Citrus Sinensis ID: 027996

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MKADQAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQINGDNYVESNGGRVDPVTED
Secondary Structure (PSIPRED)
ccccccEEEEcccccccccEEEEEEEEEEEEEcccEEEEEccccEEEEEEEccccccccccEEEEcccccEEEEEEEEEEcccccccccccEEEcccccccccccEEEEEEccccccccEEEEEEcccccEEEEEEEEcccEEEEEcccccEEEEEEEEccccccEEEEEcEEEEEEEccccHHHHHHHHHHHHccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccccccccEEEEEEEEEEEEccccEEEEEccccEEEEEccccccccccccEEEEccccccEEEEEHcccccccEccccccEEEEEcccccccccEEEEEEcccEEcccEEEEEEccccccEEEEEccccccEEEEcccccEEEEEEEEEccccEEEEcccEEEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
MKADQAAVLVADEYIYKQETHLTVFktslffqndgftvyncRGELVFrvdsygpdtrdkdehVLMDAHGKCLLTVRRKVQFQlmrpslhhrwegysgertdgqkpifsvrrssiigrsSVTVemyenpgeeyqiegnFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVfllsvkpgfdgaFAMGLVLVLDQingdnyvesnggrvdpvted
Flexible Loop (DISEMBL)
MKADQAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPslhhrwegysgertdgqkpifsvrrssiigrssvTVEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQINGdnyvesnggrvdpvted
Low Complexity Region (SEG)
MKADQAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPifsvrrssiigrssvtvEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQINGDNYVESNGGRVDPVTED
Disordered region (IsUnstruct)
******AVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSG*******PIFSVRRSSIIGRSSVTVEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQINGDNYV*************
Disordered Region (DISOPRED)
******A***ADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQING*****************
Disordered Region (DISEMBL)
MKADQAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQINGDNYVESNGGRVDPVTED
Disordered Region (DISPRO)
***DQAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQINGD****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKADQAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQINGDNYVESNGGRVDPVTED
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q9LVZ8	220	Protein LURP-one-related	yes	no	0.939	0.918	0.639	5e-75
Q9SSC7	210	Protein LURP-one-related	no	no	0.953	0.976	0.654	2e-66
Q9ZVI6	196	Protein LURP-one-related	no	no	0.790	0.867	0.420	1e-24
A0MFL4	221	Protein LURP-one-related	no	no	0.869	0.846	0.333	2e-18
Q9LZX1	217	Protein LURP-one-related	no	no	0.851	0.843	0.274	5e-16
Q9SF24	194	Protein LURP-one-related	no	no	0.841	0.932	0.247	9e-16
A0MFH4	215	Protein LURP-one-related	no	no	0.897	0.897	0.254	1e-15
Q9ZUF7	191	Protein LURP-one-related	no	no	0.846	0.952	0.271	5e-14
Q9LQ36	224	Protein LURP-one-related	no	no	0.855	0.821	0.25	1e-13
Q9SH27	215	Protein LURP-one-related	no	no	0.851	0.851	0.309	5e-12

>sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1

 Score =  280 bits (716), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 133/208 (63%), Positives = 165/208 (79%), Gaps = 6/208 (2%)

Query: 8   VLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDA 67
           ++V   Y+Y+++  LTV KTSLF+  DGF  Y+CRG+++FRVDSYGPDTRD DE VLMDA
Sbjct: 19  IVVDKAYLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDA 78

Query: 68  HGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYEN 127
            GKCLLTV+RK      RP+LH RWEG+ GER++GQKPIFSVRRSSIIGR ++ VE+Y+ 
Sbjct: 79  TGKCLLTVKRK------RPTLHQRWEGFLGERSEGQKPIFSVRRSSIIGRCTMEVEVYDG 132

Query: 128 PGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAM 187
            GEEY I+G+F QRSC I++  K +VAEI+RKVDAST V+L +DVF L +KPGFDGAFAM
Sbjct: 133 TGEEYIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAM 192

Query: 188 GLVLVLDQINGDNYVESNGGRVDPVTED 215
           GLV+VLDQINGD+ VE    +V P  ED
Sbjct: 193 GLVVVLDQINGDDPVEIGDEQVHPFVED 220

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSC7|LOR5_ARATH Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120 PE=1 SV=1

 Score =  251 bits (642), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/214 (65%), Positives = 163/214 (76%), Gaps = 9/214 (4%)

Query: 5   QAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYG-PDTRDKDEHV 63
           +  +LV DE+I+ +E  LTV KTSLFF  DGFTVY+C+G LVFRVDSYG P+TRD DE V
Sbjct: 2   KGGLLVDDEFIHGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVV 61

Query: 64  LMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVE 123
           LMDAHG+CLLT+RRK        SL  RWEGY GER+DGQKPIF VRRSSIIGR+SVTVE
Sbjct: 62  LMDAHGRCLLTLRRKRP------SLRRRWEGYLGERSDGQKPIFGVRRSSIIGRNSVTVE 115

Query: 124 MYEN-PGEEYQIEGNFWQRSCTIFNA-MKESVAEIRRKVDASTQVLLAKDVFLLSVKPGF 181
           +Y +    EY IEG+F  R+CT+  A  +  VAEIRRKVDAST V+L KDVF L+VKPGF
Sbjct: 116 VYGDYQCSEYLIEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGF 175

Query: 182 DGAFAMGLVLVLDQINGDNYVESNGGRVDPVTED 215
           DGAFAMGLVLVLDQI GD+ +E    +V P  ED
Sbjct: 176 DGAFAMGLVLVLDQIYGDDLLEVGEEQVHPSAED 209

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVI6|LOR8_ARATH Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640 PE=2 SV=1

 Score =  113 bits (282), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/183 (42%), Positives = 99/183 (54%), Gaps = 13/183 (7%)

Query: 17  KQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVR 76
           K    LTV+K SL F  DGFTVYN  GELVFRVD+Y    R  D  VLMDA G  LL++R
Sbjct: 20  KAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPR--DNIVLMDASGFPLLSIR 77

Query: 77  RKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRS-SIIGRSSVTVEMYENPGEEYQIE 135
           RK      + SL   W  Y GE    + PIF+ R++ SII        +       Y+IE
Sbjct: 78  RK------KLSLGDCWMVYDGETE--RDPIFTARKNVSIISNRKSLAWVSAKKTVLYEIE 129

Query: 136 GNFWQRSCTIFNAM--KESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVL 193
           G++ QRSC I +    K+  AEI+RK      V   KDV+ L V+   +   AM L ++L
Sbjct: 130 GSYGQRSCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKLIVESEMEPRVAMALTIIL 189

Query: 194 DQI 196
           DQ+
Sbjct: 190 DQM 192

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|A0MFL4|LOR17_ARATH Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590 PE=2 SV=2

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 108/207 (52%), Gaps = 20/207 (9%)

Query: 3   ADQAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEH 62
           + ++ V VA   I    T LTV++ SL    +GFTV +  G+L++RVD+Y   TR  +E 
Sbjct: 20  STESTVSVAAADIGGACTTLTVWRKSLLVSCEGFTVIDSNGDLIYRVDNYA-RTR-PEEL 77

Query: 63  VLMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQK-----PIFSVRRS---SI 114
           +LMD  G  LL + R  +  L+       W  Y    T G+      P + +R++   +I
Sbjct: 78  ILMDKDGNSLLLMHRTKKITLV-----DSWGIYEANDTKGETKIPKCPTWYMRKNLKMNI 132

Query: 115 IG-RSSVTVEMYE---NPGEEYQIEGNFWQRSCTIFNA-MKESVAEIRRKVDASTQVLLA 169
           +  +S +   +Y    +    Y I+G++  +SC I +  + ++V EI+RK   +  V   
Sbjct: 133 LSTKSDILAYVYSGSFDKKNSYIIKGSYRCKSCKIVHVPLNKTVVEIKRKEVRTKGVRFG 192

Query: 170 KDVFLLSVKPGFDGAFAMGLVLVLDQI 196
            DVF L V PGFD   AM LVL+LDQ+
Sbjct: 193 SDVFDLVVNPGFDTGLAMALVLLLDQM 219

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZX1|LOR15_ARATH Protein LURP-one-related 15 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 105/197 (53%), Gaps = 14/197 (7%)

Query: 6   AAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLM 65
             V+V  +Y       + + +  +   +  F + +  G L+F+V    P     D+ VL+
Sbjct: 24  GGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKE--PVFGLHDKRVLL 81

Query: 66  DAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIG-RSSVTVEM 124
           D  G  ++T+R K+       S+H RW+ + G  TD +  +++V+RSS++  ++ + V +
Sbjct: 82  DGSGTPVVTLREKMV------SMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFL 135

Query: 125 YENPGE---EYQIEGNFWQRSCTIFNAMKES-VAEIRRKVDASTQVLLAKDVFLLSVKPG 180
             N  E   +++++G++ +RSC ++    ++ VA++ RK    + V L KD F ++V P 
Sbjct: 136 GHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQS-VFLGKDNFSVTVYPN 194

Query: 181 FDGAFAMGLVLVLDQIN 197
            D AF   LV++LD +N
Sbjct: 195 VDYAFIASLVVILDDVN 211

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF24|LOR10_ARATH Protein LURP-one-related 10 OS=Arabidopsis thaliana GN=At3g11740 PE=2 SV=2

 Score = 83.6 bits (205), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 96/194 (49%), Gaps = 13/194 (6%)

Query: 9   LVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAH 68
           +V+  +       L + +  +   +  F V +  G L+F+V    P     D+ +L+DA+
Sbjct: 3   IVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKE--PLFSISDKRILLDAY 60

Query: 69  GKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYENP 128
              +LT+R        + SLH RW  Y G+ TD    +++++RSS+I      ++++   
Sbjct: 61  DTPILTLREN------KVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAH 114

Query: 129 GEE-----YQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDG 183
            +E     + ++G++  RSC ++    +++     K   +  +L+ K  F ++V P  D 
Sbjct: 115 NKEMKICDFHVKGSWIDRSCVVYAGKSDAIVAQMHKKHTAQSILIGKSNFSVTVYPNVDF 174

Query: 184 AFAMGLVLVLDQIN 197
           AF + L+++LD IN
Sbjct: 175 AFIVSLIVILDDIN 188

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|A0MFH4|LOR16_ARATH Protein LURP-one-related 16 OS=Arabidopsis thaliana GN=At5g20640 PE=2 SV=2

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 106/204 (51%), Gaps = 11/204 (5%)

Query: 9   LVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAH 68
           +++  Y  + ET L V +        GF V N +  +VFRVD  G     K + +L +  
Sbjct: 12  VLSRRYSSESETVLVVRRRPPMVNGGGFVVSNSKQVVVFRVDGCGV-LGTKGKLLLRNGD 70

Query: 69  GKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRR---SSIIGRSSVTVEMY 125
           G  LL +R+          +H++WEG+  +    ++ +F+++    S ++  SS+ + ++
Sbjct: 71  GNDLLLIRKMGGIVQALNMVHNKWEGFGYDNEGTERLVFTLKDPKDSCLVQNSSIKILVH 130

Query: 126 ENP-------GEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVK 178
             P           +I+G+F +R+C I ++  +++A++R + +    V   KD++ + VK
Sbjct: 131 GKPPKISSTRNNYVEIKGSFAERACNIMDSDGKAIAKVRIEKEMEEMVGNKKDLYHVIVK 190

Query: 179 PGFDGAFAMGLVLVLDQINGDNYV 202
           P  D +F +GL+ +LD I+G++ +
Sbjct: 191 PNVDQSFIVGLIAILDYIHGESTI 214

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUF7|LOR6_ARATH Protein LURP-one-related 6 OS=Arabidopsis thaliana GN=At2g05910 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 99/195 (50%), Gaps = 13/195 (6%)

Query: 9   LVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAH 68
           +V+  Y    E  + V +        GF V + + ++VF++D  G     K E VL D+ 
Sbjct: 4   VVSKLYCSSMEEVMVVRRRPHVVNGGGFVVTDYKEKIVFKIDGCGV-LGTKGELVLRDSD 62

Query: 69  GKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVR--RSSIIGRSSVTVEMYE 126
           G  LL + +K    +   S+H++W+GYS +     KP+F++R  + S    +S ++ +  
Sbjct: 63  GNDLLLIHKKGGV-VQALSIHNKWKGYSYDYQGSPKPVFTLRDPKHSCFSITS-SIRISV 120

Query: 127 NPGEEY-QIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAF 185
            PG  Y  ++G F  R C+I ++    +A+++  + +       +D++ +  KP  D AF
Sbjct: 121 GPGNCYFDVKGYFPDRDCSIVDSKGNVIAQVKEWIGS-------RDIYKVVTKPSVDKAF 173

Query: 186 AMGLVLVLDQINGDN 200
             G++ VLD I G++
Sbjct: 174 VFGVIAVLDYIYGES 188

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ36|LOR1_ARATH Protein LURP-one-related 1 OS=Arabidopsis thaliana GN=At1g33840 PE=2 SV=2

 Score = 76.6 bits (187), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 12/196 (6%)

Query: 5   QAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVL 64
           +A V+V  +Y       L + +  L   +  F + N  G L+F+V    P     ++ +L
Sbjct: 23  KAGVIVDPKYCSLHPVDLAIVRKVLKITDGNFVITNAEGNLLFKVKD--PFFSLHEKRIL 80

Query: 65  MDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSS----V 120
           MD  G  +LT++ K+       ++H RW  + G  T+    +++V+RS+++  ++     
Sbjct: 81  MDGFGTKVLTLKGKIM------TMHDRWLVFRGGSTEEVDLLYTVKRSNMVQITTKLDVF 134

Query: 121 TVEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPG 180
             +  E    +Y++EG + + SC ++    + +    R+      VL  KD F L+V P 
Sbjct: 135 LADNIEQKKCDYRLEGVWLETSCFVYAGDSDIILAQMREKKTMQSVLFGKDNFCLTVNPN 194

Query: 181 FDGAFAMGLVLVLDQI 196
            D AF   L+++L +I
Sbjct: 195 VDYAFIASLIVILVEI 210

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH27|LOR4_ARATH Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410 PE=3 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 95/194 (48%), Gaps = 11/194 (5%)

Query: 5   QAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVL 64
           QAA+  +  Y+  +    TV+  SL +Q +G TVYN  GE+ +RV++Y  D    + H+ 
Sbjct: 7   QAAI--SSPYMSTERETFTVWMKSLVYQTNGLTVYNSNGEITYRVENY--DKCSNEVHI- 61

Query: 65  MDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEM 124
           MD HG  L T+R+K +  L      +R E  S   T+  KP   ++RSSI        E+
Sbjct: 62  MDLHGNILFTIRKK-KLWLFGSWYVYR-ECGSFTSTEEVKPCARIKRSSI---RDGDWEV 116

Query: 125 YENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGA 184
            +   E + I     + +  I +     +A+++ K  +S  + L +DV  L VKP  D +
Sbjct: 117 RDETNEVFWILRFDPKFAFQIIDIHGNIIAQVKPK-QSSNGITLGEDVLTLEVKPRVDHS 175

Query: 185 FAMGLVLVLDQING 198
             + LV V   I G
Sbjct: 176 LVVTLVTVYGLIKG 189

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
255553189	206	GTP binding protein, putative [Ricinus c	0.948	0.990	0.726	5e-83
224054420	201	predicted protein [Populus trichocarpa]	0.930	0.995	0.715	3e-81
224134504	205	predicted protein [Populus trichocarpa]	0.948	0.995	0.701	3e-80
351725395	219	uncharacterized protein LOC100527456 [Gl	0.911	0.894	0.710	8e-80
449436144	206	PREDICTED: protein LURP-one-related 12-l	0.948	0.990	0.677	8e-79
359806430	219	uncharacterized protein LOC100787085 [Gl	0.972	0.954	0.672	2e-78
147838908	207	hypothetical protein VITISV_034997 [Viti	0.944	0.980	0.701	4e-78
225442951	207	PREDICTED: protein LURP-one-related 12 [	0.944	0.980	0.696	2e-77
388501088	227	unknown [Lotus japonicus]	0.874	0.828	0.711	2e-76
18400907	220	protein LURP-one-related 12 [Arabidopsis	0.939	0.918	0.639	3e-73

>gi|255553189|ref|XP_002517637.1| GTP binding protein, putative [Ricinus communis] gi|223543269|gb|EEF44801.1| GTP binding protein, putative [Ricinus communis]

 Score =  312 bits (800), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 154/212 (72%), Positives = 174/212 (82%), Gaps = 8/212 (3%)

Query: 5   QAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYG-PDTRDKDEHV 63
           +A ++V   YIY++E HLTV KTSLFF NDGFTVY+CRGELVFRVDSYG PD R+  E V
Sbjct: 2   KAGLIVDSGYIYQEEKHLTVLKTSLFFANDGFTVYDCRGELVFRVDSYGGPDNRETAEVV 61

Query: 64  LMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVE 123
           LMDA+G+CLLTVR+K      RPSLHHRWEGY GER++GQKP+FSVRRSSIIGR SV VE
Sbjct: 62  LMDANGRCLLTVRKK------RPSLHHRWEGYLGERSEGQKPVFSVRRSSIIGRCSVAVE 115

Query: 124 MYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDG 183
           +Y NPGEEYQIEG+F  RSCT FNA+KESVAEIRRKVD ST V+L KDVF L +KPGFDG
Sbjct: 116 VYGNPGEEYQIEGSFANRSCTFFNAVKESVAEIRRKVDTSTHVVLGKDVFSLCLKPGFDG 175

Query: 184 AFAMGLVLVLDQINGDNYVESNGGRVDPVTED 215
           AFAMGLVLVLDQINGD+YVE     V P  E+
Sbjct: 176 AFAMGLVLVLDQINGDDYVEDE-SEVSPTAEE 206

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054420|ref|XP_002298251.1| predicted protein [Populus trichocarpa] gi|222845509|gb|EEE83056.1| predicted protein [Populus trichocarpa]

 Score =  306 bits (784), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 151/211 (71%), Positives = 171/211 (81%), Gaps = 11/211 (5%)

Query: 5   QAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVL 64
           +  ++V D +IY++E  LTV KTSLFF NDGFTVY+C+GELVFRV+SYGPDTRD+ E VL
Sbjct: 2   KGGLIVDDGFIYEEEKLLTVLKTSLFFANDGFTVYDCKGELVFRVESYGPDTRDQGEIVL 61

Query: 65  MDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEM 124
           MDAHG+CLLTVRRK      RPSLH RWEGY GE TDG +PIFSVRRSSIIGR SVTVE+
Sbjct: 62  MDAHGRCLLTVRRK------RPSLHQRWEGYIGEGTDGNRPIFSVRRSSIIGRCSVTVEV 115

Query: 125 YENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGA 184
           Y  PG EYQIEG+F  RSCTIFNA KES+AEIRRKVDAST VLL KDVF L +KPGFDGA
Sbjct: 116 YGKPGAEYQIEGSFANRSCTIFNAEKESMAEIRRKVDASTNVLLGKDVFSLCLKPGFDGA 175

Query: 185 FAMGLVLVLDQINGDNYVESNGGRVDPVTED 215
           FAMGLVL+LDQI GD+ V+ +     P TED
Sbjct: 176 FAMGLVLILDQITGDDAVDGH-----PTTED 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134504|ref|XP_002327421.1| predicted protein [Populus trichocarpa] gi|118487735|gb|ABK95691.1| unknown [Populus trichocarpa] gi|222835975|gb|EEE74396.1| predicted protein [Populus trichocarpa]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/211 (70%), Positives = 171/211 (81%), Gaps = 7/211 (3%)

Query: 5   QAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVL 64
           +  ++V D ++Y++E HLTVFKT LFF NDGFTVY+C+GELVFRVDSYGPD+RDK E VL
Sbjct: 2   KGGLVVDDGFVYEEEKHLTVFKTCLFFANDGFTVYDCKGELVFRVDSYGPDSRDKGELVL 61

Query: 65  MDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEM 124
           MDAHG+CLLTVRRK      RPSLH RWEGY GE TDG  PIFSVRR+S+IGR +VTVE+
Sbjct: 62  MDAHGRCLLTVRRK------RPSLHQRWEGYIGEGTDGSNPIFSVRRTSMIGRCTVTVEV 115

Query: 125 YENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGA 184
             NPGEEYQIEG+F  RSCTI N +KE+VAEIRRKVDAST V+L KDV  L +KPGFDGA
Sbjct: 116 CGNPGEEYQIEGSFATRSCTILNTVKEAVAEIRRKVDASTDVVLGKDVLSLCLKPGFDGA 175

Query: 185 FAMGLVLVLDQINGDNYVESNGGRVDPVTED 215
           FAMGLVL+LDQING + VE N  +  P TED
Sbjct: 176 FAMGLVLILDQINGYDSVE-NEVKESPTTED 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725395|ref|NP_001236323.1| uncharacterized protein LOC100527456 [Glycine max] gi|255632396|gb|ACU16548.1| unknown [Glycine max]

 Score =  302 bits (773), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 147/207 (71%), Positives = 168/207 (81%), Gaps = 11/207 (5%)

Query: 14  YIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLL 73
           Y++K+E HLTVFKTSLFF  DGFTVY+C+G+LVFRVDSYGPDTRD+DE VLMD +G+CLL
Sbjct: 19  YVFKEEIHLTVFKTSLFFAGDGFTVYDCKGQLVFRVDSYGPDTRDRDELVLMDPNGRCLL 78

Query: 74  TVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRS--SVTVEMYENPGEE 131
           TVRRK      RPSLH RWEG+ GER DG KPIFSVRR+SIIGRS  S+TVEMY+NPGEE
Sbjct: 79  TVRRK------RPSLHQRWEGFKGERMDGDKPIFSVRRASIIGRSRASLTVEMYDNPGEE 132

Query: 132 YQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVL 191
           YQI+G F QR CT+FN  KESVAEIRRKVD +T V+L K+VF L VKPGFD AFAMG VL
Sbjct: 133 YQIDGCFSQRCCTVFNVTKESVAEIRRKVDPTTSVVLGKEVFSLCVKPGFDAAFAMGFVL 192

Query: 192 VLDQINGDNYVESNGGR---VDPVTED 215
           VLDQING++YV+        V P TED
Sbjct: 193 VLDQINGEDYVDDRATTEPAVHPATED 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436144|ref|XP_004135854.1| PREDICTED: protein LURP-one-related 12-like [Cucumis sativus] gi|449509285|ref|XP_004163545.1| PREDICTED: protein LURP-one-related 12-like [Cucumis sativus]

 Score =  298 bits (764), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 143/211 (67%), Positives = 172/211 (81%), Gaps = 7/211 (3%)

Query: 5   QAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVL 64
           Q  V+V + ++Y ++ HLTV KTSLFF  DG+TVY+C+GEL+FRVDSYGPD RDKDE VL
Sbjct: 3   QLPVIVEEAFVYDEDKHLTVMKTSLFFAGDGYTVYDCKGELLFRVDSYGPDARDKDEIVL 62

Query: 65  MDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEM 124
           MDA GKCLLTVRRK      RPSLHHRWEG+ GERT+GQKPIF+VRRSSIIGRSS+TVE+
Sbjct: 63  MDAQGKCLLTVRRK------RPSLHHRWEGFLGERTEGQKPIFNVRRSSIIGRSSMTVEV 116

Query: 125 YENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGA 184
            ++ G+EY IEG F  R CTIF+A KE+VAEI+RKVDA+T V+L KDVF L +KPGFDGA
Sbjct: 117 LKDSGDEYHIEGCFGNRHCTIFDAAKEAVAEIKRKVDATTNVVLGKDVFSLIIKPGFDGA 176

Query: 185 FAMGLVLVLDQINGDNYVESNGGRVDPVTED 215
           FAMGLVLVLDQINGD++ +     +DP  +D
Sbjct: 177 FAMGLVLVLDQINGDSF-DDEDTEMDPTADD 206

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806430|ref|NP_001240988.1| uncharacterized protein LOC100787085 [Glycine max] gi|255637956|gb|ACU19294.1| unknown [Glycine max]

 Score =  297 bits (761), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 148/220 (67%), Positives = 170/220 (77%), Gaps = 11/220 (5%)

Query: 1   MKADQAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKD 60
           M  +   V V D Y+ K+E HLTV KTSLFF  DGF+VY+C+G+LVFRVDSYGPDTRD D
Sbjct: 6   MAENMKEVEVEDGYVLKEEIHLTVLKTSLFFAGDGFSVYDCKGQLVFRVDSYGPDTRDID 65

Query: 61  EHVLMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRS-- 118
           E VLMD +G+CLLTVRRK      RPSLH RWEG+ GER DG KPIFSVRR+SIIGRS  
Sbjct: 66  ELVLMDPNGRCLLTVRRK------RPSLHQRWEGFKGERMDGDKPIFSVRRASIIGRSRA 119

Query: 119 SVTVEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVK 178
           S+TVEMY+NPGEEYQIEG F QR CT+FN  KESVAEI RKVD +T V+L K+VF L VK
Sbjct: 120 SLTVEMYDNPGEEYQIEGCFSQRCCTVFNVTKESVAEISRKVDPTTSVVLGKEVFSLCVK 179

Query: 179 PGFDGAFAMGLVLVLDQINGDNYVE---SNGGRVDPVTED 215
           PGFD AFAMG VLVLDQI+G++YV+   +    V P TED
Sbjct: 180 PGFDAAFAMGFVLVLDQISGEDYVDNIATTEPTVHPATED 219

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838908|emb|CAN65825.1| hypothetical protein VITISV_034997 [Vitis vinifera]

 Score =  296 bits (758), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 148/211 (70%), Positives = 169/211 (80%), Gaps = 8/211 (3%)

Query: 5   QAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVL 64
           +A  +V + +IY++E  LTVFKTSLFF  DGFTVY+ +G LVFRVDSY PD RDK E +L
Sbjct: 2   KAGAVVEEGFIYEEEIQLTVFKTSLFFTGDGFTVYDPKGTLVFRVDSYEPDARDKGELIL 61

Query: 65  MDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEM 124
           MDA G+CLLTVRRK      RPSLH RWEG+ GE  DG+KPIFSV+RSSIIGRS VTVEM
Sbjct: 62  MDASGRCLLTVRRK------RPSLHQRWEGFLGEGIDGKKPIFSVKRSSIIGRSGVTVEM 115

Query: 125 YENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGA 184
           Y NPGE+YQIEG+F  R CTIFNA KESVAEIRRKVDAST V+L KDVF L +KPGFDGA
Sbjct: 116 YSNPGEDYQIEGSFSHRCCTIFNATKESVAEIRRKVDASTHVMLGKDVFTLCLKPGFDGA 175

Query: 185 FAMGLVLVLDQINGDNYVESNGGRVDPVTED 215
           FAMGLVLVLDQI+ D+Y E +G +VDP   D
Sbjct: 176 FAMGLVLVLDQIS-DDY-EDDGLQVDPAAND 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442951|ref|XP_002266582.1| PREDICTED: protein LURP-one-related 12 [Vitis vinifera] gi|297743462|emb|CBI36329.3| unnamed protein product [Vitis vinifera]

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 147/211 (69%), Positives = 168/211 (79%), Gaps = 8/211 (3%)

Query: 5   QAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVL 64
           +A  +V + +IY++E  LTVFKTSLFF  DGFTVY+ +G LVFRVDSY PD RDK E +L
Sbjct: 2   KAGAVVEEGFIYEEEIQLTVFKTSLFFTGDGFTVYDPKGTLVFRVDSYEPDARDKGELIL 61

Query: 65  MDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEM 124
           MDA G+CLLTVRRK      RPSLH RWEG+ GE  DG+KPIFSV+RSSIIGRS VTVEM
Sbjct: 62  MDASGRCLLTVRRK------RPSLHQRWEGFLGEGIDGKKPIFSVKRSSIIGRSGVTVEM 115

Query: 125 YENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGA 184
           Y NPGE+YQIEG+F  R CTIFNA KESVAEIRRKVDAST V+L KDVF L +KPGF GA
Sbjct: 116 YSNPGEDYQIEGSFSHRCCTIFNAAKESVAEIRRKVDASTHVMLGKDVFTLCLKPGFGGA 175

Query: 185 FAMGLVLVLDQINGDNYVESNGGRVDPVTED 215
           FAMGLVLVLDQI+ D+Y E +G +VDP   D
Sbjct: 176 FAMGLVLVLDQIS-DDY-EDDGLQVDPAAND 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501088|gb|AFK38610.1| unknown [Lotus japonicus]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/194 (71%), Positives = 160/194 (82%), Gaps = 6/194 (3%)

Query: 7   AVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMD 66
           + +V DE++  +E HLTV KTSLFF  DGFTVY+C+GELVFRVDSYGPD+ D DE VLMD
Sbjct: 18  SFVVEDEHVSNEEIHLTVLKTSLFFAGDGFTVYDCKGELVFRVDSYGPDSSDTDELVLMD 77

Query: 67  AHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYE 126
            +G+CLLTVRRK      RPSLH RWEG+ GER+DG KPIFSV+R+SIIGRSSVTVE+Y 
Sbjct: 78  PNGRCLLTVRRK------RPSLHQRWEGFKGERSDGDKPIFSVKRASIIGRSSVTVEVYN 131

Query: 127 NPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFA 186
           +PGEEYQIEG F QRSCT FN MKESVAEI RKVD +T V+L K+VF LSVKPGFD AFA
Sbjct: 132 SPGEEYQIEGCFSQRSCTFFNMMKESVAEIHRKVDPTTGVMLGKEVFSLSVKPGFDAAFA 191

Query: 187 MGLVLVLDQINGDN 200
           MG VLVLD I+G++
Sbjct: 192 MGFVLVLDHISGES 205

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400907|ref|NP_566526.1| protein LURP-one-related 12 [Arabidopsis thaliana] gi|75274407|sp|Q9LVZ8.1|LOR12_ARATH RecName: Full=Protein LURP-one-related 12 gi|11994353|dbj|BAB02312.1| unnamed protein product [Arabidopsis thaliana] gi|17380788|gb|AAL36224.1| unknown protein [Arabidopsis thaliana] gi|20259609|gb|AAM14161.1| unknown protein [Arabidopsis thaliana] gi|332642208|gb|AEE75729.1| protein LURP-one-related 12 [Arabidopsis thaliana]

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 133/208 (63%), Positives = 165/208 (79%), Gaps = 6/208 (2%)

Query: 8   VLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDA 67
           ++V   Y+Y+++  LTV KTSLF+  DGF  Y+CRG+++FRVDSYGPDTRD DE VLMDA
Sbjct: 19  IVVDKAYLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDA 78

Query: 68  HGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYEN 127
            GKCLLTV+RK      RP+LH RWEG+ GER++GQKPIFSVRRSSIIGR ++ VE+Y+ 
Sbjct: 79  TGKCLLTVKRK------RPTLHQRWEGFLGERSEGQKPIFSVRRSSIIGRCTMEVEVYDG 132

Query: 128 PGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAM 187
            GEEY I+G+F QRSC I++  K +VAEI+RKVDAST V+L +DVF L +KPGFDGAFAM
Sbjct: 133 TGEEYIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAM 192

Query: 188 GLVLVLDQINGDNYVESNGGRVDPVTED 215
           GLV+VLDQINGD+ VE    +V P  ED
Sbjct: 193 GLVVVLDQINGDDPVEIGDEQVHPFVED 220

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2093242	220	AT3G15810 "AT3G15810" [Arabido	0.934	0.913	0.581	1.5e-60
TAIR|locus:2016299	210	AT1G80120 "AT1G80120" [Arabido	0.953	0.976	0.593	2.5e-58
TAIR|locus:2064179	196	AT2G38640 "AT2G38640" [Arabido	0.772	0.846	0.395	8e-21
TAIR|locus:2160427	221	AT5G41590 "AT5G41590" [Arabido	0.302	0.294	0.439	8.9e-16
TAIR|locus:2181082	217	AT5G01750 "AT5G01750" [Arabido	0.865	0.857	0.256	7.9e-14
TAIR|locus:2064686	191	AT2G05910 "AT2G05910" [Arabido	0.851	0.958	0.252	3.4e-13
TAIR|locus:2180459	215	AT5G20640 "AT5G20640" [Arabido	0.897	0.897	0.254	3.4e-13
TAIR|locus:2081481	194	AT3G11740 "AT3G11740" [Arabido	0.851	0.943	0.237	3.9e-12
TAIR|locus:2197036	217	AT1G53870 "AT1G53870" [Arabido	0.753	0.746	0.264	5.1e-10
TAIR|locus:2091040	230	AT3G14260 "AT3G14260" [Arabido	0.344	0.321	0.341	1.2e-09

TAIR|locus:2093242 AT3G15810 "AT3G15810" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 121/208 (58%), Positives = 151/208 (72%)

Query:     9 LVADE-YIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDA 67
             +V D+ Y+Y+++  LTV KTSLF+  DGF  Y+CRG+++FRVDSYGPDTRD DE VLMDA
Sbjct:    19 IVVDKAYLYQEDKPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDA 78

Query:    68 HGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPXXXXXXXXXXXXXXXXXEMYEN 127
              GKCLLTV+RK      RP+LH RWEG+ GER++GQKP                 E+Y+ 
Sbjct:    79 TGKCLLTVKRK------RPTLHQRWEGFLGERSEGQKPIFSVRRSSIIGRCTMEVEVYDG 132

Query:   128 PGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAM 187
              GEEY I+G+F QRSC I++  K +VAEI+RKVDAST V+L +DVF L +KPGFDGAFAM
Sbjct:   133 TGEEYIIDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAM 192

Query:   188 GLVLVLDQINGDNYVESNGGRVDPVTED 215
             GLV+VLDQINGD+ VE    +V P  ED
Sbjct:   193 GLVVVLDQINGDDPVEIGDEQVHPFVED 220

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016299 AT1G80120 "AT1G80120" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 127/214 (59%), Positives = 149/214 (69%)

Query:     5 QAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYG-PDTRDKDEHV 63
             +  +LV DE+I+ +E  LTV KTSLFF  DGFTVY+C+G LVFRVDSYG P+TRD DE V
Sbjct:     2 KGGLLVDDEFIHGEERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVV 61

Query:    64 LMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPXXXXXXXXXXXXXXXXXE 123
             LMDAHG+CLLT+RRK      RPSL  RWEGY GER+DGQKP                 E
Sbjct:    62 LMDAHGRCLLTLRRK------RPSLRRRWEGYLGERSDGQKPIFGVRRSSIIGRNSVTVE 115

Query:   124 MY-ENPGEEYQIEGNFWQRSCTIFNA-MKESVAEIRRKVDASTQVLLAKDVFLLSVKPGF 181
             +Y +    EY IEG+F  R+CT+  A  +  VAEIRRKVDAST V+L KDVF L+VKPGF
Sbjct:   116 VYGDYQCSEYLIEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGF 175

Query:   182 DGAFAMGLVLVLDQINGDNYVESNGGRVDPVTED 215
             DGAFAMGLVLVLDQI GD+ +E    +V P  ED
Sbjct:   176 DGAFAMGLVLVLDQIYGDDLLEVGEEQVHPSAED 209

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2064179 AT2G38640 "AT2G38640" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 70/177 (39%), Positives = 89/177 (50%)

Query:    22 LTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQF 81
             LTV+K SL F  DGFTVYN  GELVFRVD+Y    RD    VLMDA G  LL++RRK   
Sbjct:    25 LTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPRDNI--VLMDASGFPLLSIRRK--- 79

Query:    82 QLMRPSLHHRWEGYSGERTDGQKPXXXXXXXXXXXXXXXXXEMYENPGEEYQIEGNFWQR 141
                + SL   W  Y GE T+                      +       Y+IEG++ QR
Sbjct:    80 ---KLSLGDCWMVYDGE-TERDPIFTARKNVSIISNRKSLAWVSAKKTVLYEIEGSYGQR 135

Query:   142 SCTIFNAM--KESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQI 196
             SC I +    K+  AEI+RK      V   KDV+ L V+   +   AM L ++LDQ+
Sbjct:   136 SCKILDERRNKKKTAEIKRKETVIGGVAFGKDVYKLIVESEMEPRVAMALTIILDQM 192

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160427 AT5G41590 "AT5G41590" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 8.9e-16, Sum P(2) = 8.9e-16
 Identities = 29/66 (43%), Positives = 41/66 (62%)

Query:   132 YQIEGNFWQRSCTIFNA-MKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLV 190
             Y I+G++  +SC I +  + ++V EI+RK   +  V    DVF L V PGFD   AM LV
Sbjct:   154 YIIKGSYRCKSCKIVHVPLNKTVVEIKRKEVRTKGVRFGSDVFDLVVNPGFDTGLAMALV 213

Query:   191 LVLDQI 196
             L+LDQ+
Sbjct:   214 LLLDQM 219

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181082 AT5G01750 "AT5G01750" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 52/203 (25%), Positives = 98/203 (48%)

Query:     5 QAAVLVAD-EYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHV 63
             QA  +V D +Y       + + +  +   +  F + +  G L+F+V    P     D+ V
Sbjct:    22 QAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKE--PVFGLHDKRV 79

Query:    64 LMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPXXXXXXXXXXXXXXXXXE 123
             L+D  G  ++T+R K+       S+H RW+ + G  TD Q+                  +
Sbjct:    80 LLDGSGTPVVTLREKMV------SMHDRWQVFRGGSTD-QRDLLYTVKRSSMLQLKTKLD 132

Query:   124 MY--ENPGE---EYQIEGNFWQRSCTIFNAMKES-VAEIRRKVDASTQVLLAKDVFLLSV 177
             ++   N  E   +++++G++ +RSC ++    ++ VA++ RK    + V L KD F ++V
Sbjct:   133 VFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQS-VFLGKDNFSVTV 191

Query:   178 KPGFDGAFAMGLVLVLDQINGDN 200
              P  D AF   LV++LD +N ++
Sbjct:   192 YPNVDYAFIASLVVILDDVNRED 214

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2064686 AT2G05910 "AT2G05910" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 49/194 (25%), Positives = 88/194 (45%)

Query:     9 LVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAH 68
             +V+  Y    E  + V +        GF V + + ++VF++D  G     K E VL D+ 
Sbjct:     4 VVSKLYCSSMEEVMVVRRRPHVVNGGGFVVTDYKEKIVFKIDGCGV-LGTKGELVLRDSD 62

Query:    69 GKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPXXXXXXXXXX-XXXXXXXEMYEN 127
             G  LL + +K    +   S+H++W+GYS +     KP                   +   
Sbjct:    63 GNDLLLIHKKGGV-VQALSIHNKWKGYSYDYQGSPKPVFTLRDPKHSCFSITSSIRISVG 121

Query:   128 PGEEY-QIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFA 186
             PG  Y  ++G F  R C+I ++    +A+++  + +       +D++ +  KP  D AF 
Sbjct:   122 PGNCYFDVKGYFPDRDCSIVDSKGNVIAQVKEWIGS-------RDIYKVVTKPSVDKAFV 174

Query:   187 MGLVLVLDQINGDN 200
              G++ VLD I G++
Sbjct:   175 FGVIAVLDYIYGES 188

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180459 AT5G20640 "AT5G20640" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 52/204 (25%), Positives = 94/204 (46%)

Query:     9 LVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAH 68
             +++  Y  + ET L V +        GF V N +  +VFRVD  G     K + +L +  
Sbjct:    12 VLSRRYSSESETVLVVRRRPPMVNGGGFVVSNSKQVVVFRVDGCGV-LGTKGKLLLRNGD 70

Query:    69 GKCLLTVRRKVQFQLMRPSLHHRWEG--YSGERTD-------GQKPXXXXXXXXXXXXXX 119
             G  LL +R+          +H++WEG  Y  E T+         K               
Sbjct:    71 GNDLLLIRKMGGIVQALNMVHNKWEGFGYDNEGTERLVFTLKDPKDSCLVQNSSIKILVH 130

Query:   120 XXXEMYENPGEEY-QIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVK 178
                    +    Y +I+G+F +R+C I ++  +++A++R + +    V   KD++ + VK
Sbjct:   131 GKPPKISSTRNNYVEIKGSFAERACNIMDSDGKAIAKVRIEKEMEEMVGNKKDLYHVIVK 190

Query:   179 PGFDGAFAMGLVLVLDQINGDNYV 202
             P  D +F +GL+ +LD I+G++ +
Sbjct:   191 PNVDQSFIVGLIAILDYIHGESTI 214

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2081481 AT3G11740 "AT3G11740" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 47/198 (23%), Positives = 92/198 (46%)

Query:     9 LVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAH 68
             +V+  +       L + +  +   +  F V +  G L+F+V    P     D+ +L+DA+
Sbjct:     3 IVSPNFCAPYPIELGIVRKVMTLTDGNFAVTDVNGNLLFKVKE--PLFSISDKRILLDAY 60

Query:    69 GKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPXXXXXXXXXXXXXXXXXEMYENP 128
                +LT+R        + SLH RW  Y G+ TD                     +++   
Sbjct:    61 DTPILTLREN------KVSLHDRWLVYRGKSTDQSDLLYTLKRSSMIQIMKPKLDIFLAH 114

Query:   129 GEE-----YQIEGNFWQRSCTIFNAMKES-VAEIRRKVDASTQVLLAKDVFLLSVKPGFD 182
              +E     + ++G++  RSC ++    ++ VA++ +K  A + +L+ K  F ++V P  D
Sbjct:   115 NKEMKICDFHVKGSWIDRSCVVYAGKSDAIVAQMHKKHTAQS-ILIGKSNFSVTVYPNVD 173

Query:   183 GAFAMGLVLVLDQINGDN 200
              AF + L+++LD IN ++
Sbjct:   174 FAFIVSLIVILDDINRED 191

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197036 AT1G53870 "AT1G53870" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 50/189 (26%), Positives = 88/189 (46%)

Query:    14 YIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRD-KDEHVLMDAHGKCL 72
             Y+  ++   T++  SL F + G TV++ +G L++RVD+Y  D++   +E   MD +GK L
Sbjct:    36 YLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNY--DSKSWSNEVYFMDLNGKIL 93

Query:    73 LTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPXXXXXXXXXXXXXXXXXEMYENPGEEY 132
              T+R+K      +      WEGY+   T                        Y+      
Sbjct:    94 FTLRQK------KLGFFKSWEGYNSTGT------RFRLRKIFKILPRESSSSYKVVMGSR 141

Query:   133 QIEGNFWQRSC-TIFN-----AMKES----VAEIRRKVDASTQVLLAKDVFLLSVKPGFD 182
              ++G+  Q+SC  I N     A+K+     +AE++ K+   + + L  DV  + V+P  D
Sbjct:   142 IVDGD--QQSCYKIVNRGSVFAIKDGSGRLMAEVKNKLSDISGLDLGDDVLTMMVEPQLD 199

Query:   183 GAFAMGLVL 191
              +  MG+V+
Sbjct:   200 HSLIMGIVI 208

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2091040 AT3G14260 "AT3G14260" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 28/82 (34%), Positives = 48/82 (58%)

Query:    14 YIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLL 73
             Y+  ++   T++  SL F  +G TV++ +G +++RVD+Y  +++   E  LMD  G  L 
Sbjct:    43 YLTTEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNY--NSKSCREVYLMDLSGHVLF 100

Query:    74 TVRRKVQFQLMRPSLHHRWEGY 95
             T+RR+ +F L +      WEGY
Sbjct:   101 TLRRQ-KFGLFKT-----WEGY 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LVZ8	LOR12_ARATH	No assigned EC number	0.6394	0.9395	0.9181	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
pfam04525	185	pfam04525, Tub_2, Tubby C 2	8e-59
COG4894	159	COG4894, COG4894, Uncharacterized conserved protei	3e-11

>gnl|CDD|218129 pfam04525, Tub_2, Tubby C 2

 Score =  183 bits (465), Expect = 8e-59
 Identities = 84/194 (43%), Positives = 116/194 (59%), Gaps = 19/194 (9%)

Query: 8   VLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDA 67
           V+V+ EY+  +   LTV++ SL F  DGFTVY+  G LVFRVD Y       DE VLMD+
Sbjct: 2   VVVSSEYLSPEPEDLTVWRKSLVFNGDGFTVYDSNGNLVFRVDGYA--FGLSDERVLMDS 59

Query: 68  HGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIG------RSSVT 121
            G  LLT+RRK      + SLH RWE Y GE T+G+ P+F+VRRSSI+         S  
Sbjct: 60  SGNPLLTIRRK------KLSLHDRWEVYRGEGTEGKDPLFTVRRSSIVQLKTSSSVFSKR 113

Query: 122 ---VEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVK 178
              V + +    ++ I+G+F  RSC I++   + +AE++R+   S  V L KDV+ ++VK
Sbjct: 114 NSNVIVDDEKNCDFDIKGSFLDRSCKIYDDSDKLIAEVKRQT--SKGVFLGKDVYTVTVK 171

Query: 179 PGFDGAFAMGLVLV 192
           P  D AF M LV+V
Sbjct: 172 PEVDYAFIMALVVV 185

The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens. Length = 185

>gnl|CDD|227231 COG4894, COG4894, Uncharacterized conserved protein [Function unknown]

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 25/171 (14%)

Query: 26  KTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMR 85
           K  +F   D F +Y+  GE  F+V+  G      D   + DA GK L+++ +K+    + 
Sbjct: 11  KQKMFSFGDAFHIYDRDGEEAFKVE--GSFFSIGDTLTITDASGKTLVSIEQKLLS--LL 66

Query: 86  PSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYENPGEEYQIEGNFWQRSCTI 145
           P           E +DG   +  VR+     + + + + +E  G  ++I GN W      
Sbjct: 67  PRY---------EISDGGGTVCEVRK-----KVTFSRDKFEIDGLNWEIHGNIWD----- 107

Query: 146 FNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQI 196
                     +R +V  S +    +D + L V P  D    + + + LD +
Sbjct: 108 DEFKLTDGENVRAEV--SKKWFSWRDTYHLQVAPDEDALLIIAIAVALDMV 156

Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	100.0
COG4894	159	Uncharacterized conserved protein [Function unknow	100.0
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	99.64
COG4894	159	Uncharacterized conserved protein [Function unknow	98.38
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	97.88
KOG0621	292	consensus Phospholipid scramblase [Cell wall/membr	97.87
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	96.51

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=100.00  E-value=5.2e-45  Score=301.56  Aligned_cols=177  Identities=42%  Similarity=0.685  Sum_probs=109.7

Q ss_pred             eEeccCccCCcceEEEEEEEeceeeCCCeEEEeCCCCEEEEEEecCCCCCCCCeEEEEcCCCCeEEEEEEeccccccCcc
Q 027996            8 VLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPS   87 (215)
Q Consensus         8 ~~v~~~~~~~~~~~l~v~~k~~~~~~d~f~V~D~~G~~vf~V~g~~~~~s~~~k~~l~D~~G~~L~~i~~k~~~~~~~~s   87 (215)
                      ++|+++||+++|++|+||+|.+++++++|+|+|++|+++|+|+| ++.+++++++.|+|++|+||++|++|      +++
T Consensus         2 ~vv~~~~~~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g-~~~~s~~~~~~l~D~~G~~L~~i~~k------~~~   74 (187)
T PF04525_consen    2 VVVDAQYCSPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDG-GKFFSIGKKRTLMDASGNPLFTIRRK------LFS   74 (187)
T ss_dssp             -SS-GGGB-SS-EEEEEE----------EEEEETTS-EEEEEE---SCTTBTTEEEEE-TTS-EEEEEE-----------
T ss_pred             cEECHHHcCCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEE-ecccCCCCEEEEECCCCCEEEEEEee------ecc
Confidence            57999999999999999999998999999999999999999999 44689999999999999999999999      999


Q ss_pred             ccceeEEEEcCCCCCCceEEEEEeecccC-CceEEEEEeC--------CCCccEEEEeeecCceeEEEeCCCcEEEEEEe
Q 027996           88 LHHRWEGYSGERTDGQKPIFSVRRSSIIG-RSSVTVEMYE--------NPGEEYQIEGNFWQRSCTIFNAMKESVAEIRR  158 (215)
Q Consensus        88 ~~~~w~v~~~~~~~~~~~l~~vkk~~~~~-~~~~~V~l~~--------~~~~~~~v~G~~~~~~~~I~~~~g~~VA~V~r  158 (215)
                      ++++|++|.+++.++++++|+||+++.+. ++++.+++.+        .+.++|+|+||||+++|+|++.+|++||+|+|
T Consensus        75 l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~~~I~~~~g~~VA~i~r  154 (187)
T PF04525_consen   75 LRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRSFTIYDSGGRVVAEISR  154 (187)
T ss_dssp             ---EEEEEETT---GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT--EEEECC--EEEEEEE
T ss_pred             cceEEEEEECCCCccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcEEEEEEcCCCEEEEEec
Confidence            99999999998766667999999997653 4577777752        14568999999999999999655999999999


Q ss_pred             eeccccceEeeeceEEEEEeCCCCHHHHHHHHHH
Q 027996          159 KVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLV  192 (215)
Q Consensus       159 k~~~~~~~~~g~dtY~v~V~pgvD~ali~alvv~  192 (215)
                      |+. .++++.|+|+|.|+|+||+|++|++|||||
T Consensus       155 k~~-~k~~~~~~dty~l~V~pg~D~~lv~alvvi  187 (187)
T PF04525_consen  155 KYS-SKKWFSGRDTYTLTVAPGVDQALVVALVVI  187 (187)
T ss_dssp             -----------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred             ccc-eeeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence            885 777889999999999999999999999987

; PDB: 1ZXU_A 2Q4M_A.

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.7e-35  Score=231.32  Aligned_cols=154  Identities=25%  Similarity=0.442  Sum_probs=142.2

Q ss_pred             eEEEEEEEeceeeCCCeEEEeCCCCEEEEEEecCCCCCCCCeEEEEcCCCCeEEEEEEeccccccCccccceeEEEEcCC
Q 027996           20 THLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGER   99 (215)
Q Consensus        20 ~~l~v~~k~~~~~~d~f~V~D~~G~~vf~V~g~~~~~s~~~k~~l~D~~G~~L~~i~~k~~~~~~~~s~~~~w~v~~~~~   99 (215)
                      .+|.+++| +++.||+|.|+|.+|+.+|+|+|  ++|++++.+++.|++|.+|.+|++|      +++++|+|++..|++
T Consensus         6 ~tl~mkQk-~~~~gd~f~I~d~dgE~af~VeG--s~f~i~dtlti~Da~G~~l~~i~~k------ll~l~~~yeI~d~~g   76 (159)
T COG4894           6 ITLFMKQK-MFSFGDAFHIYDRDGEEAFKVEG--SFFSIGDTLTITDASGKTLVSIEQK------LLSLLPRYEISDGGG   76 (159)
T ss_pred             HhHhhhhh-hhhcccceEEECCCCcEEEEEee--eEEeeCceEEEEecCCCChHHHHHH------HhhccceeEEEcCCC
Confidence            36788888 68889999999999999999999  9999999999999999999999999      999999999999873


Q ss_pred             CCCCceEEEEEeecccCCceEEEEEeCCCCccEEEEeeecCceeEEEeCCCcEEEEEEeeeccccceEeeeceEEEEEeC
Q 027996          100 TDGQKPIFSVRRSSIIGRSSVTVEMYENPGEEYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKP  179 (215)
Q Consensus       100 ~~~~~~l~~vkk~~~~~~~~~~V~l~~~~~~~~~v~G~~~~~~~~I~~~~g~~VA~V~rk~~~~~~~~~g~dtY~v~V~p  179 (215)
                          . +|.++|+.+|.|+++++.     +.+|+++||+|+.+|++.++ ++++|+|+|||      +.|+|||.|+|+|
T Consensus        77 ----~-~~~vrKK~tf~Rdk~e~d-----~~~~eihGNi~d~efkl~dg-~~~~aeVsKkw------f~~rdTY~l~vap  139 (159)
T COG4894          77 ----T-VCEVRKKVTFSRDKFEID-----GLNWEIHGNIWDDEFKLTDG-ENVRAEVSKKW------FSWRDTYHLQVAP  139 (159)
T ss_pred             ----C-EEEEEEEEEEEeeeEEEc-----CCCeEEecceeceEEEEecC-Cceehhheeee------EeccceEEEEEcC
Confidence                3 999999999888888863     56699999999999999999 78999999999      5699999999999


Q ss_pred             CCCHHHHHHHHHHhcccccC
Q 027996          180 GFDGAFAMGLVLVLDQINGD  199 (215)
Q Consensus       180 gvD~ali~alvv~lD~i~~~  199 (215)
                      +.|.++|+++|||||++.++
T Consensus       140 de~a~lii~i~VaLD~v~~~  159 (159)
T COG4894         140 DEDALLIIAIAVALDMVLYN  159 (159)
T ss_pred             chhhHHHHHHHHHHHHHhcC
Confidence            99999999999999998763

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=99.64  E-value=3e-14  Score=120.25  Aligned_cols=180  Identities=17%  Similarity=0.206  Sum_probs=131.6

Q ss_pred             ccCCcceEEEEEEEecee-------eCCCeEEEeCCCCEEEEEEecCCCC-------CCCCeEEEEcCCCCeEEEEEEec
Q 027996           14 YIYKQETHLTVFKTSLFF-------QNDGFTVYNCRGELVFRVDSYGPDT-------RDKDEHVLMDAHGKCLLTVRRKV   79 (215)
Q Consensus        14 ~~~~~~~~l~v~~k~~~~-------~~d~f~V~D~~G~~vf~V~g~~~~~-------s~~~k~~l~D~~G~~L~~i~~k~   79 (215)
                      |.+.-. .+.|+++....       ..+.|.|+|.+|+.+|.+......+       ..+-++.++|+.|+++++++|..
T Consensus        17 ~L~~~~-~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~   95 (221)
T PF03803_consen   17 YLAGLD-QLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPF   95 (221)
T ss_pred             HHhCCC-EEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCC
Confidence            444444 56777775532       3578999999999999887643111       12445789999999999999983


Q ss_pred             cccccCccccceeEEEEcCCCCCCceEEEEEeecccCCceEEEEEeCCCCccEEEEee------ecCceeEEEeCCCcEE
Q 027996           80 QFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSIIGRSSVTVEMYENPGEEYQIEGN------FWQRSCTIFNAMKESV  153 (215)
Q Consensus        80 ~~~~~~~s~~~~w~v~~~~~~~~~~~l~~vkk~~~~~~~~~~V~l~~~~~~~~~v~G~------~~~~~~~I~~~~g~~V  153 (215)
                      ++..-......+.+|+.+.   | +++.+|++++.+.+++++|+-++ +..-+.|+|.      +.+..|.|++.+|+.|
T Consensus        96 ~c~~C~~~~~~~~~V~~p~---g-~~iG~I~q~~~~~~~~f~I~d~~-~~~~~~I~gp~~~~~~~~~~~F~I~~~~~~~v  170 (221)
T PF03803_consen   96 KCCSCCPCCLQEMEVESPP---G-NLIGSIRQPFSCCRPNFDIFDAN-GNPIFTIKGPCCCCSCCCDWEFEIKDPNGQEV  170 (221)
T ss_pred             cceecccccceeEEEecCC---C-cEEEEEEEcCcccceEEEEEECC-CceEEEEeCCcceeccccceeeeeecccCcEE
Confidence            2110000113556676654   3 68999999988778899986544 3456888887      4578899999778999


Q ss_pred             EEEEeeeccccc-eEeeeceEEEEEeCCCCH---HHHHHHHHHhcccccC
Q 027996          154 AEIRRKVDASTQ-VLLAKDVFLLSVKPGFDG---AFAMGLVLVLDQINGD  199 (215)
Q Consensus       154 A~V~rk~~~~~~-~~~g~dtY~v~V~pgvD~---ali~alvv~lD~i~~~  199 (215)
                      |+|+|+|.+... .+...|.|.|+..+..|.   |+++|.++.+|.++-+
T Consensus       171 g~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~Fe  220 (221)
T PF03803_consen  171 GSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMYFE  220 (221)
T ss_pred             EEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhhhc
Confidence            999999965543 455789999999999886   7999999999998765

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=1e-06  Score=69.69  Aligned_cols=70  Identities=17%  Similarity=0.189  Sum_probs=60.1

Q ss_pred             CCcceEEEEEEEeceeeCCCeEEEeCCCCEEEEEEecCCCCCCCCeEEEEcCCCCeEEEEEEeccccccCccccceeEEE
Q 027996           16 YKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPSLHHRWEGY   95 (215)
Q Consensus        16 ~~~~~~l~v~~k~~~~~~d~f~V~D~~G~~vf~V~g~~~~~s~~~k~~l~D~~G~~L~~i~~k~~~~~~~~s~~~~w~v~   95 (215)
                      ...+.++.|.=+ .+..+|.|+|+|+.|.+++.++.  +++++..+..|-|++|+ .+.+++|      ..-++++|++-
T Consensus        26 ~dgE~af~VeGs-~f~i~dtlti~Da~G~~l~~i~~--kll~l~~~yeI~d~~g~-~~~vrKK------~tf~Rdk~e~d   95 (159)
T COG4894          26 RDGEEAFKVEGS-FFSIGDTLTITDASGKTLVSIEQ--KLLSLLPRYEISDGGGT-VCEVRKK------VTFSRDKFEID   95 (159)
T ss_pred             CCCcEEEEEeee-EEeeCceEEEEecCCCChHHHHH--HHhhccceeEEEcCCCC-EEEEEEE------EEEEeeeEEEc
Confidence            345778888866 57789999999999999999999  99999999999999999 8899999      44458888763

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=97.88  E-value=0.00016  Score=59.64  Aligned_cols=72  Identities=13%  Similarity=0.147  Sum_probs=41.5

Q ss_pred             cceEEEEEE-EeceeeCCCeEEEeCCCCEEEEEEecCCCCCCCCeEEEEcCCCC----eEEEEEEeccccccCcccccee
Q 027996           18 QETHLTVFK-TSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGK----CLLTVRRKVQFQLMRPSLHHRW   92 (215)
Q Consensus        18 ~~~~l~v~~-k~~~~~~d~f~V~D~~G~~vf~V~g~~~~~s~~~k~~l~D~~G~----~L~~i~~k~~~~~~~~s~~~~w   92 (215)
                      ....|+|.. + .+..++...++|.+|++++++.-  +.+++..+..++++++.    ++++|+++.     .+..++.-
T Consensus        37 G~~vf~V~g~~-~~s~~~~~~l~D~~G~~L~~i~~--k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~-----~~~~~~~~  108 (187)
T PF04525_consen   37 GNVVFRVDGGK-FFSIGKKRTLMDASGNPLFTIRR--KLFSLRPTWEIYRGGGSEGKKPIFTVKKKS-----MLQNKDSF  108 (187)
T ss_dssp             S-EEEEEE--S-CTTBTTEEEEE-TTS-EEEEEE----------EEEEEETT---GGGEEEEEE---------------E
T ss_pred             CCEEEEEEEec-ccCCCCEEEEECCCCCEEEEEEe--eecccceEEEEEECCCCccCceEEEEEEec-----ccCCCcce
Confidence            457899998 5 56788899999999999999999  88999999999999998    599999983     34445555


Q ss_pred             EEEEc
Q 027996           93 EGYSG   97 (215)
Q Consensus        93 ~v~~~   97 (215)
                      .+|.+
T Consensus       109 ~~f~~  113 (187)
T PF04525_consen  109 DVFLP  113 (187)
T ss_dssp             EEEET
T ss_pred             eEEEe
Confidence            56664

; PDB: 1ZXU_A 2Q4M_A.

>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]

Probab=97.87  E-value=0.00054  Score=60.65  Aligned_cols=165  Identities=16%  Similarity=0.127  Sum_probs=101.4

Q ss_pred             eCCCeEEEeCCCCEEEEEEecCC----C---CCCCCeEEEEcCCCCeEEEEEEecccccc--CccccceeEEEEcCCCCC
Q 027996           32 QNDGFTVYNCRGELVFRVDSYGP----D---TRDKDEHVLMDAHGKCLLTVRRKVQFQLM--RPSLHHRWEGYSGERTDG  102 (215)
Q Consensus        32 ~~d~f~V~D~~G~~vf~V~g~~~----~---~s~~~k~~l~D~~G~~L~~i~~k~~~~~~--~~s~~~~w~v~~~~~~~~  102 (215)
                      ..+.|.|.|.+|+.+|.+--...    -   ..-+-...++|.-|++++++++++.+..-  ........++-.+.    
T Consensus        97 t~NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~c~~~~~~~~~v~~p~----  172 (292)
T KOG0621|consen   97 TANRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSACALCLAQEIEIQSPP----  172 (292)
T ss_pred             cCcEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccccccccccEEEEEcCC----
Confidence            56889999999999995433110    0   12355688999999999999998422210  00001112222221    


Q ss_pred             CceEEEEEeecccCCceEEEEEeCCCC-ccEEEEee-------ecCceeEEEeC-CCcEEEEEEeeecccc-ceEeeece
Q 027996          103 QKPIFSVRRSSIIGRSSVTVEMYENPG-EEYQIEGN-------FWQRSCTIFNA-MKESVAEIRRKVDAST-QVLLAKDV  172 (215)
Q Consensus       103 ~~~l~~vkk~~~~~~~~~~V~l~~~~~-~~~~v~G~-------~~~~~~~I~~~-~g~~VA~V~rk~~~~~-~~~~g~dt  172 (215)
                      ...+-+|........+++.+-  +... ..+.|+|-       +-+..|.|... +++.|++|.|+|.... +.+...|+
T Consensus       173 ~~~lG~v~q~~~~~~~~f~i~--~~~~~~v~~v~gp~~~~~~~~~d~~f~~~~~d~~~~vg~I~k~w~g~~rE~fTDad~  250 (292)
T KOG0621|consen  173 MGLLGKVLQTWGCVNPNFHLW--DRDGNLVFLVEGPRCCTFACCDDTVFFPKTTDNGRIVGSISRKWAGLVREAFTDADT  250 (292)
T ss_pred             CceEEEEEEeeccccceEEEE--cccceeEEEEEcCceeEEEeecCcceeEEEcCCCeEEEEEeecccchhhhheeccce
Confidence            123444444443333455442  2211 12445544       44444444443 5889999999996544 45667899


Q ss_pred             EEEEEeCCCCH---HHHHHHHHHhcccccCCCC
Q 027996          173 FLLSVKPGFDG---AFAMGLVLVLDQINGDNYV  202 (215)
Q Consensus       173 Y~v~V~pgvD~---ali~alvv~lD~i~~~~~~  202 (215)
                      |.|.-.-..|.   |+++|.++-||.+..+.+.
T Consensus       251 f~v~FPldLdvk~kavllga~flID~~~Fe~~~  283 (292)
T KOG0621|consen  251 FVVHFPLDLDVKLKALLLGSTFLIDYMSFESRG  283 (292)
T ss_pred             eeEecCCcCCHHHHhhhhhheeeEEEEEEecCC
Confidence            99988877876   7899999999998887764

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=96.51  E-value=0.0087  Score=50.31  Aligned_cols=84  Identities=15%  Similarity=0.158  Sum_probs=61.9

Q ss_pred             cceEEEEEEEeceee------CCCeEEEeCCCCEEEEEEecCCCCCCCCeEEEEcCCCCeEEEEEEeccccccCcc----
Q 027996           18 QETHLTVFKTSLFFQ------NDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQLMRPS----   87 (215)
Q Consensus        18 ~~~~l~v~~k~~~~~------~d~f~V~D~~G~~vf~V~g~~~~~s~~~k~~l~D~~G~~L~~i~~k~~~~~~~~s----   87 (215)
                      +...+++.+. ..+.      ....+|.+..|+++-+|..  +...++.++.|+|++|+++++|+..      ...    
T Consensus        85 g~~vl~i~Rp-~~c~~C~~~~~~~~~V~~p~g~~iG~I~q--~~~~~~~~f~I~d~~~~~~~~I~gp------~~~~~~~  155 (221)
T PF03803_consen   85 GREVLTIERP-FKCCSCCPCCLQEMEVESPPGNLIGSIRQ--PFSCCRPNFDIFDANGNPIFTIKGP------CCCCSCC  155 (221)
T ss_pred             CCEEEEEEcC-CcceecccccceeEEEecCCCcEEEEEEE--cCcccceEEEEEECCCceEEEEeCC------cceeccc
Confidence            3456777665 3332      2678899999999999998  7666899999999999999999876      332    


Q ss_pred             ccceeEEEEcCCCCCCceEEEEEeecc
Q 027996           88 LHHRWEGYSGERTDGQKPIFSVRRSSI  114 (215)
Q Consensus        88 ~~~~w~v~~~~~~~~~~~l~~vkk~~~  114 (215)
                      ..-.|+++..+   | +.+.+|+|++.
T Consensus       156 ~~~~F~I~~~~---~-~~vg~I~k~w~  178 (221)
T PF03803_consen  156 CDWEFEIKDPN---G-QEVGSITKKWS  178 (221)
T ss_pred             cceeeeeeccc---C-cEEEEEEEecC
Confidence            23346666654   3 56999999874

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	215
1zxu_A	217	X-Ray Structure Of Protein From Arabidopsis Thalian		7e-11

>pdb|1ZXU|A Chain A, X-Ray Structure Of Protein From Arabidopsis Thaliana At5g01750 Length = 217

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 6   AAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLM 65
             V+V  +Y         + +      +  F + +  G L+F+V    P     D+ VL+
Sbjct: 24  GGVVVDPKYCAPYPIDXAIVRKXXSLTDGNFVITDVNGNLLFKVKE--PVFGLHDKRVLL 81
Query: 66  DAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPXXXXXXXXXXXXXXXXXEMY 125
           D  G  ++T+R K        S H RW+ + G  TD Q+                  +++
Sbjct: 82  DGSGTPVVTLREKXV------SXHDRWQVFRGGSTD-QRDLLYTVKRSSXLQLKTKLDVF 134
Query: 126 --ENPGE---EYQIEGNFWQRSCTIFNAMKESVAEIRRKVDASTQVLLAKDVFLLSVKPG 180
              N  E   +++++G++ +RSC ++    +++     +      V L KD F ++V P 
Sbjct: 135 LGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQXHRKHTVQSVFLGKDNFSVTVYPN 194
Query: 181 FDGAFAMGLVLVLDQIN 197
            D AF   LV++LD +N
Sbjct: 195 VDYAFIASLVVILDDVN 211
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	215
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	3e-53

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217

 Score =  169 bits (429), Expect = 3e-53
 Identities = 52/200 (26%), Positives = 101/200 (50%), Gaps = 14/200 (7%)

Query: 6   AAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLM 65
             V+V  +Y       + + +  +   +  F + +  G L+F+V    P     D+ VL+
Sbjct: 24  GGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVK--EPVFGLHDKRVLL 81

Query: 66  DAHGKCLLTVRRKVQFQLMRPSLHHRWEGYSGERTDGQKPIFSVRRSSII-GRSSVTVEM 124
           D  G  ++T+R          S+H RW+ + G  TD +  +++V+RSS++  ++ + V +
Sbjct: 82  DGSGTPVVTLRE------KMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFL 135

Query: 125 YEN---PGEEYQIEGNFWQRSCTIFNAMK-ESVAEIRRKVDASTQVLLAKDVFLLSVKPG 180
             N      +++++G++ +RSC ++       VA++ RK      V L KD F ++V P 
Sbjct: 136 GHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRK-HTVQSVFLGKDNFSVTVYPN 194

Query: 181 FDGAFAMGLVLVLDQINGDN 200
            D AF   LV++LD +N ++
Sbjct: 195 VDYAFIASLVVILDDVNRED 214

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	100.0
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	98.11

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=100.00  E-value=2.8e-42  Score=289.99  Aligned_cols=189  Identities=28%  Similarity=0.551  Sum_probs=146.0

Q ss_pred             CcceeEeccCccCCcceEEEEEEEeceeeCCCeEEEeCCCCEEEEEEecCCCCCCCCeEEEEcCCCCeEEEEEEeccccc
Q 027996            4 DQAAVLVADEYIYKQETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGKCLLTVRRKVQFQL   83 (215)
Q Consensus         4 ~~~~~~v~~~~~~~~~~~l~v~~k~~~~~~d~f~V~D~~G~~vf~V~g~~~~~s~~~k~~l~D~~G~~L~~i~~k~~~~~   83 (215)
                      +++.++|+++||++++++|+||+|.+++.+++|+|+|++|+++|+|+|  +.++++.++.|+|++|++|++|++|     
T Consensus        22 ~~~~~vv~~~~~~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~--~~~~~~~~~~l~D~~G~~l~~i~rk-----   94 (217)
T 1zxu_A           22 QAGGVVVDPKYCAPYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKE--PVFGLHDKRVLLDGSGTPVVTLREK-----   94 (217)
T ss_dssp             --CCCSSCGGGBCSSCEEEEEECC-----CCCEEEEETTSCEEEEEEC--SSTTCCSEEEEECTTSCEEEEEEC------
T ss_pred             CCcEEEECccccCCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEc--cccCCCCEEEEECCCCCEEEEEEcc-----
Confidence            344556669999999999999999777778899999999999999999  6689999999999999999999999     


Q ss_pred             cCccccceeEEEEcCCCCCCceEEEEEeeccc-CCceEEEEEeCC---CCccEEEEeeecCceeEEEeCC-CcEEEEEEe
Q 027996           84 MRPSLHHRWEGYSGERTDGQKPIFSVRRSSII-GRSSVTVEMYEN---PGEEYQIEGNFWQRSCTIFNAM-KESVAEIRR  158 (215)
Q Consensus        84 ~~~s~~~~w~v~~~~~~~~~~~l~~vkk~~~~-~~~~~~V~l~~~---~~~~~~v~G~~~~~~~~I~~~~-g~~VA~V~r  158 (215)
                       .++++++|++|.+++.++++++++||+++.+ ++++++|++.++   +..+|+|+|+|++++|+|++++ |++||+|+|
T Consensus        95 -~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~~~V~~~~~~~~~~~~~~I~G~~~~~~f~I~~~~~~~~Va~I~k  173 (217)
T 1zxu_A           95 -MVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHR  173 (217)
T ss_dssp             ------CEEEEEETTCCCGGGEEEEEEC-------CCEEEEETTCCC-CCCSEEEESCTTTTCCEEEETTTCCEEEEEEE
T ss_pred             -ccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCeEEEEECCCCCCCceEEEEEEeEeCCEEEEEECCCCEEEEEEEe
Confidence             8899999999998765444689999998422 467899988754   2468999999999999999986 799999999


Q ss_pred             eeccccceEeeeceEEEEEeCCCCHHHHHHHHHHhcccccCCC
Q 027996          159 KVDASTQVLLAKDVFLLSVKPGFDGAFAMGLVLVLDQINGDNY  201 (215)
Q Consensus       159 k~~~~~~~~~g~dtY~v~V~pgvD~ali~alvv~lD~i~~~~~  201 (215)
                      +| +++++++++|+|.|+|.||+|.+|++|+|++||+++++++
T Consensus       174 k~-~~~~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~~~  215 (217)
T 1zxu_A          174 KH-TVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNREDR  215 (217)
T ss_dssp             C---------CBCSEEEEECTTSBHHHHHHHHHHHHHHHC---
T ss_pred             ee-eccccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhhcc
Confidence            97 6788889999999999999999999999999999998764

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=98.11  E-value=4.4e-05  Score=63.16  Aligned_cols=97  Identities=19%  Similarity=0.183  Sum_probs=65.7

Q ss_pred             cceEEEEEEEeceeeCCCeEEEeCCCCEEEEEEecCCCCCCCCeEEEEcCCCC----eEEEEEEeccccccCccccceeE
Q 027996           18 QETHLTVFKTSLFFQNDGFTVYNCRGELVFRVDSYGPDTRDKDEHVLMDAHGK----CLLTVRRKVQFQLMRPSLHHRWE   93 (215)
Q Consensus        18 ~~~~l~v~~k~~~~~~d~f~V~D~~G~~vf~V~g~~~~~s~~~k~~l~D~~G~----~L~~i~~k~~~~~~~~s~~~~w~   93 (215)
                      ....|+|..+ .+..++.+.|+|.+|++++++.-  +.+++..+..++++.+.    +|++|+++.     .+++++.|+
T Consensus        61 G~~vf~V~~~-~~~~~~~~~l~D~~G~~l~~i~r--k~~~~~~~~~v~~~~~~~~~~~i~~vrk~~-----~~~~~~~~~  132 (217)
T 1zxu_A           61 GNLLFKVKEP-VFGLHDKRVLLDGSGTPVVTLRE--KMVSMHDRWQVFRGGSTDQRDLLYTVKRSS-----MLQLKTKLD  132 (217)
T ss_dssp             SCEEEEEECS-STTCCSEEEEECTTSCEEEEEEC--------CEEEEEETTCCCGGGEEEEEEC------------CCEE
T ss_pred             CCEEEEEEcc-ccCCCCEEEEECCCCCEEEEEEc--cccccCcEEEEEcCCCCCCCcEEEEEEEec-----cccCCCeEE
Confidence            5678999887 45678889999999999999999  87899999999999875    799999872     467889999


Q ss_pred             EEEcCCCCCCceEEEEEeecccCCceEEEEE
Q 027996           94 GYSGERTDGQKPIFSVRRSSIIGRSSVTVEM  124 (215)
Q Consensus        94 v~~~~~~~~~~~l~~vkk~~~~~~~~~~V~l  124 (215)
                      ++.++.++++.+.++|+-.  +...+++|.-
T Consensus       133 V~~~~~~~~~~~~~~I~G~--~~~~~f~I~~  161 (217)
T 1zxu_A          133 VFLGHNKDEKRCDFRVKGS--WLERSCVVYA  161 (217)
T ss_dssp             EEETTCCC-CCCSEEEESC--TTTTCCEEEE
T ss_pred             EEECCCCCCCceEEEEEEe--EeCCEEEEEE
Confidence            9997644333467777544  2234677754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	215
d2q4ma1	189	d.23.1.2 (A:24-212) Hypothetical protein At5g01750	6e-56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	215
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	100.0
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	97.91