Citrus Sinensis ID: 027990

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLNISDSFNAPIREENGGFCKFDSVVQVNRPTTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKKIVVQPAAGDDCRSDCDSSSSVIDDGDDCVFSSSLFRKVLPFDLNLPPPPLSPMMTLMDGGDDLRLCL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEEHHccccccccEEEcccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccHHHccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcc
Coil and Loop (DISEMBL)
mrrgrstaaapskpiekrtgpeaspdiryrgvrkrpwgrfaaeirdpwkkTRVWLGTFDSAEDAARAYDAAARslrgpkaktnfplnisdsfnapireenggfckfdsvvqvnrpttssmsstvesfsgprpanqlapprlqQQQQQKKIVvqpaagddcrsdcdssssviddgddcvfssslfrkvlpfdlnlpppplspmmtlmdggddlrlcl
Flexible Loop (DISEMBL)
mrrgrstaaapskpiekrtgpeaspdiryrgvrkrpwgrfaaeirdpwkktrVWLGTFDSAEDAARAYDAAARslrgpkaktnfplnisdSFNAPIREENGGFCKFDSVVQVNRPTTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKKIVVQPAAGDDCRSDCDSSSSVIDDGDDCVFSSSLFRKVLPFDLNLPPPPLSPMMTLMDGGDDLRLCL
Low Complexity Region (SEG)
MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSaedaaraydaaarSLRGPKAKTNFPLNISDSFNAPIREENGGFCKFDSVVQVNRPttssmsstvesfsGPRpanqlapprlqqqqqqkkivvqpaaGddcrsdcdssssviddgddcVFSSSLFRKVlpfdlnlpppplspmmtlmDGGDDLRLCL
Disordered region (IsUnstruct)
***************************RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAY***********************F***IREENGGFCKFDSVV**************************************************************DGDDCVFSSSLFRKVLPFDLN***********************
Disordered Region (DISOPRED)
*******************************VRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPL**************************************************************************************************RKVLPFDLNLPPPPLSPMMTLMDGGDDLRLCL
Disordered Region (DISEMBL)
***********************SPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLNISDSFNAPIREENGGFCKFDSVVQVNR******************************************************SVIDDGDDCVFSSSLFRKVLPFDLNLPPPPLSPMMTLMDGGDDLRLCL
Disordered Region (DISPRO)
*************************DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLN**************************************************************************************GDDCVFSSSLFRKVLPFDLNLPPPPLSPMMTLMDGGDDLRLCL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLNISDSFNAPIREENGGFCKFDSVVQVNRPTTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKKIVVQPAAGDDCRSDCDSSSSVIDDGDDCVFSSSLFRKVLPFDLNLPPPPLSPMMTLMDGGDDLRLCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
O80339	225	Ethylene-responsive trans	yes	no	0.620	0.595	0.549	4e-31
Q9LDE4	244	Ethylene-responsive trans	no	no	0.967	0.856	0.429	1e-28
Q9SXS8	225	Ethylene-responsive trans	N/A	no	0.939	0.902	0.5	1e-28
O80340	222	Ethylene-responsive trans	no	no	0.300	0.292	0.805	5e-25
Q9LW49	227	Ethylene-responsive trans	N/A	no	0.282	0.268	0.803	2e-24
Q9FE67	200	Ethylene-responsive trans	no	no	0.384	0.415	0.650	2e-24
Q94ID6	189	Ethylene-responsive trans	no	no	0.314	0.359	0.75	2e-24
Q40477	225	Ethylene-responsive trans	N/A	no	0.277	0.266	0.8	7e-24
Q9ZWA2	245	Ethylene-responsive trans	no	no	0.347	0.306	0.64	6e-23
Q9C5I3	166	Ethylene-responsive trans	no	no	0.273	0.355	0.779	2e-21

>sp|O80339|ERF82_ARATH Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1

 Score =  134 bits (338), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/151 (54%), Positives = 96/151 (63%), Gaps = 17/151 (11%)

Query: 1   MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS 60
           MRRGR ++A     +          +IR+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDS
Sbjct: 1   MRRGRGSSAVAGPTVVAAINGSVK-EIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDS 59

Query: 61  AEDAARAYDAAARSLRGPKAKTNFPLNISDSFNAPIREENGGFCKFDSV----------- 109
           AE+AARAYD+AAR+LRGPKAKTNFP++ S      +R         + V           
Sbjct: 60  AEEAARAYDSAARNLRGPKAKTNFPIDSSSPPPPNLRFNQIRNQNQNQVDPFMDHRLFTD 119

Query: 110 -----VQVNRPTTSSMSSTVESFSGPRPANQ 135
                  VNRPT+SSMSSTVESFSGPRP   
Sbjct: 120 HQQQFPIVNRPTSSSMSSTVESFSGPRPTTM 150

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LDE4|ERF83_ARATH Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/242 (42%), Positives = 126/242 (52%), Gaps = 33/242 (13%)

Query: 1   MRRGR-STAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFD 59
           MR+GR S+   P+ P+   T   +  + RYRGVRKRPWGRFAAEIRDP KK+RVWLGTFD
Sbjct: 1   MRKGRGSSVVGPALPV---TAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFD 57

Query: 60  SAEDAARAYDAAARSLRGPKAKTNFPLNIS--------------------------DSFN 93
           SA DAARAYD AAR+LRGPKAKTNFP++ S                          D F 
Sbjct: 58  SAVDAARAYDTAARNLRGPKAKTNFPIDCSPSSPLQPLTYLHNQNLCSPPVIQNQIDPFM 117

Query: 94  APIREENGGFCKFDSVVQVNRPTTSSMSSTVESFSGPRPANQLAPPRLQQQ--QQQKKIV 151
                  G F +      ++RP +SSMSSTV+S SGPRP    A      +     K+  
Sbjct: 118 DHRLYGGGNFQEQQQQQIISRPASSSMSSTVKSCSGPRPMEAAAASSSVAKPLHAIKRYP 177

Query: 152 VQPAAGDDCRSDCDSSSSVIDDGDDCVFSSSLFRKVLPFDLNLPPPPLSPMMTLMDGGDD 211
             P    +       SSS + D  D + SSS  RK  PF  +L  PPL  +     G DD
Sbjct: 178 RTPPVAPEDCHSDCDSSSSVIDDGDDIASSSSRRKT-PFQFDLNFPPLDGVDLFAGGIDD 236

Query: 212 LR 213
           L 
Sbjct: 237 LH 238

Involved in the regulation of gene expression by abscisic acid, stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Part of a transcriptional repressor complex including a histone deacetylase.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXS8|ERF3_TOBAC Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1

 Score =  126 bits (316), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 119/238 (50%), Positives = 137/238 (57%), Gaps = 35/238 (14%)

Query: 1   MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS 60
           MRRGR+ AA      E   G   S +IR+RGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS
Sbjct: 1   MRRGRAAAAPAPVTGEP-NGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS 59

Query: 61  AEDAARAYDAAARSLRGPKAKTNFPLNISDS--FNAPIREENGGFC--KF---DSVVQVN 113
           AEDAARAYDAAAR+LRGPKAKTNFPL  +    FN      N  F   +F   D+ +   
Sbjct: 60  AEDAARAYDAAARALRGPKAKTNFPLPYAHHHQFNQGHNPNNDPFVDSRFYPQDNPIISQ 119

Query: 114 RPTTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKK----------IVVQPAAGDDCRSD 163
           RPT+SSMSSTVESFSGPRP            ++  +               ++      D
Sbjct: 120 RPTSSSMSSTVESFSGPRPPPAPRQQTTASSRKYTRSPPVVPDDCHSDCDSSSSVVDHGD 179

Query: 164 CDSSSSVIDDGDDCVFSSSLFRKVLPFDLNLPPPPLSPMMTLMD--GGDDLR---LCL 216
           C+      +D D+   +SS FRK L FDLNLPPP        MD  G DDL    LCL
Sbjct: 180 CEKE----NDNDNDNIASSSFRKPLLFDLNLPPP--------MDDAGADDLHCTALCL 225

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs.

Nicotiana tabacum (taxid: 4097)

>sp|O80340|ERF78_ARATH Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1

 Score =  114 bits (285), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/67 (80%), Positives = 59/67 (88%), Gaps = 2/67 (2%)

Query: 26 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFP 85
          +IRYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+AE+AARAYD AAR  RG KAKTNFP
Sbjct: 22 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81

Query: 86 --LNISD 90
            L +SD
Sbjct: 82 TFLELSD 88

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways, and could also regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW49|ERF4_NICSY Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/61 (80%), Positives = 56/61 (91%)

Query: 26 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFP 85
          ++ YRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+AE+AA+AYD AAR  RGPKAKTNFP
Sbjct: 24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83

Query: 86 L 86
          L
Sbjct: 84 L 84

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs.

Nicotiana sylvestris (taxid: 4096)

>sp|Q9FE67|ERF80_ARATH Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 62/83 (74%)

Query: 4  GRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAED 63
          GRS A +     +  T      ++ +RGVRKRPWGR+AAEIRDP KKTRVWLGTFD+AE+
Sbjct: 8  GRSIAVSEGGGGKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEE 67

Query: 64 AARAYDAAARSLRGPKAKTNFPL 86
          AARAYD AAR  RG KAKTNFPL
Sbjct: 68 AARAYDTAAREFRGSKAKTNFPL 90

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94ID6|ERF81_ARATH Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/68 (75%), Positives = 57/68 (83%)

Query: 26 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFP 85
          ++ YRGVRKRPWGR+AAEIRDPWKKTRVWLGTFD+ E+AA AYD AAR LRG KAKTNFP
Sbjct: 9  EVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68

Query: 86 LNISDSFN 93
            +S   N
Sbjct: 69 SPLSLDLN 76

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40477|ERF4_TOBAC Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1

 Score =  110 bits (275), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 48/60 (80%), Positives = 55/60 (91%)

Query: 26 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFP 85
          ++ YRGVRKRPWGR+AAEIRDP KK+RVWLGTFD+AE+AA+AYD AAR  RGPKAKTNFP
Sbjct: 24 EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83

Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. May regulate other AtERFs.

Nicotiana tabacum (taxid: 4097)

>sp|Q9ZWA2|ERF77_ARATH Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1

 Score =  107 bits (267), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 48/75 (64%), Positives = 59/75 (78%)

Query: 12  SKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAA 71
           +K +    G E S ++RYRGVR+RPWGR+AAEIRDP KK RVWLG+F++ E+AARAYD+A
Sbjct: 36  TKALAVNDGGEKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSA 95

Query: 72  ARSLRGPKAKTNFPL 86
           A   RG KA TNFPL
Sbjct: 96  AIRFRGSKATTNFPL 110

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5I3|ERF76_ARATH Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1

 Score =  102 bits (253), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 52/59 (88%)

Query: 27 IRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFP 85
          +RYRGVRKRPWGR+AAEIRDP+KK+RVWLGTFD+ E+AARAYD  A   RG KAKTNFP
Sbjct: 18 VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76

Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
255640750	215	unknown [Glycine max]	0.865	0.869	0.597	4e-44
356501259	215	PREDICTED: ethylene-responsive transcrip	0.865	0.869	0.601	3e-42
449450890	219	PREDICTED: ethylene-responsive transcrip	0.944	0.931	0.562	5e-41
343796218	223	ethylene response factor ERF4 [Solanum t	0.939	0.910	0.533	4e-40
255580742	228	Ethylene-responsive transcription factor	0.944	0.894	0.525	3e-38
449444731	214	PREDICTED: ethylene-responsive transcrip	0.569	0.574	0.624	2e-36
370316620	211	ERF transcription factor 5 [Glycine max]	0.833	0.853	0.544	2e-35
356554541	212	PREDICTED: ethylene-responsive transcrip	0.833	0.849	0.544	2e-35
383875204	219	ethylene response factor 7, partial [Dio	0.763	0.753	0.554	2e-35
225447161	204	PREDICTED: ethylene-responsive transcrip	0.828	0.877	0.592	1e-32

>gi|255640750|gb|ACU20659.1| unknown [Glycine max]

 Score =  183 bits (465), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 123/206 (59%), Positives = 138/206 (66%), Gaps = 19/206 (9%)

Query: 1   MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS 60
           MRRGR+ AAA +  +   T  +A    R+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDS
Sbjct: 1   MRRGRTAAAAAA--VVDPTPDQAKETTRFRGVRKRPWGRFAAEIRDPWKKQRVWLGTFDS 58

Query: 61  AEDAARAYDAAARSLRGPKAKTNF-----PLNISDSFNAPIREENGGFCKFDSVVQVNRP 115
           AEDAARAYD AARS RGPKAKTNF     P         P+ + +G   KF+ VVQVNRP
Sbjct: 59  AEDAARAYDKAARSFRGPKAKTNFPPFPGPAEADHHSQIPLYQAHGLSTKFEPVVQVNRP 118

Query: 116 TTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKKIVVQPAA--GDD---CRSDCDSSSSV 170
           T+S MSSTVESFSGPR       P    + +   +VV P     DD   C SDCDSSSSV
Sbjct: 119 TSSGMSSTVESFSGPR------VPSSSSRAKPLVVVVNPIIPLNDDEDDCHSDCDSSSSV 172

Query: 171 IDDGDDCVFSSSLFRKVLPFDLNLPP 196
           + DG DCV  SS FR+ LPFDLNLPP
Sbjct: 173 VGDGQDCVLISS-FRQPLPFDLNLPP 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501259|ref|XP_003519443.1| PREDICTED: ethylene-responsive transcription factor 3-like [Glycine max]

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/206 (60%), Positives = 139/206 (67%), Gaps = 19/206 (9%)

Query: 1   MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS 60
           MRRGR+ AAA +  +   T  +A    R+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDS
Sbjct: 1   MRRGRTAAAAAA--VVDPTPDQAKETTRFRGVRKRPWGRFAAEIRDPWKKQRVWLGTFDS 58

Query: 61  AEDAARAYDAAARSLRGPKAKTNF-----PLNISDSFNAPIREENGGFCKFDSVVQVNRP 115
           AEDAARAYD AARS RGPKAKTNF     P         P+ + +G   KF+ VVQVNRP
Sbjct: 59  AEDAARAYDKAARSFRGPKAKTNFPPFPGPAEADHHSQIPLYQAHGLSTKFEPVVQVNRP 118

Query: 116 TTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKKIVVQPAA--GDD---CRSDCDSSSSV 170
           T+S MSSTVESFSGPR       P    + +   +VV P     DD   C SDCDSSSSV
Sbjct: 119 TSSGMSSTVESFSGPR------VPSSSSRAKPLVVVVNPIIPLNDDEDDCHSDCDSSSSV 172

Query: 171 IDDGDDCVFSSSLFRKVLPFDLNLPP 196
           +DDG DCV  SS FR+ LPFDLNLPP
Sbjct: 173 VDDGQDCVLISS-FRQPLPFDLNLPP 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450890|ref|XP_004143195.1| PREDICTED: ethylene-responsive transcription factor 3-like [Cucumis sativus] gi|449530039|ref|XP_004172004.1| PREDICTED: ethylene-responsive transcription factor 3-like [Cucumis sativus]

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 130/231 (56%), Positives = 155/231 (67%), Gaps = 27/231 (11%)

Query: 1   MRRGRSTAAAPSKPIEKRTGPEASP--DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTF 58
           MRRGR +    +  I   T    +P  +IRYRGVRKRPWGR+AAEIRDPWKKTRVWLGTF
Sbjct: 1   MRRGRPSDPFTATEIPNSTIQPENPLKEIRYRGVRKRPWGRYAAEIRDPWKKTRVWLGTF 60

Query: 59  DSAEDAARAYDAAARSLRGPKAKTNFPLN---ISDSFNAPIRE------ENGGFCKFDSV 109
           DSAE+AARAYD AAR+LRG KAKTNFPL+   IS     P  +      ++ GF      
Sbjct: 61  DSAEEAARAYDNAARTLRGAKAKTNFPLHPSTISIQQQIPFYQSPPDLHDSNGFGAKIEC 120

Query: 110 VQVNRPTTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKKIVVQPAAGDDCRSDCDSSSS 169
           VQ NRPT+SS+SSTVESFSGPR +N L+          ++  VQP + DDC SDCDSSSS
Sbjct: 121 VQANRPTSSSLSSTVESFSGPRISNPLS-----SLSMVRRRPVQPVSPDDCHSDCDSSSS 175

Query: 170 VIDDGDDCVFSSSLFRKVLPFDLNLPPPPLSPMMTLMD-GGDDLR---LCL 216
           V+DD + CV +S  FR+ LPFDLNLPPP     M ++D  GDDL+   LCL
Sbjct: 176 VVDDDEVCVLAS--FRRALPFDLNLPPP-----MDVVDLTGDDLQATALCL 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343796218|gb|AEM63545.1| ethylene response factor ERF4 [Solanum tuberosum]

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 126/236 (53%), Positives = 146/236 (61%), Gaps = 33/236 (13%)

Query: 1   MRRGRST-----AAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWL 55
           MRRGR+T     AAAP KP     G     +IR+RGVRKRPWGRFAAEIRDPWKKTRVWL
Sbjct: 1   MRRGRATPAAAAAAAPVKP----DGSGGLNEIRFRGVRKRPWGRFAAEIRDPWKKTRVWL 56

Query: 56  GTFDSAEDAARAYDAAARSLRGPKAKTNFPL-------NISDSFNAPIREENGGFCKFDS 108
           GTFDSAEDAA+AYD AAR+LRGPKAKTNFPL         + S N   R  +      ++
Sbjct: 57  GTFDSAEDAAKAYDTAARTLRGPKAKTNFPLPLYSQHHQFNQSLNRNDRLVDPRLYSQEA 116

Query: 109 VVQVNRPTTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKKIVVQPAAGDDCRSDCDSSS 168
            +   RPT+S MSSTVESFSGPRP  Q     L  ++  +   V+P       SDCDSSS
Sbjct: 117 PIVCQRPTSSGMSSTVESFSGPRPPRQQT-AVLPLRKHPRSPPVEPDDCR---SDCDSSS 172

Query: 169 SVIDDGD-----DCVFSSSLFRKVLPFDLNLPPPPLSPMMTLMDGGDDLR---LCL 216
           SV++DGD     D + SSS FR  LPFDLN PP    PM  +    +DL    LCL
Sbjct: 173 SVVEDGDCEGGNDNIVSSS-FRNPLPFDLNFPP----PMDDVYANSNDLYCTALCL 223

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580742|ref|XP_002531192.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223529194|gb|EEF31169.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 126/240 (52%), Positives = 147/240 (61%), Gaps = 36/240 (15%)

Query: 1   MRRGRSTAAAPSKPIEKRTG----PEASP---DIRYRGVRKRPWGRFAAEIRDPWKKTRV 53
           MRRGR  A A  +   +  G    P+ +P   + RYRGVRKRPWGRFAAEIRDPWKKTRV
Sbjct: 1   MRRGRGAAVAAKQEAAQPNGSAPAPQNTPNGKEPRYRGVRKRPWGRFAAEIRDPWKKTRV 60

Query: 54  WLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLNISD--------------SFNAPIREE 99
           WLGTFDSAEDAARAYD AAR+LRGPKAKTNFP+N S                ++  +   
Sbjct: 61  WLGTFDSAEDAARAYDTAARTLRGPKAKTNFPINASQLSPFAYQNPPDPFVDYHHRVFTT 120

Query: 100 NGGFCKFDSVVQVNRPTTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKKIVVQPAAGDD 159
           N G+      V   RPT+SS+SSTVESFSGPRP     PP     Q++      P   +D
Sbjct: 121 NNGYESHP--VNPQRPTSSSLSSTVESFSGPRP-----PPTTVGSQKRHHPRTPPVVPED 173

Query: 160 CRSDCDSSSSVIDDGDDCVFSSSLFRKVLPFDLNLPPPPLSPMMTLMDGGDDLR---LCL 216
           C SDCDSSSSV+DDGD    SS  +RK LPFDLN P     P+  +   GDDL+   LCL
Sbjct: 174 CHSDCDSSSSVVDDGDIASSSSLCYRKPLPFDLNFP-----PLDQVDFAGDDLQCTALCL 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444731|ref|XP_004140127.1| PREDICTED: ethylene-responsive transcription factor 3-like [Cucumis sativus] gi|449481123|ref|XP_004156088.1| PREDICTED: ethylene-responsive transcription factor 3-like [Cucumis sativus]

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/141 (62%), Positives = 106/141 (75%), Gaps = 18/141 (12%)

Query: 1   MRRGRSTAAAPSKPIEKRTGPEAS----PDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLG 56
           MRRGR+T        +  T PE+      ++R+RGVRKRPWGR+AAEIRDPWKKTRVWLG
Sbjct: 1   MRRGRAT--------DPLTVPESVQKPVKEVRFRGVRKRPWGRYAAEIRDPWKKTRVWLG 52

Query: 57  TFDSAEDAARAYDAAARSLRGPKAKTNFPLN---ISDSFNAPIREE---NGGFCKFDSVV 110
           TFD+AEDAARAYD AA SLRGPKAKTNFPL+   IS     P  ++   +GGFC+  +++
Sbjct: 53  TFDTAEDAARAYDEAALSLRGPKAKTNFPLHPSTISVHQQIPFSQQFHDSGGFCEISNII 112

Query: 111 QVNRPTTSSMSSTVESFSGPR 131
            VNRPT+SS+SSTVESFSGPR
Sbjct: 113 PVNRPTSSSLSSTVESFSGPR 133

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|370316620|gb|AEX25891.1| ERF transcription factor 5 [Glycine max]

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/204 (54%), Positives = 127/204 (62%), Gaps = 24/204 (11%)

Query: 1   MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS 60
           MRRGR+TAA      E+      + + R+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDS
Sbjct: 1   MRRGRATAAVVDPTAEQ------AKETRFRGVRKRPWGRFAAEIRDPWKKQRVWLGTFDS 54

Query: 61  AEDAARAYDAAARSLRGPKAKTNFPL------NISDSFNAPIREENGGFCKFDSVVQVNR 114
           AEDAARAYD AARS RGPKAKTNFP       + S     P+ + +G   KF+   QVNR
Sbjct: 55  AEDAARAYDKAARSFRGPKAKTNFPSFPGPTDHHSSQQIPPLYQAHGLSTKFEP-AQVNR 113

Query: 115 PTTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKKIVVQP----AAGDDCRSDCDSSSSV 170
           PTTS MSSTVESFSGPR              ++  +VV P       DD       SSS 
Sbjct: 114 PTTSGMSSTVESFSGPRVPPS------SSSSRKPLVVVNPIIPLDDDDDDCHSDCDSSSS 167

Query: 171 IDDGDDCVFSSSLFRKVLPFDLNL 194
           + D  DCV +SS FR+ LPFDLNL
Sbjct: 168 VVDDQDCVLTSS-FRQPLPFDLNL 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554541|ref|XP_003545604.1| PREDICTED: ethylene-responsive transcription factor 3-like [Glycine max]

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/204 (54%), Positives = 127/204 (62%), Gaps = 24/204 (11%)

Query: 1   MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS 60
           MRRGR+TAA      E+      + + R+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDS
Sbjct: 1   MRRGRATAAVVDPTAEQ------AKETRFRGVRKRPWGRFAAEIRDPWKKQRVWLGTFDS 54

Query: 61  AEDAARAYDAAARSLRGPKAKTNFPL------NISDSFNAPIREENGGFCKFDSVVQVNR 114
           AEDAARAYD AARS RGPKAKTNFP       + S     P+ + +G   KF+   QVNR
Sbjct: 55  AEDAARAYDKAARSFRGPKAKTNFPSFPGPTDHHSSQQIPPLYQAHGLSTKFEP-AQVNR 113

Query: 115 PTTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKKIVVQP----AAGDDCRSDCDSSSSV 170
           PTTS MSSTVESFSGPR              ++  +VV P       DD       SSS 
Sbjct: 114 PTTSGMSSTVESFSGPRVPPS------SSSSRKPLVVVNPIIPLDDDDDDCHSDCDSSSS 167

Query: 171 IDDGDDCVFSSSLFRKVLPFDLNL 194
           + D  DCV +SS FR+ LPFDLNL
Sbjct: 168 VVDDQDCVLTSS-FRQPLPFDLNL 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|383875204|gb|AFH56414.1| ethylene response factor 7, partial [Diospyros kaki]

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/184 (55%), Positives = 114/184 (61%), Gaps = 19/184 (10%)

Query: 23  ASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKT 82
           A+ ++R+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDSAEDAARAYD+AAR+LRGPKAKT
Sbjct: 30  AAKEVRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDSAARALRGPKAKT 89

Query: 83  NFPL---------NISDSFNAPIREENGGFCKFDSVVQVNRPTTSSMSSTVESFSGPRPA 133
           NFP          N SD            F +   V Q  RPTTSS+SSTVESFSGPRP 
Sbjct: 90  NFPPSSPFSPFHQNPSDPMIEHRLYAPHHFPEHQIVAQ--RPTTSSLSSTVESFSGPRPP 147

Query: 134 NQLAPPRLQQQQQQKKIVVQPAAGDDCRSDCDSSSSVIDDGDDCVFSSSLFRKVLPFDLN 193
               P R   +         P    +       SSS + D  D   +SS FRK LPFDLN
Sbjct: 148 QPAVPARRHPR--------TPPVSPEDCHSDCDSSSSVVDDGDGDIASSSFRKPLPFDLN 199

Query: 194 LPPP 197
           LPPP
Sbjct: 200 LPPP 203

Source: Diospyros kaki

Species: Diospyros kaki

Genus: Diospyros

Family: Ebenaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447161|ref|XP_002275892.1| PREDICTED: ethylene-responsive transcription factor 3-like [Vitis vinifera]

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 122/206 (59%), Positives = 140/206 (67%), Gaps = 27/206 (13%)

Query: 1   MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS 60
           MRRGR+TA    +  E R       D+R+RGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS
Sbjct: 1   MRRGRATARDAPQQQEVRN---QGKDVRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS 57

Query: 61  AEDAARAYDAAARSLRGPKAKTNFPLN-----ISDSFNAP----IREENGGFCKFDSVVQ 111
           AEDAARAYDAAARSLRGPKAKTNFPL+     ++  F  P    I+++N          Q
Sbjct: 58  AEDAARAYDAAARSLRGPKAKTNFPLSSPAVPLTVPFQQPSQYQIQDQNHSHQH-----Q 112

Query: 112 VNRPTTSSMSSTVESFSGPRPANQLAPPRLQQQQQQKKIVVQPAAGDDCRSDCDSSSSVI 171
             RPTTS MSSTVESFSGPR +N   PP    + + +   V     +DC+SDCDSSSSVI
Sbjct: 113 PQRPTTSGMSSTVESFSGPRLSN---PPSAPPRPRLRAPPV-----NDCQSDCDSSSSVI 164

Query: 172 DDGDDCVFSSSLFRKVLPFDLNLPPP 197
           D+ D  + SSS  RK LPFDLNL PP
Sbjct: 165 DECDGDLTSSS--RKPLPFDLNLLPP 188

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
TAIR|locus:2008021	225	ERF3 "ethylene responsive elem	0.407	0.391	0.561	1.3e-22
TAIR|locus:2092339	244	ERF7 "ethylene response factor	0.407	0.360	0.576	5.5e-22
TAIR|locus:2032510	189	ERF12 "ERF domain protein 12"	0.314	0.359	0.617	8.3e-19
TAIR|locus:2009655	185	ERF8 "ethylene response factor	0.370	0.432	0.536	1.7e-18
TAIR|locus:2087065	222	ERF4 "ethylene responsive elem	0.300	0.292	0.641	1.7e-18
TAIR|locus:2167659	200	ERF9 "erf domain protein 9" [A	0.384	0.415	0.518	5.8e-18
TAIR|locus:2032500	166	ERF11 "ERF domain protein 11"	0.291	0.379	0.625	3.2e-17
TAIR|locus:2024249	245	ERF10 "ERF domain protein 10"	0.347	0.306	0.52	6.7e-17
UNIPROTKB|Q5MFV2	235	BIERF2 "BTH-induced ERF transc	0.263	0.242	0.631	6e-16
TAIR|locus:2116224	268	RRTF1 "redox responsive transc	0.342	0.276	0.48	7.7e-16

TAIR|locus:2008021 ERF3 "ethylene responsive element binding factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 50/89 (56%), Positives = 58/89 (65%)

Query:     1 MRRGRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDS 60
             MRRGR ++A     +          +IR+RGVRKRPWGRFAAEIRDPWKK RVWLGTFDS
Sbjct:     1 MRRGRGSSAVAGPTVVAAINGSVK-EIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDS 59

Query:    61 XXXXXXXXXXXXXSLRGPKAKTNFPLNIS 89
                          +LRGPKAKTNFP++ S
Sbjct:    60 AEEAARAYDSAARNLRGPKAKTNFPIDSS 88

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2092339 ERF7 "ethylene response factor 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 53/92 (57%), Positives = 61/92 (66%)

Query:     1 MRRGR-STAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFD 59
             MR+GR S+   P+ P+    G    P  RYRGVRKRPWGRFAAEIRDP KK+RVWLGTFD
Sbjct:     1 MRKGRGSSVVGPALPVTAG-GSVKEP--RYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFD 57

Query:    60 SXXXXXXXXXXXXXSLRGPKAKTNFPLNISDS 91
             S             +LRGPKAKTNFP++ S S
Sbjct:    58 SAVDAARAYDTAARNLRGPKAKTNFPIDCSPS 89

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2032510 ERF12 "ERF domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 42/68 (61%), Positives = 47/68 (69%)

Query:    26 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 85
             ++ YRGVRKRPWGR+AAEIRDPWKKTRVWLGTFD+              LRG KAKTNFP
Sbjct:     9 EVHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68

Query:    86 LNISDSFN 93
               +S   N
Sbjct:    69 SPLSLDLN 76

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2009655 ERF8 "ethylene response factor 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 44/82 (53%), Positives = 52/82 (63%)

Query:    10 APSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXX 69
             AP+ P    +   A+ +IRYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+         
Sbjct:    14 APTNPTHHESN--AAKEIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYD 71

Query:    70 XXXXSLRGPKAKTNFPLNISDS 91
                   RG KAKTNF + +  S
Sbjct:    72 AAARDFRGVKAKTNFGVIVGSS 93

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2087065 ERF4 "ethylene responsive element binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 43/67 (64%), Positives = 47/67 (70%)

Query:    26 DIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 85
             +IRYRGVRKRPWGR+AAEIRDP KKTRVWLGTFD+               RG KAKTNFP
Sbjct:    22 EIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81

Query:    86 --LNISD 90
               L +SD
Sbjct:    82 TFLELSD 88

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0010105 "negative regulation of ethylene mediated signaling pathway" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0016604 "nuclear body" evidence=IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2167659 ERF9 "erf domain protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
 Identities = 43/83 (51%), Positives = 50/83 (60%)

Query:     4 GRSTAAAPSKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXX 63
             GRS A +     +  T      ++ +RGVRKRPWGR+AAEIRDP KKTRVWLGTFD+   
Sbjct:     8 GRSIAVSEGGGGKTMTMTTMRKEVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEE 67

Query:    64 XXXXXXXXXXSLRGPKAKTNFPL 86
                         RG KAKTNFPL
Sbjct:    68 AARAYDTAAREFRGSKAKTNFPL 90

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2032500 ERF11 "ERF domain protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 40/64 (62%), Positives = 46/64 (71%)

Query:    27 IRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL 86
             +RYRGVRKRPWGR+AAEIRDP+KK+RVWLGTFD+               RG KAKTNFP 
Sbjct:    18 VRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFPC 77

Query:    87 -NIS 89
              NI+
Sbjct:    78 YNIN 81

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2024249 ERF10 "ERF domain protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 39/75 (52%), Positives = 48/75 (64%)

Query:    12 SKPIEKRTGPEASPDIRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXX 71
             +K +    G E S ++RYRGVR+RPWGR+AAEIRDP KK RVWLG+F++           
Sbjct:    36 TKALAVNDGGEKSKEVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSA 95

Query:    72 XXSLRGPKAKTNFPL 86
                 RG KA TNFPL
Sbjct:    96 AIRFRGSKATTNFPL 110

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

UNIPROTKB|Q5MFV2 BIERF2 "BTH-induced ERF transcriptional factor 2" [Oryza sativa Indica Group (taxid:39946)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 36/57 (63%), Positives = 40/57 (70%)

Query:    29 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP 85
             YRGVRKRPWGR+AAEIRDP KK+RVWLGT+D+               RG KAKTNFP
Sbjct:    34 YRGVRKRPWGRYAAEIRDPAKKSRVWLGTYDTAEEAARAYDAAAREFRGAKAKTNFP 90

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2116224 RRTF1 "redox responsive transcription factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 36/75 (48%), Positives = 50/75 (66%)

Query:    29 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFP-LN 87
             YRGVR+RPWG+FAAEIRDP + TRVWLGTF++               RGP+AK NFP ++
Sbjct:   136 YRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVD 195

Query:    88 ISDSFNAPIREENGG 102
              + S ++P+  ++ G
Sbjct:   196 YTSSVSSPVAADDIG 210

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0050832 "defense response to fungus" evidence=IEP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	216
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	7e-35
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	1e-31
pfam00847	53	pfam00847, AP2, AP2 domain	1e-15

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  117 bits (296), Expect = 7e-35
 Identities = 42/64 (65%), Positives = 51/64 (79%)

Query: 28 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLN 87
          +YRGVR+RPWG++ AEIRDP K  RVWLGTFD+AE+AARAYD AA   RG  A+ NFP +
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNS 60

Query: 88 ISDS 91
          + DS
Sbjct: 61 LYDS 64

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  109 bits (274), Expect = 1e-31
 Identities = 39/58 (67%), Positives = 46/58 (79%)

Query: 28 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFP 85
          +YRGVR+RPWG++ AEIRDP    R+WLGTFD+AE+AARAYD AA  LRG  A  NFP
Sbjct: 2  KYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 67.7 bits (166), Expect = 1e-15
 Identities = 30/53 (56%), Positives = 34/53 (64%), Gaps = 4/53 (7%)

Query: 28 RYRGVRKRP-WGRFAAEIRDPW--KKTRVWLGTFDSAEDAARAYDAAARSLRG 77
           Y+GVR    WGR+ AEIRDP   KK R  LGTF + E+AARA  AA   LRG
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.86
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.86
PHA00280	121	putative NHN endonuclease	99.52
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.2
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	81.05

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.86  E-value=1.6e-21  Score=139.03  Aligned_cols=63  Identities=65%  Similarity=1.151  Sum_probs=60.6

Q ss_pred             ceeeeeeCCCCcEEEEEecCCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 027990           28 RYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLNISD   90 (216)
Q Consensus        28 ~yRGV~~r~~GrW~A~I~~p~~gk~i~LGtFdT~EEAArAYD~Aa~~l~G~~A~tNFp~s~~~   90 (216)
                      +|+||+++++|||+|+|+++.+++.+|||+|+|+||||+|||.++++++|.++.+|||.+.|+
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999988999999999999999999999999999999999999999999999999998885

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.86  E-value=1.3e-21  Score=137.87  Aligned_cols=61  Identities=64%  Similarity=1.116  Sum_probs=57.7

Q ss_pred             CceeeeeeCCCCcEEEEEecCCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 027990           27 IRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLN   87 (216)
Q Consensus        27 S~yRGV~~r~~GrW~A~I~~p~~gk~i~LGtFdT~EEAArAYD~Aa~~l~G~~A~tNFp~s   87 (216)
                      |+|+||+++++|||+|+|+++..|+++|||+|+|+||||+|||.++++++|.++.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999955599999999999999999999999999999999999964

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>PHA00280 putative NHN endonuclease

Probab=99.52  E-value=2.2e-14  Score=115.28  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=53.6

Q ss_pred             CCCCCCCCceeeeeeCC-CCcEEEEEecCCCCceEecCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 027990           20 GPEASPDIRYRGVRKRP-WGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAK   81 (216)
Q Consensus        20 ~~~~~~~S~yRGV~~r~-~GrW~A~I~~p~~gk~i~LGtFdT~EEAArAYD~Aa~~l~G~~A~   81 (216)
                      +..+.|+|+|+||+|.+ .|||+|+|.+  +||+++||.|+++|+|+.||+ ++++|||++|.
T Consensus        60 ~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         60 KTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            45668999999999876 5999999999  999999999999999999997 77899999885

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.20  E-value=2.9e-11  Score=83.06  Aligned_cols=52  Identities=35%  Similarity=0.452  Sum_probs=45.5

Q ss_pred             CceeeeeeCC-CCcEEEEEecCCC---CceEecCCCCCHHHHHHHHHHHHHHhcCC
Q 027990           27 IRYRGVRKRP-WGRFAAEIRDPWK---KTRVWLGTFDSAEDAARAYDAAARSLRGP   78 (216)
Q Consensus        27 S~yRGV~~r~-~GrW~A~I~~p~~---gk~i~LGtFdT~EEAArAYD~Aa~~l~G~   78 (216)
                      |+|+||++.+ .++|+|+|++...   +++++||.|+++|||+++|+.++++++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999876 5999999998322   49999999999999999999999999885

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=81.05  E-value=5.9  Score=26.16  Aligned_cols=38  Identities=13%  Similarity=0.126  Sum_probs=29.5

Q ss_pred             cEEEEEe--cCCCC--ceEecCCCCCHHHHHHHHHHHHHHhc
Q 027990           39 RFAAEIR--DPWKK--TRVWLGTFDSAEDAARAYDAAARSLR   76 (216)
Q Consensus        39 rW~A~I~--~p~~g--k~i~LGtFdT~EEAArAYD~Aa~~l~   76 (216)
                      +|..+|.  .+..|  ++++-+-|.|..||-.+.......+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  44344  67888999999999999988776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	216
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-11
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		2e-11

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 28 RYRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL 86
           YRGVR+RPWG+FAAEIRDP K   RVWLGTF++              +RG +A  NFPL
Sbjct: 5  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 64
Query: 87 NIS 89
           ++
Sbjct: 65 RVN 67

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/62 (51%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 28 RYRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSXXXXXXXXXXXXXSLRGPKAKTNFPL 86
           YRGVR+RPWG+FAAEIRDP K   RVWLGTF++              +RG +A  NFPL
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61
Query: 87 NI 88
           +
Sbjct: 62 RV 63
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
1gcc_A	63	Ethylene responsive element binding factor 1; tran	2e-38

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  126 bits (318), Expect = 2e-38
 Identities = 42/62 (67%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 28 RYRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPL 86
           YRGVR+RPWG+FAAEIRDP K   RVWLGTF++AEDAA AYD AA  +RG +A  NFPL
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 87 NI 88
           +
Sbjct: 62 RV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	216
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.91
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	90.51
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	85.02

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.91  E-value=4e-25  Score=157.62  Aligned_cols=60  Identities=70%  Similarity=1.193  Sum_probs=57.1

Q ss_pred             ceeeeeeCCCCcEEEEEecCCC-CceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 027990           28 RYRGVRKRPWGRFAAEIRDPWK-KTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLN   87 (216)
Q Consensus        28 ~yRGV~~r~~GrW~A~I~~p~~-gk~i~LGtFdT~EEAArAYD~Aa~~l~G~~A~tNFp~s   87 (216)
                      +||||++++||||+|+|+++.+ |+++|||+|+|+||||+|||.|+++++|.++.+|||.+
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~   62 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence            6999999999999999999875 79999999999999999999999999999999999975

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=90.51  E-value=0.13  Score=37.66  Aligned_cols=27  Identities=22%  Similarity=0.174  Sum_probs=21.8

Q ss_pred             CCCCceeeeeeCC-CCcEEEEEecCCCCce
Q 027990           24 SPDIRYRGVRKRP-WGRFAAEIRDPWKKTR   52 (216)
Q Consensus        24 ~~~S~yRGV~~r~-~GrW~A~I~~p~~gk~   52 (216)
                      ...|+|.||+|.+ .+.|.|+-.+  +|++
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~r   30 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASR   30 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeE
Confidence            4679999999887 4999999998  5654

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=85.02  E-value=0.15  Score=41.10  Aligned_cols=38  Identities=8%  Similarity=-0.106  Sum_probs=29.5

Q ss_pred             eeeeeeCCCCcEEEEEecCCCCceEecCCCCCHHHHHHHHH
Q 027990           29 YRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYD   69 (216)
Q Consensus        29 yRGV~~r~~GrW~A~I~~p~~gk~i~LGtFdT~EEAArAYD   69 (216)
                      ++||.+...++|.+.|..  . +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            456655223679999988  5 6678999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	216
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	2e-33

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  112 bits (283), Expect = 2e-33
 Identities = 42/62 (67%), Positives = 49/62 (79%), Gaps = 1/62 (1%)

Query: 28 RYRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPL 86
           YRGVR+RPWG+FAAEIRDP K   RVWLGTF++AEDAA AYD AA  +RG +A  NFPL
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 87 NI 88
           +
Sbjct: 62 RV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	216
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.91

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=1.1e-25  Score=159.21  Aligned_cols=60  Identities=68%  Similarity=1.180  Sum_probs=56.1

Q ss_pred             ceeeeeeCCCCcEEEEEecCC-CCceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 027990           28 RYRGVRKRPWGRFAAEIRDPW-KKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLN   87 (216)
Q Consensus        28 ~yRGV~~r~~GrW~A~I~~p~-~gk~i~LGtFdT~EEAArAYD~Aa~~l~G~~A~tNFp~s   87 (216)
                      +||||+++++|||+|+|+++. +++++|||+|+|+||||+|||+|+++++|.++.+|||+.
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            599999999999999999864 568899999999999999999999999999999999975