~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~  180 (216)
                      .|+.+++++|+++|++++..   |.|||++|+..+..+    +++.+...++...
T Consensus       150 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~----~l~~l~~~~~~~~  200 (222)
T 3ehr_A          150 KGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACAS----LLKKKQGTDAVRT  200 (222)
T ss_dssp             HTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHH----HHC----------
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHH----HHHHHhccchhhh
Confidence            99999999999999998765   999999999877554    4566666676664

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.91  E-value=1.9e-25  Score=173.28  Aligned_cols=149  Identities=19%  Similarity=0.185  Sum_probs=127.1

Q ss_pred             cCCCCcccccCCCCCC-----------CCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccC--------------
Q 027950           29 RQSSLDPIRRSPVQDE-----------LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSID--------------   83 (216)
Q Consensus        29 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~--------------   83 (216)
                      ..+..+.++.++..+.           .....+..|.||||+|+..|+.+++++|+++|++++..+              
T Consensus        58 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  137 (260)
T 3jxi_A           58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYF  137 (260)
T ss_dssp             BTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSC
T ss_pred             hcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccc
Confidence            4677777766655431           122334589999999999999999999999999999988              


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCCC-----
Q 027950           84 LDGRTALHIAACEGHVEVVKLLLS---KKANIDARDRWGSTAAADAKYYGN---------VEVYNILKARGAKVP-----  146 (216)
Q Consensus        84 ~~g~t~L~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~a~~~g~---------~~~~~~Ll~~g~~~~-----  146 (216)
                      ..|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..++         .+++++|+++|++++     
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~  217 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL  217 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccch
Confidence            689999999999999999999999   999999999999999999999887         799999999999873     


Q ss_pred             -----CCCCCchhcccCCCCcccccchhhHHHHhhcCCCC
Q 027950          147 -----KTKRTPMTVANPREVPEYELNPLELQVRKADGITK  181 (216)
Q Consensus       147 -----~~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~  181 (216)
                           ..|.||||+|+..+..+    ++++|+++|.....
T Consensus       218 ~~~~d~~g~tpL~~A~~~g~~~----~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          218 EALLNNDGLSPLMMAAKTGKIG----IFQHIIRREIADAA  253 (260)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHH----HHHHHHHHHHHHHC
T ss_pred             hhcccCCCCCHHHHHHHcCCHH----HHHHHHHhCCCccc
Confidence                 33999999999988655    57888888876543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.91  E-value=2.9e-25  Score=171.90  Aligned_cols=145  Identities=22%  Similarity=0.214  Sum_probs=124.3

Q ss_pred             CCCcccccCCCCCCCCC-----------CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCC-------------C
Q 027950           31 SSLDPIRRSPVQDELTV-----------PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLD-------------G   86 (216)
Q Consensus        31 ~~~~~~~~~~~~~~~~~-----------~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~-------------g   86 (216)
                      +..+.++.++..+....           ..+..|.||||+|+..|+.+++++|+++|++++..+..             |
T Consensus        57 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g  136 (256)
T 2etb_A           57 GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFG  136 (256)
T ss_dssp             TBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSC
T ss_pred             chHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCC
Confidence            77777766554433222           22367999999999999999999999999999998876             9


Q ss_pred             chHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHHCCCCC-------CC
Q 027950           87 RTALHIAACEGHVEVVKLLLS---KKANIDARDRWGSTAAADAKY--YGNVE-------VYNILKARGAKV-------PK  147 (216)
Q Consensus        87 ~t~L~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~a~~--~g~~~-------~~~~Ll~~g~~~-------~~  147 (216)
                      .||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.
T Consensus       137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  216 (256)
T 2etb_A          137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI  216 (256)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccc
Confidence            999999999999999999999   999999999999999999999  78888       999999999988       44


Q ss_pred             C---CCCchhcccCCCCcccccchhhHHHHhhcCC
Q 027950          148 T---KRTPMTVANPREVPEYELNPLELQVRKADGI  179 (216)
Q Consensus       148 ~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~  179 (216)
                      .   |.||||+|+..+..+    ++++|+++|...
T Consensus       217 ~d~~g~tpL~~A~~~g~~~----~v~~Ll~~g~~~  247 (256)
T 2etb_A          217 SNHQGLTPLKLAAKEGKIE----IFRHILQREFSG  247 (256)
T ss_dssp             CCTTSCCHHHHHHHTTCHH----HHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHhCCHH----HHHHHHhCCCCC
Confidence            3   999999999988655    477888887654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.91  E-value=3.3e-25  Score=177.94  Aligned_cols=156  Identities=13%  Similarity=0.011  Sum_probs=120.9

Q ss_pred             ccCCCCCCCCCC-CCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCC---HHHHHHHHhCC-CC
Q 027950           37 RRSPVQDELTVP-ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH---VEVVKLLLSKK-AN  111 (216)
Q Consensus        37 ~~~~~~~~~~~~-~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~Ll~~g-~~  111 (216)
                      +.++..+..... .+..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+..|+   .++++.|++.+ ++
T Consensus       114 ~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~  193 (327)
T 1sw6_A          114 DAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC  193 (327)
T ss_dssp             HHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG
T ss_pred             HHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc
Confidence            334444443444 68889999999999999999999999999999999999999999999998   67888888875 78


Q ss_pred             CCCCCCCCCCHHHHHHH----cCCHHHHHHHHHC--------------------CCCCCCC---CCCchhcccCCCCccc
Q 027950          112 IDARDRWGSTAAADAKY----YGNVEVYNILKAR--------------------GAKVPKT---KRTPMTVANPREVPEY  164 (216)
Q Consensus       112 ~~~~~~~g~t~L~~a~~----~g~~~~~~~Ll~~--------------------g~~~~~~---g~t~l~~a~~~~~~~~  164 (216)
                      ++..+..|+||||+|+.    .|+.+++++|++.                    |++++..   |.||||.|+.      
T Consensus       194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------  267 (327)
T 1sw6_A          194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------  267 (327)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------
T ss_pred             ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------
Confidence            99999999999999999    8999999999987                    6776554   8888888774      


Q ss_pred             ccchhhHHHHhhcCC-CCCCCcchHHH------HHHHHHHHcCCC
Q 027950          165 ELNPLELQVRKADGI-TKAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       165 ~~~~~~~l~~~g~~~-~~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                          +++++..+.+. +..+.||+|.|      .++++|++.|+.
T Consensus       268 ----~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad  308 (327)
T 1sw6_A          268 ----LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD  308 (327)
T ss_dssp             ----HHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred             ----HHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                44555554332 46678888887      577888888775

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.91  E-value=1.9e-24  Score=168.92  Aligned_cols=149  Identities=22%  Similarity=0.234  Sum_probs=124.9

Q ss_pred             CCCCcccccCCCCCCC-----------CCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCC--------------
Q 027950           30 QSSLDPIRRSPVQDEL-----------TVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDL--------------   84 (216)
Q Consensus        30 ~~~~~~~~~~~~~~~~-----------~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~--------------   84 (216)
                      .+..+.++.++..+..           ....+..|.||||+|+..|+.+++++|+++|++++..+.              
T Consensus        67 ~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  146 (273)
T 2pnn_A           67 NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY  146 (273)
T ss_dssp             TTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCC
T ss_pred             cCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccccccccc
Confidence            3777777665554321           112356799999999999999999999999999999886              


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHh---CCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHHCCCCCC------
Q 027950           85 DGRTALHIAACEGHVEVVKLLLS---KKANIDARDRWGSTAAADAKYYGN---------VEVYNILKARGAKVP------  146 (216)
Q Consensus        85 ~g~t~L~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~L~~a~~~g~---------~~~~~~Ll~~g~~~~------  146 (216)
                      .|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..|+         .+++++|+++|+++|      
T Consensus       147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~  226 (273)
T 2pnn_A          147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE  226 (273)
T ss_dssp             SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccc
Confidence            79999999999999999999999   999999999999999999999998         799999999999875      


Q ss_pred             ----CCCCCchhcccCCCCcccccchhhHHHHhhc-CCCCC
Q 027950          147 ----KTKRTPMTVANPREVPEYELNPLELQVRKAD-GITKA  182 (216)
Q Consensus       147 ----~~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~-~~~~~  182 (216)
                          ..|.||||+|+..+..+    ++++|+++|+ ++...
T Consensus       227 ~~~d~~g~TpL~~A~~~g~~~----iv~~Ll~~ga~dp~~~  263 (273)
T 2pnn_A          227 EITNRKGLTPLALAASSGKIG----VLAYILQREIHEPECR  263 (273)
T ss_dssp             GCCCTTSCCHHHHHHHTTCHH----HHHHHHHHHTC-----
T ss_pred             cccCCCCCCHHHHHHHhChHH----HHHHHHHCCCCCchhh
Confidence                23999999999988655    5889999999 66543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=4.9e-26  Score=168.71  Aligned_cols=135  Identities=18%  Similarity=0.129  Sum_probs=72.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhCCCCCCccC-CCCchHHHHHHHcCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 027950           54 TMQLLFMACSGDVKGVEDLLNEGIDVNSID-LDGRTALHIAACEGHV----EVVKLLLSKKANIDARDRWGSTAAADAKY  128 (216)
Q Consensus        54 ~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~a~~~~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~  128 (216)
                      .++|+.|+..|+.+.++.++..+.  +..+ ..|.||||+|+..++.    +++++|++.|++++.+|..|+||||+|+.
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            345566666666666655555432  2233 4455666666655543    35566666666666666666666666665


Q ss_pred             cCC------HHHHHHHHHCCCCCCCC---CC-CchhcccCCCCcc-cccchhhHHHH-hhcCCC---CCCCcchHHH
Q 027950          129 YGN------VEVYNILKARGAKVPKT---KR-TPMTVANPREVPE-YELNPLELQVR-KADGIT---KAWPVPLIFV  190 (216)
Q Consensus       129 ~g~------~~~~~~Ll~~g~~~~~~---g~-t~l~~a~~~~~~~-~~~~~~~~l~~-~g~~~~---~~~~~~l~~~  190 (216)
                      .|+      .+++++|+++|+++|..   |. ||||+|+..+..+ -...++++|+. .|++++   ..+.||++.|
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A  161 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV  161 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence            554      34556666666665544   55 6666655533221 12233455555 555554   3445555555

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.91  E-value=4.4e-24  Score=171.61  Aligned_cols=169  Identities=24%  Similarity=0.204  Sum_probs=114.0

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCC-CccchHHHHHHHHcCCHHHHHHHHhCCCCCC--------------------
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPE-NLDSTMQLLFMACSGDVKGVEDLLNEGIDVN--------------------   80 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~--------------------   80 (216)
                      ..++.....++++.++.++..+...... +..|.||||+|+..|+.++|++|+++|++++                    
T Consensus        27 t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~  106 (337)
T 4g8k_A           27 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVK  106 (337)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccch
Confidence            4456667788888888877766544333 3458899999999999999999998877554                    


Q ss_pred             -------------ccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCC----------CCCCCCHHHHHHHcCCHHHHHH
Q 027950           81 -------------SIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR----------DRWGSTAAADAKYYGNVEVYNI  137 (216)
Q Consensus        81 -------------~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~----------~~~g~t~L~~a~~~g~~~~~~~  137 (216)
                                   ..+..|.||||+|+..|+.+++++|++.|++++..          +..|.||||+|+..|+.+++++
T Consensus       107 ~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~  186 (337)
T 4g8k_A          107 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI  186 (337)
T ss_dssp             HHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHH
T ss_pred             hhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHH
Confidence                         34566778888888888888888888887777654          3357788888888888888888


Q ss_pred             HHH-CCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          138 LKA-RGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       138 Ll~-~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      |++ .|+++|..   |.|+++.++..........++++|++.|++++   ..+.||+|.+
T Consensus       187 LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a  246 (337)
T 4g8k_A          187 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA  246 (337)
T ss_dssp             HHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred             HHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            774 47776544   66776655332222212234555666666554   2344555554

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.91  E-value=1.4e-23  Score=168.65  Aligned_cols=148  Identities=22%  Similarity=0.221  Sum_probs=130.8

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHh-CCCCCCccCCCCchHHHHHHHcCC----HHHHHHHHhCCCCCCCCCCCCCCHH
Q 027950           49 ENLDSTMQLLFMACSGDVKGVEDLLN-EGIDVNSIDLDGRTALHIAACEGH----VEVVKLLLSKKANIDARDRWGSTAA  123 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~L  123 (216)
                      .+..|.||||+|+..|+.+++++|++ .|++++..+..|.|+++.++..+.    ..++++|+++|++++.++..|+|||
T Consensus       164 ~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L  243 (337)
T 4g8k_A          164 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL  243 (337)
T ss_dssp             CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred             ccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence            35568999999999999999999995 699999999999999998876543    3578999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHC-CCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCCCCCCcchHHH------HHH
Q 027950          124 ADAKYYGNVEVYNILKAR-GAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITKAWPVPLIFV------HYV  193 (216)
Q Consensus       124 ~~a~~~g~~~~~~~Ll~~-g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~------~~~  193 (216)
                      |+|+..|+.++++.|++. |+++|..   |+||||+|+..+..+    ++++|+++|++++..  +|++.|      .++
T Consensus       244 ~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~----iv~~Ll~~GAd~n~~--~~L~~A~~~~~~~iv  317 (337)
T 4g8k_A          244 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTDCG--DLVMTARRNYDHSLV  317 (337)
T ss_dssp             HHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHH----HHHHHHTTSCSSTTC--CHHHHHHHTTCHHHH
T ss_pred             HHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCC--CHHHHHHHcCCHHHH
Confidence            999999999999999975 8888764   999999999988655    588999999998864  588887      689


Q ss_pred             HHHHHcCCC
Q 027950          194 ILLRQAGSF  202 (216)
Q Consensus       194 ~~l~~~g~~  202 (216)
                      ++|++.|+.
T Consensus       318 ~~Ll~~GA~  326 (337)
T 4g8k_A          318 KVLLSHGAK  326 (337)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHCcCC
Confidence            999999985

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.90  E-value=1.3e-23  Score=155.66  Aligned_cols=150  Identities=16%  Similarity=0.102  Sum_probs=122.8

Q ss_pred             cccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCH----HHHHHHHhCCCCCCccCCCCchHHHHHHHcCC
Q 027950           23 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDV----KGVEDLLNEGIDVNSIDLDGRTALHIAACEGH   98 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~   98 (216)
                      .+|..++.|..+.+....... .+...+..|.||||+|+..|+.    +++++|+++|+++|.++..|.||||+|+..++
T Consensus         9 ~l~~Aa~~g~~~~~~~l~~~~-~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~   87 (186)
T 3t8k_A            9 TVSAAAMLGTYEDFLELFEKG-YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG   87 (186)
T ss_dssp             SHHHHHHHSCHHHHHHHHHHS-SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred             HHHHHHHcCCHHHHHHHHhcC-cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence            356667778877776655443 3333336699999999999975    58999999999999999999999999999887


Q ss_pred             ------HHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcC-----CHHHHHHHHH-CCCCCCCC---CCCchhcccCCCCc
Q 027950           99 ------VEVVKLLLSKKANIDARDRWGS-TAAADAKYYG-----NVEVYNILKA-RGAKVPKT---KRTPMTVANPREVP  162 (216)
Q Consensus        99 ------~~~~~~Ll~~g~~~~~~~~~g~-t~L~~a~~~g-----~~~~~~~Ll~-~g~~~~~~---g~t~l~~a~~~~~~  162 (216)
                            .+++++|++.|++++.+|..|+ ||||+|+..+     ..+++++|++ +|++++..   |.||||+|+..+..
T Consensus        88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~  167 (186)
T 3t8k_A           88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKP  167 (186)
T ss_dssp             TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCH
T ss_pred             cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCH
Confidence                  5789999999999999999999 9999999954     3569999999 99999765   99999999998876


Q ss_pred             ccccchhhHHHHhhc
Q 027950          163 EYELNPLELQVRKAD  177 (216)
Q Consensus       163 ~~~~~~~~~l~~~g~  177 (216)
                      +.    ++++.....
T Consensus       168 ~~----v~~L~~~~~  178 (186)
T 3t8k_A          168 IA----LKMMEDYIK  178 (186)
T ss_dssp             HH----HHHHHHHHH
T ss_pred             HH----HHHHHHHHH
Confidence            54    445444443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.90  E-value=1.5e-25  Score=171.31  Aligned_cols=161  Identities=18%  Similarity=0.142  Sum_probs=137.5

Q ss_pred             cccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHH
Q 027950           23 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV  102 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  102 (216)
                      +++.....+..+.++.++..+......+..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++
T Consensus        24 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v  103 (229)
T 2vge_A           24 LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVIC  103 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            34555667888888888777766666788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCC-CCCCCHHHHH--HHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhh
Q 027950          103 KLLLSKKANIDARD-RWGSTAAADA--KYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKA  176 (216)
Q Consensus       103 ~~Ll~~g~~~~~~~-~~g~t~L~~a--~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g  176 (216)
                      ++|++.|++++..+ ..|+||||+|  +..|+.+++++|+++|++++..   |.++++.++.....+       +++..|
T Consensus       104 ~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~-------~ll~~g  176 (229)
T 2vge_A          104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-------LSFREG  176 (229)
T ss_dssp             HHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTB-------CCBCTT
T ss_pred             HHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccc-------cCcccc
Confidence            99999999999986 6999999999  9999999999999999998776   788888666555433       334556


Q ss_pred             cCC-----CCCCCcchHHH
Q 027950          177 DGI-----TKAWPVPLIFV  190 (216)
Q Consensus       177 ~~~-----~~~~~~~l~~~  190 (216)
                      +++     +..+.||++.|
T Consensus       177 a~~~~~~~d~~G~TpL~~A  195 (229)
T 2vge_A          177 ESVTVLRRDGPEETDWWWA  195 (229)
T ss_dssp             CEEEEEESSCTTCSSEEEE
T ss_pred             ccccccccCCCcccHHHHH
Confidence            663     46688998876

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.90  E-value=3.5e-24  Score=168.03  Aligned_cols=152  Identities=23%  Similarity=0.216  Sum_probs=133.6

Q ss_pred             cccccccccCCCCcccccCCCCCC-CCCCCCccchHHHHHHH-----HcCCHHHHHHHHhCCCCCCccCCCCchHHHHHH
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQDE-LTVPENLDSTMQLLFMA-----CSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAA   94 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~t~L~~a~-----~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~   94 (216)
                      ..++......+..+.++.++..+. .....+..|.||||+|+     ..++.++++.|++.|.+++..+..|.||||+|+
T Consensus       112 ~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~  191 (276)
T 4hbd_A          112 NTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAV  191 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            355555666888888888888776 66667888999999999     568899999999999988888999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC---CCCchhcccCCCCcccccchhh
Q 027950           95 CEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA-RGAKVPKT---KRTPMTVANPREVPEYELNPLE  170 (216)
Q Consensus        95 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~-~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~  170 (216)
                      ..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++ .|++++..   |.|||++|+..+..+    +++
T Consensus       192 ~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~----iv~  267 (276)
T 4hbd_A          192 SHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSE----IAS  267 (276)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHH----HHH
T ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHH----HHH
Confidence            9999999999999999999999999999999999999999999999 89998755   999999999988655    466


Q ss_pred             HHHHhh
Q 027950          171 LQVRKA  176 (216)
Q Consensus       171 ~l~~~g  176 (216)
                      +|++++
T Consensus       268 ~Ll~~~  273 (276)
T 4hbd_A          268 MLYSRM  273 (276)
T ss_dssp             HHHHHC
T ss_pred             HHHhcc
Confidence            666654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=1.8e-23  Score=161.17  Aligned_cols=108  Identities=31%  Similarity=0.334  Sum_probs=102.7

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHH
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKY  128 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~a~~  128 (216)
                      +..|.||||+|+..|+.++++.|++ |++++.++..|.||||+|+..|+.+++++|+++|++++..+ ..|+||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            4579999999999999999999999 99999999999999999999999999999999999999998 789999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCchhcccC
Q 027950          129 YGNVEVYNILKARGAKVPKT---KRTPMTVANP  158 (216)
Q Consensus       129 ~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~  158 (216)
                      .|+.+++++|+++|++++..   |.||||+|+.
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            99999999999999999755   9999999975

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=6.8e-23  Score=162.70  Aligned_cols=132  Identities=21%  Similarity=0.296  Sum_probs=118.2

Q ss_pred             cchHHHHHHHHcCCHHHHHHHHhCCCCCCc------cCCCCchHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCCH
Q 027950           52 DSTMQLLFMACSGDVKGVEDLLNEGIDVNS------IDLDGRTALHIAACE---GHVEVVKLLLSKKANIDARDRWGSTA  122 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~------~~~~g~t~L~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~  122 (216)
                      ...++|+.|+..|+.+.++.|++.|++++.      .+..|.||||+|+..   ++.+++++|+++|++++.+|..|+||
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            356889999999999999999999999987      588999999999987   89999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCCCCCCcchHHH
Q 027950          123 AADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITKAWPVPLIFV  190 (216)
Q Consensus       123 L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~  190 (216)
                      ||+|+..|+.+++++|+++|++++..   |.|||++|+..+..+    ++++|+..|++   .+.||++.|
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~----iv~~Ll~~ga~---~g~tpLh~A  293 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE----CEELLEQAQAG---TFAFPLHVD  293 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHH----HHHHHHHHHHH---TTSSCCC--
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHHhcCC---CCCChhHHH
Confidence            99999999999999999999999665   999999999887655    47888888887   467898877

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=5.9e-24  Score=152.88  Aligned_cols=133  Identities=21%  Similarity=0.243  Sum_probs=110.5

Q ss_pred             cccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCch-HHHHHHHcCCH
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRT-ALHIAACEGHV   99 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~a~~~~~~   99 (216)
                      ...++.....+..+.++.++..+......+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+|+..|+.
T Consensus        13 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~   91 (156)
T 1bi7_B           13 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   91 (156)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCH
Confidence            34555666678888888888777666677888999999985 99999999999999999999999999 99999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchh
Q 027950          100 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMT  154 (216)
Q Consensus       100 ~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~  154 (216)
                      +++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..   |.||.+
T Consensus        92 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           92 DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            9999999999999999999999999999999999999999999999765   777765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.89  E-value=9e-24  Score=148.50  Aligned_cols=123  Identities=20%  Similarity=0.210  Sum_probs=112.2

Q ss_pred             cccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCC-CchHHHHHHHcCCH
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLD-GRTALHIAACEGHV   99 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~a~~~~~~   99 (216)
                      ..+++.....+..+.++.++..+......+..|.||||+|+. |+.+++++|+++|++++.++.. |.||||+|+..|+.
T Consensus        13 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~   91 (136)
T 1d9s_A           13 DAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   91 (136)
T ss_dssp             SCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCH
Confidence            344555666788888888777776666778889999999999 9999999999999999999999 99999999999999


Q ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Q 027950          100 EVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK  144 (216)
Q Consensus       100 ~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~  144 (216)
                      +++++|+++|++++..|..|+||||+|+..++.+++++|+++|++
T Consensus        92 ~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           92 DTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.89  E-value=4.2e-23  Score=145.05  Aligned_cols=121  Identities=29%  Similarity=0.378  Sum_probs=109.9

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      ...+.+...+..+.++.++..+......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.++
T Consensus        16 t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~   95 (136)
T 2jab_A           16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI   95 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            44455566788888888777776666678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Q 027950          102 VKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG  142 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g  142 (216)
                      +++|+++|++++..|..|+||||+|+..|+.+++++|+++|
T Consensus        96 v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           96 AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999876

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=2.5e-23  Score=165.24  Aligned_cols=135  Identities=20%  Similarity=0.170  Sum_probs=112.3

Q ss_pred             ccccccCCCCcccccCCCCCCCCCC------CCccchHHHHHHHHc---CCHHHHHHHHhCCCCCCccCCCCchHHHHHH
Q 027950           24 RFSFGRQSSLDPIRRSPVQDELTVP------ENLDSTMQLLFMACS---GDVKGVEDLLNEGIDVNSIDLDGRTALHIAA   94 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~t~L~~a~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~   94 (216)
                      ++.....++.+.+..++..+.....      .+..|.||||+|+..   |+.+++++|+++|+++|.+|..|.||||+|+
T Consensus       155 L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~  234 (301)
T 2b0o_E          155 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAA  234 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHH
T ss_pred             HhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence            3444556666666665544443333      477899999999997   8999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCchhcccCCCC
Q 027950           95 CEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREV  161 (216)
Q Consensus        95 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~g~t~l~~a~~~~~  161 (216)
                      ..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++   .|.||||+|+..++
T Consensus       235 ~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          235 LYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---TFAFPLHVDYSWVI  298 (301)
T ss_dssp             HTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---TTSSCCC-------
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---CCCChhHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999987   68999999987664

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.88  E-value=5e-23  Score=140.45  Aligned_cols=104  Identities=39%  Similarity=0.538  Sum_probs=96.7

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 027950           49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKY  128 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~  128 (216)
                      .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++..|..|+||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            46689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCCCCCCC---CCCc
Q 027950          129 YGNVEVYNILKARGAKVPKT---KRTP  152 (216)
Q Consensus       129 ~g~~~~~~~Ll~~g~~~~~~---g~t~  152 (216)
                      .|+.+++++|+++|+++|..   |.+|
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             CCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            99999999999999998644   5554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=3.2e-22  Score=162.67  Aligned_cols=125  Identities=22%  Similarity=0.277  Sum_probs=112.4

Q ss_pred             CccchHHHHHHHHc-CCHHHHHHHHhCCCCCCccC--CCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 027950           50 NLDSTMQLLFMACS-GDVKGVEDLLNEGIDVNSID--LDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  126 (216)
Q Consensus        50 ~~~~~t~L~~a~~~-g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a  126 (216)
                      ...+.|+||+|+.. |+.++++.|+++|++++..+  ..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34567899999999 99999999999999999988  8899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcC
Q 027950          127 KYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       127 ~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                      +..|+.+++++|+++|++++..   |.||||+|+..+..++    +++|+..+..
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~i----v~lLl~~~~~  326 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI----VTLLRLAKMR  326 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHHHC-
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHH----HHHHHHcCCC
Confidence            9999999999999999999765   9999999998886653    5666665533

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.87  E-value=2.8e-22  Score=138.22  Aligned_cols=118  Identities=35%  Similarity=0.459  Sum_probs=105.0

Q ss_pred             cccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHH
Q 027950           27 FGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL  106 (216)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  106 (216)
                      ....++.+.++.+...+......+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+
T Consensus         9 A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll   88 (126)
T 1n0r_A            9 AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL   88 (126)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHH
Confidence            33455566665555555445556778999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Q 027950          107 SKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK  144 (216)
Q Consensus       107 ~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~  144 (216)
                      +.|++++..+..|.|||++|+..|+.+++++|+++|++
T Consensus        89 ~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           89 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999986

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.86  E-value=7.7e-23  Score=164.11  Aligned_cols=159  Identities=13%  Similarity=0.005  Sum_probs=104.5

Q ss_pred             cccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCC---HHHHHHHHhCC-CCCCccCCCCchHHHHHHH-
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGD---VKGVEDLLNEG-IDVNSIDLDGRTALHIAAC-   95 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~---~~~v~~Ll~~~-~~~~~~~~~g~t~L~~a~~-   95 (216)
                      ..+++.+...+..+.++.++..+......+..|.||||+|+..|+   .++++.|++.+ ++++.++..|.||||+|+. 
T Consensus       132 ~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~  211 (327)
T 1sw6_A          132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIIT  211 (327)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHH
Confidence            345555666888888888888887777888899999999999998   78888888876 6799999999999999999 


Q ss_pred             ---cCCHHHHHHHHhC--------------------CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCC
Q 027950           96 ---EGHVEVVKLLLSK--------------------KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV-PKTKRT  151 (216)
Q Consensus        96 ---~~~~~~~~~Ll~~--------------------g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~-~~~g~t  151 (216)
                         .|+.+++++|++.                    |++++..+..|.||||+|+.      +++|++++.+. +..|+|
T Consensus       212 ~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~~n~~d~~G~T  285 (327)
T 1sw6_A          212 SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANMLNAQDSNGDT  285 (327)
T ss_dssp             HTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHHTTTCCCTTSCC
T ss_pred             ccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhCCCCCCCCCCC
Confidence               8999999999987                    56666555555555555553      45555553322 222555


Q ss_pred             chhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHH
Q 027950          152 PMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIF  189 (216)
Q Consensus       152 ~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~  189 (216)
                      |||+|+..+..+    ++++|++.|++++   ..+.||++.
T Consensus       286 pLh~A~~~g~~~----~v~~Ll~~Gad~~~~d~~G~TpL~~  322 (327)
T 1sw6_A          286 CLNIAARLGNIS----IVDALLDYGADPFIANKSGLRPVDF  322 (327)
T ss_dssp             HHHHHHHHCCHH----HHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred             HHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence            555555554332    3455555555554   334445443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=3.4e-21  Score=151.22  Aligned_cols=124  Identities=23%  Similarity=0.258  Sum_probs=112.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhCCCCCC------ccCCCCchHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCCHH
Q 027950           53 STMQLLFMACSGDVKGVEDLLNEGIDVN------SIDLDGRTALHIAACE---GHVEVVKLLLSKKANIDARDRWGSTAA  123 (216)
Q Consensus        53 ~~t~L~~a~~~g~~~~v~~Ll~~~~~~~------~~~~~g~t~L~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~L  123 (216)
                      ..++|+.|+..|+.+.++.+++.|++++      ..+..|.||||+|+..   ++.+++++|+++|++++.+|..|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            4579999999999999999999998854      4478899999999999   899999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC
Q 027950          124 ADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT  180 (216)
Q Consensus       124 ~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~  180 (216)
                      |+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    ++++|++.|++..
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH----CEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCC
Confidence            9999999999999999999999765   999999999988655    4788888888653

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1.5e-21  Score=153.36  Aligned_cols=106  Identities=23%  Similarity=0.188  Sum_probs=98.3

Q ss_pred             CCccchHHHHHHHHc---CCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 027950           49 ENLDSTMQLLFMACS---GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD  125 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  125 (216)
                      .+..|.||||+|+..   |+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus       165 ~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~  244 (278)
T 1dcq_A          165 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  244 (278)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHH
Confidence            367799999999999   89999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCchhcccCC
Q 027950          126 AKYYGNVEVYNILKARGAKVPKTKRTPMTVANPR  159 (216)
Q Consensus       126 a~~~g~~~~~~~Ll~~g~~~~~~g~t~l~~a~~~  159 (216)
                      |+..|+.+++++|+++|++     .+++|.+...
T Consensus       245 A~~~~~~~~v~~Ll~~ga~-----~~~~~~~v~~  273 (278)
T 1dcq_A          245 AKRLKHEHCEELLTQALSG-----RFNSHVHVEY  273 (278)
T ss_dssp             HHHTTCHHHHHHHHHHHTT-----CCCSSCCCCC
T ss_pred             HHHcCCHHHHHHHHHcCCC-----CCCcceeeec
Confidence            9999999999999999885     3666666543

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.85  E-value=2.6e-20  Score=126.11  Aligned_cols=95  Identities=38%  Similarity=0.467  Sum_probs=86.0

Q ss_pred             CCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHH
Q 027950           44 ELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAA  123 (216)
Q Consensus        44 ~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L  123 (216)
                      ......+.+|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus        15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl   94 (110)
T 2zgd_A           15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAF   94 (110)
T ss_dssp             -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHH
Confidence            34456678899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHH
Q 027950          124 ADAKYYGNVEVYNIL  138 (216)
Q Consensus       124 ~~a~~~g~~~~~~~L  138 (216)
                      |+|+..|+.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=7.8e-21  Score=133.43  Aligned_cols=110  Identities=25%  Similarity=0.301  Sum_probs=97.7

Q ss_pred             CCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCc
Q 027950           76 GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTP  152 (216)
Q Consensus        76 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~  152 (216)
                      |+|+ .++..|.||||+|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|++++..   |.||
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            5666 67889999999999999999999999999999999999999999999999999999999999999766   9999


Q ss_pred             hhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          153 MTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       153 l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      ||+|+..+..+    ++++++..|++++   ..+.||++.|
T Consensus        80 L~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~g~tpl~~A  116 (137)
T 3c5r_A           80 LHDAAKNGHVD----IVKLLLSYGASRNAVNIFGLRPVDYT  116 (137)
T ss_dssp             HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCGGGGC
T ss_pred             HHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            99999888654    5888899999986   5677888877

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=2.5e-20  Score=122.27  Aligned_cols=90  Identities=39%  Similarity=0.533  Sum_probs=81.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCC
Q 027950           85 DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREV  161 (216)
Q Consensus        85 ~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~  161 (216)
                      +|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..   |.||||+|+..+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            4789999999999999999999999999999999999999999999999999999999998665   9999999998885


Q ss_pred             cccccchhhHHHHhhcC
Q 027950          162 PEYELNPLELQVRKADG  178 (216)
Q Consensus       162 ~~~~~~~~~~l~~~g~~  178 (216)
                      .+    +++++++.|++
T Consensus        81 ~~----~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LE----VVKLLLEAGAY   93 (93)
T ss_dssp             HH----HHHHHHHTTCC
T ss_pred             HH----HHHHHHHcCCC
Confidence            54    47788888764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=1.9e-21  Score=134.14  Aligned_cols=109  Identities=28%  Similarity=0.248  Sum_probs=96.7

Q ss_pred             cccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHH
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      ...++.....++.+.++.++..+......+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~   87 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   87 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHH
Confidence            34455566677888888777777666667788999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYY  129 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~  129 (216)
                      ++++|++.|++++.+|..|+||+|+|...
T Consensus        88 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           88 CVKLLLSKGADKTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence            99999999999999999999999999543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.81  E-value=3.6e-20  Score=150.58  Aligned_cols=134  Identities=23%  Similarity=0.279  Sum_probs=106.5

Q ss_pred             cccccC-CCCcccccCCCCCCCCCCCC--ccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHH
Q 027950           25 FSFGRQ-SSLDPIRRSPVQDELTVPEN--LDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEV  101 (216)
Q Consensus        25 ~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~  101 (216)
                      +..... +..+.++.++..+......+  ..|.||||+|+..|+.+++++|+++|+++|..|..|.||||+|+..|+.++
T Consensus       204 ~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~  283 (368)
T 3jue_A          204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGL  283 (368)
T ss_dssp             HHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHH
Confidence            344555 77777777766665555555  789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCchhcccC
Q 027950          102 VKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV------PKTKRTPMTVANP  158 (216)
Q Consensus       102 ~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~------~~~g~t~l~~a~~  158 (216)
                      +++|+++|++++..|..|.||||+|+..|+.+++++|+..+..-      +..+.|++.++..
T Consensus       284 v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD  346 (368)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999876442      1227777766543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=3.7e-22  Score=162.81  Aligned_cols=143  Identities=15%  Similarity=0.051  Sum_probs=97.1

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCC---CccCCCCchHHHHHHHcCCHHHHHHHHhCCCCC---CCCCCCCCCHH
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDV---NSIDLDGRTALHIAACEGHVEVVKLLLSKKANI---DARDRWGSTAA  123 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L  123 (216)
                      +.++.||||+|+..|+.+++++|++.|+..   +..+..|.||||+|+..|+.+++++|++.|+++   +..+.. .|||
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpL  167 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAF  167 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHH
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHH
Confidence            344568888888888888888888887621   123345678888888888888888888888652   222222 7888


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCC-----CCCCCchhccc-CCCCcccccchhhHHHHhhcCCCCCCCcchHHH------H
Q 027950          124 ADAKYYGNVEVYNILKARGAKVP-----KTKRTPMTVAN-PREVPEYELNPLELQVRKADGITKAWPVPLIFV------H  191 (216)
Q Consensus       124 ~~a~~~g~~~~~~~Ll~~g~~~~-----~~g~t~l~~a~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~------~  191 (216)
                      |+|+..|+.+++++|+++|++++     ..|.||||+|+ ..+..+    ++++|+..|+.    +.||++.|      .
T Consensus       168 h~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~e----iv~~Ll~~ga~----~~taL~~Aa~~g~~e  239 (376)
T 2aja_A          168 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN----VINFLLDCPVM----LAYAEIHEFEYGEKY  239 (376)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH----HHHHHTTSHHH----HHHHHHCTTTTTTTT
T ss_pred             HHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHH----HHHHHHhCCCc----cchHHHHHHHCCCHH
Confidence            88888888888888888888844     34888888888 777655    36666666643    45565555      4


Q ss_pred             HHHHHHHcCC
Q 027950          192 YVILLRQAGS  201 (216)
Q Consensus       192 ~~~~l~~~g~  201 (216)
                      ++++|++.|+
T Consensus       240 vv~lL~~~ga  249 (376)
T 2aja_A          240 VNPFIARHVN  249 (376)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHhcCc
Confidence            5566665553

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.81  E-value=5.4e-21  Score=144.93  Aligned_cols=127  Identities=23%  Similarity=0.194  Sum_probs=104.1

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCchHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      ..++.....+..+.++.++..+......+..|.||||+|+..|+.+++++|++. |++++..+..|.||||+|+..|+.+
T Consensus        75 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~  154 (222)
T 3ehr_A           75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYAD  154 (222)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHH
T ss_pred             cccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHH
Confidence            344445567778888877777766666788899999999999999999999998 9999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT  148 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~  148 (216)
                      ++++|+++|++++.+|..|+|||++|+..++.++++.|++.|+..+..
T Consensus       155 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~  202 (222)
T 3ehr_A          155 IVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS  202 (222)
T ss_dssp             HHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred             HHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence            999999999999999999999999999999999999999999986443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.80  E-value=9.2e-20  Score=134.26  Aligned_cols=127  Identities=27%  Similarity=0.269  Sum_probs=106.5

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccC-CCCchHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSID-LDGRTALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~a~~~~~~~  100 (216)
                      .+++.....+..+.++.++. +......+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+
T Consensus        46 t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~  124 (183)
T 3deo_A           46 TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE  124 (183)
T ss_dssp             HHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHH
Confidence            34455566788888887777 55555667889999999999999999999999999999888 88999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCchhcccCCCCcc
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPE  163 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~g~t~l~~a~~~~~~~  163 (216)
                      ++++|+++|++++.+|..|+||||+|+..++.              ..+.+++++|+..+..+
T Consensus       125 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~--------------~~~~~~l~~a~~~~~~~  173 (183)
T 3deo_A          125 VVEALVELGADIEVEDERGLTALELAREILKT--------------TPKGNPMQFGRRIGLEK  173 (183)
T ss_dssp             HHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT--------------CCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC--------------cccccHHHHHHHcCHHH
Confidence            99999999999999999999999999875322              23567888777665433

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.80  E-value=1.7e-19  Score=138.81  Aligned_cols=106  Identities=29%  Similarity=0.292  Sum_probs=94.7

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccC-CCCchHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSID-LDGRTALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~a~~~~~~~  100 (216)
                      ..++.....+..+.++.++. +......+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+
T Consensus        47 t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~  125 (244)
T 3ui2_A           47 TPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE  125 (244)
T ss_dssp             HHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            44555666788888888777 55556677889999999999999999999999999999988 78999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHH
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKY  128 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~  128 (216)
                      ++++|+++|++++.+|..|+||||+|+.
T Consensus       126 ~v~~Ll~~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A          126 VVEALVELGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            9999999999999999999999999984

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.79  E-value=8.4e-22  Score=160.70  Aligned_cols=149  Identities=12%  Similarity=-0.032  Sum_probs=120.6

Q ss_pred             ccccccccCCCCcccccCCCCCCCC---CCCCccchHHHHHHHHcCCHHHHHHHHhCCCCC---CccCCCCchHHHHHHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELT---VPENLDSTMQLLFMACSGDVKGVEDLLNEGIDV---NSIDLDGRTALHIAAC   95 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~a~~   95 (216)
                      ..++..+..|..+.++.++..+...   ...+..+.||||+|+..|+.++|++|+++|+++   +..+.. .||||+|+.
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~  172 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAE  172 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHH
Confidence            4455566788888888877766522   234557899999999999999999999999752   222222 899999999


Q ss_pred             cCCHHHHHHHHhCCCCCCC--CCCCCCCHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCchhcccCCCCcccccchhhHH
Q 027950           96 EGHVEVVKLLLSKKANIDA--RDRWGSTAAADAK-YYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLELQ  172 (216)
Q Consensus        96 ~~~~~~~~~Ll~~g~~~~~--~~~~g~t~L~~a~-~~g~~~~~~~Ll~~g~~~~~~g~t~l~~a~~~~~~~~~~~~~~~l  172 (216)
                      .|+.+++++|+++|++++.  .+..|.||||+|+ ..|+.+++++|+++|++    |.||+++|+..+..+    +++++
T Consensus       173 ~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~----~~taL~~Aa~~g~~e----vv~lL  244 (376)
T 2aja_A          173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM----LAYAEIHEFEYGEKY----VNPFI  244 (376)
T ss_dssp             TTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH----HHHHHHCTTTTTTTT----HHHHH
T ss_pred             CCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc----cchHHHHHHHCCCHH----HHHHH
Confidence            9999999999999999887  7888999999999 99999999999998753    899999999988765    46777


Q ss_pred             HHhhcCC
Q 027950          173 VRKADGI  179 (216)
Q Consensus       173 ~~~g~~~  179 (216)
                      +..|+++
T Consensus       245 ~~~ga~~  251 (376)
T 2aja_A          245 ARHVNRL  251 (376)
T ss_dssp             HHHHHHH
T ss_pred             HhcCccc
Confidence            7777654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=4e-19  Score=120.92  Aligned_cols=96  Identities=36%  Similarity=0.409  Sum_probs=88.7

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhccc
Q 027950           81 SIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVAN  157 (216)
Q Consensus        81 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~  157 (216)
                      .+|..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++..   |.|||++|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999998654   999999999


Q ss_pred             CCCCcccccchhhHHHHhhcCCC
Q 027950          158 PREVPEYELNPLELQVRKADGIT  180 (216)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~g~~~~  180 (216)
                      ..+..+    +++++++.|++++
T Consensus        84 ~~~~~~----~~~~Ll~~ga~~n  102 (115)
T 2l6b_A           84 KNGHHE----IVKLLDAKGADVN  102 (115)
T ss_dssp             TTTCHH----HHHHHHTTSSSHH
T ss_pred             HCCCHH----HHHHHHHcCCCCC
Confidence            988554    5889999999986

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.70  E-value=2.3e-17  Score=111.46  Aligned_cols=84  Identities=26%  Similarity=0.340  Sum_probs=75.5

Q ss_pred             CccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcc
Q 027950           80 NSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVA  156 (216)
Q Consensus        80 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a  156 (216)
                      ...+..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..   |.||||+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            345778999999999999999999999999999999999999999999999999999999999998755   99999999


Q ss_pred             cCCCCcc
Q 027950          157 NPREVPE  163 (216)
Q Consensus       157 ~~~~~~~  163 (216)
                      +..+..+
T Consensus        98 ~~~~~~~  104 (110)
T 2zgd_A           98 IDNGNED  104 (110)
T ss_dssp             HHHTCHH
T ss_pred             HHcCCHH
Confidence            9877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-16
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-14
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	5e-15
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-15
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-14
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-08
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	4e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-10
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-11
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-10
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-10
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	2e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	8e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-07
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-06
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 3e-23
 Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 1/97 (1%)

Query: 58  LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L +A   G +  V++LL  G   N  ++   T LH+AA  GH EV K LL  KA ++A+ 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 63

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPM 153
           +   T    A   G+  +  +L    A          
Sbjct: 64  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH 100

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.2 bits (194), Expect = 6e-18
 Identities = 30/84 (35%), Positives = 45/84 (53%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   +  G++K V+ LL    DVN+    G + LH AA +GH ++V LLL   A+ +   
Sbjct: 301 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 360

Query: 117 RWGSTAAADAKYYGNVEVYNILKA 140
             G+T  A AK  G + V ++LK 
Sbjct: 361 SDGTTPLAIAKRLGYISVTDVLKV 384

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (172), Expect = 5e-15
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 88  TALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV-- 145
           T LH+A+  GH+ +VK LL + A+ +  +    T    A   G+ EV   L    AKV  
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 146 -PKTKRTPMTVA 156
             K  +TP+  A
Sbjct: 62  KAKDDQTPLHCA 73

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (164), Expect = 6e-14
 Identities = 25/84 (29%), Positives = 36/84 (42%)

Query: 55  MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 114
             L   A  G V+  E LL      N+   +G T LH+A    ++++VKLLL +  +  +
Sbjct: 134 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 193

Query: 115 RDRWGSTAAADAKYYGNVEVYNIL 138
               G T    A     VEV   L
Sbjct: 194 PAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (153), Expect = 2e-12
 Identities = 32/122 (26%), Positives = 40/122 (32%), Gaps = 33/122 (27%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI---- 112
           L   A +G  +  + LL     VN+   D +T LH AA  GH  +VKLLL   AN     
Sbjct: 37  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLAT 96

Query: 113 -----------------------------DARDRWGSTAAADAKYYGNVEVYNILKARGA 143
                                            + G T    A  YG V V  +L  R A
Sbjct: 97  TAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDA 156

Query: 144 KV 145
             
Sbjct: 157 HP 158

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 7e-12
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 3/98 (3%)

Query: 76  GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 135
                 +   G T LH+AA  G V V +LLL + A+ +A  + G T    A ++ N+++ 
Sbjct: 122 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIV 181

Query: 136 NILKARGAKV---PKTKRTPMTVANPREVPEYELNPLE 170
            +L  RG           TP+ +A  +   E   + L+
Sbjct: 182 KLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 219

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-10
 Identities = 36/98 (36%), Positives = 48/98 (48%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   A    V+    LL  G   N+  + G T LH+AA EGH E+V LLLSK+AN +  +
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 261

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 154
           + G T        G+V V ++L   G  V  T R   T
Sbjct: 262 KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYT 299

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 4e-10
 Identities = 28/103 (27%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L  +A  G V   + L+  G+ V++    G T LH+A+  G++++VK LL  +A+++A+ 
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 327

Query: 117 RWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
           + G +    A   G+ ++  +L   GA          TP+ +A
Sbjct: 328 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 370

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 5e-08
 Identities = 24/85 (28%), Positives = 36/85 (42%)

Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 109
             +    L       ++  V+ LL  G   +S   +G T LHIAA +  VEV + LL   
Sbjct: 162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG 221

Query: 110 ANIDARDRWGSTAAADAKYYGNVEV 134
            + +A    G T    A   G+ E+
Sbjct: 222 GSANAESVQGVTPLHLAAQEGHAEM 246

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 2e-18
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 70  EDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKY 128
             LL+ G DVN     G+T L +A  + H+ +V+ LL ++   I+  D  G TA   A  
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVE 262

Query: 129 YGNVEVYNILKARGAKV 145
               ++  +L  RGA  
Sbjct: 263 LKLKKIAELLCKRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 2e-16
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 57  LLFMACSGDVKGVEDLL-NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDAR 115
           L+       +  V+ LL  E I++N  D DG+TAL +A      ++ +LL  + A+ D  
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

Query: 116 D 116
           D
Sbjct: 283 D 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 6e-11
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 56  QLLFMAC-SGDVKGVEDLLNEGIDVNSIDLD-GRTALHIAACEGHVEVVKLLLSKKANID 113
            LL  A  + DV  V+ LL  G +VN  + + G T LH A      ++V+LLL   A+  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 154
            R + G+T    A   G+V++  +  ++GA V +      T
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFT 107

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 6e-10
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 84  LDGRTALHIAACEGHVEVVKLLLSKKANIDARD-RWGSTAAADAKYYGNVEV 134
           ++    L  A     V++V+ LL   AN++ ++   G T   +A      ++
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI 54

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 79  VNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYGNV----E 133
              +   G TAL  AA +GHVEV+K+LL +  A+++A D  G  A   A    +      
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 134 VYNILKARGAKV---PKTKRTPMTVAN 157
           + ++L   GA V    +  +TP+ +A 
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAV 227

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 4e-09
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 9/109 (8%)

Query: 57  LLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAAC----EGHVEVVKLLLSKKAN 111
           L+  A  G V+ ++ LL+E G DVN+ D  GR AL  A           +  LLL   A+
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 112 IDARDRWGSTAAADAKYYGNVEVYNIL-KARGAKV---PKTKRTPMTVA 156
           ++ R   G T    A    ++ +   L +    ++       +T + +A
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.8 bits (182), Expect = 8e-17
 Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 1/67 (1%)

Query: 76  GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 135
           G + +  D DG+T + +AA EG +EVV  L+ + A+++A D    TA   A+   +  + 
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV 270

Query: 136 NIL-KAR 141
           +I  + R
Sbjct: 271 DIFDRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 65.1 bits (157), Expect = 2e-13
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 61  ACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK--------ANI 112
             +G     E +  E +++       RT LH  A     E  + L+  +        A++
Sbjct: 9   EAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV 67

Query: 113 DARDRWGSTAAADAKYYGNVEVYN 136
           +A D   +T    A       +  
Sbjct: 68  NAMDCDENTPLMLAVLARRRRLVA 91

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.4 bits (150), Expect = 2e-12
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL 106
           ++  A  G ++ V  L+ +G  V ++D    TA  +A    H  +V +  
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 1e-05
 Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 4/102 (3%)

Query: 59  FMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDR 117
             A     KG +   +     +S    GRTALH AA   ++ +VK L+ +K +N D +D 
Sbjct: 160 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 219

Query: 118 WGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
            G T    A   G +EV   L  +GA V     T  T   +A
Sbjct: 220 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLA 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 144
           +    LH  A  G   + + +  +  NI    R   T         + E    L    AK
Sbjct: 1   ESPIKLHTEAA-GSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.3 bits (82), Expect = 0.002
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 9/94 (9%)

Query: 58  LFMACS-GDVKGVEDLLNE--------GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
           L    S    +  EDL+          G DVN++D D  T L +A       +V  L+  
Sbjct: 37  LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA 96

Query: 109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARG 142
            A+    ++   +A   A    +  +   +    
Sbjct: 97  GADPTIYNKSERSALHQAAANRDFGMMVYMLNST 130

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 72.2 bits (176), Expect = 1e-15
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 6/96 (6%)

Query: 57  LLFMAC----SGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
           + F+A     S  +  +  LL     V  I  +   A  +AA  GH+ V+  L       
Sbjct: 93  ICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE 152

Query: 113 DARDR--WGSTAAADAKYYGNVEVYNILKARGAKVP 146
                      A   A   G++ V N L        
Sbjct: 153 IMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 188

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 67.2 bits (163), Expect = 5e-14
 Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 6/108 (5%)

Query: 49  ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH---VEVVKLL 105
           +N++   QLL   C        +      D +   +       +AA  G    ++ + LL
Sbjct: 56  KNMEQVRQLL---CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLL 112

Query: 106 LSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPM 153
           L+    +         A   A   G++ V N L               
Sbjct: 113 LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE 160

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.7 bits (120), Expect = 3e-08
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 5/56 (8%)

Query: 57  LLFMACSGDVKGVEDLLNEG-----IDVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
           L+       +  +  LL+           +I  D    L +A   G+     LLLS
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.2 bits (111), Expect = 4e-07
 Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 6/97 (6%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDLD--GRTALHIAACEGHVEVVKLLLSKKANID- 113
             +A  +G +  +  L           +      A  +AA  GH+ V+  L         
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 114 --ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT 148
              +          A   G+  V N L      +   
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA 226

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 10/87 (11%), Positives = 19/87 (21%), Gaps = 10/87 (11%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKA-----N 111
              ++    V  +                    L     E  ++ ++ LLS         
Sbjct: 255 AFKLSNPDGVFDLVT-----KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 309

Query: 112 IDARDRWGSTAAADAKYYGNVEVYNIL 138
                   +     A   GN     +L
Sbjct: 310 TATIPGDANELLRLALRLGNQGACALL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 7/98 (7%), Positives = 25/98 (25%), Gaps = 14/98 (14%)

Query: 67  KGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA 126
            G + +        +   +   A  ++  +G  ++V        +   +  +        
Sbjct: 233 YGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLV------TKSECLQGFYMLRNLIRR 286

Query: 127 KYYGNVEVYNILKARGA--------KVPKTKRTPMTVA 156
                ++    L +            +P      + +A
Sbjct: 287 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLA 324

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 11/110 (10%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSI---DLDGRTALHIAACEGHVEVVKLLLSKKANID 113
               A +G +  +  L        +      +       A   GH  V+  LL     + 
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 224

Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPE 163
             +            YG   V   +     ++ K       ++NP  V +
Sbjct: 225 YAEIHEFE-------YGEKYVNPFIARHVNRL-KEMHDAFKLSNPDGVFD 266

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 69.7 bits (169), Expect = 5e-15
 Identities = 22/66 (33%), Positives = 34/66 (51%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L   A  G  + ++ L+    DVN  D DG T LH AA  G  E  ++L+    +++A +
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262

Query: 117 RWGSTA 122
           + G TA
Sbjct: 263 KVGQTA 268

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 61.3 bits (147), Expect = 6e-12
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 82  IDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYN 136
           +  D       A   G  E V  LL + A+I+  +  G TA   A    NV++  
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVK 90

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.5 bits (132), Expect = 6e-10
 Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 72  LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN 131
           L +  I+       G TALH+AA +G+ EV+KLL+  + +++ +D  G T    A ++G 
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

Query: 132 VEVYNILKARGAKV---PKTKRTPMTVAN 157
            E   IL      +    K  +T   VA+
Sbjct: 245 EEACRILVENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.1 bits (131), Expect = 8e-10
 Identities = 34/114 (29%), Positives = 50/114 (43%)

Query: 29  RQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRT 88
           R    +     PV          D     L    SGD + V  LL  G D+N  ++DG T
Sbjct: 16  RWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLT 75

Query: 89  ALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG 142
           ALH A  + +V++VK L+   ANI+  D  G      A   G +++   L ++G
Sbjct: 76  ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG 129

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.4 bits (111), Expect = 3e-07
 Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAA--CEGHVEVVKLLLSKKANI 112
           L   A  G  +    L+    D+ +++  G+TA  +A     G++E ++    KK N+
Sbjct: 236 LHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ----KKQNL 289

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.7 bits (169), Expect = 6e-15
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 9/120 (7%)

Query: 46  TVPENLDSTMQLLFMACSGDVKGVEDLL-NEGIDVN-SIDLDGRTALHIAACEGHVEVVK 103
              E   S  Q   ++    ++ V D   N  +++N  +D  G T LH      ++E+VK
Sbjct: 65  RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVK 124

Query: 104 LLLSKKANIDARDRWGSTAAADAKYYGN-------VEVYNILKARGAKVPKTKRTPMTVA 156
            L+   +N    D  G +    A    N         + + L           RT +   
Sbjct: 125 HLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHI 184

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.2 bits (165), Expect = 2e-14
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 66  VKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTA 122
           ++ ++        +N+ D +G T L+IAA  G++ +V  LL   A+    ++ G   
Sbjct: 239 LENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 295

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 72  LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK---KANIDARDRWGSTAAADAKY 128
           +  +   + S   +  +  +    E    +++ L  K      ++A+D  G T    A  
Sbjct: 209 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 268

Query: 129 YGNVEVYNILKARGAKV---PKTKRTPMTVA 156
            GN+ + + L   GA      K+   P+   
Sbjct: 269 LGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 10/38 (26%), Positives = 16/38 (42%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAA 94
           L   A  G++  V+ LL+ G D    +  G   +   A
Sbjct: 263 LNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 1e-13
 Identities = 32/100 (32%), Positives = 50/100 (50%)

Query: 55  MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA 114
             L   A +G  + V+ LL +G  VN+++ +G T LH AA +   E+  +LL   AN DA
Sbjct: 72  SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA 131

Query: 115 RDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMT 154
           +D + +TA   A   GN+++ +IL    A          T
Sbjct: 132 KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNT 171

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 3e-13
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 3/110 (2%)

Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK 109
           N +    L + A     +    LL  G + ++ D    TA+H AA +G+++++ +LL  K
Sbjct: 100 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK 159

Query: 110 ANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKV---PKTKRTPMTVA 156
           A+ + +D  G+T    A     VE   +L ++GA +    K ++TP+ VA
Sbjct: 160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 209

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 5e-11
 Identities = 28/127 (22%), Positives = 44/127 (34%), Gaps = 34/127 (26%)

Query: 53  STMQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEG-------------- 97
           S + +  +A SG ++ +++ +          D D RTALH A   G              
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 62

Query: 98  -------------------HVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNIL 138
                                E+VK LL K A ++A ++ G T    A      E+  +L
Sbjct: 63  VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVML 122

Query: 139 KARGAKV 145
              GA  
Sbjct: 123 LEGGANP 129

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 1e-10
 Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 50  NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLL 106
           + +    L        V+  + L+++G  +   + + +T L +A   G   ++K ++
Sbjct: 166 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 2e-10
 Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           +   A  G++K +  LL      N  D +G T LH+A  E  VE  KLL+S+ A+I   +
Sbjct: 140 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN 199

Query: 117 RWGSTAAADAKYYGNVEVYNIL 138
           +   T    AK  G   +   +
Sbjct: 200 KEEKTPLQVAK-GGLGLILKRM 220

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 2e-13
 Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 59  FMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
               +     +E LL  G D  +    GRT L  A    +  + +LL +  A  +  D
Sbjct: 198 LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP-EPED 254

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.6 bits (153), Expect = 8e-13
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 80  NSIDLDGRTALHIAACEGHVEVVKLLLSKKAN---IDARDRWGSTAAADAKYYGNVEVYN 136
             +  DG TALH+A    H   +  LL   A    +D ++  G TA   A   G      
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVE 62

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.0 bits (149), Expect = 2e-12
 Identities = 21/61 (34%), Positives = 29/61 (47%)

Query: 87  RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVP 146
           RT LH+A       V++LLL   A+  AR   G T    A    N  +  +L+A GA  P
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

Query: 147 K 147
           +
Sbjct: 253 E 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 2e-09
 Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 58  LFMAC-SGDVKGVEDLLNEGIDVNSIDL---DGRTALHIAACEGHVEVVKLLLSKKANID 113
           L +A        ++ LL        +DL    G+TALH+AA  G    V+ L +  A + 
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72

Query: 114 ARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKTKRTPMTVANPREVPEYELNPLEL 171
             +R G TA   A          +L       P+         +    P+    P  +
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAV 130

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 3e-13
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 55  MQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANID 113
              L  A   +   +  LL + G +VN+    G +ALH A+  G + +V+ L+   A+  
Sbjct: 145 RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 114 ARDRWGSTAAADAKYYGNVEV 134
            ++    T    A+    +++
Sbjct: 205 LKNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (143), Expect = 9e-12
 Identities = 9/52 (17%), Positives = 21/52 (40%)

Query: 52  DSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVK 103
             +  L   +  G +  V  L+  G D +  +    T L +A     +++++
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (141), Expect = 2e-11
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)

Query: 85  DGRTALHIAACEGHVEVVKLLLS----KKANIDARDRWGSTAAADAKYY 129
           DG T LHIA  +G++  V  L++        +D  +    T    A   
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 8e-06
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 58  LFMACS-GDVKGVEDLLNE----GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANI 112
           L +A   G++  V  L+N     G +++  +   +T LH+A       VV+LL++  A+ 
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 113 DARDRWGSTAAADAKYYGNVEVYNILKARGA 143
            A DR G TAA  A  + +      L    A
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAA 97

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 58.3 bits (139), Expect = 4e-11
 Identities = 12/50 (24%), Positives = 21/50 (42%)

Query: 56  QLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLL 105
            L   A  G  +  + LL+   +    D   R    +A+   H ++V+LL
Sbjct: 159 PLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 57.1 bits (136), Expect = 8e-11
 Identities = 21/82 (25%), Positives = 33/82 (40%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD 116
           L + A   + + V  LL    + ++ D    T L +AA EG  E  K LL   AN +  D
Sbjct: 127 LHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITD 186

Query: 117 RWGSTAAADAKYYGNVEVYNIL 138
                    A    + ++  +L
Sbjct: 187 HMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.4 bits (129), Expect = 7e-10
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 69  VEDLLNEGIDVNS-IDLDGRTALHIAACEGHVEVVKLL 105
           + DLL +G ++N+ +D  G T+LH+AA     +  K L
Sbjct: 5   ISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.8 bits (91), Expect = 9e-05
 Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 100 EVVKLLLSKKANIDAR-DRWGSTAAADAKYYGNVEVYNIL 138
           +V+  LL++ A ++A  D+ G T+   A  +   +    L
Sbjct: 3   QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 8e-11
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 85  DGRTALHIAACEGHV----EVVKLLLSKKANIDARDRWGSTAAADAKYY 129
           DG + LH+A          EV++ +    A ++ ++    T    A   
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 6e-10
 Identities = 10/55 (18%), Positives = 16/55 (29%)

Query: 57  LLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
           L       +   V  LL  G DVN +   G +   +        + + L      
Sbjct: 149 LHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 8e-09
 Identities = 14/60 (23%), Positives = 26/60 (43%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAK 144
           +GRTALH+A    + ++V LLL   A+++     G +         +  +   L     +
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 5/47 (10%)

Query: 57 LLFMACS-GDVKGVEDLL----NEGIDVNSIDLDGRTALHIAACEGH 98
           L +A    +     +++     +   +N  +   +T LH+A     
Sbjct: 5  FLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (131), Expect = 2e-10
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 88  TALHIAACEGHVEVVKLLLSKKANIDARDRWG 119
             L  AA  G +E +  LL    N++A++ +G
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFG 34

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-08
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 79  VNSIDLDGRTALHIAACEGHVEVVKLLLSK 108
           V   +  G TA  +A   G  EVV L+ + 
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.003
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 58 LFMACS-GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH 98
          L  A + GD++ +  LL   ++VN+ +  GRTAL +      
Sbjct: 5  LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.2 bits (131), Expect = 4e-10
 Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 88  TALHIAACEGHVEVVKLLL-SKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG 142
             LH A  E     V+ LL SK + +  +D+ G      +  +   E+ + L ++ 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (122), Expect = 9e-09
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 59  FMACSGDVKGVEDLL-NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKAN 111
                G       L+   G + + +D  G  A  +A    + +V K  L+   +
Sbjct: 178 HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 8e-08
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 58 LFMAC-SGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHV 99
          L  AC   +   V++LL+     +   D DGR  LH +      
Sbjct: 4  LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 1e-07
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 79  VNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAADAKYYGNVEVYNI 137
           VN  D  G T L  A  EGH +   LL+ K  A  D  D  G+ A   A    N +V   
Sbjct: 165 VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKF 221

Query: 138 LKARGA 143
                 
Sbjct: 222 FLNNVV 227

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (128), Expect = 5e-10
 Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 43/135 (31%)

Query: 53  STMQLLFMAC-SGDVKGVEDLLNEGIDVN------SIDLDGRTALHIAA---CEGHVEVV 102
           + +  L  A  + D+ G+     +G+D+       +      TALH+A        + +V
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 103 KLLLSKKANI---------------------------------DARDRWGSTAAADAKYY 129
             L+    N+                                 +  +  G T    AK  
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 124

Query: 130 GNVEVYNILKARGAK 144
            +     +L    + 
Sbjct: 125 KHEHCEELLTQALSG 139

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 5e-09
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 3/46 (6%)

Query: 70  EDLLNEGIDVNSIDL-DGRTA--LHIAACEGHVEVVKLLLSKKANI 112
           + L+  G  V ++   D +TA        EG+ +  + L   +  +
Sbjct: 84  KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 2e-05
 Identities = 4/31 (12%), Positives = 14/31 (45%)

Query: 88  TALHIAACEGHVEVVKLLLSKKANIDARDRW 118
             L  ++ EG  ++V+ ++ +  +    +  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE 33

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 8e-09
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 78  DVNSIDLDGRTALHIAACEGHVEVVKLLLS 107
           D++  D  G T L +A   G  ++V +L  
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 6e-07
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 86  GRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGST 121
               L  AA  G V+ V+ LL ++  + DA +R+G T
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKT 38

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 76  GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 135
           G DVN  D  G   +H+A  EGH  VV  L   ++++  RD  G T    A   G  ++ 
Sbjct: 91  GADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLV 149

Query: 136 NIL 138
           +IL
Sbjct: 150 DIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.2 bits (118), Expect = 1e-08
 Identities = 12/51 (23%), Positives = 24/51 (47%)

Query: 55  MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLL 105
             L +       + VE L+  G DV++     +TA  I+   G+ ++ ++L
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.0 bits (107), Expect = 4e-07
 Identities = 23/64 (35%), Positives = 36/64 (56%)

Query: 76  GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVY 135
           G DVN+ D+   TALH A    H EVV+LL+   A++  + ++  TA   +   GN ++ 
Sbjct: 90  GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149

Query: 136 NILK 139
            IL+
Sbjct: 150 EILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (105), Expect = 8e-07
 Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 85  DGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGST 121
           D    L  AA  G  + V++L++  A     D  G++
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTS 36

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 2e-06
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 86  GRTALHIAACEGHVEVVKLLLS 107
           GR  + +A   GH +V + L +
Sbjct: 102 GRLPVDLAEELGHRDVARYLRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-06
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 88  TALHIAACEGHVEVVKLLLSKKANIDARDRW 118
             L  AA  G VE V+ LL   AN +A + +
Sbjct: 5   DWLATAAARGRVEEVRALLEAGANPNAPNSY 35

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.3 bits (79), Expect = 0.001
 Identities = 5/31 (16%), Positives = 12/31 (38%)

Query: 88  TALHIAACEGHVEVVKLLLSKKANIDARDRW 118
                A   G ++ VK  ++K  +++     
Sbjct: 4   KEFMWALKNGDLDEVKDYVAKGEDVNRTLEG 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.88
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.88
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.87
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.87
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.85
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.84
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.83
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.83
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.82
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.82
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.78
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.76
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.75
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.69

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.9e-27  Score=161.06  Aligned_cols=107  Identities=30%  Similarity=0.440  Sum_probs=102.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 027950           54 TMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVE  133 (216)
Q Consensus        54 ~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~  133 (216)
                      .|||++|+..|+.++|+.|+++|++++.++..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCC---CCCchhcccCCC
Q 027950          134 VYNILKARGAKVPKT---KRTPMTVANPRE  160 (216)
Q Consensus       134 ~~~~Ll~~g~~~~~~---g~t~l~~a~~~~  160 (216)
                      ++++|+++|++++..   |.||||+|....
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~~~~  112 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATDNQA  112 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCSSTT
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHhHHH
Confidence            999999999999765   999999996543

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.8e-26  Score=176.49  Aligned_cols=177  Identities=23%  Similarity=0.178  Sum_probs=143.2

Q ss_pred             ccccccccCCCCcccccCCCCCC---CCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCC
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDE---LTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGH   98 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~   98 (216)
                      ++++.+...++.+.++.++..+.   .....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++
T Consensus        11 t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~   90 (255)
T d1oy3d_          11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRA   90 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCc
Confidence            33444455666666665543332   233456778999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCC-----------------------------------------------CCCCCCCCCCCHHHHHHHcCC
Q 027950           99 VEVVKLLLSKKA-----------------------------------------------NIDARDRWGSTAAADAKYYGN  131 (216)
Q Consensus        99 ~~~~~~Ll~~g~-----------------------------------------------~~~~~~~~g~t~L~~a~~~g~  131 (216)
                      .+++++|++.+.                                               +++.++..|.||||+|+..++
T Consensus        91 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~  170 (255)
T d1oy3d_          91 HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKD  170 (255)
T ss_dssp             HHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTC
T ss_pred             hHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccc
Confidence            999998876532                                               224567789999999999999


Q ss_pred             HHHHHHHHHCCCCCCCC----CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHH
Q 027950          132 VEVYNILKARGAKVPKT----KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQ  198 (216)
Q Consensus       132 ~~~~~~Ll~~g~~~~~~----g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~  198 (216)
                      .+++++|++++++.+..    |.||||+|+..+..+    ++++|++.|++++   ..+.||++.|      .++++|++
T Consensus       171 ~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~----~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~  246 (255)
T d1oy3d_         171 AEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS----VLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA  246 (255)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred             cccccchhcccccccccccccccccccccccccHHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            99999999999988643    999999999888655    5788999999887   5578999998      78999999


Q ss_pred             cCCC
Q 027950          199 AGSF  202 (216)
Q Consensus       199 ~g~~  202 (216)
                      .|+.
T Consensus       247 ~Ga~  250 (255)
T d1oy3d_         247 HGAP  250 (255)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            9986

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=169.47  Aligned_cols=174  Identities=26%  Similarity=0.305  Sum_probs=102.2

Q ss_pred             cccccCCCCcccccCCCCC-CCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHH
Q 027950           25 FSFGRQSSLDPIRRSPVQD-ELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVK  103 (216)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~  103 (216)
                      +.++..|+++.++..+... ......+..|+||||+|+..|+.+++++++..+......+..+.++++.++..++.++++
T Consensus         8 ~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   87 (223)
T d1uoha_           8 CNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVK   87 (223)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhH
Confidence            4455566666665544333 333444666777777777777777776666665555555555556666666666666666


Q ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC
Q 027950          104 LLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT  180 (216)
Q Consensus       104 ~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~  180 (216)
                      +|++.|++++..|..|.||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..+    ..+++...+.+++
T Consensus        88 ~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~----~~~~L~~~~~~i~  163 (223)
T d1uoha_          88 ALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK----MIHILLYYKASTN  163 (223)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred             HHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcc----hhhhhccccceee
Confidence            666666666666666666666666666666666666666665433   556666665554333    2444555555543


Q ss_pred             ---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          181 ---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       181 ---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                         ..+.||++.|      .++++|++.|+.
T Consensus       164 ~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad  194 (223)
T d1uoha_         164 IQDTEGNTPLHLACDEERVEEAKLLVSQGAS  194 (223)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             eccCCCCceeccccccCcHHHHHHHHHCCCC
Confidence               3455565555      455566665553

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=169.35  Aligned_cols=166  Identities=25%  Similarity=0.243  Sum_probs=148.7

Q ss_pred             cccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHH
Q 027950           21 NNMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      ..+++.++..+..+.++.+.............+.++++.++..++.+++++|+++|++++..+..|.||||+|+..|+.+
T Consensus        38 ~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e  117 (223)
T d1uoha_          38 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE  117 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHH
Confidence            35556666788888888877777777777888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhc
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKAD  177 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~  177 (216)
                      ++++|+++|++++..+..|.||||+|+..++.+++++|++.+.++|..   |.||||.|+..+..+    ++++|++.|+
T Consensus       118 ~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~----~v~~LL~~Ga  193 (223)
T d1uoha_         118 IAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVE----EAKLLVSQGA  193 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTC
T ss_pred             HHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHH----HHHHHHHCCC
Confidence            999999999999999999999999999999999999999999999765   999999999988654    5888999999


Q ss_pred             CCC---CCCCcchHHH
Q 027950          178 GIT---KAWPVPLIFV  190 (216)
Q Consensus       178 ~~~---~~~~~~l~~~  190 (216)
                      +++   ..+.||++.|
T Consensus       194 d~~~~d~~g~tpl~~A  209 (223)
T d1uoha_         194 SIYIENKEEKTPLQVA  209 (223)
T ss_dssp             CSCCCCTTSCCHHHHC
T ss_pred             CCCCCCCCCCCHHHHH
Confidence            987   4577888777

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.3e-25  Score=152.27  Aligned_cols=119  Identities=28%  Similarity=0.267  Sum_probs=105.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 027950           54 TMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVE  133 (216)
Q Consensus        54 ~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~  133 (216)
                      .++|+.||..|+.++|+.|+++|+++|.+|..|.||||+|+..++.+++++|+++|++++..|..|+||||+|+..|+.+
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHCCCCCCCC----CCCchhcc--cCCCCcccccchhhHHHHhh
Q 027950          134 VYNILKARGAKVPKT----KRTPMTVA--NPREVPEYELNPLELQVRKA  176 (216)
Q Consensus       134 ~~~~Ll~~g~~~~~~----g~t~l~~a--~~~~~~~~~~~~~~~l~~~g  176 (216)
                      ++++|+++|++++..    ++||++++  +..++.+    ++++|+..+
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~e----iv~~L~~~~  126 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ----CSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC----HHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHH----HHHHHHhHH
Confidence            999999999999753    78887665  4455444    466666544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=7.2e-25  Score=167.43  Aligned_cols=149  Identities=22%  Similarity=0.165  Sum_probs=129.5

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCC---CCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGID---VNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADA  126 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a  126 (216)
                      +.+|.||||+||..|+.+++++|+++|++   ++.++..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A   85 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLA   85 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhh
Confidence            46799999999999999999999999887   666788999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHCCCC-----------------------------------------------C---CCCCCCchhcc
Q 027950          127 KYYGNVEVYNILKARGAK-----------------------------------------------V---PKTKRTPMTVA  156 (216)
Q Consensus       127 ~~~g~~~~~~~Ll~~g~~-----------------------------------------------~---~~~g~t~l~~a  156 (216)
                      +..++.+++++|++.+..                                               +   +..|.||||+|
T Consensus        86 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A  165 (255)
T d1oy3d_          86 CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA  165 (255)
T ss_dssp             TTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHH
T ss_pred             hccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccc
Confidence            999999999999765432                                               1   12289999999


Q ss_pred             cCCCCcccccchhhHHHHhhcCCC----CCCCcchHHH------HHHHHHHHcCCC
Q 027950          157 NPREVPEYELNPLELQVRKADGIT----KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       157 ~~~~~~~~~~~~~~~l~~~g~~~~----~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      +..+..+    +++++++.+++..    ..+.||+|.|      .++++|++.|+.
T Consensus       166 ~~~~~~~----~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad  217 (255)
T d1oy3d_         166 VIHKDAE----MVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD  217 (255)
T ss_dssp             HHTTCHH----HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ccccccc----cccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC
Confidence            9888655    4788888887775    4578999987      789999999875

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.4e-25  Score=151.64  Aligned_cols=111  Identities=25%  Similarity=0.303  Sum_probs=102.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHcCC
Q 027950           53 STMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGS-TAAADAKYYGN  131 (216)
Q Consensus        53 ~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~a~~~g~  131 (216)
                      +.++||+|+..|+.+++++|+++|+++|.++..|.||+|+|+ .|+.+++++|+++|++++..+..+. ||||+|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            457899999999999999999999999999999999999775 7999999999999999999998876 69999999999


Q ss_pred             HHHHHHHHHCCCCCCCC---CCCchhcccCCCCccc
Q 027950          132 VEVYNILKARGAKVPKT---KRTPMTVANPREVPEY  164 (216)
Q Consensus       132 ~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~  164 (216)
                      .+++++|+++|++++..   |+||||+|+..+..++
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~  117 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDV  117 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHH
T ss_pred             ccccccccccccccccccCCCCCHHHHHHHcCCHHH
Confidence            99999999999998765   9999999998886553

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.1e-24  Score=151.22  Aligned_cols=141  Identities=26%  Similarity=0.319  Sum_probs=124.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 027950           55 MQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV  134 (216)
Q Consensus        55 t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~  134 (216)
                      ++||+||..|+.++|+.|+++|++++..|..|.||||+|+ .++.+++++|++.|++++..+..|.++++.++..+...+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7999999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhc-CC---CCCCCcchHHH------HHHHHHHHcC
Q 027950          135 YNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKAD-GI---TKAWPVPLIFV------HYVILLRQAG  200 (216)
Q Consensus       135 ~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~-~~---~~~~~~~l~~~------~~~~~l~~~g  200 (216)
                      ++++++++.+++..   |.+|+++|+..+..+.    +++++.+++ +.   +..+.||++.|      .++++|++.|
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~----~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRV----VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccccc----cccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999999988654   9999999998876553    667777775 33   35678999988      6788887765

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=1.8e-24  Score=166.76  Aligned_cols=169  Identities=18%  Similarity=0.210  Sum_probs=124.4

Q ss_pred             cCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHH--------HhCCCCCCccCCCCchHHHHHHHcCCHH
Q 027950           29 RQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDL--------LNEGIDVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~L--------l~~~~~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      ..++.+ +...+.+...+......|.||||+||..|+.++|+.|        ++.|+++|.+|..|.||||+|+..|+.+
T Consensus        10 ~~~~~~-~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~   88 (277)
T d2fo1e1          10 AAGSYA-ITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR   88 (277)
T ss_dssp             HHSSSC-CCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             hCCCHH-HHHHHHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccc
Confidence            334444 4444445555555556799999999999999888666        5679999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC---C---------------------------------
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA---K---------------------------------  144 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~---~---------------------------------  144 (216)
                      ++++|+++|++++.++..|.||+++|+..++.+++.++...+.   .                                 
T Consensus        89 iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (277)
T d2fo1e1          89 LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK  168 (277)
T ss_dssp             HHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccc
Confidence            9999999999999999999999999999998888777754421   0                                 


Q ss_pred             --------------CCCCCCCchhcccCCCCcccccchhhH-HHHhhcCC---CCCCCcchHHH------HHHHHHHHcC
Q 027950          145 --------------VPKTKRTPMTVANPREVPEYELNPLEL-QVRKADGI---TKAWPVPLIFV------HYVILLRQAG  200 (216)
Q Consensus       145 --------------~~~~g~t~l~~a~~~~~~~~~~~~~~~-l~~~g~~~---~~~~~~~l~~~------~~~~~l~~~g  200 (216)
                                    .+..|.|||++++..+..+.    .+. +...+.+.   +..+.||++.|      .++++|++.|
T Consensus       169 ~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~----~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~g  244 (277)
T d2fo1e1         169 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI----VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG  244 (277)
T ss_dssp             TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHH----HHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             cccccccccccccccccCCCCccccccccccccc----cccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCc
Confidence                          01116777777766554432    222 33344443   35677888877      5778888887


Q ss_pred             CC
Q 027950          201 SF  202 (216)
Q Consensus       201 ~~  202 (216)
                      +.
T Consensus       245 ad  246 (277)
T d2fo1e1         245 AS  246 (277)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=8.9e-24  Score=150.30  Aligned_cols=129  Identities=22%  Similarity=0.297  Sum_probs=80.7

Q ss_pred             HHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Q 027950           56 QLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEV  134 (216)
Q Consensus        56 ~L~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~  134 (216)
                      .|+.||..|+.++|+.|++. +++++..|..|.||||+|+ .++.+++++|++.+.+++..+..|.+|++.++..++.++
T Consensus         5 ~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~   83 (156)
T d1bd8a_           5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDT   83 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccccccccccccccccccccccc
Confidence            36666666676666666654 5566666666666766654 356666666666666666666666666776666666666


Q ss_pred             HHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          135 YNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       135 ~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      +++++++|+++|..   |.||||+|+..+..+    ++++++ .|++++   ..+.||++.|
T Consensus        84 ~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~----i~~~L~-~~~~~~~~d~~G~TpL~~A  140 (156)
T d1bd8a_          84 LKVLVEHGADVNVPDGTGALPIHLAVQEGHTA----VVSFLA-AESDLHRRDARGLTPLELA  140 (156)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHH----HHHHHH-TTSCTTCCCTTSCCHHHHH
T ss_pred             cccccccccccccccCCCCeeecccccccccc----cccccc-ccccccccCCCCCCHHHHH
Confidence            66666666666543   666776666655443    244443 455543   4455666665

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=4.5e-23  Score=154.90  Aligned_cols=174  Identities=16%  Similarity=0.123  Sum_probs=126.2

Q ss_pred             cccccCCCCcccccCCCC-CCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCc---cCCCCch------------
Q 027950           25 FSFGRQSSLDPIRRSPVQ-DELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNS---IDLDGRT------------   88 (216)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~---~~~~g~t------------   88 (216)
                      +.+...++.+.++.++.. +......+.+|.||||+|+..|+.+++++|+++|++++.   .+..|.+            
T Consensus         5 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (229)
T d1ixva_           5 HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE   84 (229)
T ss_dssp             HHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccc
Confidence            334445666666554442 334455677889999999999999999999988877653   2333444            


Q ss_pred             -----------------------HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CC
Q 027950           89 -----------------------ALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARG-AK  144 (216)
Q Consensus        89 -----------------------~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g-~~  144 (216)
                                             +++.++..++.+++++|++.|.+.+..+..|+||||+|+..|+.+++++|++.+ .+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~  164 (229)
T d1ixva_          85 VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA  164 (229)
T ss_dssp             HHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC
T ss_pred             cccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccc
Confidence                                   444555555566667777777777778888999999999999999999999887 45


Q ss_pred             CCC---CCCCchhcccCCCCcccccchhhHHHH-hhcCCC---CCCCcchHHH---HHHHHHHHcCCC
Q 027950          145 VPK---TKRTPMTVANPREVPEYELNPLELQVR-KADGIT---KAWPVPLIFV---HYVILLRQAGSF  202 (216)
Q Consensus       145 ~~~---~g~t~l~~a~~~~~~~~~~~~~~~l~~-~g~~~~---~~~~~~l~~~---~~~~~l~~~g~~  202 (216)
                      +|.   .|.||||+|+..+..+    ++++|+. .|++++   ..+.||++.|   .++++|++.|+.
T Consensus       165 in~~d~~g~TpLh~A~~~~~~~----~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         165 VNWQDKQGWTPLFHALAEGHGD----AAVLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNVVD  228 (229)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHH----HHHHHHHHHCCCSCCCCTTSCCTGGGCSCHHHHHHHHHHCCC
T ss_pred             ccccccccCCchhhhcccccHH----HHHHHHHhcCCCCCCcCCCCCCHHHHHhhHHHHHHHHHcCCC
Confidence            554   3999999999887655    4677775 588875   5667888887   678888888874

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.7e-22  Score=142.52  Aligned_cols=147  Identities=20%  Similarity=0.235  Sum_probs=126.7

Q ss_pred             ccccccccCCCCcccccCCCCC-CCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQD-ELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~  100 (216)
                      ..++.++..|+++.++.++.+. ......+..|.||||+|+ .|+.+++++|++++.+++..+..|.+|++.++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            3456667788999888876653 444455788999999886 58899999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHH
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVR  174 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~  174 (216)
                      +++++++.|++++.+|..|.||||+|++.|+.+++++|+ .|++++..   |+||||+|+..+..+    ++++|++
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~----iv~~Ll~  154 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQD----LVDILQG  154 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHH----HHHHHHT
T ss_pred             ccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHH----HHHHHHh
Confidence            999999999999999999999999999999999999887 68888654   999999999988765    3566554

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.88  E-value=6.4e-22  Score=153.64  Aligned_cols=149  Identities=28%  Similarity=0.335  Sum_probs=119.7

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHc
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYY  129 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~  129 (216)
                      +.++.|+|++||..|+.++|++|+++|+++|..|..|.||||+|+..|+.+++++|+++|++....+..+.+||++++..
T Consensus        37 ~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          37 KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            44577899999999999999999999999999999999999999999999999999999998888888888999999999


Q ss_pred             CCHHHHHHHHHCCCCCCC---C----------------------------------------------------------
Q 027950          130 GNVEVYNILKARGAKVPK---T----------------------------------------------------------  148 (216)
Q Consensus       130 g~~~~~~~Ll~~g~~~~~---~----------------------------------------------------------  148 (216)
                      ++.++++.|+++|+..+.   .                                                          
T Consensus       117 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (291)
T d1s70b_         117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA  196 (291)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCT
T ss_pred             cccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccccccc
Confidence            999999998888765322   1                                                          


Q ss_pred             --CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          149 --KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       149 --g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                        |.|||+.|+..+..    ++++.++..|++++   ..+.||+|.|      .++++|++.|+.
T Consensus       197 ~~g~t~L~~a~~~~~~----~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad  257 (291)
T d1s70b_         197 KSGGTALHVAAAKGYT----EVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD  257 (291)
T ss_dssp             TTCCCHHHHHHHHTCH----HHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCCCChhhHHHHcCCh----hhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence              44555555544433    34677788888775   4677888887      678888888875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.3e-22  Score=150.69  Aligned_cols=160  Identities=20%  Similarity=0.167  Sum_probs=134.2

Q ss_pred             CCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCC----
Q 027950           39 SPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDA----  114 (216)
Q Consensus        39 ~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~----  114 (216)
                      ....+......+..|.||||+|+..|+.+++++|++.|++++..+..|.|||++++..++.++++.++..+.....    
T Consensus        25 ~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  104 (221)
T d1iknd_          25 VKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSIL  104 (221)
T ss_dssp             ----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGG
T ss_pred             HHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccc
Confidence            3344444555677899999999999999999999999999999999999999999999999999999988655432    


Q ss_pred             --CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCc
Q 027950          115 --RDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT----KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPV  185 (216)
Q Consensus       115 --~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~----g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~  185 (216)
                        ....|.||||.|+..++.+++.+|+..|+.++..    |.||||+|+..+..+    ++++|++.|++++   ..+.|
T Consensus       105 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~----~v~~Ll~~gad~~~~~~~G~t  180 (221)
T d1iknd_         105 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD----LVSLLLKCGADVNRVTYQGYS  180 (221)
T ss_dssp             GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHTTTCCSCCCCTTCCC
T ss_pred             cccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH----HHHHHHhcCCcccccCCCCCC
Confidence              3456889999999999999999999999988643    899999999988665    4788999999986   66889


Q ss_pred             chHHH------HHHHHHHHcCCC
Q 027950          186 PLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       186 ~l~~~------~~~~~l~~~g~~  202 (216)
                      |++.|      ++++++.+.+..
T Consensus       181 pl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         181 PYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             GGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCc
Confidence            99987      677778777654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=4.2e-22  Score=141.26  Aligned_cols=121  Identities=23%  Similarity=0.285  Sum_probs=93.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHhCCCCCCcc------CCCCchHHHHHHHc---CCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 027950           55 MQLLFMACSGDVKGVEDLLNEGIDVNSI------DLDGRTALHIAACE---GHVEVVKLLLSKKANIDARDRWGSTAAAD  125 (216)
Q Consensus        55 t~L~~a~~~g~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~a~~~---~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  125 (216)
                      ..|+.|+..+++..+..++..|++++.+      +..|.||||+|+..   ++.+++++|+++|++++.+|..|+||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            3456677788888888888887776543      45678888888864   56788888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCC
Q 027950          126 AKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGI  179 (216)
Q Consensus       126 a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~  179 (216)
                      |+..|+.+++++|+++|++++..   |.||||+|+..+..++    ++++++.++..
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i----~~~L~~~~~~~  140 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC----EELLTQALSGR  140 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHHHTTC
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHH----HHHHHHhCCCC
Confidence            88888888888888888887654   8888888888776553    56666666543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.9e-23  Score=145.61  Aligned_cols=149  Identities=20%  Similarity=0.168  Sum_probs=132.4

Q ss_pred             cccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHH
Q 027950           23 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV  102 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  102 (216)
                      .++.++..++.+.++.++..+......+..|.||||+|+ .|+.+++++|+++|++++..+..|.++++.++..++.+++
T Consensus         4 ~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~   82 (156)
T d1ihba_           4 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL   82 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccccc
Confidence            345566788899999988888777778899999999875 7999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCC---CCCchhcccCCCCcccccchhhHHHHhh
Q 027950          103 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGA-KVPKT---KRTPMTVANPREVPEYELNPLELQVRKA  176 (216)
Q Consensus       103 ~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~-~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g  176 (216)
                      ++++..+.+++..+..|.+|+|+|+..++.+++++|+++++ +++.+   |.||||+|+..+..+    ++++|+++|
T Consensus        83 ~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~----iv~~Ll~~G  156 (156)
T d1ihba_          83 QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE----VVSLMQANG  156 (156)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH----HHHHHHhcC
Confidence            99999999999999999999999999999999999999887 55443   999999999988666    477777765

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.2e-21  Score=138.31  Aligned_cols=132  Identities=26%  Similarity=0.299  Sum_probs=100.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHH
Q 027950           54 TMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVE  133 (216)
Q Consensus        54 ~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~  133 (216)
                      .|||+.|++.|+.++|++|+++|++++ .+..|.||||+|+..++.++++.++.........+..+.++++.++...+.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            478888888888888888888888766 4777888888888888888888888777766667777778888888888888


Q ss_pred             HHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          134 VYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       134 ~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      +++++.++|++.+..   |.||||+|+..+..+    +++++++.|++++   ..+.||++.|
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~----iv~~ll~~gad~~~~d~~g~Tpl~~A  140 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWATEHNHQE----VVELLIKYGADVHTQSKFCKTAFDIS  140 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             eeecccccCCccccccccCchHHHhhhhcchhh----eeeeccccccCCcccCCCCCCHHHHH
Confidence            888888888776543   888888888777554    4677777787775   4566666666

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=8.9e-23  Score=158.55  Aligned_cols=163  Identities=21%  Similarity=0.208  Sum_probs=140.7

Q ss_pred             ccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHH
Q 027950           24 RFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVK  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~  103 (216)
                      ++.+...|+.+.++.++..+......+.+|.||||+|+..|+.+++++|+++|.+.+..+..+.+||+.++..++.++++
T Consensus        44 l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~  123 (291)
T d1s70b_          44 FLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE  123 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhh
Confidence            34456688999999888887766677889999999999999999999999999998888889999999999999999999


Q ss_pred             HHHhCCCCCCC------------------------------------------------------------CCCCCCCHH
Q 027950          104 LLLSKKANIDA------------------------------------------------------------RDRWGSTAA  123 (216)
Q Consensus       104 ~Ll~~g~~~~~------------------------------------------------------------~~~~g~t~L  123 (216)
                      .|++.|+..+.                                                            .+..|.|||
T Consensus       124 ~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  203 (291)
T d1s70b_         124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTAL  203 (291)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHH
T ss_pred             cccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChh
Confidence            99988765433                                                            334577889


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          124 ADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       124 ~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      |+|+..|+.+++++|+++|+++|..   |.||||+|+..+..+    ++++|+++|++++   ..+.||++.|
T Consensus       204 ~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~----iv~lLl~~Gadv~~~d~~G~TaL~~A  272 (291)
T d1s70b_         204 HVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE----ACRILVENLCDMEAVNKVGQTAFDVA  272 (291)
T ss_dssp             HHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCTTTSC
T ss_pred             hHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999999998765   999999999988655    5789999999987   4567888887

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.6e-22  Score=143.39  Aligned_cols=96  Identities=23%  Similarity=0.214  Sum_probs=90.1

Q ss_pred             CCccchHHHHHHHHc---CCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH
Q 027950           49 ENLDSTMQLLFMACS---GDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAAD  125 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~---g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  125 (216)
                      .+..|.||||+|+..   ++.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  120 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  120 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHH
Confidence            355689999999974   78899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHCCCC
Q 027950          126 AKYYGNVEVYNILKARGAK  144 (216)
Q Consensus       126 a~~~g~~~~~~~Ll~~g~~  144 (216)
                      |++.|+.+++++|++.++.
T Consensus       121 A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         121 AKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHhCCC
Confidence            9999999999999987654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.4e-22  Score=151.86  Aligned_cols=147  Identities=18%  Similarity=0.122  Sum_probs=123.8

Q ss_pred             cchHHHHHHHHcCCHHH----HHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 027950           52 DSTMQLLFMACSGDVKG----VEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  127 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~----v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~  127 (216)
                      +|.||||+|+..|+.++    ++.+...++++|.+|..|.||||+|+..|+.+++++|++.|++++..|..|.|||++++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            58999999999998655    45556678999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHCCCCCCC---------CCCCchhcccCCCCcccccchhhHHHHhhcCCC----CCCCcchHHH----
Q 027950          128 YYGNVEVYNILKARGAKVPK---------TKRTPMTVANPREVPEYELNPLELQVRKADGIT----KAWPVPLIFV----  190 (216)
Q Consensus       128 ~~g~~~~~~~Ll~~g~~~~~---------~g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~----~~~~~~l~~~----  190 (216)
                      ..++.++++.+++.+.....         .|.||++.|+..+..+    .+.++...|...+    ..+.||+|.|    
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~----~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g  156 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG----IVELLVSLGADVNAQEPCNGRTALHLAVDLQ  156 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHH----HHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChh----heeeecccCcccccccccCCCCccccccccc
Confidence            99999999999998876532         2899999998877544    4667778887765    4578999998    


Q ss_pred             --HHHHHHHHcCCC
Q 027950          191 --HYVILLRQAGSF  202 (216)
Q Consensus       191 --~~~~~l~~~g~~  202 (216)
                        .++++|++.|+.
T Consensus       157 ~~~~v~~Ll~~gad  170 (221)
T d1iknd_         157 NPDLVSLLLKCGAD  170 (221)
T ss_dssp             CHHHHHHHHTTTCC
T ss_pred             cHHHHHHHHhcCCc
Confidence              788999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=6.1e-22  Score=139.84  Aligned_cols=141  Identities=26%  Similarity=0.277  Sum_probs=124.6

Q ss_pred             cccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHH
Q 027950           23 MRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVV  102 (216)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~  102 (216)
                      .+..+++.|+.+.++.++..+.. ...+..|.||||+|+..++.+.+..++.........+..+.++++.++...+.+++
T Consensus         5 ~L~~Aa~~g~~~~v~~LL~~ga~-~~~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (153)
T d1awcb_           5 KLLEAARAGQDDEVRILMANGAP-FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIV   83 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCC-CCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCC-cccccCCCccccccccccccccccccccccccccccccccccccccccccccceee
Confidence            34455677888888888777664 44688899999999999999999999988777666777888999999999999999


Q ss_pred             HHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCccc
Q 027950          103 KLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY  164 (216)
Q Consensus       103 ~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~  164 (216)
                      +++...|++++.++..|+||||+|+..|+.+++++|+++|++++..   |.||||+|+..+..++
T Consensus        84 ~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~ei  148 (153)
T d1awcb_          84 EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             HHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             ecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999999999999999999999999654   9999999999887664

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.8e-21  Score=143.10  Aligned_cols=89  Identities=27%  Similarity=0.271  Sum_probs=75.2

Q ss_pred             cchHHHHHHHHcCCHHHHHHHH----hCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 027950           52 DSTMQLLFMACSGDVKGVEDLL----NEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  127 (216)
Q Consensus        52 ~~~t~L~~a~~~g~~~~v~~Ll----~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~  127 (216)
                      +|.||||+||..|+.++++.|+    +.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..+.++++.|.
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            5899999999999999998887    478999999999999999999999999999999999988877777777777776


Q ss_pred             HcCCHHHHHHHHH
Q 027950          128 YYGNVEVYNILKA  140 (216)
Q Consensus       128 ~~g~~~~~~~Ll~  140 (216)
                      ..++.++++.+..
T Consensus        82 ~~~~~~~~~~~~~   94 (228)
T d1k1aa_          82 EHRSPTCLRALLD   94 (228)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             ccccccchhhhhh
Confidence            6666665555443

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.7e-22  Score=159.36  Aligned_cols=139  Identities=26%  Similarity=0.339  Sum_probs=76.1

Q ss_pred             CCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH
Q 027950           48 PENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAK  127 (216)
Q Consensus        48 ~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~  127 (216)
                      ..+..+.||+++|+..++.++++.++..+...+..+..|.||++.|+..++.+++++|++.|++++..+..+.||||.++
T Consensus       226 ~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~  305 (408)
T d1n11a_         226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS  305 (408)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHH
T ss_pred             ccCCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhc
Confidence            33444555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          128 YYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       128 ~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      ..+..++++++++.|+++|.+   |.||||.|+..+..+    ++++|+++|++++   ..+.||++.|
T Consensus       306 ~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~----iv~~Ll~~GAd~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD----IVTLLLKNGASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             HSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             ccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            555555555555555555433   555555555554333    3455555555553   3345555554

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=7.2e-21  Score=149.04  Aligned_cols=135  Identities=12%  Similarity=0.062  Sum_probs=94.2

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCH-------HHHHHHHhCCCCCCCCCCCCCC
Q 027950           49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHV-------EVVKLLLSKKANIDARDRWGST  121 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~-------~~~~~Ll~~g~~~~~~~~~g~t  121 (216)
                      .+..|.||||+||..|+.++|++|+++|++++.+|..|.||||.|+..++.       ++++++..   .+...|..|+|
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t  179 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRT  179 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhcccccCC
Confidence            367899999999999999999999999999999999999999999987642       34444433   34555677778


Q ss_pred             HHHHHHHcCC----HH--------HHHHHHHCCCC-------------------------------------CC---CCC
Q 027950          122 AAADAKYYGN----VE--------VYNILKARGAK-------------------------------------VP---KTK  149 (216)
Q Consensus       122 ~L~~a~~~g~----~~--------~~~~Ll~~g~~-------------------------------------~~---~~g  149 (216)
                      |||+++..+.    ..        ++.++...+..                                     +|   ..|
T Consensus       180 ~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G  259 (301)
T d1sw6a_         180 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNG  259 (301)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTS
T ss_pred             HHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCC
Confidence            8887765443    11        22333333221                                     22   337


Q ss_pred             CCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          150 RTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       150 ~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      +||||+|+..+..+    ++++|++.|++++   ..+.||++.|
T Consensus       260 ~TpLh~A~~~g~~~----iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         260 DTCLNIAARLGNIS----IVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             CCHHHHHHHHCCHH----HHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             CCHHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence            78888887777544    4777778888775   4566666543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2e-22  Score=138.13  Aligned_cols=118  Identities=23%  Similarity=0.271  Sum_probs=105.6

Q ss_pred             ccccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCc-hHHHHHHHcCCHH
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGR-TALHIAACEGHVE  100 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~-t~L~~a~~~~~~~  100 (216)
                      +.++..+..|..+.++.++..+......+..|.||+|.| ..|+.+++++|+++|++++..+..+. ||||+|+..|+.+
T Consensus         5 ~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~   83 (125)
T d1bi7b_           5 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLD   83 (125)
T ss_dssp             THHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            445666778899999998887766667788899999966 47999999999999999999887765 6999999999999


Q ss_pred             HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Q 027950          101 VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKA  140 (216)
Q Consensus       101 ~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~  140 (216)
                      ++++|+++|++++.+|..|+||||+|++.|+.+++++|++
T Consensus        84 ~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          84 TLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.84  E-value=2.3e-20  Score=137.95  Aligned_cols=138  Identities=26%  Similarity=0.249  Sum_probs=118.4

Q ss_pred             CCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHH----------------------------
Q 027950           49 ENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVE----------------------------  100 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~----------------------------  100 (216)
                      .+.+|.||||+||..|+.+++++|++.|++++.++..+.++++.++..++..                            
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3567999999999999999999999999999998888888888877655433                            


Q ss_pred             ------HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhH
Q 027950          101 ------VVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLEL  171 (216)
Q Consensus       101 ------~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~  171 (216)
                            ..+.|...+++++..+..|+||+++++..+...+++.+++++.+++..   |.||||.|+..+..+    .+++
T Consensus        99 ~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~----~v~~  174 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYE----ASKA  174 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHH
T ss_pred             cccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHH----HHHH
Confidence                  466777888899999999999999999999999999999999998655   999999999988665    4788


Q ss_pred             HHHhhcCCC---CCCCcchHHH
Q 027950          172 QVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       172 l~~~g~~~~---~~~~~~l~~~  190 (216)
                      |++.|++++   ..+.||++.|
T Consensus       175 Ll~~gad~n~~d~~g~Tpl~~A  196 (209)
T d1ot8a_         175 LLDNFANREITDHMDRLPRDVA  196 (209)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHH
T ss_pred             HHHCCCCCCCcCCCCCCHHHHH
Confidence            899999986   4566777766

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.84  E-value=6.8e-21  Score=146.46  Aligned_cols=172  Identities=17%  Similarity=0.174  Sum_probs=133.7

Q ss_pred             ccccccccCCCCcccccC--------CCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHH
Q 027950           22 NMRFSFGRQSSLDPIRRS--------PVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIA   93 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a   93 (216)
                      +++..++..+..+.++.+        +..+......+.+|.||||+|+..|+.+++++|+++|++++.++..|.|||++|
T Consensus        35 T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a  114 (277)
T d2fo1e1          35 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA  114 (277)
T ss_dssp             CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccch
Confidence            444444557777777654        233444556688999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCC-----------------------------------------------CCCCCCCCCCCHHHHH
Q 027950           94 ACEGHVEVVKLLLSKKA-----------------------------------------------NIDARDRWGSTAAADA  126 (216)
Q Consensus        94 ~~~~~~~~~~~Ll~~g~-----------------------------------------------~~~~~~~~g~t~L~~a  126 (216)
                      +..++.+++.++...+.                                               ..+..+..|+||||++
T Consensus       115 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~  194 (277)
T d2fo1e1         115 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA  194 (277)
T ss_dssp             HHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHH
T ss_pred             hhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccc
Confidence            99999888777755321                                               1123345689999999


Q ss_pred             HHcCCHHHHHHHH-HCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH------HHH
Q 027950          127 KYYGNVEVYNILK-ARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV------HYV  193 (216)
Q Consensus       127 ~~~g~~~~~~~Ll-~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~------~~~  193 (216)
                      +..++.+++++++ ..+.+++..   |.||||+|+..+..+    ++++|++.|++++   ..+.||++.|      .++
T Consensus       195 ~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~----iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv  270 (277)
T d2fo1e1         195 AQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE----VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIV  270 (277)
T ss_dssp             HSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHH----HHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccccccccccCCCCCCHHHHHHHcCCHH----HHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            9999999988755 667776543   999999999888655    5888999999985   5677888887      556


Q ss_pred             HHHH
Q 027950          194 ILLR  197 (216)
Q Consensus       194 ~~l~  197 (216)
                      ++|.
T Consensus       271 ~lL~  274 (277)
T d2fo1e1         271 DIFD  274 (277)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-21  Score=135.19  Aligned_cols=119  Identities=25%  Similarity=0.234  Sum_probs=105.5

Q ss_pred             ccccccCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHH
Q 027950           24 RFSFGRQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVK  103 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~  103 (216)
                      ++.....|..+.++.++..+......+.+|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.++++
T Consensus         5 L~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~   84 (130)
T d1ycsb1           5 LLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCK   84 (130)
T ss_dssp             HHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHH
Confidence            44556688889999888888777777889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCCCCC-CCCCHHHHH--HHcCCHHHHHHHHHCC
Q 027950          104 LLLSKKANIDARDR-WGSTAAADA--KYYGNVEVYNILKARG  142 (216)
Q Consensus       104 ~Ll~~g~~~~~~~~-~g~t~L~~a--~~~g~~~~~~~Ll~~g  142 (216)
                      +|+++|++++..+. .++||++++  ...|+.+++++|++.+
T Consensus        85 ~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          85 FLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            99999999998775 588887665  5778899999998753

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=2.5e-21  Score=131.28  Aligned_cols=100  Identities=19%  Similarity=0.166  Sum_probs=90.8

Q ss_pred             chHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcc
Q 027950           87 RTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPE  163 (216)
Q Consensus        87 ~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~  163 (216)
                      .|||++|+..|+.+++++|++.|++++..+..|+||||+|+..|+.+++++|+++|+++|..   |+||||+|+..+..+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            48999999999999999999999999999999999999999999999999999999999765   999999999988655


Q ss_pred             cccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          164 YELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       164 ~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                          ++++|++.|++++   ..+.||++.|
T Consensus        83 ----~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          83 ----CVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             ----HHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             ----hhhhhhcccccceeeCCCCCCHHHHH
Confidence                5889999999986   5677777655

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=4.6e-20  Score=149.09  Aligned_cols=151  Identities=20%  Similarity=0.291  Sum_probs=127.1

Q ss_pred             cCCCCcccccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhC
Q 027950           29 RQSSLDPIRRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSK  108 (216)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~  108 (216)
                      ..+..+.++............+..|.||++.|+..++.+++++|+++|++++..+..+.||||.++..++.++++++++.
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~  319 (408)
T d1n11a_         240 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQH  319 (408)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHT
T ss_pred             HhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeeccc
Confidence            34445555555555555666677899999999999999999999999999999888999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC
Q 027950          109 KANIDARDRWGSTAAADAKYYGNVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT  180 (216)
Q Consensus       109 g~~~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~  180 (216)
                      |++++.+|..|.||||+|++.|+.+++++|+++|+++|..   |+||||+|+..+..++ +++++.+...++...
T Consensus       320 g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~i-v~~L~~~~~~~~~~~  393 (408)
T d1n11a_         320 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISV-TDVLKVVTDETSFVL  393 (408)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHH-HHHHHHHCCCCSSCC
T ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHH-HHHHHHHHhcccccc
Confidence            9999999999999999999999999999999999999765   9999999998887653 344556656555554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=7.8e-20  Score=136.93  Aligned_cols=125  Identities=18%  Similarity=0.112  Sum_probs=111.9

Q ss_pred             CCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCHHHH
Q 027950           47 VPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKK-ANIDARDRWGSTAAAD  125 (216)
Q Consensus        47 ~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~  125 (216)
                      ...+..+.++++.++..++.++++.|++.+.+.+..+..|.||||+|+..|+.+++++|++.+ .+++.+|..|+||||+
T Consensus        99 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~  178 (229)
T d1ixva_          99 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFH  178 (229)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHH
T ss_pred             cccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhh
Confidence            344566889999999999999999999999999989999999999999999999999999986 7889999999999999


Q ss_pred             HHHcCCHHHHHHHHH-CCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcC
Q 027950          126 AKYYGNVEVYNILKA-RGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADG  178 (216)
Q Consensus       126 a~~~g~~~~~~~Ll~-~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~  178 (216)
                      |+..|+.+++++|++ .|++++..   |+|||++|+..+       +.++++++|+|
T Consensus       179 A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~~~-------~~~~Ll~~g~d  228 (229)
T d1ixva_         179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ-------VKKFFLNNVVD  228 (229)
T ss_dssp             HHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSCHH-------HHHHHHHHCCC
T ss_pred             hcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhhHH-------HHHHHHHcCCC
Confidence            999999999999996 59998765   999999998542       46888898875

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=8.1e-20  Score=140.89  Aligned_cols=130  Identities=24%  Similarity=0.236  Sum_probs=113.8

Q ss_pred             CccchHHHHHHHHcCCHHHHHHHHhC-CCCCCccCCCCchHHHHHHHc----CCHHHHHHHHhCCCCCCCCCCCCCCHHH
Q 027950           50 NLDSTMQLLFMACSGDVKGVEDLLNE-GIDVNSIDLDGRTALHIAACE----GHVEVVKLLLSKKANIDARDRWGSTAAA  124 (216)
Q Consensus        50 ~~~~~t~L~~a~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~a~~~----~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  124 (216)
                      ...|.||||+|+..|+.+++++|+++ |++++..+..|.++++.+...    +...++++|++.|++++.++..|.||||
T Consensus       145 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~  224 (285)
T d1wdya_         145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI  224 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccc
Confidence            44578999999999999999999975 789999998998887776543    3456899999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHH-CCCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCCCCC
Q 027950          125 DAKYYGNVEVYNILKA-RGAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGITKAW  183 (216)
Q Consensus       125 ~a~~~g~~~~~~~Ll~-~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~~~~  183 (216)
                      +|+..|+.+++++|++ .|+++|..   |.||||+|+..+..+    ++++|++.|++++..+
T Consensus       225 ~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~e----iv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         225 LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK----IAELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHHSSCSCCSS
T ss_pred             hhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCccc
Confidence            9999999999999997 48998764   999999999988665    5889999999998765

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.82  E-value=2.6e-22  Score=160.32  Aligned_cols=127  Identities=17%  Similarity=0.087  Sum_probs=104.1

Q ss_pred             CCccchHHHHHHHHcCCHHHHHH---HHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCCCHH
Q 027950           49 ENLDSTMQLLFMACSGDVKGVED---LLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARD--RWGSTAA  123 (216)
Q Consensus        49 ~~~~~~t~L~~a~~~g~~~~v~~---Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~--~~g~t~L  123 (216)
                      .+..|.||||+||..|+.+++++   |++.|+++|..+..|.||||+|+..|+.+++++|++.|++++..+  ..|+|||
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF  165 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChh
Confidence            35578999999999999887765   678999999999999999999999999999999999999998765  3589999


Q ss_pred             HHHHHcCCHHHHHHHHHCCCCCCC---C---CCCchhcccCCCCcccccchhhHHHHhhcCC
Q 027950          124 ADAKYYGNVEVYNILKARGAKVPK---T---KRTPMTVANPREVPEYELNPLELQVRKADGI  179 (216)
Q Consensus       124 ~~a~~~g~~~~~~~Ll~~g~~~~~---~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~  179 (216)
                      |+|+..|+.+++++|++.|++.+.   .   +.||++.|+..++.+    ++++|++.|+++
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~----iv~~Ll~~ga~~  223 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHN----VINFLLDCPVML  223 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHH----HHHHHTTSHHHH
T ss_pred             HHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHH----HHHHHHhCCCCc
Confidence            999999999999999999987522   1   667888888888665    467777766544

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.1e-19  Score=132.74  Aligned_cols=163  Identities=18%  Similarity=0.123  Sum_probs=121.9

Q ss_pred             ccccccCCCCcccccCC----CCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCH
Q 027950           24 RFSFGRQSSLDPIRRSP----VQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHV   99 (216)
Q Consensus        24 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~   99 (216)
                      +..+...+..+.++.++    ..+......+..|.||||+|+..|+.++++.|+++|++.+.....|.++++.|...++.
T Consensus         7 Lh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~   86 (228)
T d1k1aa_           7 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP   86 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccc
Confidence            33444566666554432    23344445677899999999999999999999999999988888888888888888777


Q ss_pred             HHHHHHHhCCC-------------------------------------C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Q 027950          100 EVVKLLLSKKA-------------------------------------N-IDARDRWGSTAAADAKYYGNVEVYNILKAR  141 (216)
Q Consensus       100 ~~~~~Ll~~g~-------------------------------------~-~~~~~~~g~t~L~~a~~~g~~~~~~~Ll~~  141 (216)
                      ++++.+.....                                     + .......+.++++.|+..+...+++.++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~  166 (228)
T d1k1aa_          87 TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH  166 (228)
T ss_dssp             HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhh
Confidence            77665544211                                     1 112344688999999999999999999998


Q ss_pred             CCCCCCC---CCCchhcccCCCCcccccchhhHHHHhhcCCC---CCCCcchHHH
Q 027950          142 GAKVPKT---KRTPMTVANPREVPEYELNPLELQVRKADGIT---KAWPVPLIFV  190 (216)
Q Consensus       142 g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~~g~~~~---~~~~~~l~~~  190 (216)
                      |.+++..   |.||||+|+..+..+    ++++|++.|++++   ..+.||++.|
T Consensus       167 ~~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~Gad~n~~d~~G~TpL~~A  217 (228)
T d1k1aa_         167 GANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSSLKNCHNDTPLMVA  217 (228)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCTTTTC
T ss_pred             ccccccccccCcchHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            8887654   889999998887655    4788888888876   5577888776

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.2e-18  Score=131.11  Aligned_cols=177  Identities=23%  Similarity=0.214  Sum_probs=113.8

Q ss_pred             ccccccccCCCCcccccCCCCCCC-CCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCcc------------------
Q 027950           22 NMRFSFGRQSSLDPIRRSPVQDEL-TVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSI------------------   82 (216)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~------------------   82 (216)
                      +++..+...++.+.++.++..+.. +...+..|.||||+|+..|+.+++++|++.+...+..                  
T Consensus         7 ~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (285)
T d1wdya_           7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK   86 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCcc
Confidence            334445556677777666555433 2333445777777777777777777777654322100                  


Q ss_pred             ----------------------------------------------------------CCCCchHHHHHHHcCCHHHHHH
Q 027950           83 ----------------------------------------------------------DLDGRTALHIAACEGHVEVVKL  104 (216)
Q Consensus        83 ----------------------------------------------------------~~~g~t~L~~a~~~~~~~~~~~  104 (216)
                                                                                ...|.||||+|+..|+.+++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  166 (285)
T d1wdya_          87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI  166 (285)
T ss_dssp             HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHH
T ss_pred             ccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHH
Confidence                                                                      0124556666666666666666


Q ss_pred             HHhC-CCCCCCCCCCCCCHHHHHHHcC----CHHHHHHHHHCCCCCCCC---CCCchhcccCCCCcccccchhhHHHH-h
Q 027950          105 LLSK-KANIDARDRWGSTAAADAKYYG----NVEVYNILKARGAKVPKT---KRTPMTVANPREVPEYELNPLELQVR-K  175 (216)
Q Consensus       105 Ll~~-g~~~~~~~~~g~t~L~~a~~~g----~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~~~~~~~~l~~-~  175 (216)
                      |++. |++++..+..|.++...+...+    ..+++++|+++|++++.+   |.||||+|+..+..+    ++++++. .
T Consensus       167 Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~----~v~~lL~~~  242 (285)
T d1wdya_         167 LLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG----LVQRLLEQE  242 (285)
T ss_dssp             HHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHH----HHHHHHHSS
T ss_pred             HHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHH----HHHHHHHcC
Confidence            6644 5666666666666655544433    234666777777777654   899999998887554    4666765 4


Q ss_pred             hcCCC---CCCCcchHHH------HHHHHHHHcCCC
Q 027950          176 ADGIT---KAWPVPLIFV------HYVILLRQAGSF  202 (216)
Q Consensus       176 g~~~~---~~~~~~l~~~------~~~~~l~~~g~~  202 (216)
                      |.+++   ..+.||++.|      .++++|++.|+.
T Consensus       243 g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd  278 (285)
T d1wdya_         243 HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  278 (285)
T ss_dssp             SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC
T ss_pred             CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            77775   4688999988      788999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.76  E-value=6.6e-21  Score=152.12  Aligned_cols=121  Identities=15%  Similarity=0.052  Sum_probs=95.4

Q ss_pred             cccccCCCCccc---ccCCCCCCCCCCCCccchHHHHHHHHcCCHHHHHHHHhCCCCCCccC--CCCchHHHHHHHcCCH
Q 027950           25 FSFGRQSSLDPI---RRSPVQDELTVPENLDSTMQLLFMACSGDVKGVEDLLNEGIDVNSID--LDGRTALHIAACEGHV   99 (216)
Q Consensus        25 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~a~~~~~~   99 (216)
                      +..+..|..+.+   ..+...+......+.+|.||||+||..|+.++|++|+++|++++..+  ..|.||||+|+..|+.
T Consensus        95 ~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~  174 (346)
T d2ajaa1          95 FVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL  174 (346)
T ss_dssp             HHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhH
Confidence            334556655443   44555555556678889999999999999999999999999988765  4689999999999999


Q ss_pred             HHHHHHHhCCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Q 027950          100 EVVKLLLSKKANID---ARDRWGSTAAADAKYYGNVEVYNILKARGAKV  145 (216)
Q Consensus       100 ~~~~~Ll~~g~~~~---~~~~~g~t~L~~a~~~g~~~~~~~Ll~~g~~~  145 (216)
                      +++++|++.|++..   ..+..+.||++.|+..|+.+++++|+++|+++
T Consensus       175 ~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         175 HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             HHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            99999999987653   23345678888899999999999999998764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=9.4e-18  Score=123.66  Aligned_cols=114  Identities=34%  Similarity=0.320  Sum_probs=98.8

Q ss_pred             ccchHHHHHHHHcCCHHHHHHHHhCCCCCCccCCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Q 027950           51 LDSTMQLLFMACSGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYG  130 (216)
Q Consensus        51 ~~~~t~L~~a~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g  130 (216)
                      ..+.++.+.+.........+.|...+++++.++..|.|||++++..+..++++.++..+.+++..|..|.||||+|+..|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g  167 (209)
T d1ot8a_          88 HDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREG  167 (209)
T ss_dssp             TTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             ccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhcccc
Confidence            33445555555555666777888888999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHCCCCCCCC---CCCchhcccCCCCccc
Q 027950          131 NVEVYNILKARGAKVPKT---KRTPMTVANPREVPEY  164 (216)
Q Consensus       131 ~~~~~~~Ll~~g~~~~~~---g~t~l~~a~~~~~~~~  164 (216)
                      +.+++++|+++|++++..   |+||||+|+..+..++
T Consensus       168 ~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~i  204 (209)
T d1ot8a_         168 SYEASKALLDNFANREITDHMDRLPRDVASERLHHDI  204 (209)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            999999999999998655   9999999999887653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=4.5e-17  Score=127.14  Aligned_cols=85  Identities=22%  Similarity=0.160  Sum_probs=72.3

Q ss_pred             hCCCCCCcc-CCCCchHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC-------HHHHHHHHHCCCCC
Q 027950           74 NEGIDVNSI-DLDGRTALHIAACEGHVEVVKLLLSKKANIDARDRWGSTAAADAKYYGN-------VEVYNILKARGAKV  145 (216)
Q Consensus        74 ~~~~~~~~~-~~~g~t~L~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~a~~~g~-------~~~~~~Ll~~g~~~  145 (216)
                      ..+.++|.. |..|.||||+|+..|+.+++++|++.|++++.+|..|+||||.|+..++       .++++++.+.....
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~  173 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE  173 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEE
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhc
Confidence            346788865 8899999999999999999999999999999999999999999998664       35667766666666


Q ss_pred             CCCCCCchhcccC
Q 027950          146 PKTKRTPMTVANP  158 (216)
Q Consensus       146 ~~~g~t~l~~a~~  158 (216)
                      |..|+||||.++.
T Consensus       174 d~~g~t~lh~~~~  186 (301)
T d1sw6a_         174 DSMNRTILHHIII  186 (301)
T ss_dssp             CTTCCCHHHHHHH
T ss_pred             ccccCCHHHHHHH
Confidence            7889999997653